Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold203
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 651529
ACGTcount: A:0.25, C:0.14, G:0.13, T:0.25
Warning! 150756 characters in sequence are not A, C, G, or T
File 3 of 3
Found at i:511403 original size:951 final size:948
Alignment explanation
Indices: 509560--512496 Score: 4077
Period size: 951 Copynumber: 3.1 Consensus size: 948
509550 GCAAAAGAAA
* * * *
509560 AAAGTGAATGAGGATCATTACTACAATCCATGTTTGCCATAATTGAGGCACGAACTTAGACTTTA
1 AAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTAGACTTTA
*
509625 CCAAAATTGGTGGGAAGAAAGCCTTGCTTACGAAACCAAACCATCAATATCGTGTATCCTTATGA
66 CCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTATGA
* * * *
509690 GAAGACTAAGTTTATGGTGCCTAATCCAAAAGAGAATAAGGATTAGTGTGACTACTCATTTTTTT
131 GAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATAAGGATTAGTGTGACTATTCATGTTTGT
* *
509755 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGGAAGAAATGCTTTTCTTACGACAT
196 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACAT
* * *
509820 CAAAGCATCAATGTTGTGTATCCTAAAT-AAAGGAATGTGTTTTTGGTTTCCAATCTCGAAAAGA
261 -AAAGCATCAATGTCGCGTATCCT-AATGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAAAGA
* * * *
509884 GTAGAGACTGTTA-GAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGAAAA
324 GTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAAGAATGAACTTTGATTTTAAGGAAAA
* * *
509948 TTGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAACATCATTTATCCTAATGAGAAGAA
389 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * * *
510013 TACGTTTATAGTGCCTTATCACAAAATGAATGAAG-TCCACTACTAGAATCCATGTTTGTCACAA
454 TAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGAT-CATTACTAGAATCCATGTTTGTCACAA
* * * *
510077 TTGAGGCATGAACTTAGACTTTACAAAAATTGGTTGGAAGAAAGCCCTTCTTACGAAACCAAACC
518 TTGAGGCATGAACATAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTACGAAACCAAAGC
* ** * * *
510142 ATCATTATTTTGTATCCTTATGAAAAGACTAAGTTTATGGTGCCTAATCCAAAAACGAATTAGTG
583 ATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAG-G
* * * *
510207 ATTAGTGTGACTACTCATGTTTGTCTTATTTAAGAGACAAAATTTGATTCTATCAAAAACGATTG
647 ATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATCAAAAACG-TT-
* * * ***
510272 GA-AGAAATGCTTTTCTTGCATCATCAAAGCATCAATGTCGCGTATCCTAATGAAAGGAATGTGT
710 GATAGAAATGCTTTTTTTGGA-CACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGT
* * *
510336 TTTTCA-TTTCCAATCTTGAATAGAGTGGAA-ACTGTTATGAGAATCAATGCTTGCCTTATTTAA
774 TTTT-AGTTCCCAATCTTGAAAAGAG-GGAAGACTGTTACGAGAATCAATGCTTGCCTTATTTAA
* * *
510399 -GGAAGGAACT-TTGATTTTGAGGAAAAAAGGGCAATGAAAAGATTTCCATGCAAAAGAATATCA
837 GGGAA-GAA-TATTGATTTT-AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
* * * * * *
510462 TCCATATCACTTATCGTAA-GAAGGAGAATAAGTTTATACTACCTAATCAC
899 TCAATATCATTTATCCTAATG-AGAAGAATAAGTTTATAGTGCCTAATCAC
* * * * * * *
510512 AATGTGAATGAAGATCATTACTAGAATCCGTGTTCGGCACATTTGAGACATGAACTTAGACTTTA
1 AAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTAGACTTTA
* *
510577 CCAAAATTGGTGGGAAGGAAG-CTTTCTTACGAAACCAAACCATCAATATCGTGTATCCATATGA
66 CCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTATGA
* * * * * *
510641 AAAGACTAGGATTATGGTGCCTAATCCAAAAAAGAATGAGGATTACTGTGACAATTCATGTTTGT
131 GAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATAAGGATTAGTGTGACTATTCATGTTTGT
* *
510706 CTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTCCTTGCGACAG
196 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACA-
*
510771 TAAAGCATCAATGTCGCGTATCCTAATGAACGGAATGTGTTTTTGGTTCCCAATCTCGAAAAGAG
260 TAAAGCATCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAAAGAG
* * * * *
510836 TGGAAAGTGTTACGAGAATCAATGCTTGCCTTATATAACGAATGAACTTTGATTTGAAGGAAAAT
325 TGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAAGAATGAACTTTGATTTTAAGGAAAAT
* * *
510901 AGGGCAAAAAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTCATGAGGAGAAT
390 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * * *
510966 AAGTTTATACTACCTAATCACAAAGTGAATGATGATCGTTACTAGAATCCATGTTTGTCACATTT
455 AAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATT
* * * * **
511031 GAGGCATGAACGTAGACTTTTCCAAAATTGGTGGGAAGAAAGCCTTTCTTATAAAACCAAAGCAT
520 GAGGCATGAACATAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTACGAAACCAAAGCAT
511096 CAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATT
585 CAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATT
511161 AGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTAT-AAAAACAGTTGATA
650 AGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATCAAAAAC-GTTGATA
*
511225 GAAATGCATTTTTTTGTGACACCAAAGCATCAATGTCATATATCTTAATGAAAGGAATGTGTTTT
714 GAAATGC-TTTTTTTG-GACACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTT
* *
511290 TAGTTCCCAATCTTGAAAAGAGAGAAGACTATTACGAGAATCAATGCTTGCCTTATTTAAGGGAA
777 TAGTTCCCAATCTTGAAAAGAGGGAAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGAA
* * * *
511355 GAATATGGATGTTATGGAAAATAGGGCAAAGAAAAGATTTCTATGCAAAAGAAAATCTTCAATAT
842 GAATATTGATTTTA-GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
* * *
511420 CATTTATCCTAATGAGCAGAATATGTTCATAGTGCCTAATCAC
906 CATTTATCCTAATGAGAAGAATAAGTTTATAGTGCCTAATCAC
* * * * *
511463 AACGTGAATGCAGATCATTACTAGAATCCATGTTTGTCACATTTAAGGCACGAACATAGACTTTA
1 AAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTAGACTTTA
* * * * * *
511528 CCAAAATTTGTGGGAAAAAAGCCTTTCTTATGAAACAAAAGCTTCAATATCGTGTATCCTTATGA
66 CCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTATGA
* * *
511593 GAAGACTAAGTTTATGGTACCTAATCCTAAAAAGAATAAGAATTAGTGTGACTATTCATGTTTGT
131 GAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATAAGGATTAGTGTGACTATTCATGTTTGT
* * * * *
511658 CTTATTTTAGAGACAAACTTTGATTATATCAAAAATGGTTGAAAGAAATGCTTTTTTTGTGACAC
196 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACA-
* * * * * *
511723 CAAAGCATCAATGCCACATATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATATTGAAAAGAG
260 TAAAGCATCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAAAGAG
* *
511788 TGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAAGGATGAAC-TTGATTTTAAGGAAAAT
325 TGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAAGAATGAACTTTGATTTTAAGGAAAAT
* * * * ** * *
511852 AAGGCAAAGAGAAGAATTCCATGCAATAGAAAATCATCAATGCCGTTTATCCTAATGAGGAGACT
390 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
** * * * *
511917 TTGTTTATAGTGCCTAATCACAAAGTAAATGAAGATCTTTACTACAATCCATGTTTGCCACAATT
455 AAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATT
* *
511982 GAGGCACGAACATAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTCACGAAACCAAAGCAT
520 GAGGCATGAACATAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTACGAAACCAAAGCAT
512047 CAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAA-CCAAAAAAGAATGAGGATT
585 CAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATT
* * *
512111 AGTATGACTATTCATGTTTGTTTTATTTAAGAGATAAACTTTGATACTATCAAAAACGGTTCATA
650 AGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATCAAAAAC-GTTGATA
* *
512176 GAAATGCTTTTTTTGCGACACCAAAGCATCAATGTCATATATCCTACTGAAAGCAATGTGTTTTT
714 GAAATGCTTTTTTTG-GACACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTT
* *
512241 GGTTCCCAATCTTGAAAATG-GGGAAGAATGTTACGAGAATCAATGCTTGCCTTATTTAAGGGAA
778 AGTTCCCAATCTTGAAAA-GAGGGAAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGAA
* * * * *
512305 GAATATTGATTTTACGAAAAATAGGGTAAA-AAAAGATTTCCATGCCAAAGAAGATCCTCAATAT
842 GAATATTGATTTTA-GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
* **
512369 CATTTATCCTAATGAGAAAAATGCGTTTATAGTGCCTAATCAC
906 CATTTATCCTAATGAGAAGAATAAGTTTATAGTGCCTAATCAC
* * *
512412 AAAATGAATGAAGACCATTACTAGAATCCATATTTGTCACAATTGAGGCACGAACTTAGACTTTA
1 AAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTAGACTTTA
512477 CCAAAATTGGTGGGAAGAAA
66 CCAAAATTGGTGGGAAGAAA
512497 AATAGGGTAA
Statistics
Matches: 1756, Mismatches: 212, Indels: 37
0.88 0.11 0.02
Matches are distributed among these distances:
949 145 0.08
950 229 0.13
951 777 0.44
952 604 0.34
953 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (948 bp):
AAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTAGACTTTA
CCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTATGA
GAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATAAGGATTAGTGTGACTATTCATGTTTGT
CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACAT
AAAGCATCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAAAGAGT
GGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAAGAATGAACTTTGATTTTAAGGAAAATA
GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATA
AGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTG
AGGCATGAACATAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTACGAAACCAAAGCATC
AATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTA
GTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATCAAAAACGTTGATAGA
AATGCTTTTTTTGGACACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTAGT
TCCCAATCTTGAAAAGAGGGAAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGAAGAAT
ATTGATTTTAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTT
ATCCTAATGAGAAGAATAAGTTTATAGTGCCTAATCAC
Found at i:512780 original size:312 final size:311
Alignment explanation
Indices: 512198--512809 Score: 890
Period size: 312 Copynumber: 2.0 Consensus size: 311
512188 TTGCGACACC
512198 AAAGCATCAATGTCATATATCCTACTGAAAGCAATGTGTTTTTGGTTCCCAATCTTGAAAATGGG
1 AAAGCATCAATGTCATATATCCTACTGAAAGCAATGTGTTTTTGGTTCCCAATCTTGAAAATGGG
* * * *
512263 GAAGAATGTTACGAGAATCAATGCTTGCCTTATTTAAGGGAAGAATATTGATTTTACGAAAAATA
66 GAAGAATGTTACGAGAATCAATGCTTGCCTTATATAAGCGAAGAATATTGATTTGAAGAAAAATA
* * * * **
512328 GGGTAAAAAAAGATTTCCATGCCAAAGAAGATCCTCAATATCATTTATCCTAATGAGAAAAATGC
131 GGGAAAAAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAAAATAA
* *
512393 GTTTATAGTGCCTAATCACAAAATGAATGAAGACCATTACTAGAATCCATATTTGTCACAATTGA
196 GTTTATACTGCCTAATCACAAAATGAATGAAGACCATTACTAGAATCCATATTTGCCACAATTGA
* *
512458 GGCACGAACTTAGAC-TTTACCAAAATTGGTGGGAAGAAAAATAGGGTAAAA
261 GGCACGAACTTAGACTTTTA-AAAAATTGGTGGAAAGAAAAATAGGGTAAAA
* * * *
512509 AAAGCGTCAATGTCATATATCCTAGTGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAA-GAG
1 AAAGCATCAATGTCATATATCCTACTGAAAGCAATGTGTTTTTGGTTCCCAATCTTGAAAATG-G
* * *
512573 GGAAGACTGTTATGAGAATCAATGCTTGCCTTATATAA-CGAATGAACT-TTGATTTGAAGGAAA
65 GGAAGAATGTTACGAGAATCAATGCTTGCCTTATATAAGCGAA-GAA-TATTGATTTGAAGAAAA
* * * * *
512636 ATAGGGCAAAAAAAAGTTTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTCATGAGGAGA
128 ATAGGG-AAAAAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAAA
* * *
512701 ATAAGTTTATACTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGCCACAA
192 ATAAGTTTATACTGCCTAATCACAAAATGAATGAAGACCATTACTAGAATCCATATTTGCCACAA
512766 TTGAGGCACGAACTTAGACTTTTAAAAAATTGGTGGAAAGAAAA
257 TTGAGGCACGAACTTAGACTTTTAAAAAATTGGTGGAAAGAAAA
512810 CCTTTCTTAC
Statistics
Matches: 267, Mismatches: 29, Indels: 9
0.88 0.10 0.03
Matches are distributed among these distances:
310 4 0.01
311 114 0.43
312 145 0.54
313 4 0.01
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (311 bp):
AAAGCATCAATGTCATATATCCTACTGAAAGCAATGTGTTTTTGGTTCCCAATCTTGAAAATGGG
GAAGAATGTTACGAGAATCAATGCTTGCCTTATATAAGCGAAGAATATTGATTTGAAGAAAAATA
GGGAAAAAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAAAATAA
GTTTATACTGCCTAATCACAAAATGAATGAAGACCATTACTAGAATCCATATTTGCCACAATTGA
GGCACGAACTTAGACTTTTAAAAAATTGGTGGAAAGAAAAATAGGGTAAAA
Found at i:514805 original size:476 final size:475
Alignment explanation
Indices: 512509--519716 Score: 8816
Period size: 476 Copynumber: 15.2 Consensus size: 475
512499 TAGGGTAAAA
* * *
512509 AAAGCGTCAATGTCATATATCCTAGTGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAG-
1 AAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAGT
* * * *
512573 GGAAGACTGTTATGAGAATCAATGCTTGCCTTATATAACGAATGAACTTTGATTTGAAGGAAAAT
66 GG-AGACTGTTACGAGAATCAATGCTTGCCTTATTTAA-GGATGAACTTTGATTTTAAGGAAAAT
* * * *
512638 AGGGCAAAAAAAAGTTTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTCATGAGGAGAAT
129 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
** * *
512703 AAGTTTATACTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGCCACAATT
194 GTGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATT
* * * *
512768 GAGGCACGAACTTAGACTTTTA-AAAAATTGGTGGAAAGAAAACCTTTCTTACAAAATCAAAGCA
259 GAGGCACGAACTTAGAC-TTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCA
* *
512832 TCAATATTGTGTATCCTTATGAAAAGACTAAGTTTATGGTGCCTAATCC-AGAAAAGAATGAGGA
323 TCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCTA-AAAAGAATGAGGA
* * *
512896 TTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATCAAAAATGGTTGA
387 TTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGA
* * * * *
512961 TAGAATTGTTTTTTTTTTTGCGACACT
452 AAGAAATG---CTTTTCTTGCGACACC
* * * * *
512988 AAAGCATCAATGTCATATATTCTACTAAAAGGATTGTGTTTTTGGTT-CCAATCTTGAAAA-AGG
1 AAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAGT
*
513051 GGAAGACTATTACGAGAATCAATGCTTGCCTTATTTAAAGGATGAAC-TTGATTTTAAGGAAAAT
66 GG-AGACTGTTACGAGAATCAATGCTTGCCTTATTT-AAGGATGAACTTTGATTTTAAGGAAAAT
* * * * ** * *
513115 AAGGCAAAGAGAAGAATTCCATGCAACAGAAAATCATCAATGCCGTTTATCCTAATGAGGAGACT
129 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * *
513180 TTGTTTATAGTGCCTAATCACAACGTGAATGAAGATCACTACTAGAATCCATGTTTGCCACAATT
194 GTGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATT
* * * *
513245 GCGGCATGAACTTAGACTTTACAAAAATTGGTTGGAAGATAGCCTTTCTTACGAAACCAAAGCAT
259 GAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCAT
*
513310 CAATATCGTGTATCCTTATGAAAAGACTAAGTTTATGGTGCCTAATCC-AGAAAAGAATGAGGAT
324 CAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCTA-AAAAGAATGAGGAT
* * * * * *
513374 TAGTATGACTATTCATGTTTATCTTACTTAAGAGACAAACTTTGATACTATCAAAAATGGTTGAT
388 TAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGAA
* * * *
513439 AGAATTGTTTTTTTTTTTGCGACACT
453 AGAAATG---CTTTTCTTGCGACACC
* * *
513465 AAAGCATCAATGTCATATATCCTACTAAAAGGATTGTGTTTTTGGTT-CCAATCTTGGAAAAG-G
1 AAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTT-GAAAAGAG
* * *
513528 -GGAAGACTATTACGAGAATCAATGCTTGCCTTATTTTAAGGAAAGAA-TATTGATTTTATGGAA
65 TGG-AGACTGTTACGAGAATCAATGCTTGCCTTA-TTTAAGG-ATGAACT-TTGATTTTAAGGAA
* * *
513591 AATAGGGCAAAG-AAAGTTTTCCATGCAAAA-AAAGATCATCAATATCATTTATCATAATAAGGA
126 AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA-ATCATCAATATCATTTATCCTAATGAGGA
* * * * * *
513654 GAATATGATCATAGTGCCTAATCACAACGTGAATGAAGATCACTACTAGAATCCATGTTTGCCAC
190 GAATGTGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCAC
* * * *
513719 AATTGCGGCATGAACTTAGACTTTACAAAAATTGGTTGGAAGATAGCCTTTCTTACGAAACCAAA
255 AATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAA
* *
513784 GCATCAATATCGTGTATCCTTATGAGAAAACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAG
320 GCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGAG
* * ** *
513849 GATTAGTATGACTGTTCATGTTTGTCTTATTTAAGAGATAAACTTTGAAACTATCAAAAACGGTT
385 GATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTT
* * *
513914 GATAGGAATGCTTTTTTTGCGACACC
450 GAAAGAAATGCTTTTCTTGCGACACC
* *
513940 AAAGCATCAATGTCATATATCCTACTGAAAGCAATGTGTTTTTGGTTCCCAATCTTGAAAATG-G
1 AAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA-GAG
* * * *
514004 -GGAAGAATGTTACGAGAATCAATGCTTGCCTTATTTAAGGGAAGAA-TATTGATTTTACGAAAA
65 TGG-AGACTGTTACGAGAATCAATGCTTGCCTTATTTAA-GGATGAACT-TTGATTTTAAGGAAA
* * * * * *
514067 ATAGGGTAAA-AAAAGATTTCCATGCCAAAGAAGATCCTCAATATCATTTATCCTAATGAGAAAA
127 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * * *
514131 ATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGACCATTACTAGAATCCATATTTGTCACAA
192 ATGTGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAA
* * * *
514196 TTGAGGCACGAACTTAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTATGATACCAAACC
257 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGC
* * * * *
514261 ATCAATATCGTGCATCCTTATGAGAAGACTAAGTTTACGATGCCTAAACCAAAAAAGAATGAGGA
322 ATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGAGGA
* * * * *
514326 TTAGTATGACTACTCGTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATTGG
387 TTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGA
* *
514391 AAGAAATGCTTTTCTTAG-GATATC
452 AAGAAATGCTTTTCTT-GCGACACC
*** **
514415 AAAGCATCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTCATTCCCAATCTTGAAAAGAGT
1 AAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAGT
* *
514480 GGAGATTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTCAAGGAAAATA
66 GGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGG-ATGAACTTTGATTTTAAGGAAAATA
* * * * * * *
514545 GGACAAAGAAAAGATTTTCATGCAAAAGAAAATCGTCCATATCATTTATCCTAAGGACGAGAATA
130 GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* * * * *
514610 AGTTTATACTGCCTAATCACAAAGAGAATGAAGAACATTACTAGAATCCACGTTTGTCACAACTT
195 TGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAA-TT
* * * * *
514675 -AGGCACGAACTTAAACTTTGCAAAAATTGGCGAGAAGAAAGCCTTTCTTATGAAACCAAAGCAT
259 GAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCAT
* * *
514739 CAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGATTGGGGATT
324 CAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGAGGATT
* * *
514804 AGTATGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGATTGAAA
389 AGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGAAA
*
514869 GAAATGCTTTTCTTGTGACACC
454 GAAATGCTTTTCTTGCGACACC
* * *
514891 AAA-CATCTATGTCATCTATCCTAATGAAAGGAATGTGTTTTTTGGTTCCCAATCTTGAAAAAAG
