genome.fa.s2027.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2027
Parameters: 2 7 7 80 10 50 1000
Length:  87286

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1396--1460	33	2.0	33	87	0	94	44	12	13	29	1.81
1500--1576	21	3.7	21	96	0	136	32	16	22	28	1.96
5081--5106	13	2.0	13	100	0	52	30	15	15	38	1.88
6383--6434	18	2.8	18	83	13	54	28	3	3	63	1.30
7893--7938	19	2.3	20	88	3	67	45	0	0	54	0.99
11228--11279	22	2.3	23	80	6	61	59	0	0	40	0.97
12174--12213	21	1.9	21	85	10	55	57	5	22	15	1.57
14611--14725	57	2.0	57	96	0	212	26	26	16	30	1.97
16964--17016	23	2.2	24	83	3	63	32	13	9	45	1.75
17737--17804	18	3.8	18	86	1	93	27	0	7	64	1.20
17761--17802	22	1.9	22	85	0	57	28	0	2	69	1.01
17742--17815	36	2.1	36	82	5	87	32	1	5	60	1.27
20434--20681	91	2.8	88	76	7	239	39	8	22	30	1.83
23212--23248	18	2.1	18	89	0	56	37	16	13	32	1.87
23913--23976	10	6.6	10	73	7	51	3	18	0	78	0.89
23925--23974	18	2.7	19	85	11	68	4	20	0	76	0.95
28188--28246	21	2.9	21	84	2	75	37	8	16	37	1.80
28189--28266	20	3.8	20	82	1	84	34	8	15	41	1.78
29197--29236	20	2.0	20	85	5	53	32	15	5	47	1.66
38035--38157	20	5.6	20	72	19	102	39	12	17	30	1.86
39039--39776	28	25.5	28	85	3	758	22	17	30	30	1.96
39039--39776	170	4.2	168	83	6	816	22	17	30	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39550--39776	32	7.4	32	89	4	276	19	16	32	31	1.94
39001--39767	85	8.7	90	82	7	434	22	17	30	29	1.97
40992--41052	18	3.2	18	76	13	59	4	3	9	81	0.94
40990--41052	25	2.6	24	76	2	63	4	3	9	82	0.92
43949--44129	60	3.0	60	97	0	344	32	19	18	29	1.96
47794--47818	13	1.9	13	100	0	50	32	16	16	36	1.90
47771--47836	33	2.0	33	93	0	114	28	16	18	36	1.93
47909--47934	13	2.0	13	100	0	52	38	15	15	30	1.88
50918--50943	13	2.0	13	100	0	52	38	15	15	30	1.88
50899--50963	33	2.0	33	87	6	96	41	16	13	27	1.87
57130--57168	13	3.0	13	88	0	60	30	20	15	33	1.94
59754--59779	13	2.0	13	100	0	52	38	15	15	30	1.88
59735--59799	33	2.0	33	87	6	96	41	16	13	27	1.87
67504--67628	20	5.7	20	76	18	88	40	13	15	31	1.86
67575--67628	12	5.2	12	68	32	52	35	18	11	35	1.86
68761--68791	2	15.5	2	100	0	62	51	0	0	48	1.00
69488--69924	166	2.6	163	75	9	420	49	8	10	31	1.68
78463--78501	21	1.9	21	84	5	53	58	0	0	41	0.98
78768--78807	17	2.3	17	86	4	53	25	0	0	75	0.81
78943--79238	148	2.0	148	84	2	380	45	8	6	40	1.59
84395--84472	30	2.6	30	85	2	104	46	8	19	25	1.79
84454--84492	20	1.9	21	84	5	53	48	10	15	25	1.76

Tables:   1

The End!