1 AAAGCATCAATGTCATATATCCTAATGAAAGGAATGTG-TTTTTGGTTCCCAATCTTGAAAAGAG
* * * *
514955 TGGAGAGTGTTATGAGAATCAATGGTTGCCTTATTTAACGGATGAACTTTGATTTTAAGAAAAAT
65 TGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAA-GGATGAACTTTGATTTTAAGGAAAAT
* *
515020 AGGGCAAAGAAAAGATTTCCATGCAAAAGAATACCATCAATATCATTTATCCTAATGAGGAGAAT
129 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * * * *
515085 ATATTCATAGTGTCTAATCACAAAGTGAGTGAAGATCATCACTAGAATCC-TAGTTTGTCACAAT
194 GTGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCAT-GTTTGTCACAAT
* * * * * * * *
515149 TGAGGCATGAACTTAGGCTTCACAAAAACTGGTGGGAAGAAAGCCTTTCATATGAAACGAAAGCT
258 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCA
* * * * *
515214 TCAATACCGTGCATCCTTATTAGAAGACTAAGTTTATGGTGCCAAATCCTGAAAAGAATGAGGAT
323 TCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGAGGAT
* * * * * **
515279 TAGTGTGATTATTCATGTTTTTCTTATTTATGAGACAAACTTTGATTTTATAAAAAACTATTGAA
388 TAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGAA
* *
515344 AGAAATGCTTTTCTTGTGTCA-C
453 AGAAATGCTTTTCTTGCGACACC
*** *
515366 AAATTGTCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTTGGTTTCCAATCTTGAAAAGAG
1 AAAGCATCAATGTCATATATCCTAATGAAAGGAATGTG-TTTTTGGTTCCCAATCTTGAAAAGAG
* * * * * *
515431 TAGAGATTGTTACGAAAATCAATGCTTGCCTTATTTAAAGGATGAACATTGATTTTTAGGAAAAA
65 TGGAGACTGTTACGAGAATCAATGCTTGCCTTATTT-AAGGATGAACTTTGATTTTAAGGAAAAT
* * * *
515496 AGGGCAAAGAGAAGATTTTCATGCAAAAGCAAATCATCAATATCATTTATCCTAATGAGAAGAAT
129 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * *
515561 GTG----T--T---T-AT---AAAGAGAATGAAGAACATTACTAGAATCCACGTTTGTCATAACT
194 GTGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAA-T
** * * **
515613 T-AGGTGCGAACTTAAACTTTGCAAAAATTGGCAGGAAGAAAGCCTTTCTTACGAAACCAAAGCA
258 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCA
* * * * * * *
515677 TCAATATCGTGTATCATTATTAGAAGACTAAGTTTATGGTGCCTAGTACTGAAAAGATTGGGGAT
323 TCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGAGGAT
* * *
515742 TAGTATGACTATTCACGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGCTGAA
388 TAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGAA
* * *
515807 AAAAATGCATTTCGTGCGACACC
453 AGAAATGCTTTTCTTGCGACACC
* *
515830 AAAGCATCAATGTCATATATCCTAATGAAAGGAACGTGTTTTTTGGTTCCCAAACTTGAAAAGAG
1 AAAGCATCAATGTCATATATCCTAATGAAAGGAATGTG-TTTTTGGTTCCCAATCTTGAAAAGAG
* * * ** * *
515895 TAGAGACTGTTACGAGAATCAATACTTGCCTTATTTAAAGGATAAACAATAATTTTTAGGAAAAT
65 TGGAGACTGTTACGAGAATCAATGCTTGCCTTATTT-AAGGATGAACTTTGATTTTAAGGAAAAT
* *
515960 AGGGCAAA-AAAAGATTTCCATACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAAAAT
129 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * * *
516024 GTGTTTATGGTGCCTAAACATAAAGTGAATAAAGATCGTTACTAGAATCCATGTTTGTCACAATT
194 GTGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATT
* * * **
516089 GAGGCACGAACTTAGACTTTATAAAAA-TGGTTGGGAAGAAAGCCTTTTTTACGAAACAAAAGTG
259 GAGGCACGAACTTAGACTTTACAAAAATTGG-TGGGAAGAAAGCCTTTCTTACGAAACCAAAGCA
* * * *
516153 TCAATATCGTGTATCCATATGAGAAGACTAAGTTTATAGTGCCTAATCCTAAAAAAAAATGGGGA
323 TCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCT-AAAAAGAATGAGGA
* * *
516218 TCAGTATGGCTATTCATGTTTGTCTTACTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGA
387 TTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGA
*
516283 GAGAAATGCTTTTCTTGCGACACC
452 AAGAAATGCTTTTCTTGCGACACC
* * *
516307 AAACCATCAATGTTATATATCCTAAGGAAAGGAATGTGTTTTTTGGTTCCCAATCTTGAAAAGAG
1 AAAGCATCAATGTCATATATCCTAATGAAAGGAATGTG-TTTTTGGTTCCCAATCTTGAAAAGAG
* * *
516372 TGGAAACTGTTACGAGAATCAATGCTTGCCTTATTTAAAGGATGAACATTGATTTTTAGGAAAAT
65 TGGAGACTGTTACGAGAATCAATGCTTGCCTTATTT-AAGGATGAACTTTGATTTTAAGGAAAAT
* * * ** *
516437 AGGGCAAACAAAAGATTTTCATGCAAAAGAAAATCTTCTTTATCATTTATCCTAATAAGGAGAAT
129 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * *
516502 GCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAAAATCCTTGTTTGTCACAATT
194 GTGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATT
* * * * *
516567 GAGGCACGAACTTAGTCTTTTCAAAAATTGGT-GGAAAACAAGCCTTTCTTACGAAACCGAAGCT
259 GAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGA-AAGCCTTTCTTACGAAACCAAAGCA
* * * * * * *
516631 TCAATTTCCTGCATCCTTATTAGAAGACTAAGTTTATGGTGCCAAATCCTGAAAAGAATAAGGAT
323 TCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGAGGAT
* * * *
516696 TAGTATGATTATTCATGTTTGT-TTAATTTAAGAGACAAAGTTTGATTCTATAAAAAACGATTGG
388 TAGTATGACTATTCATGTTTGTCTT-ATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGA
* * *
516760 AAGAAATGCATTTCTTGTGACACG
452 AAGAAATGCTTTTCTTGCGACACC
* * *
516784 AAATCATCAATGTCATATATCCTAATAAAAGGAATGTCTTTTTTGGTTCCCAATCTTGAAAAGAG
1 AAAGCATCAATGTCATATATCCTAATGAAAGGAATGT-GTTTTTGGTTCCCAATCTTGAAAAGAG
* * * * * *
516849 TTGAGAGTGCTATGAGAATCAATGGTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGAAAAAT
65 TGGAGACTGTTACGAGAATCAATGCTTGCCTTATTT-AAGGATGAACTTTGATTTTAAGGAAAAT
*
516914 AGGGCAAAGAAAAGATTTCCATGCAAAAGAATA-CAATCAATATCATTTATCCTAATGAGGAGAA
129 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC-ATCAATATCATTTATCCTAATGAGGAGAA
* * * *
516978 TATGTTTGTAGTGCCTAATCAC-AAGTGAATGAAGATCATTACTAGAATCC-TAGTTTTTCACAG
193 TGTGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCAT-GTTTGTCACAA
* *
517041 TTGAGGCACGAACTTAGGCTTTACAAAAACTGGTGGGAAGAAAGCCTTTCTT-CTGAAACCAAAG
257 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTAC-GAAACCAAAG
* * * * * * *
517105 CTTCAATATCGTGCATCCTTATTAGAAAAATAAGTTTATGGTGCCAAATCCTGAAAAGAATGAGG
321 CATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGAGG
* * * *
517170 ATTAGTATGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATAAAAAATGATTG
386 ATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTG
* * *
517235 AAAAAAATGCTTTTCTTACGGCACC
451 AAAGAAATGCTTTTCTTGCGACACC
* * *
517260 AAATCGTCAATGTCATATATCCCAATGAAAGGAATGTGTTTTTTGGTTCCCAATCTTGAAAAGAG
1 AAAGCATCAATGTCATATATCCTAATGAAAGGAATGTG-TTTTTGGTTCCCAATCTTGAAAAGAG
* * *
517325 TGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAAGGATGAACATTGATTTTTAGGAAAAT
65 TGGAGACTGTTACGAGAATCAATGCTTGCCTTATTT-AAGGATGAACTTTGATTTTAAGGAAAAT
* * * *
517390 AGGGCAAAGAAAATATTTTCATGCAAAAGCAAATCATCAATATCATTTACCCTAATGAGGAGAAT
129 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * *
517455 GTGTTTCTTA-TGCCTAATAACGAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTTACAAT
194 GTGTTT-ATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAAT
* * * * * * *
517519 TGAGGCATGAACTTAGACTTTACGAAAATTGTTAGGAAGAAAGCCTTTCTTTCAAAACAAAAGCA
258 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCA
* * *
517584 TCAATATCATTTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGGGGAT
323 TCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGAGGAT
* * *
517649 TAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTCATTCTATCAAAAACGGTTGAA
388 TAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGAA
517714 AGAAATGCTTTTCTTGCGACACC
453 AGAAATGCTTTTCTTGCGACACC
* * *
517737 AAATCGTCAATGTCATATATCCTAATGAAAGCAATGTGTTTTTTGGTTCCCAATCTTGAAAAGCA
1 AAAGCATCAATGTCATATATCCTAATGAAAGGAATGTG-TTTTTGGTTCCCAATCTTGAAAAG-A
* ** * * * *
517802 -TGGAGACTATTATAAGAATCAATGCTTGCCTTATTTAAGGGATAAACTTTAATTTTATGGCAAA
64 GTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAA-GGATGAACTTTGATTTTAAGGAAAA
*
517866 TAGGGCAAAGAAAGGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
128 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* ** * * * *
517931 TGTGTTTATGGTGCCTAATCACAAAAAGAATGTACATCATTACTAGAATCCATGGTTGTCATAAT
193 TGTGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAAT
* * * * * * *
517996 TGACGCACAAACTTAGACTTCAAAAAAATTGGTGAGAAGAAAGCCTTTCTTTCAAAACCAAAGCA
258 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCA
* * * *
518061 TCAATATCGTGTATGCTTATGAGAAGACTAAGTTTAAGGTACCTAAT-CTAGAAAAGAATGGGGA
323 TCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCTA-AAAAGAATGAGGA
* * * * * * * *
518125 TTAGTATGGCTATTCTTGTTTGCCTTATATAAAAGACAAACTTTGATTTTATCAAAAATGGTTGA
387 TTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGA
* * * *
518190 AAAAAATGCTTTTCTTGCAATATC
452 AAGAAATGCTTTTCTTGCGACACC
* * * * *** * *
518214 AAAGCGTCAATGTCGTGTATCCTACTGAAAGGAATGTGTTTCCAGTTCCCAATCATGAAAAGAAT
1 AAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAGT
*
518279 GGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACATTGGATTTT-AGGAAAAT
66 GGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAA-GGATGAAC-TTTGATTTTAAGGAAAAT
* * * *
518343 AGGTCAAAGAATAGATTTCCATGCAAAAGAATACCATCAATATCATTTATCCTAATGAGGAGAAT
129 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * *
518408 ATGTTTATAGTGCTTAATCACAAAGTGAATGAAGATCATTACTAGAATCC-TAGTTTGTCACAAC
194 GTGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCAT-GTTTGTCACAAT
* * * *
518472 TGAGGCACGAACTTAGGCTTTACAAAAAATTGGTGGGAAAAAAGCCTTTCTTACAAAACCAATGC
258 TGAGGCACGAACTTAGACTTTAC-AAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGC
* * * * *
518537 TTCAATATCATGAATCCTT-TCTAGAAGACTAAGTTTATGGTGCCTAATCCTACAAAGAAT-AGG
322 ATCAATATCGTGTATCCTTAT-GAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGA-G
* * * * *
518600 GATTAGTATGATTATTCATGTTTGTCTTTTTTGAA-AGGA-AAACTTTGATTTTATCAAAAACGA
385 GATTAGTATGACTATTCATGTTTGTCTTATTT-AAGA-GACAAACTTTGATTCTATAAAAAACGG
*
518663 TTGAAA-AAATGCTTTTCTTGGGACACC
448 TTGAAAGAAATGCTTTTCTTGCGACACC
* * * * * * **
518690 AAAGTGA-CAACGTCATGTATCCTAACGAAAGGAATGTGTTTCTGGTTCCTAATCTTGAGGAGAG
1 AAAG-CATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAG
* * * *
518754 TGGAGACTGTTACGAGAATCAATGCCTGCCTTATTTAAGGGATGAACTTTAATTTTATGAAAAAT
65 TGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAA-GGATGAACTTTGATTTTAAGGAAAAT
* * * * *
518819 AGGGCAAGGAAAAGATTTCCAAGCAAAAGAAAAACATTAATATCATTTATCATAATGAGGAGAAT
129 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* ** * *
518884 GTGTTTACAGTGCCTAATCACAAAAAGAATG-TGCATCATTACTAGAATCCATAG-TTATCACAA
194 GTGTTTATAGTGCCTAATCACAAAGTGAATGAAG-ATCATTACTAGAATCCAT-GTTTGTCACAA
* * * * * *
518947 TTAACGCACAAACTTAGACTTCACAAAAATTGGTGGGAA-AAAACCTTTCTTTCGAAACCAAAGC
257 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGC
* * *
519011 ATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTAAGGTACCTAAT-CTAGAAAAGAATGGGG
322 ATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCTA-AAAAGAATGAGG
* * * *
519075 ATTAGTATGACTATTCATGTTTGCCTTATATAAGAGACAAACTTTGATTTTATAAAAAATGGTTG
386 ATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTG
* ** *
519140 AAAAAAATGCTTTTCTTGTAATA-C
451 AAAGAAATGCTTTTCTTGCGACACC
* * * * * *
519164 AAAGCATCAATGTCATGTATCCTACTGAAAGGAATGTGTTTCTGGTTCCCAATCATAAAAAGAAT
1 AAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAGT
* * * * *
519229 GGAGACTGTTATGAGAATCAATGCTTGCCTTATATAACAGATAAACTTTGATTTTAAAGAAAATA
66 GGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAA-GGATGAACTTTGATTTTAAGGAAAATA
* * * *
519294 GGGCAAAGAAAAAATTTCTATGCAAAAGAAAATCATCAATATCATTTATCTTAATGAAGAGAATG
130 GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* * **
519359 TGTTTATAGTGCCTAATCACAAAGGGAATGAAGAACATTACTAGAATCCACATTTGTCACAACTT
195 TGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAA-TT
* * *
519424 -AGGCACGAACTTAGACTTTGCAAAAATTGGCGAGAAGAAAGCCTTTCTTACGAAACCAAAGCAT
259 GAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCAT
* * * * * * * * * **
519488 CAAAACCGTGCATCCCTTATTAGAAAATTAAGTTTATGGTGCCTAATACTGAAAAGATTTTGGAT
324 CAATATCGTGTAT-CCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGAGGAT
* * * *
519553 TAGTAAGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATAAAAACCGATTGAA
388 TAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGAA
*
519618 AGAAATGCTTTTCTTGTGACACC
453 AGAAATGCTTTTCTTGCGACACC
* * * *
519641 GAAGCATCAATGTCAAATATCCTAATG-ACGGAAATGTGTTTTTTGGTTCCCAAACTTGAAAAGA
1 AAAGCATCAATGTCATATATCCTAATGAAAGG-AATGTG-TTTTTGGTTCCCAATCTTGAAAAGA
*
519705 GTGGAAACTGTT
64 GTGGAGACTGTT
519717 TGATGACAAC
Statistics
Matches: 5868, Mismatches: 763, Indels: 197
0.86 0.11 0.03
Matches are distributed among these distances:
463 265 0.05
464 128 0.02
466 2 0.00
467 2 0.00
469 1 0.00
470 1 0.00
472 2 0.00
473 9 0.00
474 375 0.06
475 622 0.11
476 2006 0.34
477 1792 0.31
478 592 0.10
479 71 0.01
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (475 bp):
AAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAGT
GGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGATGAACTTTGATTTTAAGGAAAATAG
GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
GTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGA
GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCA
ATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGAGGATTAG
TATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGAAAGA
AATGCTTTTCTTGCGACACC
Found at i:517565 original size:953 final size:952
Alignment explanation
Indices: 512509--519716 Score: 8910
Period size: 953 Copynumber: 7.6 Consensus size: 952
512499 TAGGGTAAAA
* * *
512509 AAAGCGTCAATGTCATATATCCTAGTGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAG-
1 AAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAGT
* * * * * **
512573 GGAAGACTGTTATGAGAATCAATGCTTGCCTTATATAACGAATGAACTTTGATTTGAAGGAAAAT
66 GG-AGACTGTTACGAGAATCAATGCTTGCCTTATTTAAAGGATGAACATTGATTTTTAGGAAAAT
* * *
512638 AGGGCAAAAAAAAG-TTTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTCATGAGGAGAA
130 AGGGCAAAGAAAAGATTTT-CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * *
512702 TAAGTTTATACTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGCCACAAT
194 TATGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAAT
* * *
512767 TGAGGCACGAACTTAGACTTTTA-AAAAATTGGTGGAAAGAAAACCTTTCTTACAAAATCAAAGC
259 TGAGGCACGAACTTAGAC-TTTACAAAAATTGGTGG-AAGAAAGCCTTTCTTACGAAACCAAAGC
* * * * *
512831 ATCAATATTGTGTATCCTTATGAAAAGACTAAGTTTATGGTGCCTAATCCAGAAAAGAATGAGGA
322 ATCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGA
* * * *
512896 TTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATCAAAAATGGTTGA
387 TTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGATTGA
* * * * * * * * *
512961 TAGAATTGTTTTTTTTTTTGCGACACTAAAGCATCAATGTCATATATTCTACTAAAAGGATTGTG
452 AAGAAATG---CTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTG
* *
513026 -TTTTTGGTT-CCAATCTTGAAAA-AGGGGAAGACTATTACGAGAATCAATGCTTGCCTTATTTA
514 TTTTTTGGTTCCCAATCTTGAAAAGAGTGG-AGACTGTTACGAGAATCAATGCTTGCCTTATTTA
* * * * *
513088 AAGGATGAAC-TTGATTTTAAGGAAAATAAGGCAAAGAGAAGAATTCCATGCAACAGAAAATCAT
578 AAGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
** * * * *
513152 CAATGCCGTTTATCCTAATGAGGAGACTTTGTTTATAGTGCCTAATCACAACGTGAATGAAGATC
643 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAGTGAATGAAGATC
* * * * *
513217 ACTACTAGAATCC-ATGTTTGCCACAATTGCGGCATGAACTTAGACTTTACAAAAATTGGTTGGA
708 ATTACTAGAATCCTA-GTTTGTCACAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGA
* *
513281 AGATAGCCTTTCTTAC-GAAACCAAAGCATCAATATCGTGTATCCTTATGAAAAGACTAAGTTTA
772 AGAAAGCCTTTCTT-CTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTA
* * *
513345 TGGTGCCTAATCCAGAAAAGAATGAGGATTAGTATGACTATTCATGTTTATCTTACTTAAGAGAC
836 TGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGAC
** * * * * * *
513410 AAACTTTGATACTATCAAAAATGGTTGATAGAATTGTTTTTTTTTTTGCGACACT
901 AAACTTTGATTTTATAAAAAATGGTTGAAAGAAATG---CTTTTCTTGCGACACC
* * *
513465 AAAGCATCAATGTCATATATCCTACTAAAAGGATTGTGTTTTTGGTT-CCAATCTTGGAAAAG-G
1 AAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTT-GAAAAGAG
* * * *
513528 -GGAAGACTATTACGAGAATCAATGCTTGCCTTATTTTAAGGAAAGAATATTGA-TTTTATGGAA
65 TGG-AGACTGTTACGAGAATCAATGCTTGCCTTATTTAAAGG-ATGAACATTGATTTTTA-GGAA
* *
513591 AATAGGGCAAAG-AAAG-TTTTCCATGCAAAA-AAAGATCATCAATATCATTTATCATAATAAGG
127 AATAGGGCAAAGAAAAGATTTT-CATGCAAAAGAAA-ATCATCAATATCATTTATCCTAATGAGG
* * * * *
513653 AGAATATGATCATAGTGCCTAATCACAACGTGAATGAAGATCACTACTAGAATCCATGTTTGCCA
190 AGAATATGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCA
* * *
513718 CAATTGCGGCATGAACTTAGACTTTACAAAAATTGGTTGGAAGATAGCCTTTCTTACGAAACCAA
255 CAATTGAGGCACGAACTTAGACTTTACAAAAATTGG-TGGAAGAAAGCCTTTCTTACGAAACCAA
* * ** *
513783 AGCATCAATATCGTGTATCCTTATGAGAAAACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGA
319 AGCATCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGG
* * ** * *
513848 GGATTAGTATGACTGTTCATGTTTGTCTTATTTAAGAGATAAACTTTGAAACTATCAAAAACGGT
384 GGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGAT
* * * * *
513913 TGATAGGAATGCTTTTTTTGCGACACCAAAGCATCAATGTCATATATCCTACTGAAAGCAATGTG
449 TGAAAGAAATGCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTG
*
513978 -TTTTTGGTTCCCAATCTTGAAAATG-G-GGAAGAATGTTACGAGAATCAATGCTTGCCTTATTT
514 TTTTTTGGTTCCCAATCTTGAAAA-GAGTGG-AGACTGTTACGAGAATCAATGCTTGCCTTATTT
* * * * * *
514040 AAGGGAAGAA-TATTGATTTTACGAAAAATAGGGTAAA-AAAAGATTTCCATGCCAAAGAAGATC
577 AAAGGATGAACT-TTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
* * * * *
514103 CTCAATATCATTTATCCTAATGAGAAAAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGA
641 ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAGTGAATGAAGA
* *
514168 CCATTACTAGAATCCATA-TTTGTCACAATTGAGGCACGAACTTAGACTTTACCAAAATTGGTGG
706 TCATTACTAGAATCC-TAGTTTGTCACAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * *
514232 GAAGAAAGCCTTTCTTATGATACCAAACCATCAATATCGTGCATCCTTATGAGAAGACTAAGTTT
770 GAAGAAAGCCTTTCTTCTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTT
* * * ** * *
514297 ACGATGCCTAAACCAAAAAAGAATGAGGATTAGTATGACTACTCGTGTTTGTCTTATTTAAGAGA
835 ATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
* * * * * * *
514362 CAAACTTTGATTCTATCAAAAACGATTGGAAGAAATGCTTTTCTTAG-GATATC
900 CAAACTTTGATTTTATAAAAAATGGTTGAAAGAAATGCTTTTCTT-GCGACACC
*** **
514415 AAAGCATCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTCATTCCCAATCTTGAAAAGAGT
1 AAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAGT
* * **
514480 GGAGATTGTTACGAGAATCAATGCTTGCCTTATTT-AAGGAATGAACTTTGATTTCAAGGAAAAT
66 GGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAAGG-ATGAACATTGATTTTTAGGAAAAT
* * * * *
514544 AGGACAAAGAAAAGATTTTCATGCAAAAGAAAATCGTCCATATCATTTATCCTAAGGACGAGAAT
130 AGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * * *
514609 AAGTTTATACTGCCTAATCACAAAGAGAATGAAGAACATTACTAGAATCCACGTTTGTCACAACT
195 ATGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAA-T
* * * *
514674 T-AGGCACGAACTTAAACTTTGCAAAAATTGGCGAGAAGAAAGCCTTTCTTATGAAACCAAAGCA
259 TGAGGCACGAACTTAGACTTTACAAAAATTGGTG-GAAGAAAGCCTTTCTTACGAAACCAAAGCA
* *
514738 TCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGATTGGGGAT
323 TCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* *
514803 TAGTATGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGATTGAA
388 TAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGATTGAA
* * *
514868 AGAAATGCTTTTCTTGTGACACCAAA-CATCTATGTCATCTATCCTAATGAAAGGAATGTGTTTT
453 AGAAATGCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTT
* * * * *
514932 TTGGTTCCCAATCTTGAAAAAAGTGGAGAGTGTTATGAGAATCAATGGTTGCCTTATTTAACGGA
518 TTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAAGGA
* *
514997 TGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAATACCATCAATA
583 TGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATA
* * * * * *
515062 TCATTTATCCTAATGAGGAGAATATATTCATAGTGTCTAATCACAAAGTGAGTGAAGATCATCAC
648 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTAC
* * * *
515127 TAGAATCCTAGTTTGTCACAATTGAGGCATGAACTTAGGCTTCACAAAAACTGGTGGGAAGAAAG
713 TAGAATCCTAGTTTGTCACAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAG
* * * * * * *
515192 CCTTTCATATGAAACGAAAGCTTCAATACCGTGCATCCTTATTAGAAGACTAAGTTTATGGTGCC
778 CCTTTCTTCTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCC
* * * * *
515257 AAATCCTGAAAAGAATGAGGATTAGTGTGATTATTCATGTTTTTCTTATTTATGAGACAAACTTT
843 TAATCCTGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * *
515322 GATTTTATAAAAAACT-ATTGAAAGAAATGCTTTTCTTGTGTCA-C
908 GATTTTATAAAAAA-TGGTTGAAAGAAATGCTTTTCTTGCGACACC
*** *
515366 AAATTGTCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTTGGTTTCCAATCTTGAAAAGAG
1 AAAGCATCAATGTCATATATCCTAATGAAAGGAATGTG-TTTTTGGTTCCCAATCTTGAAAAGAG
* * * *
515431 TAGAGATTGTTACGAAAATCAATGCTTGCCTTATTTAAAGGATGAACATTGATTTTTAGGAAAAA
65 TGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAAGGATGAACATTGATTTTTAGGAAAAT
* * *
515496 AGGGCAAAGAGAAGATTTTCATGCAAAAGCAAATCATCAATATCATTTATCCTAATGAGAAG-A-
130 AGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * * *
515559 ATG----T-GT---T--T-ATAAAGAGAATGAAGAACATTACTAGAATCCACGTTTGTCATAACT
195 ATGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAA-T
** * * *
515613 T-AGGTGCGAACTTAAACTTTGCAAAAATTGGCAGGAAGAAAGCCTTTCTTACGAAACCAAAGCA
259 TGAGGCACGAACTTAGACTTTACAAAAATTGG-TGGAAGAAAGCCTTTCTTACGAAACCAAAGCA
* * * *
515677 TCAATATCGTGTATCATTATTAGAAGACTAAGTTTATGGTGCCTAGTACTGAAAAGATTGGGGAT
323 TCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * **
515742 TAGTATGACTATTCACGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGCTGAA
388 TAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGATTGAA
* * * *
515807 AAAAATGCATTTCGTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAAGGAACGTGTTTT
453 AGAAATGCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTT
* * *
515872 TTGGTTCCCAAACTTGAAAAGAGTAGAGACTGTTACGAGAATCAATACTTGCCTTATTTAAAGGA
518 TTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAAGGA
* ** * * * *
515937 TAAACAATAATTTTTAGGAAAATAGGGCAAA-AAAAGATTTCCATACAAAAGAAAATCATCAATA
583 TGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATA
* * * * * *
516001 TCATTTATCCTAATGAGGAAAATGTGTTTATGGTGCCTAAACATAAAGTGAATAAAGATCGTTAC
648 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTAC
*
516066 TAGAATCC-ATGTTTGTCACAATTGAGGCACGAACTTAGACTTTATAAAAA-TGGTTGGGAAGAA
713 TAGAATCCTA-GTTTGTCACAATTGAGGCACGAACTTAGACTTTACAAAAATTGG-TGGGAAGAA
* * ** * *
516129 AGCCTTTTTTAC-GAAACAAAAGTGTCAATATCGTGTATCCATATGAGAAGACTAAGTTTATAGT
776 AGCCTTTCTT-CTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGT
* * * * * *
516193 GCCTAATCCTAAAAAAAAATGGGGATCAGTATGGCTATTCATGTTTGTCTTACTTAAGAGACAAA
840 GCCTAATCCT-GAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAA
* * *
516258 CTTTGATTCTATAAAAAACGGTTGAGAGAAATGCTTTTCTTGCGACACC
904 CTTTGATTTTATAAAAAATGGTTGAAAGAAATGCTTTTCTTGCGACACC
* * *
516307 AAACCATCAATGTTATATATCCTAAGGAAAGGAATGTGTTTTTTGGTTCCCAATCTTGAAAAGAG
1 AAAGCATCAATGTCATATATCCTAATGAAAGGAATGTG-TTTTTGGTTCCCAATCTTGAAAAGAG
*
516372 TGGAAACTGTTACGAGAATCAATGCTTGCCTTATTTAAAGGATGAACATTGATTTTTAGGAAAAT
65 TGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAAGGATGAACATTGATTTTTAGGAAAAT
* * ** *
516437 AGGGCAAACAAAAGATTTTCATGCAAAAGAAAATCTTCTTTATCATTTATCCTAATAAGGAGAAT
130 AGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
** * * *
516502 GCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAAAATCCTTGTTTGTCACAATT
195 ATGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATT
* * * * *
516567 GAGGCACGAACTTAGTCTTTTCAAAAATTGGTGGAAAACAAGCCTTTCTTACGAAACCGAAGCTT
260 GAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAGA-AAGCCTTTCTTACGAAACCAAAGCAT
* * * * **
516632 CAATTTCCTGCATCCTTATTAGAAGACTAAGTTTATGGTGCCAAATCCTGAAAAGAATAAGGATT
324 CAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
* * *
516697 AGTATGATTATTCATGTTTGT-TTAATTTAAGAGACAAAGTTTGATTCTATAAAAAACGATTGGA
389 AGTATGACTATTCATGTTTGTCTT-ATTTAAGAGACAAACTTTGATTCTATAAAAAACGATTGAA
* * * * * *
516761 AGAAATGCATTTCTTGTGACACGAAATCATCAATGTCATATATCCTAATAAAAGGAATGTCTTTT
453 AGAAATGCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTT
* * * * *
516826 TTGGTTCCCAATCTTGAAAAGAGTTGAGAGTGCTATGAGAATCAATGGTTGCCTTATTTAAAGGA
518 TTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAAGGA
*
516891 TGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAATA-CAATCAAT
583 TGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC-ATCAAT
* *
516955 ATCATTTATCCTAATGAGGAGAATATGTTTGTAGTGCCTAATCAC-AAGTGAATGAAGATCATTA
647 ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTA
* * * *
517019 CTAGAATCCTAGTTTTTCACAGTTGAGGCACGAACTTAGGCTTTACAAAAACTGGTGGGAAGAAA
712 CTAGAATCCTAGTTTGTCACAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAA
* * * * *
517084 GCCTTTCTTCTGAAACCAAAGCTTCAATATCGTGCATCCTTATTAGAAAAATAAGTTTATGGTGC
777 GCCTTTCTTCTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGC
* *
517149 CAAATCCTGAAAAGAATGAGGATTAGTATGATTATTCATGTTTGTCTTATTTAAGAGACAAACTT
842 CTAATCCTGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * *
517214 TGATTTTATAAAAAATGATTGAAAAAAATGCTTTTCTTACGGCACC
907 TGATTTTATAAAAAATGGTTGAAAGAAATGCTTTTCTTGCGACACC
* * *
517260 AAATCGTCAATGTCATATATCCCAATGAAAGGAATGTGTTTTTTGGTTCCCAATCTTGAAAAGAG
1 AAAGCATCAATGTCATATATCCTAATGAAAGGAATGTG-TTTTTGGTTCCCAATCTTGAAAAGAG
*
517325 TGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAAGGATGAACATTGATTTTTAGGAAAAT
65 TGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAAGGATGAACATTGATTTTTAGGAAAAT
* * *
517390 AGGGCAAAGAAAATATTTTCATGCAAAAGCAAATCATCAATATCATTTACCCTAATGAGGAGAAT
130 AGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * * *
517455 GTGTTTCTTA-TGCCTAATAACGAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTTACAAT
195 ATGTTT-ATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAAT
* * * * * *
517519 TGAGGCATGAACTTAGACTTTACGAAAATTGTTAGGAAGAAAGCCTTTCTTTCAAAACAAAAGCA
259 TGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGAAGAAAGCCTTTCTTACGAAACCAAAGCA
* * * *
517584 TCAATATCATTTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGGGGAT
323 TCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * * *
517649 TAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTCATTCTATCAAAAACGGTTGAA
388 TAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGATTGAA
* * *
517714 AGAAATGCTTTTCTTGCGACACCAAATCGTCAATGTCATATATCCTAATGAAAGCAATGTGTTTT
453 AGAAATGCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTT
* ** *
517779 TTGGTTCCCAATCTTGAAAAGCA-TGGAGACTATTATAAGAATCAATGCTTGCCTTATTTAAGGG
518 TTGGTTCCCAATCTTGAAAAG-AGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAAGG
* * * ** *
517843 ATAAACTTTAATTTTATGGCAAATAGGGCAAAGAAAGGATTTCCATGCAAAAGAAAATCATCAAT
582 ATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
* ** * *
517908 ATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCACAAAAAGAATGTACATCATTA
647 ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTA
* * * * * * *
517973 CTAGAATCC-ATGGTTGTCATAATTGACGCACAAACTTAGACTTCAAAAAAATTGGTGAGAAGAA
712 CTAGAATCCTA-GTTTGTCACAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAA
* * *
518037 AGCCTTTCTT-TCAAAACCAAAGCATCAATATCGTGTATGCTTATGAGAAGACTAAGTTTAAGGT
776 AGCCTTTCTTCT-GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGT
* * * * * * *
518101 ACCTAAT-CTAGAAAAGAATGGGGATTAGTATGGCTATTCTTGTTTGCCTTATATAAAAGACAAA
840 GCCTAATCCT-GAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAA
* * * * *
518165 CTTTGATTTTATCAAAAATGGTTGAAAAAAATGCTTTTCTTGCAATATC
904 CTTTGATTTTATAAAAAATGGTTGAAAGAAATGCTTTTCTTGCGACACC
* * * * *** * *
518214 AAAGCGTCAATGTCGTGTATCCTACTGAAAGGAATGTGTTTCCAGTTCCCAATCATGAAAAGAAT
1 AAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAGT
*
518279 GGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACATTGGA-TTTTAGGAAAAT
66 GGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAAGGATGAACATT-GATTTTTAGGAAAAT
* * * * *
518343 AGGTCAAAGAATAGATTTCCATGCAAAAGAATACCATCAATATCATTTATCCTAATGAGGAGAAT
130 AGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* *
518408 ATGTTTATAGTGCTTAATCACAAAGTGAATGAAGATCATTACTAGAATCC-TAGTTTGTCACAAC
195 ATGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCAT-GTTTGTCACAAT
* * * *
518472 TGAGGCACGAACTTAGGCTTTACAAAAAATTGGTGGGAAAAAAGCCTTTCTTACAAAACCAATGC
259 TGAGGCACGAACTTAGACTTTAC-AAAAATTGGT-GGAAGAAAGCCTTTCTTACGAAACCAAAGC
* * * *
518537 TTCAATATCATGAATCCTT-TCTAGAAGACTAAGTTTATGGTGCCTAATCCT-ACAAAGAATAGG
322 ATCAATATCGTGTATCCTTAT-TAGAAGACTAAGTTTATGGTGCCTAATCCTGA-AAAGAATGGG
* * * *
518600 GATTAGTATGATTATTCATGTTTGTCTTTTTTGAA-AGGA-AAACTTTGATTTTATCAAAAACGA
385 GATTAGTATGACTATTCATGTTTGTCTTATTT-AAGA-GACAAACTTTGATTCTATAAAAAACGA
* * * * *
518663 TTGAAA-AAATGCTTTTCTTGGGACACCAAAGTGA-CAACGTCATGTATCCTAACGAAAGGAATG
448 TTGAAAGAAATGCTTTTCTTGCGACACCAAAG-CATCAATGTCATATATCCTAATGAAAGGAATG
* * ** *
518726 TG-TTTCTGGTTCCTAATCTTGAGGAGAGTGGAGACTGTTACGAGAATCAATGCCTGCCTTATTT
512 TGTTTTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTT
* * * * * *
518790 AAGGGATGAACTTTAATTTTATGAAAAATAGGGCAAGGAAAAGATTTCCAAGCAAAAGAAAAACA
577 AAAGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
* * * ** *
518855 TTAATATCATTTATCATAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAAAGAATG-TGCA
642 TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAGTGAATGAAG-A
* * * * *
518919 TCATTACTAGAATCCATAG-TTATCACAATTAACGCACAAACTTAGACTTCACAAAAATTGGTGG
706 TCATTACTAGAATCC-TAGTTTGTCACAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
*
518983 GAA-AAAACCTTTCTT-TCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAAGTT
770 GAAGAAAGCCTTTCTTCT-GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAAGTT
* * * * *
519046 TAAGGTACCTAAT-CTAGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGCCTTATATAAGA
834 TATGGTGCCTAATCCT-GAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA
* ** *
519110 GACAAACTTTGATTTTATAAAAAATGGTTGAAAAAAATGCTTTTCTTGTAATA-C
898 GACAAACTTTGATTTTATAAAAAATGGTTGAAAGAAATGCTTTTCTTGCGACACC
* * * * * *
519164 AAAGCATCAATGTCATGTATCCTACTGAAAGGAATGTGTTTCTGGTTCCCAATCATAAAAAGAAT
1 AAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAGT
* * * * * *
519229 GGAGACTGTTATGAGAATCAATGCTTGCCTTATATAACA-GATAAACTTTGATTTTAAAGAAAAT
66 GGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAA-AGGATGAACATTGATTTTTAGGAAAAT
* * *
519293 AGGGCAAAGAAAA-AATTTCTATGCAAAAGAAAATCATCAATATCATTTATCTTAATGAAGAGAA
130 AGGGCAAAGAAAAGATTTTC-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * * **
519357 TGTGTTTATAGTGCCTAATCACAAAGGGAATGAAGAACATTACTAGAATCCACATTTGTCACAAC
194 TATGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAA-
* *
519422 TT-AGGCACGAACTTAGACTTTGCAAAAATTGGCGAGAAGAAAGCCTTTCTTACGAAACCAAAGC
258 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTG-GAAGAAAGCCTTTCTTACGAAACCAAAGC
* * * * * * * **
519486 ATCAAAACCGTGCATCCCTTATTAGAAAATTAAGTTTATGGTGCCTAATACTGAAAAGATTTTGG
322 ATCAATATCGTGTAT-CCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGG
* * *
519551 ATTAGTAAGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATAAAAACCGATTG
386 ATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGATTG
* * * *
519616 AAAGAAATGCTTTTCTTGTGACACCGAAGCATCAATGTCAAATATCCTAATG-ACGGAAATGTGT
451 AAAGAAATGCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAAGG-AATGTGT
* *
519680 TTTTTGGTTCCCAAACTTGAAAAGAGTGGAAACTGTT
515 TTTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTT
519717 TGATGACAAC
Statistics
Matches: 5446, Mismatches: 706, Indels: 204
0.86 0.11 0.03
Matches are distributed among these distances:
938 4 0.00
939 443 0.08
940 203 0.04
941 174 0.03
942 2 0.00
943 1 0.00
945 1 0.00
946 1 0.00
947 1 0.00
948 3 0.00
949 55 0.01
950 454 0.08
951 671 0.12
952 746 0.14
953 1305 0.24
954 903 0.17
955 405 0.07
956 74 0.01
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (952 bp):
AAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAGT
GGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAAGGATGAACATTGATTTTTAGGAAAATA
GGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATA
TGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTG
AGGCACGAACTTAGACTTTACAAAAATTGGTGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCA
ATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG
TATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGATTGAAAGA
AATGCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTTG
GTTCCCAATCTTGAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAAGGATGA
ACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
TTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAG
AATCCTAGTTTGTCACAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCT
TTCTTCTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAA
TCCTGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
TTTATAAAAAATGGTTGAAAGAAATGCTTTTCTTGCGACACC
Found at i:517935 original size:160 final size:159
Alignment explanation
Indices: 517260--517950 Score: 410
Period size: 160 Copynumber: 4.3 Consensus size: 159
517250 TTACGGCACC
* * * * *
517260 AAATCGTCAATGTCATATATCCCAATGA-AAGGAATGTGTTTTTTGGTTCCCAATCTTGAAAAGA
1 AAATCATCAATATCATTTATCCTAATGAGAA-GAATGTGTTTTTTGGTGCCCAATCTTGAAAAGA
* ** * * * *
517324 GTGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAAGGATGAACATTGATTTT-TAGGAAA
65 ATGGAGACTATTATAAGAATCAATGCTTGCCTTATTTAAGGGATAAACTTTAATTTTAT-GGAAA
**
517388 ATAGGGCAAAGAAAATATTTTCATGCAAAAGC-
129 ATAGGG-AAAGAAAGGATTTTCATGCAAAA-CA
* * * * * *** **
517420 AAATCATCAATATCATTTACCCTAATGAGGAGAATGTGTTTCTT-ATGCCTAATAACGAAGTGAA
1 AAATCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTTTTGGTGCCCAATCTTGAAAAGAA
* * * * * * * * *
517484 TGAAGA-TCATTACT-AGAATCCATGTTTG--TTACAATTGAGGCATGAAC-TTAGACTTTA-CG
66 TGGAGACT-ATTA-TAAGAATCAATGCTTGCCTT--ATTTAAGGGATAAACTTTA-ATTTTATGG
* ** * *
517543 AAAATTGTTAGG-AAGAAA-GCCTTTCTTTCAAAACA
126 AAAATAG---GGAAAGAAAGGATTTTCATGCAAAACA
* * * ** * * * *
517578 AAAGCATCAATATCATTTATCCTTATGAGAAGACTAAG-TTTATGGTGCCTAATCCTAAAAAGAA
1 AAATCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTTTTGGTGCCCAATCTTGAAAAGAA
* * * ** * * * * * * *
517642 TGGGGATTAGTATGACTATTC-ATGTTTGTCTTATTTAAGAGATAAACTTTCATTCTAT-CAAAA
66 TGGAGACTATTAT-AAGAATCAATGCTTGCCTTATTTAAGGGATAAACTTTAATTTTATGGAAAA
* * * * * *
517705 -ACGGTTGAAAGAAATGCTTTTCTTGCGACACC
130 TA-GG--GAAAGAAAGGATTTTCATGCAAAACA
* * * * *
517737 AAATCGTCAATGTCATATATCCTAATGA-AAGCAATGTGTTTTTTGGTTCCCAATCTTGAAAAGC
1 AAATCATCAATATCATTTATCCTAATGAGAAG-AATGTGTTTTTTGGTGCCCAATCTTGAAAAGA
*
517801 ATGGAGACTATTATAAGAATCAATGCTTGCCTTATTTAAGGGATAAACTTTAATTTTATGGCAAA
65 ATGGAGACTATTATAAGAATCAATGCTTGCCTTATTTAAGGGATAAACTTTAATTTTATGGAAAA
* *
517866 TAGGGCAAAGAAAGGATTTCCATGCAAAAGA
130 TAGGG-AAAGAAAGGATTTTCATGCAAAACA
* * *
517897 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTG-TTTATGGTGCCTAATC
1 AAATCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTTTTGGTGCCCAATC
517951 ACAAAAAGAA
Statistics
Matches: 388, Mismatches: 112, Indels: 63
0.69 0.20 0.11
Matches are distributed among these distances:
155 1 0.00
157 8 0.02
158 106 0.27
159 115 0.30
160 147 0.38
161 10 0.03
162 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (159 bp):
AAATCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTTTTGGTGCCCAATCTTGAAAAGAA
TGGAGACTATTATAAGAATCAATGCTTGCCTTATTTAAGGGATAAACTTTAATTTTATGGAAAAT
AGGGAAAGAAAGGATTTTCATGCAAAACA
Found at i:524715 original size:12 final size:12
Alignment explanation
Indices: 524700--524776 Score: 53
Period size: 12 Copynumber: 6.9 Consensus size: 12
524690 TCTATTATCT
524700 CTCCTATCTCTC
1 CTCCTATCTCTC
*
524712 CTCCTGTCATC-C
1 CTCCTATC-TCTC
524724 CTCCTA--TCT-
1 CTCCTATCTCTC
*
524733 CTACTATCT-T-
1 CTCCTATCTCTC
*
524743 -TCCTATCTTTC
1 CTCCTATCTCTC
524754 CTCCTATCATC-C
1 CTCCTATC-TCTC
524766 CTCCTATCTCT
1 CTCCTATCTCT
524777 TTTTTCTCTT
Statistics
Matches: 51, Mismatches: 5, Indels: 18
0.69 0.07 0.24
Matches are distributed among these distances:
9 14 0.27
10 2 0.04
11 3 0.06
12 29 0.57
13 3 0.06
ACGTcount: A:0.12, C:0.44, G:0.01, T:0.43
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:524723 original size:42 final size:42
Alignment explanation
Indices: 524666--524785 Score: 168
Period size: 42 Copynumber: 2.9 Consensus size: 42
524656 TTTCTTCTCT
* *
524666 TCTCCTCCTGTCATCCATCCTCTCTCTATTATCTCTCCTATC
1 TCTCCTCCTGTCATCCCTCCTATCTCTATTATCTCTCCTATC
* *
524708 TCTCCTCCTGTCATCCCTCCTATCTCTACTATCTTTCCTATC
1 TCTCCTCCTGTCATCCCTCCTATCTCTATTATCTCTCCTATC
* * * *
524750 TTTCCTCCTATCATCCCTCCTATCTCTTTTTTCTCT
1 TCTCCTCCTGTCATCCCTCCTATCTCTATTATCTCT
524786 TTAAGGGCTA
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.11, C:0.42, G:0.02, T:0.46
Consensus pattern (42 bp):
TCTCCTCCTGTCATCCCTCCTATCTCTATTATCTCTCCTATC
Found at i:527889 original size:477 final size:478
Alignment explanation
Indices: 526392--533210 Score: 8133
Period size: 477 Copynumber: 14.3 Consensus size: 478
526382 GGTTTTCATC
* *
526392 ACTGTTACGAGAATCAATG-TCTGCCTTATTTAAAGGATGAACATTGA-TTTTAGGAAAATAGGA
1 ACTGTTATGAGAATCAATGCT-TGCCTTATTTAAAGGATGAACATTGATTTTTAGGAAAATAGGG
* * * *
526455 CAAAGAAAAGATTTTCGTGGAAAAGAAAATC-TTCCATATCATTTATCCTAATGTGGAGAATGTG
65 CAAAGAAAAGATTTTCATGCAAAAGAAAATCATTCAATATCATTTATCCTAATGAGGAGAATGTG
* * ** * *
526519 TTTATAGTGCCTAATCACAAAGGGAGTGAAGAAAATTACTAGAATCTACGTTTGTCACAACTT-A
130 TTTATAGTGCCTAATCACAAAAGGAATGAAGATCATTACTAGAATCCATGTTTGTCACAA-TTGA
* * * *
526583 GGCACGAACTT-GACTTTGCAAAAATTAGTAGGAAGAAAGCCTTTCTTACGAAACCAAAACATCA
194 GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCA
* *
526647 ATATCGTGTATCCTTTTTAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGATTGGGGATTAG
259 ATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG
* *
526712 TATGACTATTCATGTTTATCTTATTTAAGAGACAAACATTGATTCTATAAAAAACGGTTGAAAGA
324 TATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGAAAGA
* * * * * *
526777 AATGCTTTTCATGTAACACCAAAGCATCAAT-TCTTATATCCTATTGAAAGAAATGCGTTTTTTG
389 AATGCTTTTCTTGTGACACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTTG
*
526841 GTTCCCAATCTTGAAAAAAGTGGAG
454 GTTCCCAATCTTGAAAAGAGTGGAG
* *
526866 ACTGTTATGAGAATCAATGCTTGCCTTATTTAAAGGATGAACATTGATTTTTAGGGAAATAGGAC
1 ACTGTTATGAGAATCAATGCTTGCCTTATTTAAAGGATGAACATTGATTTTTAGGAAAATAGGGC
* *
526931 AAAGAAAAGATTTTCATGCAAAAGAAAATC-TTCCATATCATTTATCCTAATGAGGAGAATGCGT
66 AAAGAAAAGATTTTCATGCAAAAGAAAATCATTCAATATCATTTATCCTAATGAGGAGAATGTGT
* * * * * *
526995 TTACAGTGCCTAATCACAAAAAGAATGTACATCATTACTAGAATCCATGGTTGTCACAATTGATG
131 TTATAGTGCCTAATCACAAAAGGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGG
* * * * * *
527060 CACAAACTTAGACTTTACAAAAATTGGTCGAAAGAAAGCCTTTATTTCGAAACCAAAGCACCAAT
196 CACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAAT
* * * * *
527125 ATCGTTATATCCTTATGAGAAGACTAAGTTTAAGGTACCTAAT-CTAGAAAAGAATAGGGATTAG
261 ATCG-TGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAG
* * * * *
527189 TATGACTATTCATGTTTGCCTTATATAAGAGACAAACTTTGATTTTATCAAAAACGGTTGAAAAA
324 TATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTG-AAAG
*** * *
527254 AAATGCTTTTCTTACAATACCAAAGCATCAATGTCATGTATCCT-ATAGAAAGGAATGTG-TTTT
388 AAATGCTTTTCTTGTGACACCAAAGCATCAATGTCATATATCCTAAT-GAAAGGAATGTGTTTTT
* *
527317 TGGTTCCCAATCATGAAAAGAATGGAG
452 TGGTTCCCAATCTTGAAAAGAGTGGAG
* * * * * *
527344 ACTATTATGAGAATCAATGCTTACTTTATTTAAGGGATGAAC-TTTAATTTTATGGAAAATAGGG
1 ACTGTTATGAGAATCAATGCTTGCCTTATTTAAAGGATGAACATTGATTTTTA-GGAAAATAGGG
* * *
527408 CAAAGAAAAGATTTCCATGCAAAAGAAAATCATT-AATATCATTTATCTTAATGAGGAGAATGTA
65 CAAAGAAAAGATTTTCATGCAAAAGAAAATCATTCAATATCATTTATCCTAATGAGGAGAATGTG
* * * *
527472 TTGATAGTGCCTAATCACAAAAGGAATGAAGAACATCACTAGAATCCATCTTTGTCACAACTT-A
130 TTTATAGTGCCTAATCACAAAAGGAATGAAGATCATTACTAGAATCCATGTTTGTCACAA-TTGA
* * ***
527536 GGCACGAAATTAGACTTTGCAAAAATTGGCAAGAAGAAAGCCTTTCTTACGAAACCAAAGCATCA
194 GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCA
** *
527601 ATATCGTGTATCCTTATTAGAAGACTAAGTTTATATTGCCTAATCCTGAAAAGATTGGGGATTAG
259 ATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG
*
527666 TATGACTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGAAAGA
324 TATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGAAAGA
* * * *
527731 AATGCTTTT-TTGGTGGCACCAAATCATCATTGTCATATATCCTAATGTAAGGAATGTGTTTTTT
389 AATGCTTTTCTT-GTGACACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTT
* *
527795 GGTTCCTAATCTTGAAAAGAGTGGAC
453 GGTTCCCAATCTTGAAAAGAGTGGAG
* * * * *
527821 ATTATTACGAGAATCAATGCTTGCCTTATTTAAAGGATGAACATTGATTTTTAAGAAAATAAGGC
1 ACTGTTATGAGAATCAATGCTTGCCTTATTTAAAGGATGAACATTGATTTTTAGGAAAATAGGGC
* ** * * *
527886 AAAGTAAAGATTTTCATGCAAAA-AAAAAAATACCAATATCATTTATCTTAATTAGGAGAA-GTG
66 AAAGAAAAGATTTTCATGCAAAAGAAAATCAT-TCAATATCATTTATCCTAATGAGGAGAATGTG
* * * * * *
527949 TTTATAATGCCTAATCACGAAAGGAATGGAGAACATTACTAGAATCCAAGTTTTTCACAACTT-A
130 TTTATAGTGCCTAATCACAAAAGGAATGAAGATCATTACTAGAATCCATGTTTGTCACAA-TTGA
* * * *
528013 GGCATGAACTTAGACTTTGCAAAAATTGATGGGAAGAAAGTCTTTCTTAC-AAAGCCAAAGCATC
194 GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAA-CCAAAGCATC
*
528077 AATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGATTGGGGATTA
258 AATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
* *
528142 GTATGACTATTCATGTGTT-TTTTATTTAAGAGATAAACTTTGATTCTATAAAAAACGGTTGAAA
323 GTATGACTATTCATGT-TTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGAAA
* * * * *
528206 GAAATGCTTTTCTTATGATACCAAAGCATCAATGTCTTATATCCAAATAAAAGGAATGTGTTTTT
387 GAAATGCTTTTCTTGTGACACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTT
*
528271 TGGTTCCCAATCTTGAAAAGAGTGGAA
452 TGGTTCCCAATCTTGAAAAGAGTGGAG
* * * * * *
528298 ACTGTTACGAGAATAAATGTTTGCTTTATTTAAGGGAAGAACATTGATTTTTAGGAAAATAGGGC
1 ACTGTTATGAGAATCAATGCTTGCCTTATTTAAAGGATGAACATTGATTTTTAGGAAAATAGGGC
* * **
528363 AAAGAAAAAATTTTCATGCAAAAGAAAATC-TTCCATATCATTTATCCTAACAAGGAGAATGTGT
66 AAAGAAAAGATTTTCATGCAAAAGAAAATCATTCAATATCATTTATCCTAATGAGGAGAATGTGT
* * ** * * **
528427 TTATAGTGCCTTATCACAAAGGGAGCGAAGAACATTACCAGAATCCACATTTGTCACAACTT-AG
131 TTATAGTGCCTAATCACAAAAGGAATGAAGATCATTACTAGAATCCATGTTTGTCACAA-TTGAG
* ** *
528491 GCACGAACTTAGACTTTGCAAAAATTGG-CAGAAGGAAAGCCTTTCTTACGAAACCAAAGCAACA
195 GCACGAACTTAGACTTTACAAAAATTGGTGGGAA-GAAAGCCTTTCTTACGAAACCAAAGCATCA
* * **
528555 ATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCTTGAAAAGATTAAGGATTAG
259 ATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG
* *
528620 TATGACTATTCATGTTTGTCTTATTCAAGAGACAAACTTTGATTCTATAAAAAACAGTTGAAAGA
324 TATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGAAAGA
*
528685 AATGCTTTTCTTGGGACACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTTG
389 AATGCTTTTCTTGTGACACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTTG
528750 GTTCCCAATCTTGAAAAGAGTGGAG
454 GTTCCCAATCTTGAAAAGAGTGGAG
* *
528775 ACTGTTATGAGAATCAATGATTGCCTTAATTAAAGGATGAACATTGATTTTTAGGAAAATAGGGC
1 ACTGTTATGAGAATCAATGCTTGCCTTATTTAAAGGATGAACATTGATTTTTAGGAAAATAGGGC
* * * * * *
528840 AAAGAAAAGATTATAATGCAAAACAAAAT-ATTCCATATCATTTATCCTAATAAGGAGAATGCGT
66 AAAGAAAAGATTTTCATGCAAAAGAAAATCATTCAATATCATTTATCCTAATGAGGAGAATGTGT
* * * * * *
528904 TTATTGTGCTTAATCACAAAATGCATGAAGATCATTACTAGAATCCTTGTTTGTCACAATTCAGG
131 TTATAGTGCCTAATCACAAAAGGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGG
* * * *
528969 CATGAATTTATG-CATTT-CAAAAATTGGTGGGATGAAAGCCTTTCTTACGAAACCAAAGCCTCA
196 CACGAACTTA-GAC-TTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCA
* * * * * * * *
529032 ATTTCATGCATCCTTATTAGAAGACTAAGTTTATGGTGCCAAATCCCGAAAAGAAAGAGAATTAG
259 ATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG
* * * * * * * * *
529097 TATGATTATTCATATTTGTCTTATTTAAAAGATAAACTTTGATTCTGTAAAAAATGATTGGAACA
324 TATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGAAAGA
* *
529162 AATGCTTTTCTTGTGACACCAAATCATCAATGTCATATATCCTAATGAAAGGAATGTATTTTTTG
389 AATGCTTTTCTTGTGACACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTTG
529227 GTTCCCAATCTTGAAAAGAGTGGAG
454 GTTCCCAATCTTGAAAAGAGTGGAG
* * * * * * * * *
529252 AGTGTTACGAGAATCAACGCTTGCATTATTTAAGGGATGAGCTTTGATTTTAAGGAAAATAGGAC
1 ACTGTTATGAGAATCAATGCTTGCCTTATTTAAAGGATGAACATTGATTTTTAGGAAAATAGGGC
** * * * ** *
529317 AAAGAAAAGATTTTCACACAAAAGCAAATTA-TCAGTATCATTTATCCTAATGAGGAGAACATAT
66 AAAGAAAAGATTTTCATGCAAAAGAAAATCATTCAATATCATTTATCCTAATGAGGAGAATGTGT
* * * * *
529381 TTATTGTGCCTAATAAC-AAAGTGAATGAAGGTCATTACTGGAATCCATGTTTGTTACAATTGAG
131 TTATAGTGCCTAATCACAAAAG-GAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAG
** * * * * * * *
529445 GCATAAACTTAGACTTTAAAAAAATTGTTAGGAAGAAAGCATTTGTTTCAAAACCAAAGCATCAA
195 GCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAA
* * * *
529510 TATCGTGCATCCTTATAAGAGGACTAAGTTTATGGTGCCT-ATCCTAAAAAGAATGGGGATTAGT
260 TATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGT
* * *
529574 ATGACTATTCATGTTTGTCTTATTTAACAGACAAACTTTGATTCTATAAAAAGCAGTTGAAAGAA
325 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGAAAGAA
** * * * *
529639 ATGCTTTTCTTGCCACACCACAGCATCAACGTCAAATATCCTAATGAAAGAAATGTGTTTTTTGG
390 ATGCTTTTCTTGTGACACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTTGG
* * *
529704 TTCCCAATCATGAAAAGAATAGAG
455 TTCCCAATCTTGAAAAGAGTGGAG
* * *
529728 ACCGTTATGAGAATCAATGCTAGCCTT-TTT-AAGTGATGAAC-TATGATTTTCAGGAAAATAGG
1 ACTGTTATGAGAATCAATGCTTGCCTTATTTAAAG-GATGAACAT-TGATTTTTAGGAAAATAGG
* * * *
529790 GCAAGGAAAAGATTTTCATGAAAAAGAAAATC-TTCCATATCATTTATCCTAACGAGGAGAATGT
64 GCAAAGAAAAGATTTTCATGCAAAAGAAAATCATTCAATATCATTTATCCTAATGAGGAGAATGT
* * *
529854 GTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACTAGAATCCATGGTTGTCACAATTAA
129 GTTTATAGTGCCTAATCACAAAAGGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGA
* * *
529919 GGCACAAACTTAGACTTTACAAAAATTTGTGGGAAGAAAGCCTTTCTTTCGAAACCAAAGCATCA
194 GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCA
** * *
529984 ATATCGTGTATCCTCCTGAGAAGACTAAGTTTAAGGTGCCTAAT-CTAGAAAAGAATGGGGTTTA
259 ATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCT-GAAAAGAATGGGG---A
* * * * * * *
530048 GTTTAAGCCTTTCTTACAAAAATTCATGTTTGCCTAATTTTAGAGACAAACTTTGATTCTATCAA
320 --TT-AG----TATGAC---TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAA
* * * * * *
530113 AAATGGTTGAAAGAAATGCTTTTCTTGCGACCCCAAATCATCACTGTCATGTATCCTAATGAAAG
375 AAACGGTTGAAAGAAATGCTTTTCTTGTGACACCAAAGCATCAATGTCATATATCCTAATGAAAG
* * * *
530178 GAATGTG-TTTCTGGTTCCCAATCATGAAAAGAATAGAG
440 GAATGTGTTTTTTGGTTCCCAATCTTGAAAAGAGTGGAG
* * * *
530216 ACCGTTATGAGAATCAATGCTAGCCTT-TTTTAAGTGATGAAC-TATGATTTTCAGGAAAATAGG
1 ACTGTTATGAGAATCAATGCTTGCCTTATTTAAAG-GATGAACAT-TGATTTTTAGGAAAATAGG
* * * *
530279 GCAAGGAAAAGATTTTCATGAAAAAGAAAATC-TTCCATATCATTTATCCTAACGAGGAGAATGT
64 GCAAAGAAAAGATTTTCATGCAAAAGAAAATCATTCAATATCATTTATCCTAATGAGGAGAATGT
* * * * *
530343 GTTAATAGTGCCTAATCACAAAAAGAATGAAGATCATTACTAGAATCAATGGTTGTCACAATCGA
129 GTTTATAGTGCCTAATCACAAAAGGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGA
* *
530408 GGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTTCGAAACCAAAGCATCA
194 GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCA
* ** * *
530473 ATATCATGTATCCTCCTAAGAAGACTAAGTTTAAGGTGCCTAAT-CTAGAAAAGAATGGGG-TCT
259 ATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGAT-T
* * * * * * *
530536 AGTTTGACTATTCATGTTTGCCTAATTTTAGAGACAAACTTTGATTCTATCAAAAATGATTGAAA
322 AGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGAAA
* * * * * * *
530601 GAAATGCTTTCCTTGCGCCACTAAATCATCAATGTCATGTATCCTAATGAAAGGAATGTG-TTTC
387 GAAATGCTTTTCTTGTGACACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTT
* *
530665 TGCTTCCCAAT-TACGAAAAGAGTGGAG
452 TGGTTCCCAATCT-TGAAAAGAGTGGAG
* * * * * * *
530692 ACCGTTATGAGAATCAGTGCTAGCCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGC
1 ACTGTTATGAGAATCAATGCTTGCCTTATTTAAAGGATGAACATTGATTTTTAGGAAAATAGGGC
* *
530757 AAAGAAAAGATTTCCATGCAAAAGAAAATCA-TCAATATCATTTAT-CTGAATGACGAGAATGTG
66 AAAGAAAAGATTTTCATGCAAAAGAAAATCATTCAATATCATTTATCCT-AATGAGGAGAATGTG
* * * * * * * *
530820 TTTATAGTGTCTAATCACAAAGGGAGTGAAGAACATTACCAGAATTCA-CTTAGTCACAAATT-A
130 TTTATAGTGCCTAATCACAAAAGGAATGAAGATCATTACTAGAATCCATGTTTGTCAC-AATTGA
* ** * *
530883 GGCACGAACTTACACTTTACAAAAATTGGCAGGAAAAAAGCCTTTCTTATGAAACCAAAGCATCA
194 GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCA
* * * * *
530948 ATATCGTGTGTCTTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAACATTGTGGATTAG
259 ATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG
* * * *
531013 TATGACTCTTCTTGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTTGAAAGA
324 TATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGAAAGA
* * * * * *
531078 AATTCTTTTCTTGCT--CTTCCAAATCATCAATGTCATGTATCCTAATGAAAGGATTGTG-TTTC
389 AATGCTTTTCTTG-TGAC-ACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTT
* * * *
531140 TAGTCCCCAATCATGAAAAGAATGGAG
452 TGGTTCCCAATCTTGAAAAGAGTGGAG
* * * * * * *
531167 ACCGTTGTGGGAATCAATGCTAGCCTTATTTAAAGGATAAACTTTGATTTTAAGGAAAATAGGGC
1 ACTGTTATGAGAATCAATGCTTGCCTTATTTAAAGGATGAACATTGATTTTTAGGAAAATAGGGC
* *
531232 AAAGAAAAGATTTTCATGCAAAAAAAAATCA-TCAATATCATTTATCTTAATGAGGAGAATGTGT
66 AAAGAAAAGATTTTCATGCAAAAGAAAATCATTCAATATCATTTATCCTAATGAGGAGAATGTGT
* *
531296 TTATAGTGCCTAATCAC-AAAGTGAATGAGGATCATTACTAGAAT-CTTAGTTTGTCACAATTGA
131 TTATAGTGCCTAATCACAAAAG-GAATGAAGATCATTACTAGAATCCAT-GTTTGTCACAATTGA
* ** * * *
531359 GGCACGAACTTAGGCTTTACAAAACCTGGTGGGAAGAAAGCTTTTCTTATGAAACCAAAGCTTCA
194 GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCA
* * * * *
531424 ATACCATGCATCCTTATTAGAAGACTAAGTTTATGGTGCCAAATCCTGAAAAGAATGAGGATTAG
259 ATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG
* * * * *
531489 TATGATTATTCATGTTTGTCTTATTTAAGAGACAATCTTTGATTCTACAAAAAATGATTGAAAGA
324 TATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGAAAGA
* *** * *
531554 AATGCTTTTCTTGTGACACAAAATTGTCAATGTCATATATCCCAATGAATGGAATGTGTTTTTT-
389 AATGCTTTTCTTGTGACACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTTG
*
531618 GTTCCCAATCTTGAAAAGAGTGGAT
454 GTTCCCAATCTTGAAAAGAGTGGAG
*
531643 ACTGTTATGGGAATCAATGCTTGCCTTATTTAAAGGATGAACATTGATTTTTAGGAAAATAGGGC
1 ACTGTTATGAGAATCAATGCTTGCCTTATTTAAAGGATGAACATTGATTTTTAGGAAAATAGGGC
* * *
531708 AAAGAATAGATTTTCATGCAAAAGCAAATCA-TCAATATCATTTATCCTAATCAGGAGAATGTGT
66 AAAGAAAAGATTTTCATGCAAAAGAAAATCATTCAATATCATTTATCCTAATGAGGAGAATGTGT
* * * * *
531772 TTATTGTGCCTAATAAC-AAAGTGAATAAAGATCATTGCTAGAATCCATGTTTGTTACAATTGAG
131 TTATAGTGCCTAATCACAAAAG-GAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAG
* * * * * *
531836 GCATGAACTTAGACTTTACAAAAATTGTTAGGAAGAAAGCCTTTATTTCGTAACCAAAGCATCAA
195 GCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAA
* * * *
531901 TATCGTTTATCTTTATGAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGT
260 TATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGT
* * *
531966 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTAATTCTATCAAAAATGGTTGAAAGAA
325 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGAAAGAA
* * * **
532031 ATGCTTTTCTTGCGACACCAAATCATCAATGTCATATATCCTAATGAAAGGAATATGTTTTTTTA
390 ATGCTTTTCTTGTGACACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTTGG
*
532096 TTCCTAATCTTGAAAAGCA-TGGAG
455 TTCCCAATCTTGAAAAG-AGTGGAG
* * *
532120 ATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGGCTGAACATTGGA-TTTTAGGAAAATAGGG
1 ACTGTTATGAGAATCAATGCTTGCCTTATTTAAAGGATGAACATT-GATTTTTAGGAAAATAGGG
* * * *
532184 CAAA-AAATAGATTTCCATGCAAAAGAATA-CCTTCAATATCATTTATCCTAATGAGGAGAATAT
65 CAAAGAAA-AGATTTTCATGCAAAAGAAAATCATTCAATATCATTTATCCTAATGAGGAGAATGT
* * *
532247 GTTTATAGTGCCTCATCAC-AAAGTAAATGAAGATCATTACTTA-AATCC-TAGTTTCTCACAAT
129 GTTTATAGTGCCTAATCACAAAAG-GAATGAAGATCATTAC-TAGAATCCAT-GTTTGTCACAAT
* * ** *
532309 TGAGGCACGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACAAAACCAATCCT
191 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCA
* * * *
532374 TCAATATCATGTATCCTTCTTAGAAGACTAAGTTTATGGTGCCTATTCCTGCAAAGAATGGGGAT
256 TCAATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * * * * * *
532439 TAGTATGATTATTCATGTTTGTCTTTTTTAAGAGACAAACATAGATTCTTTCAAAAACGATTGAA
321 TAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGAA
* * * * * * *
532504 A-AATTACTTTACTTGCGATACCAAAGCGTCAATGTCATATATCCTAATGAAAGGAATGTGCTTT
386 AGAAATGCTTTTCTTGTGACACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTT
** *
532568 TTCTTTCCCAATCTTGAAAAGCGTGGAG
451 TTGGTTCCCAATCTTGAAAAGAGTGGAG
* * * * * *
532596 ACTGTTATGAGAATCAATGTTTACCTTATTTAAGGGATGAAC-TTTAATTTTATGGCAAATAGGG
1 ACTGTTATGAGAATCAATGCTTGCCTTATTTAAAGGATGAACATTGATTTTTA-GGAAAATAGGG
*** * * * * * *
532660 CAAAGACGGGATTTCCATGCAAAAGAAACTCA-TCAACATCATTTTTCCTAACGAGGAAAATGTG
65 CAAAGAAAAGATTTTCATGCAAAAGAAAATCATTCAATATCATTTATCCTAATGAGGAGAATGTG
* * * * * *
532724 TTCATAGTGCCTAATCACAAAATGAATGTACATCATTACTAGAATCCATGGTTGTCACAATTGAT
130 TTTATAGTGCCTAATCACAAAAGGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAG
* * * * * *
532789 GCGCAAATTTAGACTTTACAAAAATTGGTGAGACA-AAAGCCTTTCTTTCGAAACCAAAGCGTCA
195 GCACGAACTTAGACTTTACAAAAATTGGTGGGA-AGAAAGCCTTTCTTACGAAACCAAAGCATCA
* * * ** ** *
532853 ATATCGTGTATCCTTATGAAAAGACTAAGTTTAAGGCACCTAATCCAAAAAAGAATAGGGATTAG
259 ATATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG
* * * * * * * *
532918 TATGACCATTCTTGTTTGCCTTATATAAGAGACAAACTTAT-ATTTTATCAAAAATGGTTGAAAA
324 TATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTT-TGATTCTATAAAAAACGGTTGAAAG
** * * * * *
532982 AAATGCTTTTCTTGCAATA-AAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTG-TTTCT
388 AAATGCTTTTCTTGTGACACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTT
* * *
533045 GGTTCTCAATCATGAAAAGAATGGAG
453 GGTTCCCAATCTTGAAAAGAGTGGAG
* * * * * * *
533071 ACTGTTAAGAGAATCAATGGTTGCCATATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGT
1 ACTGTTATGAGAATCAATGCTTGCCTTATTTAAAGGATGAACATTGATTTTTAGGAAAATAGGGC
* **
533136 AAAGAAAAGATTTTCATGCAAAAGAAAAT-ATTCCATATCATTTATCCTAACAAGGAGAATGTGT
66 AAAGAAAAGATTTTCATGCAAAAGAAAATCATTCAATATCATTTATCCTAATGAGGAGAATGTGT
533200 TTATAGTGCCT
131 TTATAGTGCCT
533211 GATGAAAACC
Statistics
Matches: 5491, Mismatches: 757, Indels: 193
0.85 0.12 0.03
Matches are distributed among these distances:
474 56 0.01
475 906 0.16
476 1683 0.31
477 2035 0.37
478 333 0.06
479 28 0.01
481 2 0.00
482 2 0.00
483 3 0.00
484 1 0.00
486 4 0.00
488 60 0.01
489 378 0.07
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (478 bp):
ACTGTTATGAGAATCAATGCTTGCCTTATTTAAAGGATGAACATTGATTTTTAGGAAAATAGGGC
AAAGAAAAGATTTTCATGCAAAAGAAAATCATTCAATATCATTTATCCTAATGAGGAGAATGTGT
TTATAGTGCCTAATCACAAAAGGAATGAAGATCATTACTAGAATCCATGTTTGTCACAATTGAGG
CACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAAT
ATCGTGTATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTA
TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGAAAGAAA
TGCTTTTCTTGTGACACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTTGGT
TCCCAATCTTGAAAAGAGTGGAG
Found at i:534875 original size:42 final size:41
Alignment explanation
Indices: 534820--534938 Score: 157
Period size: 42 Copynumber: 2.8 Consensus size: 41
534810 TAGCCCTCAA
* *
534820 AGAGAAAGAAGAGAGAGGATGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGA-GGATGATAGGAGGAGAGACAGG
*
534862 AGAGATAGTAGAGATAGGAGCGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAG-GATGATAGGAGGAGAGACAGG
* **
534904 AGAGATAATAGAGAGAGGAGGGATGGCAGGAGGAG
1 AGAGATAGTAGAGAGAGGA-GGATGATAGGAGGAG
534939 GAGAGAAGAA
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
41 1 0.01
42 66 0.97
43 1 0.01
ACGTcount: A:0.42, C:0.03, G:0.45, T:0.09
Consensus pattern (41 bp):
AGAGATAGTAGAGAGAGGAGGATGATAGGAGGAGAGACAGG
Found at i:540585 original size:476 final size:476
Alignment explanation
Indices: 539659--542495 Score: 3415
Period size: 476 Copynumber: 6.0 Consensus size: 476
539649 TTTTGTGTGA
* * * * *
539659 CCTAATAACAAAGGGAGTGAAGAACATTACTAGAATCCACGTTTGTCACAACTT-AGGCACGAAC
1 CCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCAAGTTTGTCACAA-TTGAGGCACGAAC
* * * *
539723 TTAGACTTCACAAAAATTGGTAGGAAGAAAGCCTTTTTTATGAAACCAAAGCATCAATATCGTGT
65 TTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGT
* * * * *
539788 ATCCTTATTAGAAGATTAAGTTTATGGTGCCTAATACTGAAAAGATTGGGGATTAGTATAACTAT
130 ATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTAT
* *
539853 TCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATAAAAAACGGTTGAAAGAAATGCTTTT
195 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGATTGAAAGAAATGC-TTT
* * * * * *
539918 CTTGTGACACCGAAGCATCAATGTCTTATATCCTAATGAAAGGAAAGTGTTTTTTGGGTCCCAAT
259 CTTGCGACACCAAATCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTTGGTTCCCAAT
* *
539983 CTTGAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAAGGATGAACATTGATT
324 CTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACATTGATT
* * * *
540048 TTTAGGAAAATAGGGCAAA-AAAAGATTTTCATGCAAAAGAAAATCTTCCATATCATTTATCCTA
389 TTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTA
*
540112 TTGAGGAGAATGTGTTTATAGTG
454 ATGAGGAGAATGTGTTTATAGTG
* * **
540135 CCTAATTACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCACAATTGAGGCACGAACT
1 CCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCAAGTTTGTCACAATTGAGGCACGAACT
* * * * * *
540200 TAGGCGTCT-CAAAAATTGGTGGGAAGAAAGCTTTTCTTACGAAACCAAAGCTTCAATAACGTGC
66 TAGAC-TTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGT
* * * * *
540264 ATCCTTATTAGAAGACTATGTTTATGGTGCCAAATCCTAAACAGAATGAGGATTAGTATGATTTA
130 ATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGA-CTA
540329 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGATTGAAAGAAATGC-TT
194 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGATTGAAAGAAATGCTTT
* * * *
540393 CATGCGACACCAAATCATCAATGTCGTATATCCTAATGTAAGGAATGTGTTTTTTGGTTCCAAAT
259 CTTGCGACACCAAATCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTTGGTTCCCAAT
* * * * *
540458 CTTGAAAAGAATGGAGAGC-ATTAGGAGAATCAATACTTGCATTATTTAAGGGATGAACTTTGAT
324 CTTGAAAAGAATGGAGA-CTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACATTGAT
* * * * *
540522 TGTAAGAAAAATAGGGCAAAGAAAAGATTTCCATACAAAAGCAAATCATCAATATCTTTTATCCT
388 TTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT
* *
540587 AATGAGTAGAATGTGTTTATTGTG
453 AATGAGGAGAATGTGTTTATAGTG
* * ** *
540611 CCTAATAACAAAGTGAATGAAGATCATTACTAGAATCCAAG-TTGTTACAATTGAGGCATAAATT
1 CCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCAAGTTTGTCACAATTGAGGCACGAACT
* ** * * *
540675 TAGACTTTACAAAAATTGTTAAGAAAAAAGCCTTTCTTTCGAAACCAAAGCATCAATATCATGTA
66 TAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTA
* * * * *
540740 TCCTTATGAGAGGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTAACTATG
131 TCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATT
* * * * *
540805 CATGTTTATCTCATTTAAGAGATAAACTTTGATTCTATCAAAAAC-AGTTGAAGGAAATGCTTTT
196 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGA-TTGAAAGAAATGC-TTT
* * * * *
540869 CTTACGACATCAAATCATCAATGTTATATATCCTAATGAAAGGAATGTGTGTTTTAGTTCCCAAT
259 CTTGCGACACCAAATCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTTGGTTCCCAAT
* * *
540934 CTTG-AAA-AATGTGCAGAGTGTTACGAGAATCAATACTTGCCTTATTTAAGGGATGAACATTGG
324 CTTGAAAAGAATG-G-AGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACATTGA
* * * * * * *
540997 TTTTTAGGAAAATAGGGCAAAGAATAGATTTCCATGTAAAAGAATACCATCAATAACACTTATCC
387 TTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCC
*
541062 TAATGAGGAGAATATGTTTATA--G
452 TAATGAGGAGAATGTGTTTATAGTG
*
541085 --TAATCACAAAGTGAATGAAGATCATTACTAGAATCCTAGTTTGTCACAATTGAGGCACGAACT
1 CCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCAAGTTTGTCACAATTGAGGCACGAACT
* * * *
541148 TAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAATGCTTCAATATCATG-A
66 TAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTA
* * *
541212 TCCTTTTTAGAAGACTAAGTTTATGGTGTCTAATCC-AACAAAGAATGGGGATTAGTATGATTAT
131 TCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAA-AAAGAATGGGGATTAGTATGACTAT
* * * * * *
541276 TCATGTTTGTCTTTTTTGAGAGGCAAACTTTGATTTTATCAAAAAA-GGTTGAAAAAAATGCTTT
195 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT-AAAAAACGATTGAAAGAAATGC-TT
* * * * * *
541340 TCTTGGGACACCAAAGTGA-CAACGTCATATGTCCTAATGAAAGGAATGTG-TTTCTAGTTCCCA
258 TCTTGCGACACCAAA-TCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTTGGTTCCCA
* * * * * *
541403 ATCTTGAGAAGAGTGGAGACTGTTACGAGAATCAATGCTTACCTTATTTAAGAGATGAACTTTAA
322 ATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACATTGA
* * *
541468 TTTTATA-GAAAATAGGGCAAAGGAAAGATTTTCAAGCAAAAGAAAATCATCAATATCATTTATC
387 TTTTA-AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC
* * * *
541532 CTCACGAGAAGAATGTGTTTACAGTG
451 CTAATGAGGAGAATGTGTTTATAGTG
*** * * * * ** *
541558 CCTAATCACAGAAAAAAATGTACATCATTACTAGAATCCATGGTTGTCACAATTGACACACAAAC
1 CCTAATCACA-AAGTGAATGAAGATCATTACTAGAATCCAAGTTTGTCACAATTGAGGCACGAAC
* * *
541623 TTAAACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTTCAAAACCAAAGCATCAATATCGTGT
65 TTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGT
** * * *
541688 ATCCTTACGAGAAGACTAAGTTTAAGGTACCTAATCCAAAAAAGAATGGGGATTAGTATGACTAT
130 ATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTAT
* * * * *
541753 TCATGTTTGCCTTATATATAAGAGACAAACATTGATTTTATCAAAAAC-AGTT-AAA-AAAGGCT
195 TCATGTTTGTCTTAT-T-TAAGAGACAAACTTTGATTCTATAAAAAACGA-TTGAAAGAAATGC-
* * * * * * * *
541815 TTTCTTCCAATACCAAAGCATCAATGTTATGTATCCTACTGAAAGGAATGTG-TTCTTGGTTCCC
256 TTTCTTGCGACACCAAATCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTTGGTTCCC
* * * *
541879 AATCATGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGCCATATTTAAAGGATGAACATTG
321 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACATTG
*
541944 ATTTTGAA-GAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTAT
386 ATTTT-AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
* *
542008 CTTAATGAGGAGAATGTGCTTATAGTG
450 CCTAATGAGGAGAATGTGTTTATAGTG
* * * * * *
542035 TCTAATCACAAAGGGAATGAAGAACATTACCAGAATCCACA-TTTGTCAAAACCT-AGGCACGAA
1 CCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCA-AGTTTGTCACAA-TTGAGGCACGAA
* * * * *
542098 CTTAGACTTTGCAAAAATTGGCGAGAAGAAAGTCTTTCTTACAAAACCAAAGCATCAATATCGTG
64 CTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTG
* * * * *
542163 TATCGTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGATTTGGGATTAGTAAGACTA
129 TATCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTA
* * * *
542228 TTCATGTTTGTCTCATTTAAGAGACAAACTTTGACTCTATTAAAAACGGTTGAAAGAAATGCTTT
194 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGATTGAAAGAAATGC-TT
* * * *
542293 TTTTGCGACACCTAATCGTCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTTGGTTTCCAA
258 TCTTGCGACACCAAATCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTTGGTTCCCAA
* * * * * * *
542358 TCTTGAAAAGCATGAAGACTGTTACAAGATTCAATCCTTGCCTTATTTAAGGGATGAACTTTGGT
323 TCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACATTGAT
* * * * * * * *
542423 TTTTAGGAAAAT-GAGCAAAGAATAGATTTCCACGCAAAAGAATACCATCAATAACACTTATCCT
388 TTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT
542487 AATGAGGAG
453 AATGAGGAG
542496 CCACCAATTT
Statistics
Matches: 1996, Mismatches: 325, Indels: 80
0.83 0.14 0.03
Matches are distributed among these distances:
471 131 0.07
472 181 0.09
473 86 0.04
474 91 0.05
475 269 0.13
476 798 0.40
477 406 0.20
478 12 0.01
479 22 0.01
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (476 bp):
CCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCAAGTTTGTCACAATTGAGGCACGAACT
TAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTA
TCCTTATTAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATT
CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGATTGAAAGAAATGCTTTCT
TGCGACACCAAATCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTTGGTTCCCAATCT
TGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACATTGATTTT
AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
GAGGAGAATGTGTTTATAGTG
Found at i:542545 original size:16 final size:16
Alignment explanation
Indices: 542524--542555 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
542514 TCTATGCTCG
542524 TGCCTCAAATGTGCCA
1 TGCCTCAAATGTGCCA
542540 TGCCTCAAATGTGCCA
1 TGCCTCAAATGTGCCA
542556 AACATGGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (16 bp):
TGCCTCAAATGTGCCA
Found at i:543402 original size:476 final size:476
Alignment explanation
Indices: 542540--549114 Score: 8732
Period size: 476 Copynumber: 13.9 Consensus size: 476
542530 AAATGTGCCA
* * *
542540 TGCCTCAAATGTGCCAAACATGGATTCTAGTAATAATCTTCATTCATGTTGTGATTAGGCAGTAT
1 TGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCACTAT
* *
542605 AAACTTATTCTCCTCCTTAGGATAAATGATATGGATGATTTTCTTTT-CAT-GAAATCTTTTCTT
66 AAACTTATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* * * *
542668 TGCCCAATTTTCCTTAAAATGAAAGTTCATTCCTCAAATAAGGCAAGCATTGATTCTCATAACAA
131 TGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAG
* *
542733 TTTCCACTCTTTTCGAGATTGGGAACCAAAAAACACATTCCTTTCAATAGGATACGCGACATTGA
196 TCTCCACTCTTTTCGAGATTGGGAACC-AAAAACACATTCCTTTCATTAGGATACGCGACATTGA
* * *
542798 CACTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTTAAAGAATCAAAGTTTGTCTCTT
260 CGCTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
* *
542863 AAATAAGACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGATTAGACACCATAAACTT
325 AAATAAGACAAACATGAATAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTT
** *
542928 AGTCTTCTCATAAACATACATGATATTGATGGTTTGGTTTCGTAAGAAA-GCTTTCTTCCCACCA
390 AGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCA
* *
542992 AATTTGGTAAAGTCTATGTTTG
455 ATTTTGGTAAAGTCTATGTTCG
* * *
543014 TGCCTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCATGTTGCGATTAGGCAATAT
1 TGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCACTAT
* *
543079 AAACTTATTCTCCTCCTTAGGATAAATGATATGGATGATTTTCTTTTTGCATGGAAATCTTTTCT
66 AAACTTATTCTCCTCATTAGGATAAATGATATTGATGATTTTC-TTTTGCATGGAAATCTTTTCT
* * * * *
543144 TTGCCCAATTTTCCTTAAAATTAGAGTTCATTCCTTAAAAAAGGTAAGCATTGATTCTCATAACA
130 TTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACA
* * * *
543209 ATCTCCACACTTTTCGAGATTGGGAACCAAAAACACATTCTTTTCATTAGGATACGCGACATTGG
195 GTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGA
* ** *
543274 CGCTTTGATGTTACAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
260 CGCTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
* * *
543339 AAATAAGGCAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGAATTAGGCACCATAAACTT
325 AAATAAGACAAACATGAATAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTT
*
543404 AGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTCCTTCCCACCA
390 AGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCA
543469 ATTTTGGTAAAGTCTATGTTCG
455 ATTTTGGTAAAGTCTATGTTCG
* * * * * * *
543491 TGCCTCAATTATGGCAAATATGGATTGC-AGTAATGATCTTCATTTACT-ATGTTATTAGGCACT
1 TGCCTCAAATGTGACAAACATGGATT-CTAGTAATGATCTTCATTCA-TGTTGTGATTAGGCACT
** *
543554 ATAAACAAAGTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTC
64 ATAAACTTATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTC
* * * * *
543619 TTTGCCCTGTTTTCCTTAAAATCAAATTTAATTCATTAAATAAGGCAAGCATTGATTGTCATAAC
129 TTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAAC
* * ** *
543684 AATCTCCACTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCAAAAGGATACGCGACTTTG
194 AGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTG
*
543749 ACGCTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCT
259 ACGCTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCT
*
543814 TAAATAAGACAAACATGAATAGTCACACTAATCCTCATTCTTTTATGGATTAGGCACCATAAACT
324 TAAATAAGACAAACATGAATAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACT
* * * * * * * *
543879 TAGTTTTCTCATAAGCATACATGATATTGAAGCTTTGGCTTCGTAAGAAAGGGTTTTTTCCCACC
389 TAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACC
543944 AATTTTGGTAAAGTCTATGTTCG
454 AATTTTGGTAAAGTCTATGTTCG
* * * * * * *
543967 CGCCTCAAATGTGACAAACAAGGATTGTAATAATGATCTTCATTCACGTTTTGATGAGGCACTAT
1 TGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCACTAT
* * * *
544032 GAACATATTCTCCTCATTAGGATAAATGATATTAATGATTTTCTTTTGCATGAAAATCTTTTCTT
66 AAACTTATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* *
544097 TACCCTATTTTCC-----AT---A----A---C----AT----C-A--A-T-ATTCTCATAATAG
131 TGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAG
* * * ***
544134 TCTCCACTCTTTTCAACATTGGGAACCAAAAACACATTCATTTCATTAGGATATATGACATTGAC
196 TCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGAC
** * * * * * * * *
544199 GCTTTGGTGTCGTAAAAAAAGCATTTCTATCTACCGTTGTTGATAGTACCAAAGTCTGTCTCTTA
261 GCTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * *
544264 AATATGACAAACATGAATCGTCACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTA
326 AATAAGACAAACATGAATAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTA
* *
544329 GTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAA-GCTTCCTTCCTACCAA
391 GTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAA
544393 TTTTGGTAAAGTCTATGTTCG
456 TTTTGGTAAAGTCTATGTTCG
* * ** *
544414 TGCCTCAACTGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACATTGTGATTAGGCAATAT
1 TGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCACTAT
* * *
544479 AAACTTATTCTCCTCCTTAGGATAAATGATATGGATGATTTTCTTTTGCATAGAAATCTTTTCTT
66 AAACTTATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* *
544544 TGCCCTATTTTCCTTAAAATCAAAGTTCATTCCCTAAATAAGGCAAGCATTGATTCTCATAACAA
131 TGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAG
* *
544609 TCTCCACTTTTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCAGTAGGATACGCGACATTGA
196 TCTCCAC-TCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGA
* * *
544674 CGGTTTAAGGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTTTCTT
260 CGCTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
*
544739 AAATAAGACAAACATGAAAAGTCACACTAATCCTCATTCTTTTTTGGATTTA-GCACCATAAACT
325 AAATAAGACAAACATGAATAGTCACACTAATCCTCATTCTTTTTTGGA-TTAGGCACCATAAACT
* * * *
544803 TAGTCTTCTCTTAAGCATACACGATATTGATGGTTTAGTTTCGTAGGAAA-GCTTTCTTCCCACC
389 TAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACC
* *
544867 AATTTTGGTAAAGTCAAAGTTCG
454 AATTTTGGTAAAGTCTATGTTCG
* * *
544890 TGCCTCAATTGTGACAAACATGGATTCTAGTAATGGTCTTCATTCATTTTGTGATTAGGCACTAT
1 TGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCACTAT
* * *
544955 TAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
66 AAACTTATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* * * * *
545020 TGCCTTATTTTCCTTAAAATCAAATTTAATTCCTTAAATAAGGCAAGCTTTGATTCTTATAACAG
131 TGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAG
* * * *
545085 TCTCCATTCTTTTCGAGATTGGGAACTAAAAACACATTTCTTTCATCAGGATACGCGACATTGAC
196 TCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGAC
* * * *
545150 GCTTTGATGTCTCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTTTCTCTTA
261 GCTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
** *
545215 AATAAGACAAACATGAATAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACTGTAAACTTT
326 AATAAGACAAACATGAATAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTA
* * *
545280 GTCTTCTCATAAGGATATATGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTTTTCCCACCAA
391 GTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAA
*
545345 TTTTGGTAAAGTCTAAGTTCG
456 TTTTGGTAAAGTCTATGTTCG
* * * *
545366 TGCCTCAATTGTGACAAACATGGATTCTCGTAATGGTCTTCATTCATTTTGTGATTAGGCACTAT
1 TGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCACTAT
* * * * * *
545431 AAACGTATTCTTCTTATTAGGATAAATAATACTGATGATTTTCTTTTGCATTGAAATCTTTTCTT
66 AAACTTATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* * * * *
545496 TGCCCTATTTTCCTTAAAATCAAATTTAATTCCTTAAATAAGGCAAGCTTTGATTCTCGTAATAG
131 TGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAG
* * * * *** *
545561 TCTCCACTCTTTTCAACATTGGGAACCAAAAATACATTCTTTTCATTAGGATATATGACATTAAC
196 TCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGAC
** * * * * * *
545626 GCTTTGGTGTCGTAAAAAAAGCATTTCTTTCAACAGTTTTTGACAAAATCAAAGTTTGTCTCTAA
261 GCTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * *
545691 AATAAGACAAAC-------GT---ACTAATCCTTATTCTTTTTAGGATTTGGCACCATAAACTTA
326 AATAAGACAAACATGAATAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTA
* * * * * *
545746 GTTTTCTCACAAGGATACATGATATTGAAT-CTTTGGTTTCATAAGAAAGGCTTTTTTCCCACCA
391 GTCTTCTCATAAGGATACACGATATTG-ATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCA
*
545810 ATTTTGGTAAAGTCTATGTTCA
455 ATTTTGGTAAAGTCTATGTTCG
* * ** *
545832 TGCCTCAAATGTGACAAACGTGGATTGTAGTAATGATCTTCATTCACATTGTGATTAGGCACTAC
1 TGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCACTAT
* * * *
545897 GAACGTATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATATTTTCTT
66 AAACTTATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* * * * * *
545962 TGCCCTATTTTCCATGATATCAATA-TTC-TTCCCTTAAATAAGGCAAGCATTGAATCTCGTGAC
131 TGCCCTATTTTCCTTAAAATCAA-AGTTCATT-CCTTAAATAAGGCAAGCATTGATTCTCATAAC
* * * * * ***
546025 AGTCTTC-C-C---TCAAGATTGGGAACCAAAAAGACATTTCTTTCATTAAGATATATGACATTG
194 AGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTG
* ** * * * * * * *
546085 ATGCTTTGGTGTCGCAAAAAAAGCATTTCTATCGACCGTTTTTAATAGTACCAAAGTTTGCCTCT
259 ACGCTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCT
* *
546150 TAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCCTTTTTGGATTAGGCACCATAAACT
324 TAAATAAGACAAACATGAATAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACT
* * * * * *
546215 TAGTCTTCTCATAATGATACATGATATTGATGCTTTGATTTTGTAAGAAATGCTTTCTTCCCACC
389 TAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACC
* * *
546280 AATTTTGGTAATGTCTAAGTTTG
454 AATTTTGGTAAAGTCTATGTTCG
* * * * **
546303 TGCCTCAATTGTGACAAACATAGA-TCATAGTAATGGTCTTCATTCATTTTGTGATTACACACTA
1 TGCCTCAAATGTGACAAACATGGATTC-TAGTAATGATCTTCATTCATGTTGTGATTAGGCACTA
* ** * *
546367 TAACCACATTCTTCTCATCAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCT
65 TAAACTTATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCT
* * *
546432 TTGCCTTATTTTCCTTAAAATCAAAATTAATTCCTTAAATAAGGCAAGCATTGATTCTCATAACA
130 TTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACA
* * ** *
546497 GTCTCCACTCTTTTC-ACGATTGGGATCTAAAAACACATTTATTTCATCAGGATACGCGACATTG
195 GTCTCCACTCTTTTCGA-GATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTG
* * *
546561 ACGCTTTAATGTCTCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTTTCTCT
259 ACGCTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCT
* *
546626 TAAATAAGACAAACATGAATAGTTACACTAATCCTCATTCTTTTTTGGATTAGGCACTATAAACT
324 TAAATAAGACAAACATGAATAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACT
* * * *
546691 TTGTCCTCTCATAAGGATATACGATATTGATGGTTTGGTTTCGTAA-AAATGCTTTCTTCCCACC
389 TAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACC
*
546755 AATTTTGGTAAAGTCTACGTTCG
454 AATTTTGGTAAAGTCTATGTTCG
* *
546778 TGCCTCAAATGTGACAAACATGGATCCTAGTAATGATCATCATTCACT-TTGTGATTAGGCACTA
1 TGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCA-TGTTGTGATTAGGCACTA
* * * *
546842 TAAACTTATTCT-CTTATTAGGATAAATGATATGGATGATATTCTTTTGCATGGAAAGCTTTTCT
65 TAAACTTATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCT
* * * * * *
546906 TTGCCCTATTTTTCATAAAATCAAGGTTCATTCCTTAAATAAGGTAAGCATTGATTCTCGTAACC
130 TTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACA
* *
546971 GTCTCCACACTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCAACATTGA
195 GTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGA
* * * * * *
547036 TGCTTCAATGTCGCATGAAAGGCATTTCTTCCAACCGTTTTTGATAGAATCAAAGCTTGTCTCTT
260 CGCTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
* * * *
547101 AAATAAGACAAACATGAGTTGTCACACAAATCCTCATTCTTTTTTGGGTTAGGCACCATAAACTT
325 AAATAAGACAAACATGAATAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTT
* * * * * * *
547166 AGTTTTCTCATAAGCATACATGATGTTGATGGTTTGTTTTCGTAAGAAA-GCTTTGTTCTCACCA
390 AGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCA
*
547230 ATTTTGTTAAAGTCTATGTTCG
455 ATTTTGGTAAAGTCTATGTTCG
* * * * * * *
547252 TGCCTCAAA--TGCCAAACATGGATTCCAGTAATGATCTTCATTCACGTAGAGATTAGGCAGTCT
1 TGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCACTAT
* *
547315 AAACTTATTCTCCTCCTTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTT
66 AAACTTATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* *
547380 TGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTAATTCTCATAACAA
131 TGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAG
* * * *
547445 TCTCCACT-TTTTCCGAGATTGGGAACCCAAAACACATTCCTTTCAATAGGATACGCTACACTGA
196 TCTCCACTCTTTT-CGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGA
* * * *
547509 CTG-TCTAATGTCGCAATAAAAGCATTTCTTTTAACCATTTTTGATAGAATCAAAGTTTGTCTCT
260 C-GCTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCT
*
547573 TAAATAAGACAAACATGAATAGTGACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACT
324 TAAATAAGACAAACATGAATAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACT
* * *
547638 TAGTCTTCTCATAATGATACACGATATTGATGGTTTGGTTTCGTAAGAAA-GCTTCCTTCCCTCC
389 TAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACC
547702 AATTTTGGTAAAGTCTATGTTCG
454 AATTTTGGTAAAGTCTATGTTCG
* * * * * * * * *
547725 TGCCTTAAATGTGCCAAACGTGGATTCTAGTAGTGATCTTCATTCACGGTGTGATTAAGCAGTAA
1 TGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCACTAT
* *
547790 AAACTTATTCTCCTCCTTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTT
66 AAACTTATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* *
547855 TGCCCTATTTTCCTTAAAATCCAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAA
131 TGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAG
547920 TCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGA-
196 TCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGAC
* * * *
547984 TCTTTAATGTCGCAAGAAAGGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTATTA
261 GCTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * *
548049 AATAAGACAAACATGAATAGTCACACTAGTCCTCAATT-TTTTTGGGATTAGGCACGATAAACTT
326 AATAAGACAAACATGAATAGTCACACTAATCCTC-ATTCTTTTTTGGATTAGGCACCATAAACTT
* * *
548113 AGTCTTCTCATAAGGATACATGATATTGATGGTTTGGTTTCGTAAGAAA-CCTTCCTTCCCA-CA
390 AGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCA
* *
548176 ATTTTGGTAAAGTATATGTTCC
455 ATTTTGGTAAAGTCTATGTTCG
* * * *
548198 TGCCTCAATTGTAACAAACATGGATTCTAGTAATGGTCTTCATTCATTTTGTGATTAGGCACTAT
1 TGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCACTAT
* * * * *
548263 AAA-TGTATTCTTCTCATTAAGATATATAATATTGATGATTTT-TTTT-CATGGAAATATTTTCT
66 AAACT-TATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCT
* * *
548325 TTGCCCTATTTTCCTTAAAATAAAATTTAATTCCTTAAATAAGGCAAGCATTGATTCTCATAACA
130 TTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACA
* * * * * *
548390 GTCACCACTCTTTTCAAGATTGGTAACGAAAAAAACATTCCTTTCATTATGATACGCGACATTGA
195 GTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGA
* * * * ** * *
548455 TGCTTTGATGTCGCAAGAAAAGTACTTT-TTCCAACAATTTTTGAAAAAATCAAAGTTTGTCTCT
260 CGCTTTAATGTCGCAAGAAAAGCA-TTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCT
* * *
548519 TAAATAAGATAAACATGAGTAGCCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACT
324 TAAATAAGACAAACATGAATAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACT
* * * *
548584 TAGTCTTATCATAAGGATACCCGATATTGATGGTTTGGTTTCGTAAAAAAGGCTTTTTTCCCACC
389 TAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACC
* **
548649 AATTTAGGTAAAGTCTAACTTCG
454 AATTTTGGTAAAGTCTATGTTCG
* * * * *
548672 TGCCTCAATTGTGACAAACATGGATTCTAGTAATGGTCTTCACTCATTTTGTGATTAGGCGCTAT
1 TGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCACTAT
* * * * * *
548737 AAACGTATTCTTCTCATTAAGATAAATGATATTGATGAATTTCTTTAGCATAGAAATCTTTTC-T
66 AAACTTATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* * * *
548801 TGCCCTATTTTCCTTAAAATCAAATTTAATTCCCTAAATATGGCAAGCATTGATTCTCATAACAG
131 TGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAG
* * * ** *
548866 TCTCCATTCTTTTTGAGATTAGGAATGAAAAGA-ACATTCCTTTCATTAGGATACGCAACATTGA
196 TCTCCACTCTTTTCGAGATTGGGAACCAAAA-ACACATTCCTTTCATTAGGATACGCGACATTGA
* *
548930 TGCTTTAATGTCGCAAGAAAAGCATTTCTTTCAACTGTTTTTGATAGAATCAAAG-TT-TCTCTT
260 CGCTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
* * * *
548993 AAATAAGACAAACATGACTAGTCACACTAATCCTCCTTCTTTTTTAGAATAGGCACCATAAACTT
325 AAATAAGACAAACATGAATAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTT
*
549058 AGTCTTCTCATAAGGATACACGATATTGACGGTTTGGTTTCGTAAGAAAGGCTTTCT
390 AGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCT
549115 GATGAAAACC
Statistics
Matches: 5373, Mismatches: 641, Indels: 175
0.87 0.10 0.03
Matches are distributed among these distances:
447 158 0.03
448 224 0.04
449 1 0.00
450 1 0.00
452 3 0.00
453 1 0.00
455 1 0.00
457 2 0.00
459 1 0.00
461 112 0.02
462 1 0.00
464 2 0.00
465 3 0.00
466 283 0.05
467 3 0.00
468 3 0.00
469 2 0.00
470 5 0.00
471 414 0.08
472 218 0.04
473 595 0.11
474 759 0.14
475 731 0.14
476 1623 0.30
477 225 0.04
478 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (476 bp):
TGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCACTAT
AAACTTATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
TGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAG
TCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGAC
GCTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
AATAAGACAAACATGAATAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTA
GTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAA
TTTTGGTAAAGTCTATGTTCG
Found at i:547414 original size:947 final size:946
Alignment explanation
Indices: 544121--549114 Score: 6616
Period size: 947 Copynumber: 5.3 Consensus size: 946
544111 TAACATCAAT
* * * *
544121 ATTCTCATAATAGTCTCCACTCTTTTCAACATTGGGAACCAAAAACACATTCATTTCATTAGGAT
1 ATTCTCATAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGAT
*** * ** * * * * * *
544186 ATATGACATTGACGCTTTGGTGTCGTAAAAAAAGCATTTCTATCTACCGTTGTTGATAGTACCAA
66 ACGCGACATTGATGCTTTAATGTCGCAAGAAAAGCATTTCT-TCAACCGTTTTTGATAGAATCAA
* * * *
544251 AGTCTGTCTCTTAAATATGACAAACATGAATCGTCACACAAATCCTCATTCTTTTTTGGATTAGG
130 AGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCTCATTCTTTTTTGGATTAGG
*
544316 CACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAGAAA-GCT
195 CACCATAAACTTAGTCTTCTCATAAGGATACATGATATTGATGGTTTGGTTTCGTAAGAAAGGCT
* * *
544380 TCCTTCCTACCAATTTTGGTAAAGTCTATGTTCGTGCCTCAACTGTGCCAAACATGGATTCTAGT
260 TTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCTCAA-TGTGACAAACATGGATTCTAGT
* ** * * *
544445 AATGATCTTCATTCACATTGTGATTAGGCAATATAAACTTATTCTCCTCCTTAGGATAAATGATA
324 AATGGTCTTCATTCATTTTGTGATTAGGCACTATAAACTTATTCTTCTCATTAGGATAAATGATA
* *
544510 TGGATGATTTTCTTTTGCATAGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATT
389 TGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATT
* * *
544575 CCCTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTTTTTTTCGA-GATTGGGAACCAA
454 CCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCAC-TCTTTTC-ACGATTGGGAACCAA
* *
544639 AAACACATTCCTTTCAGTAGGATACGCGACATTGACGGTTTAAGGTCGCAAGAAAAGCATTTCTT
517 AAACACATTCCTTTCA-TAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTCTT
* *
544704 TCAACCGTTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAAAAGTCACACTAA
581 TCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAA
* *
544769 TCCTCATTCTTTTTTGGATTTA-GCACCATAAACTTAGTCTTCTCTTAAGCATACACGATATTGA
646 TCCTCATTCTTTTTTGGA-TTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGA
* * * *
544833 TGGTTTAGTTTCGTAGGAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCAAAGTTCGTGCCTCAA
710 TGGTTTGGTTTCGTA-AAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTCGTGCCTCAA
* * * *
544898 TTGTGACAAACATGGATTCTAGTAATGGTCTTCATTCATTTTGTGATTAGGCACTATTAACGTAT
774 ATGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACGTAT
*
544963 TCTTCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTAT
839 TC-TCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTAT
* * *
545028 TTTCCTTAAAATCAAATTTAATTCCTTAAATAAGGCAAGCTTTG
903 TTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTG
* * * * *
545072 ATTCTTATAACAGTCTCCATTCTTTTCGAGATTGGGAACTAAAAACACATTTCTTTCATCAGGAT
1 ATTCTCATAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGAT
* * *
545137 ACGCGACATTGACGCTTTGATGTCTCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAA
66 ACGCGACATTGATGCTTTAATGTCGCAAGAAAAGCATTTCTT-CAACCGTTTTTGATAGAATCAA
*
545202 AGTTTTTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCTCATTCTTTTTTGGATTAGG
130 AGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCTCATTCTTTTTTGGATTAGG
** * *
545267 CACTGTAAACTTTGTCTTCTCATAAGGATATATGATATTGATGGTTTGGTTTCGTAAGAAAGGCT
195 CACCATAAACTTAGTCTTCTCATAAGGATACATGATATTGATGGTTTGGTTTCGTAAGAAAGGCT
* * *
545332 TTTTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTCGT
260 TTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCTCAA-TGTGACAAACATGGATTCTAGT
* * *
545397 AATGGTCTTCATTCATTTTGTGATTAGGCACTATAAACGTATTCTTCTTATTAGGATAAATAATA
324 AATGGTCTTCATTCATTTTGTGATTAGGCACTATAAACTTATTCTTCTCATTAGGATAAATGATA
* *
545462 CT-GATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTAAT
389 -TGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAAT
* * *
545526 TCCTTAAATAAGGCAAGCTTTGATTCTCGTAATAGTCTCCACTCTTTTCAAC-ATTGGGAACCAA
453 TCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTCTTTTC-ACGATTGGGAACCAA
* * *** * ** * *
545590 AAATACATTCTTTTCATTAGGATATATGACATTAACGCTTTGGTGTCGTAAAAAAAGCATTTCTT
517 AAACACATTCCTTTCA-TAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTCTT
* * * *
545655 TCAACAGTTTTTGACAAAATCAAAGTTTGTCTCTAAAATAAGACAAAC-------GT---ACTAA
581 TCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAA
* * * * * *
545710 TCCTTATTCTTTTTAGGATTTGGCACCATAAACTTAGTTTTCTCACAAGGATACATGATATTGAA
646 TCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTG-A
* * * * *
545775 T-CTTTGGTTTCATAAGAAAGGCTTTTTTCCCACCAATTTTGGTAAAGTCTATGTTCATGCCTCA
710 TGGTTTGGTTTCGTAA-AAA-GCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTCGTGCCTCA
* * * **
545839 AATGTGACAAACGTGGATTGTAGTAATGATCTTCATTCACATTGTGATTAGGCACTACGAACGTA
773 AATGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACGTA
* *
545904 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATATTTTCTTTGCCCTA
838 TTCT-CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
* * *
545969 TTTTCCATGATATCAATA-TTC-TTCCCTTAAATAAGGCAAGCATTG
902 TTTTCCTTAAAATCAA-AGTTCATT-CCTTAAATAAGGCAAGCATTG
* * * * * * * *
546014 AATCTCGTGACAGTCTTC-C-C---TCAAGATTGGGAACCAAAAAGACATTTCTTTCATTAAGAT
1 ATTCTCATAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGAT
*** ** * * * * *
546074 ATATGACATTGATGCTTTGGTGTCGCAAAAAAAGCATTTCTATCGACCGTTTTTAATAGTACCAA
66 ACGCGACATTGATGCTTTAATGTCGCAAGAAAAGCATTTCT-TCAACCGTTTTTGATAGAATCAA
* * *
546139 AGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCCTTTTTGGATTAGG
130 AGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCTCATTCTTTTTTGGATTAGG
* * * * *
546204 CACCATAAACTTAGTCTTCTCATAATGATACATGATATTGATGCTTTGATTTTGTAAGAAATGCT
195 CACCATAAACTTAGTCTTCTCATAAGGATACATGATATTGATGGTTTGGTTTCGTAAGAAAGGCT
* * * *
546269 TTCTTCCCACCAATTTTGGTAATGTCTAAGTTTGTGCCTCAATTGTGACAAACATAGA-TCATAG
260 TTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCTCAA-TGTGACAAACATGGATTC-TAG
** * ** *
546333 TAATGGTCTTCATTCATTTTGTGATTACACACTATAACCACATTCTTCTCATCAGGATAAATGAT
323 TAATGGTCTTCATTCATTTTGTGATTAGGCACTATAAACTTATTCTTCTCATTAGGATAAATGAT
* * *
546398 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAATTAAT
388 ATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAAT
* *
546463 TCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTCTTTTCACGATTGGGATCTAAA
453 TCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTCTTTTCACGATTGGGAACCAAA
** * *
546528 AACACATTTATTTCATCAGGATACGCGACATTGACGCTTTAATGTCTCAAGAAAAGCATTTCTTC
518 AACACATTCCTTTCAT-AGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTCTTT
* *
546593 CAACCGTTTTTGATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACATGAATAGTTACACTAAT
582 CAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAAT
* * * *
546658 CCTCATTCTTTTTTGGATTAGGCACTATAAACTTTGTCCTCTCATAAGGATATACGATATTGATG
647 CCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATG
546723 GTTTGGTTTCGTAAAAATGCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTCGTGCCTCAAAT
712 GTTTGGTTTCGTAAAAA-GCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTCGTGCCTCAAAT
* * *
546788 GTGACAAACATGGATCCTAGTAATGATCATCATTCACTTTGTGATTAGGCACTATAAACTTATTC
776 GTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACGTATTC
* * * *
546853 TCTTATTAGGATAAATGATATGGATGATATTCTTTTGCATGGAAAGCTTTTCTTTGCCCTATTTT
841 TCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT
* * * *
546918 TCATAAAATCAAGGTTCATTCCTTAAATAAGGTAAGCATTG
906 CCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTG
* * *
546959 ATTCTCGTAACCGTCTCCACACTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGAT
1 ATTCTCATAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGAT
* * * *
547024 ACGCAACATTGATGCTTCAATGTCGCATGAAAGGCATTTCTTCCAACCGTTTTTGATAGAATCAA
66 ACGCGACATTGATGCTTTAATGTCGCAAGAAAAGCATTTCTT-CAACCGTTTTTGATAGAATCAA
* * * * *
547089 AGCTTGTCTCTTAAATAAGACAAACATGAGTTGTCACACAAATCCTCATTCTTTTTTGGGTTAGG
130 AGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCTCATTCTTTTTTGGATTAGG
* * * *
547154 CACCATAAACTTAGTTTTCTCATAAGCATACATGATGTTGATGGTTTGTTTTCGTAAGAAA-GCT
195 CACCATAAACTTAGTCTTCTCATAAGGATACATGATATTGATGGTTTGGTTTCGTAAGAAAGGCT
* * * * * *
547218 TTGTTCTCACCAATTTTGTTAAAGTCTATGTTCGTGCCTCAA-ATGCCAAACATGGATTCCAGTA
260 TTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCTCAATGTGACAAACATGGATTCTAGTA
* ** * * * * * *
547282 ATGATCTTCATTCACGTAGAGATTAGGCAGTCTAAACTTATTCTCCTCCTTAGGATAAATGATAT
325 ATGGTCTTCATTCATTTTGTGATTAGGCACTATAAACTTATTCTTCTCATTAGGATAAATGATAT
*
547347 GGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTC
390 GGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATTC
* * *
547412 CTTAAATAAGGCAAGCATTAATTCTCATAACAATCTCCACT-TTTTC-CGAGATTGGGAACCCAA
455 CTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTCTTTTCAC--GATTGGGAACCAAA
* * * *
547475 AACACATTCCTTTCAATAGGATACGCTACACTGACTG-TCTAATGTCGCAATAAAAGCATTTCTT
518 AACACATTCCTTTC-ATAGGATACGCGACATTGAC-GCTTTAATGTCGCAAGAAAAGCATTTCTT
* * *
547539 TTAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTGACACTAA
581 TCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAA
*
547604 TCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAATGATACACGATATTGAT
646 TCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGAT
* * * *
547669 GGTTTGGTTTCGTAAGAAAGCTTCCTTCCCTCCAATTTTGGTAAAGTCTATGTTCGTGCCTTAAA
711 GGTTTGGTTTCGTAA-AAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTCGTGCCTCAAA
* * * ** * * * *
547734 TGTGCCAAACGTGGATTCTAGTAGTGATCTTCATTCACGGTGTGATTAAGCAGTAAAAACTTATT
775 TGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACGTATT
* *
547799 CTCCTCCTTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
840 CT-CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
*
547864 TTCCTTAAAATCCAAGTTCATTCCTTAAATAAGGCAAGCATTG
904 TTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTG
*
547907 ATTCTCATAACAATCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGAT
1 ATTCTCATAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGAT
* *
547972 ACGCGACATTGAT-CTTTAATGTCGCAAGAAAGGCATTTCTTTCAACCATTTTTGATAGAATCAA
66 ACGCGACATTGATGCTTTAATGTCGCAAGAAAAGCATTTC-TTCAACCGTTTTTGATAGAATCAA
* * *
548036 AGTTTGTCTATTAAATAAGACAAACATGAATAGTCACACTAGTCCTCAATT-TTTTTGGGATTAG
130 AGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCTC-ATTCTTTTTTGGATTAG
* *
548100 GCACGATAAACTTAGTCTTCTCATAAGGATACATGATATTGATGGTTTGGTTTCGTAAGAAA-CC
194 GCACCATAAACTTAGTCTTCTCATAAGGATACATGATATTGATGGTTTGGTTTCGTAAGAAAGGC
* * * *
548164 TTCCTTCCCA-CAATTTTGGTAAAGTATATGTTCCTGCCTCAATTGTAACAAACATGGATTCTAG
259 TTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCTCAA-TGTGACAAACATGGATTCTAG
* * *
548228 TAATGGTCTTCATTCATTTTGTGATTAGGCACTATAAA-TGTATTCTTCTCATTAAGATATATAA
323 TAATGGTCTTCATTCATTTTGTGATTAGGCACTATAAACT-TATTCTTCTCATTAGGATAAATGA
* * * *
548292 TATTGATGATTTT-TTTT-CATGGAAATATTTTCTTTGCCCTATTTTCCTTAAAATAAAATTTAA
387 TATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAA
* * * *
548355 TTCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCACCACTCTTTTCAAGATTGGTAACGAA
452 TTCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTCTTTTCACGATTGGGAACCAA
* * * * *
548420 AAAAACATTCCTTTCATTATGATACGCGACATTGATGCTTTGATGTCGCAAGAAAAGTACTTT-T
517 AAACACATTCCTTTCA-TAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCA-TTTCT
* ** * * * * *
548484 TCCAACAATTTTTGAAAAAATCAAAGTTTGTCTCTTAAATAAGATAAACATGAGTAGCCACACTA
580 TTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTA
* *
548549 ATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTATCATAAGGATACCCGATATTGA
645 ATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGA
* *
548614 TGGTTTGGTTTCGTAAAAAAGGCTTTTTTCCCACCAATTTAGGTAAAGTCTAAC-TTCGTGCCTC
710 TGGTTTGGTTTCGT-AAAAA-GCTTTCTTCCCACCAATTTTGGTAAAGTCT-ACGTTCGTGCCTC
* * * * *
548678 AATTGTGACAAACATGGATTCTAGTAATGGTCTTCACTCATTTTGTGATTAGGCGCTATAAACGT
772 AAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACGT
* * * *
548743 ATTCTTCTCATTAAGATAAATGATATTGATGAATTTCTTTAGCATAGAAATCTTTTC-TTGCCCT
837 ATTC-TCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT
* * * *
548807 ATTTTCCTTAAAATCAAATTTAATTCCCTAAATATGGCAAGCATTG
901 ATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTG
* * * **
548853 ATTCTCATAACAGTCTCCATTCTTTTTGAGATTAGGAATGAAAAGA-ACATTCCTTTCATTAGGA
1 ATTCTCATAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAA-ACACATTCCTTTCATTAGGA
* *
548917 TACGCAACATTGATGCTTTAATGTCGCAAGAAAAGCATTTCTTTCAACTGTTTTTGATAGAATCA
65 TACGCGACATTGATGCTTTAATGTCGCAAGAAAAGCATTTC-TTCAACCGTTTTTGATAGAATCA
* * * *
548982 AAG-TT-TCTCTTAAATAAGACAAACATGACTAGTCACACTAATCCTCCTTCTTTTTTAGAATAG
129 AAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCTCATTCTTTTTTGGATTAG
* *
549045 GCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGACGGTTTGGTTTCGTAAGAAAGGC
194 GCACCATAAACTTAGTCTTCTCATAAGGATACATGATATTGATGGTTTGGTTTCGTAAGAAAGGC
549110 TTTCT
259 TTTCT
549115 GATGAAAACC
Statistics
Matches: 3527, Mismatches: 456, Indels: 125
0.86 0.11 0.03
Matches are distributed among these distances:
936 6 0.00
937 526 0.15
938 1 0.00
940 3 0.00
941 73 0.02
942 207 0.06
943 1 0.00
944 6 0.00
945 214 0.06
946 543 0.15
947 896 0.25
948 262 0.07
949 40 0.01
950 197 0.06
951 338 0.10
952 213 0.06
953 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.37
Consensus pattern (946 bp):
ATTCTCATAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGAT
ACGCGACATTGATGCTTTAATGTCGCAAGAAAAGCATTTCTTCAACCGTTTTTGATAGAATCAAA
GTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCTCATTCTTTTTTGGATTAGGC
ACCATAAACTTAGTCTTCTCATAAGGATACATGATATTGATGGTTTGGTTTCGTAAGAAAGGCTT
TCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCTCAATGTGACAAACATGGATTCTAGTAA
TGGTCTTCATTCATTTTGTGATTAGGCACTATAAACTTATTCTTCTCATTAGGATAAATGATATG
GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATTCC
TTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTCTTTTCACGATTGGGAACCAAAAAC
ACATTCCTTTCATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTCTTTCAAC
CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCTC
ATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTT
GGTTTCGTAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTCGTGCCTCAAATGTGAC
AAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACGTATTCTCTCA
TTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTA
AAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTG
Found at i:550432 original size:158 final size:157
Alignment explanation
Indices: 549808--550432 Score: 374
Period size: 159 Copynumber: 3.9 Consensus size: 157
549798 GTTGTCATCA
* * * **
549808 CTTTCATCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTA
1 CTTTCTTCCCACCAATTTTGGTAAAGTCAAAGTTCGTGCCTCAAATAAGACAAACATGGATTCTA
549873 GTAATGGTCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAATGA
66 GTAATGGTCTTCATTCATTTTGTGATTAGGCACTATAAA-ATATTCTTCTCATTAGGATAAATGA
* * * **
549938 TATTGATGATTTTCTTTTGCACGGAAATT
130 TATTGATGATTTGCTTTTGTA-AGAAAAG
* ** ** ** * * ** * * * ** *
549967 ATTTCTTTGC-CGTATTTTCCTTAAAATCAAATTTAATCCCTTAAATAAGGCAAGTATTGATTCT
1 CTTTCTTCCCACCAATTTT-GGTAAAGTCAAAGTTCGTGCCTCAAATAAGACAAACATGGATTCT
* * * * * * * * * * **
550031 CGTAATAGTCTCCACTCTTTTTGAGATTGGGAACGA-AAAACACCTTCCTT-TCATTAGGATACG
65 AGTAATGGTCTTCATTCATTTTGTGATTAGGCACTATAAAATA--TT-CTTCTCATTAGGATAAA
* * * ***
550094 TGACT-TTGAAGCTTTGATGCCGTAAGAAAAG
127 TGA-TATTGATGATTTGCTTTTGTAAGAAAAG
* * * * *
550125 CATTTCTTTCAACCATTTTTGATAGAA-TCAAAGTATATC-T-CCT-AAATAAGACAAACAAGAG
1 C-TTTCTTCCCACCAATTTTGGTA-AAGTCAAAG--T-TCGTGCCTCAAATAAGACAAACATG-G
* * * ** * * * *
550186 TAGTCACACTAATCCTCCTTC-TT--TTTTG-GATTAGGCACCATAAACTTAGTCTTCTCATAAG
60 -ATTC-TAGTAATGGT-CTTCATTCATTTTGTGATTAGGCACTATAAA-ATATTCTTCTCATTAG
* * ** * *
550247 GATACACGATATTGATGGCTTGGTTTTGTAAGAAAGG
121 GATAAATGATATTGATGATTTGCTTTTGTAAGAAAAG
* * **
550284 CTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTA
1 CTTTCTTCCCACCAATTTTGGTAAAGTCAAAGTTCGTGCCTCAAATAAGACAAACATGGATTCTA
550349 GTAATGGTCTTCATTCATTTTGTGATTAGGCACTATAAAAGTATTCTTCTCATTAGGATAAATGA
66 GTAATGGTCTTCATTCATTTTGTGATTAGGCACTATAAAA-TATTCTTCTCATTAGGATAAATGA
*
550414 TATTGATGATTTTCTTTTG
130 TATTGATGATTTGCTTTTG
550433 CATGGAAATC
Statistics
Matches: 329, Mismatches: 109, Indels: 57
0.66 0.22 0.12
Matches are distributed among these distances:
154 4 0.01
155 10 0.03
156 5 0.02
157 13 0.04
158 102 0.31
159 156 0.47
160 23 0.07
161 6 0.02
162 7 0.02
163 3 0.01
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.37
Consensus pattern (157 bp):
CTTTCTTCCCACCAATTTTGGTAAAGTCAAAGTTCGTGCCTCAAATAAGACAAACATGGATTCTA
GTAATGGTCTTCATTCATTTTGTGATTAGGCACTATAAAATATTCTTCTCATTAGGATAAATGAT
ATTGATGATTTGCTTTTGTAAGAAAAG
Found at i:551031 original size:475 final size:475
Alignment explanation
Indices: 549814--551298 Score: 2203
Period size: 476 Copynumber: 3.1 Consensus size: 475
549804 ATCACTTTCA
549814 TCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATG
1 TCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATG
549879 GTCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAATGATATTGA
66 GTCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAATGATATTGA
* * *
549944 TGATTTTCTTTTGCACGGAAAT-TATTTCTTTGCCGTATTTTCCTTAAAAT-CAAATTTAATCCC
131 TGATTTTCTTTTGCATGGAAATCT-TTTCTTTGCCCTATTTTCCTTAAAATCCAAA-TTAATTCC
* * *
550007 TTAAATAAGGCAAGTATTGATTCTCGTAATAGTCTCCACTCTTTTTGAGATTGGGAACGAAAAAC
194 TTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTTGAGATTGGGAACCAAAAAC
* * * * * *
550072 ACCTTCCTTTCATTAGGATACGTGACTTTGAAGCTTTGATGCCGTAAGAAAAGCATTTCTTTCAA
259 ACATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTTCAA
* * *
550137 CCATTTTTGATAGAATCAAAGTATATCTCCTAAATAAGACAAACAAGAGTAGTCACACTAATCCT
324 CCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAGTAGTCACACTAATCCT
* * *
550202 CCTTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGCT
389 CATTCTTTTTCGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTT
* *
550267 TGGTTTTGTAAGAAAGGCTTTCT
454 TGGTTTCGTAAGAAA-GCTTCCT
550290 TCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATG
1 TCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATG
550355 GTCTTCATTCATTTTGTGATTAGGCACTATAAA-AGTATTCTTCTCATTAGGATAAATGATATTG
66 GTCTTCATTCATTTTGTGATTAGGCACTATAAACA-TATTCTTCTCATTAGGATAAATGATATTG
550419 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT-CAAATGTAATTCC
130 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCCAAAT-TAATTCC
* * *
550483 TTAAATAAGGAAAGCATTGATTCTCGTAACAGTATCCACTCTTTTTGAGATTGGGGACCAAAAAC
194 TTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTTGAGATTGGGAACCAAAAAC
*
550548 ACATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTCCAA
259 ACATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTTCAA
* * *
550613 CCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAACCCT
324 CCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAGTAGTCACACTAATCCT
* * * * *
550678 CATTCTTTTTCGGATTAGGCACCATAAACTTAGTCTTCTTATACGGATACACGAAATTAATGTTT
389 CATTCTTTTTCGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTT
* *
550743 TGGTTTCGTGAGAATGCTTCCT
454 TGGTTTCGTAAGAAAGCTTCCT
* * * * * *
550765 TTCCACCAATTTTGGTAAAGTCTATGTTCGTGTCTGAAATGTGCCAAACATGGATTCTAGTAATG
1 TCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATG
* * * ** * * * * * *
550830 ATTTTTATTCACATTGTGATTAGGCAGTATAAACTTATTCTCCTCCTTAGGATATATGATATGGA
66 GTCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAATGATATTGA
* * *
550895 T-ATTTTTCTTTT-CAATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCCAAGTTCATTCC
131 TGA-TTTTCTTTTGC-ATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCCAAATTAATTCC
* * * *
550958 TTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTGGGAACCAGAAAC
194 TTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTTGAGATTGGGAACCAAAAAC
* * *
551023 ATATTCCTTTCATTAGGATACGCGACATTGACGCGTTAATGTCGCAAGAAAAGCATTTCTTTCAA
259 ACATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTTCAA
* * *
551088 CCATTTTTGATAGAATCAAAGTTTGTCTATTAAATAAGACAAACAAGAATAGTCACACTAGTCCT
324 CCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAGTAGTCACACTAATCCT
* * *
551153 CAATT-TTTTTGGGATTAGGCACGATAAACTTAGTCTTCTCATAAGGATACATGATATTGATGGT
389 C-ATTCTTTTTCGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGT
*
551217 TTGGTTTCGTAAGAAACCTTCCT
453 TTGGTTTCGTAAGAAAGCTTCCT
* * *
551240 TCCCA-CAATTTTGGTAAAGTCTATGTTCCTGCCTCAATTGTAACAAACATGGATTCTAG
1 TCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAG
551299 GCATTTGAAG
Statistics
Matches: 912, Mismatches: 89, Indels: 18
0.89 0.09 0.02
Matches are distributed among these distances:
474 50 0.05
475 425 0.47
476 436 0.48
477 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.36
Consensus pattern (475 bp):
TCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATG
GTCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGGATAAATGATATTGA
TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCCAAATTAATTCCTT
AAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTTGAGATTGGGAACCAAAAACAC
ATTCCTTTCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTCTTTCAACC
ATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAGTAGTCACACTAATCCTCA
TTCTTTTTCGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGGTTTG
GTTTCGTAAGAAAGCTTCCT
Found at i:552090 original size:42 final size:42
Alignment explanation
Indices: 552038--552153 Score: 178
Period size: 42 Copynumber: 2.8 Consensus size: 42
552028 TTCTCTCCTT
* * *
552038 CTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCTCTC
1 CTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCTCTC
552080 CTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCTCTC
1 CTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCTCTC
* * *
552122 CTGCTATCATCCCTCCTATCTCTTCTTTCTCT
1 CTCCTATCATCCCTCCTATCTCTACTATCTCT
552154 TTGAGGGTTA
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.09, C:0.44, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCTCTC
Found at i:552119 original size:18 final size:18
Alignment explanation
Indices: 552050--552120 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
552040 CCTGTCATCC
* *
552050 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
552068 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
552090 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
552110 CTCCTGTCTCT
1 CTCCTGTCTCT
552121 CCTGCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:554656 original size:476 final size:475
Alignment explanation
Indices: 553763--555858 Score: 2923
Period size: 475 Copynumber: 4.4 Consensus size: 475
553753 GTTTTCATCA
* * * * *
553763 ATTAGGATATGCGACATTGATGCTTTGATG-CTGCAAGAAATGCATTTCTTCCAACCATTTTTGA
1 ATTAGGATACGCGACATTGATGCTTTAATGTC-GCAAGAAAAGCATTTCTTTCAACCGTTTTTGA
* *
553827 TAGAATCAAAGTTTGTCTCTTAAAAAAGACAAGCATGAATAGTCACACTAATCCTCATTCTTTTT
65 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCTCATTCTTTTT
* * * *
553892 TGGATTAGGCACTACAAA-TTTAGTCTTCTCAAAAGCATATACGATATTGATGGTTTGGTTTCGT
130 TGGATTAGGCACCATAAACTTT-GTCTTCTCAAAAGCATACACGATATTGATGCTTTGGTTTCGT
* * * * * *
553956 AAGAAAGCTTTCTTCCCACCAATTTTAGAAAAGTCTATGTTTGTGCCTGAAATGTGCCAAACATG
194 AAGAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTCGTGCCTCAAATGTGACAAACATG
* *
554021 GATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCTTAGGA
259 GATTCTAGTAATGATCATCATTCACGTTGTGATTAGGCAGTATAAACTTATTCTCCTCATTAGGA
554086 TAAATGATATGGATGATTTTCTTTTGCATGGAAAA-CTTTTCTTTACCCTATTTTCCTTAAAATC
324 TAAATGATATGGATGATTTTCTTTTGCAT-GAAAATCTTTTCTTTACCCTATTTTCCTTAAAATC
* * * * *
554150 AAAGTTCATTCCTTAACTAAGGCAAGCATTGATTCTCCTAACAGTCTCCACTCTTTTCAAGATAG
388 AAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTG
*
554215 GGAACCAAAAACACATTCCTTTC
453 GAAACCAAAAACACATTCCTTTC
* *
554238 AATAGGATACGCGACATTGATGCTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTAAT
1 ATTAGGATACGCGACATTGATGCTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGAT
* * ** * *
554303 AAAATCAAAGTTTGTCTCTTAAATGAGACAAACATTGAGCAGCCACACTAATCCTCATTCATTTT
66 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-TGAATAGTCACACTAATCCTCATTCTTTTT
* * * *
554368 TGGATTAGGCACCGTAAACTTTGTCTTCTCATAAGGATACACGATATTGAT-CGTTTGGTTTTGT
130 TGGATTAGGCACCATAAACTTTGTCTTCTCAAAAGCATACACGATATTGATGC-TTTGGTTTCGT
* *
554432 AAGAAATGCTTTCTTCCCACCAATTTCGGTAAAGTCTACGTTCGTGCCTCAAATGTGACAAACGT
194 AAGAAA-GCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTCGTGCCTCAAATGTGACAAACAT
* * * * * *
554497 GTATTCTAGTAATGATCATCGTTCACTTTGTGATTAGGCACTATAAACGTATTCT-CTTATTAGG
258 GGATTCTAGTAATGATCATCATTCACGTTGTGATTAGGCAGTATAAACTTATTCTCCTCATTAGG
** * * * *
554561 ATAAATGATATGGATGATTTTCTTTTGCACAAAAATCTTTTCCTTGCCCCATTTGCCTTAAAATC
323 ATAAATGATATGGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATC
* * * * *
554626 AAAGTTGATTCCTTAAATAAGCCTAGCATTGATTCTCATAACAGTCTCCACTCTTTTTGAGATTG
388 AAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTG
*
554691 GGAACCAAAAACACATTCCTTTC
453 GAAACCAAAAACACATTCCTTTC
* ** * * *
554714 CTTAGGATACATGACATTGATGCTTTAATGTCGCAAGAAAAGGCTTTTCTTCCAACCATTTTTGA
1 ATTAGGATACGCGACATTGATGCTTTAATGTCGCAAGAAAA-GCATTTCTTTCAACCGTTTTTGA
* * * * * *
554779 TAGAATTAAAGTCTATCACTGAAATAAGACAAACATGAATAGTCACACAAATCCTCATTCTTTTT
65 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCTCATTCTTTTT
** * * * *
554844 TGGATTAGATACCATAAACTTAGTTTTCTCAAAAGCATGCATGATATTGATGCTTTGGTTTCGTA
130 TGGATTAGGCACCATAAACTTTGTCTTCTCAAAAGCATACACGATATTGATGCTTTGGTTTCGTA
* * * *
554909 AGAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCTGAAATGTGCCAAACATTG
195 AGAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTCGTGCCTCAAATGTGACAAACATGG
* * * * * *
554974 ATTATAGTATTGATCTTCATTCACGTTGTGATAAGGCAGTATAAACTTATTCTCCTCCTTAAGAT
260 ATTCTAGTAATGATCATCATTCACGTTGTGATTAGGCAGTATAAACTTATTCTCCTCATTAGGAT
*
555039 AAATGATATGGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
325 AAATGATATGGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAA
* *
555104 AGTTCATTCCCTAAATAA-GCAAGCATTGATTCTCACAACAATCTCCACTCTTTTCGAGATTGGA
390 AGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTGGA
*
555168 AACAAAAAACACATTCCTTTC
455 AACCAAAAACACATTCCTTTC
* *** *
555189 ATTAGGATATGCGACATTGATGCTTTAATGTCATTAGAAAAGCATTTCTTTCAACTGTTTTTGAT
1 ATTAGGATACGCGACATTGATGCTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGAT
* * *
555254 AGTACCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTTT
66 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCTCATTCTTTTTT
* * * * * *
555319 TGATTAGGCACCATAAACATAGTCTTCTCATAATG-ATACATGATATTGATGCTTTGGTTTTGTA
131 GGATTAGGCACCATAAACTTTGTCTTCTCA-AAAGCATACACGATATTGATGCTTTGGTTTCGTA
* *
555383 AGAAATGCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTCGTGCCACAAATGTGACGAACATG
195 AGAAA-GCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTCGTGCCTCAAATGTGACAAACATG
* * * * *
555448 GGTTCTAGTAATGATCATCATTCACTTTGTGATTAGGCAGTATAAACTTATTC-ACTTATTGGGA
259 GATTCTAGTAATGATCATCATTCACGTTGTGATTAGGCAGTATAAACTTATTCTCCTCATTAGGA
*
555512 TAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCA
324 TAAATGATATGGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCA
* * *
555577 AAGTACATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCAACTCTTTTCGAGATTCG
389 AAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTGG
*
555642 AAAGCAAAAACACATTCCTTTC
454 AAACCAAAAACACATTCCTTTC
* * *
555664 TTTAGGAGACAG-GACATTGACGCTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGA
1 ATTAGGATAC-GCGACATTGATGCTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGA
* * * *
555728 TGGAATCAAAGTCTGTCTCTTAAATAAGACAAACATTAATAGTCACACAAATCCTCATTCTTTTT
65 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCTCATTCTTTTT
* *
555793 TGGATTAGGCACCATAAACTTTGTCTGCTCAAAAGCATACACGATATTGATGATTTGGTTTCGTA
130 TGGATTAGGCACCATAAACTTTGTCTTCTCAAAAGCATACACGATATTGATGCTTTGGTTTCGTA
555858 A
195 A
555859 CCAATTTCAA
Statistics
Matches: 1415, Mismatches: 192, Indels: 28
0.87 0.12 0.02
Matches are distributed among these distances:
474 222 0.16
475 613 0.43
476 430 0.30
477 150 0.11
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (475 bp):
ATTAGGATACGCGACATTGATGCTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGAT
AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCTCATTCTTTTTT
GGATTAGGCACCATAAACTTTGTCTTCTCAAAAGCATACACGATATTGATGCTTTGGTTTCGTAA
GAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTCGTGCCTCAAATGTGACAAACATGGA
TTCTAGTAATGATCATCATTCACGTTGTGATTAGGCAGTATAAACTTATTCTCCTCATTAGGATA
AATGATATGGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAA
GTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTGGAA
ACCAAAAACACATTCCTTTC
Found at i:555894 original size:20 final size:20
Alignment explanation
Indices: 555869--555908 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
555859 CCAATTTCAA
555869 AGTACATTCCTTAAATAAGG
1 AGTACATTCCTTAAATAAGG
555889 AGTACATTCCTTAAATAAGG
1 AGTACATTCCTTAAATAAGG
555909 CAAGCATTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (20 bp):
AGTACATTCCTTAAATAAGG
Found at i:556127 original size:311 final size:311
Alignment explanation
Indices: 555578--556178 Score: 1202
Period size: 311 Copynumber: 1.9 Consensus size: 311
555568 TTAAAATCAA
555578 AGTACATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCAACTCTTTTCGAGATTCGA
1 AGTACATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCAACTCTTTTCGAGATTCGA
555643 AAGCAAAAACACATTCCTTTCTTTAGGAGACAGGACATTGACGCTTTAATGTCGCAAGAAAAGCA
66 AAGCAAAAACACATTCCTTTCTTTAGGAGACAGGACATTGACGCTTTAATGTCGCAAGAAAAGCA
555708 TTTCTTTCAACCGTTTTTGATGGAATCAAAGTCTGTCTCTTAAATAAGACAAACATTAATAGTCA
131 TTTCTTTCAACCGTTTTTGATGGAATCAAAGTCTGTCTCTTAAATAAGACAAACATTAATAGTCA
555773 CACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTTGTCTGCTCAAAAGCATACACGAT
196 CACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTTGTCTGCTCAAAAGCATACACGAT
555838 ATTGATGATTTGGTTTCGTAACCAATTTCAAAGTACATTCCTTAAATAAGG
261 ATTGATGATTTGGTTTCGTAACCAATTTCAAAGTACATTCCTTAAATAAGG
555889 AGTACATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCAACTCTTTTCGAGATTCGA
1 AGTACATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCAACTCTTTTCGAGATTCGA
555954 AAGCAAAAACACATTCCTTTCTTTAGGAGACAGGACATTGACGCTTTAATGTCGCAAGAAAAGCA
66 AAGCAAAAACACATTCCTTTCTTTAGGAGACAGGACATTGACGCTTTAATGTCGCAAGAAAAGCA
556019 TTTCTTTCAACCGTTTTTGATGGAATCAAAGTCTGTCTCTTAAATAAGACAAACATTAATAGTCA
131 TTTCTTTCAACCGTTTTTGATGGAATCAAAGTCTGTCTCTTAAATAAGACAAACATTAATAGTCA
556084 CACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTTGTCTGCTCAAAAGCATACACGAT
196 CACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTTGTCTGCTCAAAAGCATACACGAT
556149 ATTGATGATTTGGTTTCGTAACCAATTTCA
261 ATTGATGATTTGGTTTCGTAACCAATTTCA
556179 GTAAAGTCTA
Statistics
Matches: 290, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
311 290 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32
Consensus pattern (311 bp):
AGTACATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCAACTCTTTTCGAGATTCGA
AAGCAAAAACACATTCCTTTCTTTAGGAGACAGGACATTGACGCTTTAATGTCGCAAGAAAAGCA
TTTCTTTCAACCGTTTTTGATGGAATCAAAGTCTGTCTCTTAAATAAGACAAACATTAATAGTCA
CACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTTGTCTGCTCAAAAGCATACACGAT
ATTGATGATTTGGTTTCGTAACCAATTTCAAAGTACATTCCTTAAATAAGG
Found at i:556733 original size:458 final size:459
Alignment explanation
Indices: 555893--565725 Score: 12408
Period size: 475 Copynumber: 21.1 Consensus size: 459
555883 ATAAGGAGTA
* * *
555893 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCAACTCTTTTCGAGATTCGAAAGC
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGGAACC
** *
555958 AAAAACACATTCCTTTCTTTAGGAGACAG-GACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
66 AAAAACACATTCCTTTCAATAGGATAC-GCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
*
556022 CTTTCAACCGTTTTTGATGGAATCAAAGTCTGTCTCTTAAATAAGACAAACATTAATAGTCACAC
130 CTTTCAACCGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCACAC
* *
556087 AAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTTGTCTGCTCAAAAGCATACACGATATT
195 AAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAAAAGCATACACGATATT
* *
556152 GATGATTTGGTTTCGTAACCAATTTCAGTAAAGTCTATGTTTGTGCCTCCAATGTGCCAAACATG
260 GATGATTTGGTTTCGTAACCAATTTCAGTAAAGTCTATGTTCGTGCCTCAAATGTGCCAAACATG
*
556217 GATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAACTTCTTCTCCTCCATAGGA
325 GATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCATAGGA
556282 TAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
390 TAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
*
556347 AGGTT
455 AAGTT
* *
556352 CATTCCTCAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCAGAACC
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGGAACC
* * * *
556417 AAAAACACATTCCTTTCAATAGGATGCACGACATTAACGCTTTAATGTTGCAAGAAAAGCATTTC
66 AAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTC
* * * *
556482 TTTCAACTGTTTTTGATGGAATCAAAGTCTATCTCTTAAAAAAGACAAACATTAATAGTCACACA
131 TTTCAACCGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCACACA
*
556547 AAT-CTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTGCTCAAAAGCATACACGATATTG
196 AATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAAAAGCATACACGATATTG
* *
556611 ATGATTTGGTTTCGTAACCAATTTCAGTAAGGTCTATGTTTGTGCCTCAAATGTGCCAAACATGG
261 ATGATTTGGTTTCGTAACCAATTTCAGTAAAGTCTATGTTCGTGCCTCAAATGTGCCAAACATGG
556676 ATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCATAGGAT
326 ATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCATAGGAT
*
556741 AAATGATATGGATGATTTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAA
391 AAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
*
556806 GGTT
456 AGTT
* **
556810 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTCTTTTCGAGATTCAAAACC
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGGAACC
* *
556875 AAAAACACATTCCTTTCAATAGGATACACGACATTGACGCTTTAATGTCACAAGAAAAGCATTT-
66 AAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTC
* * * *
556939 TTTCAACCGTTTTTGATGGAATCAAAGTCTATCTCTTAAAAAAGACAAACATTAATAGTCACCCA
131 TTTCAACCGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCACACA
* *
557004 AATCCTCATTCTTTTTTGGATCAGGCACCATAAACTTAGTCTGCTCAAAAGCATACACGATATTG
196 AATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAAAAGCATACACGATATTG
* * * *
557069 ATGATTTGGTTTCATAACCAATTTCAGTAAAGTCTATGTTTGTGCCTTAAATGTGCCAAACATTG
261 ATGATTTGGTTTCGTAACCAATTTCAGTAAAGTCTATGTTCGTGCCTCAAATGTGCCAAACATGG
* * * *
557134 ATTCTAGTATTGATCTTCATTCACGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCTTAAGAT
326 ATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCATAGGAT
*
557199 AAATGATATGGATGATTTTCTTTTGCATGAAAATCTTTTCTTTG--CTATTTTCCTTAAAATCAA
391 AAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
557262 AGTT
456 AGTT
* * * * *
557266 CATTCCCTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCAAGTTTGGGAACA
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGGAACC
* * * ** *
557331 AAAAACACATTCCTTTCATTAGGATATGCGACATTGATGCTTTAATGTCATAGGAAAAGCATTTC
66 AAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTC
** * * * * * *
557396 TTTCAAATGTTTTTGATAGTACCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACT
131 TTTCAACCGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCACACA
* *
557461 AATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAATG-ATACATGATATT
196 AATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCA-AAAGCATACACGATATT
* * ** * *
557525 GATGCTTTGGTTTTGTAAGAAATGCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTCGTGCCA
260 GATGATTTGGTTTCGT-----A------------ACCAATTTCAGTAAAGTCTATGTTCGTGCCT
* * * * **
557590 CAAATGTGACGAACATGGGTTCTAGTAATGATCATCATTCACATTGTGATTAGGCAGTATAAACT
308 CAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAACT
* * * *
557655 TATTC-ACT-TATTGGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACC
373 TATTCTCCTCCA-TAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
*
557718 CTATTTTCCTTAAAATCAAAGTA
437 CTATTTTCCTTAAAATCAAAGTT
* * *
557741 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCAACTCTTTTCGAGATTCGAAAGC
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGGAACC
** *
557806 AAAAACACATTCCTTTCTTTAGGAGACAG-GACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
66 AAAAACACATTCCTTTCAATAGGATAC-GCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
*
557870 CTTTCAACCGTTTTTGATGGAATCAAAGTCTGTCTCTTAAATAAGACAAACATTAATAGTCACAC
130 CTTTCAACCGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCACAC
* *
557935 AAATCCTCATTCTTTTTTGGATTAGGCACCAGAAACTTAGTCTGCTCAAAAGCATACACGATATT
195 AAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAAAAGCATACACGATATT
* *
558000 GGTGATTTGGTTTCGTAACCAATTTCAGTAAAGTCTATGTTTGTGCCTCAAATGTGCCAAACATG
260 GATGATTTGGTTTCGTAACCAATTTCAGTAAAGTCTATGTTCGTGCCTCAAATGTGCCAAACATG
*
558065 GATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAATATAAACTTATTCTCCTCCATAGGA
325 GATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCATAGGA
558130 TAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
390 TAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
558195 AAGTT
455 AAGTT
* * *
558200 CATTCCCTAAATAAGGCAAGCATTGATTCTCACAACAATCTCCACTCTTTTCGTGATT-GGAAAC
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGG-AAC
* * * * ***
558264 AAAAAACACATTCCTTTCATTAGGATATGCGACATTGATGCTTTAATGTCATTAGAAAAGCATTT
65 CAAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
* * * * * *
558329 CTTTCAACTGTTTTTGATAGTACCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATAC
130 CTTTCAACCGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCACAC
* * * * *
558394 TAATCCTCATTCTTTTTTTGATTAGGCACCATAAACATAGTCTTCTCATAATG-ATACATGATAT
195 AAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCA-AAAGCATACACGATAT
* * ** *
558458 TGATGCTTTGGAGTTGTAAGAAATGCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTCGTGCC
259 TGA-----T-GA-TT-T--G----G-TTTCGT--AACCAATTTCAGTAAAGTCTATGTTCGTGCC
* * * * * ** *
558523 ACAAATGTGACGAACATGGGTTCTAGTAATGATCATCATTCACATTGTGATTAAGCAGTATAAAC
307 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAAC
* * * *
558588 TTATTC-ACT-TATTGGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTAC
372 TTATTCTCCTCCA-TAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
*
558651 CCTATTTTCCTTAAAATCAAAGTA
436 CCTATTTTCCTTAAAATCAAAGTT
* * *
558675 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCAACTCTTTTCGAGATTCGAAAGC
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGGAACC
** *
558740 AAAAACACATTCCTTTCTTTAGGAGACAG-GACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
66 AAAAACACATTCCTTTCAATAGGATAC-GCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
*
558804 CTTTCAACCGTTTTTTGATGGAATCAAAGTCTGTCTCTTAAATAAGACAAACATTAATAGTCACA
130 CTTTCAACCG-TTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCACA
*
558869 CAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTGCTCAAAAGCATACACGATAT
194 CAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAAAAGCATACACGATAT
*
558934 TGATGATTTGGTTTCGTAACCAATTTCAGTAAAGTCTATGTTTGTGCCTCAAATGTGCCAAACAT
259 TGATGATTTGGTTTCGTAACCAATTTCAGTAAAGTCTATGTTCGTGCCTCAAATGTGCCAAACAT
*
558999 GGATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAACTTATTCTCCCCCATAGG
324 GGATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCATAGG
559064 ATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
389 ATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
*
559129 AAGGTT
454 AAAGTT
* **
559135 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTCTTTTCGAGATTCAAAACC
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGGAACC
* *
559200 AAAAACACATTCCTTTCAATAGGATACACGACATTGACGCTTTAATGTCACAAGAAAAGCATTT-
66 AAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTC
* * * *
559264 TTTCAACCGTTTTTGATGGAATCAAAGTCTATCTCTTAAAAAAGACAAACATTAATAGTCACCCA
131 TTTCAACCGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCACACA
* *
559329 AATCCTCATTCTTTTTTGGATCAGGCACCATAAACTTAGTCTGCTCAAAAGCATACACGATATTG
196 AATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAAAAGCATACACGATATTG
* * * * *
559394 ATGATTTGGTTTCATAACCGATTTCAGTAAAGTCTATGTTTGTGCCTTAAATGTGCCAAACATTG
261 ATGATTTGGTTTCGTAACCAATTTCAGTAAAGTCTATGTTCGTGCCTCAAATGTGCCAAACATGG
* * * *
559459 ATTCTAGTATTGATCTTCATTCACGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCTTAAGAT
326 ATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCATAGGAT
*
559524 AAATGATATGGATGATTTTCTTTTGCATGAAAATCTTTTCTTTG--CTATTTTCCTTAAAATCAA
391 AAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
559587 AGTT
456 AGTT
* * * * *
559591 CATTCCCTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCAAGTTTGGGAACA
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGGAACC
* * * **
559656 AAAAACACATTCCTTTCATTAGGATATGCGACATTGATGCTTTAATGTCATAAGAAAAGCATTTC
66 AAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTC
** * * * * * *
559721 TTTCAAATGTTTTTGATAGTACCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACT
131 TTTCAACCGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCACACA
* *
559786 AATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAATG-ATACATGATATT
196 AATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCA-AAAGCATACACGATATT
* * ** * *
559850 GATGCTTTGGTTTTGTAAGAAATGCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTCGTGCCA
260 GATGATTTGGTTTCGT-----A------------ACCAATTTCAGTAAAGTCTATGTTCGTGCCT
* * * *
559915 CAAATGTGACGAACATGGGTTCTAGTAATGATCATCATTCACT-TTGTGATTAGGCAGTATAAAC
308 CAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCA-TGTTGTGATTAGGCAGTATAAAC
* * *
559979 TTATTC-ACT-TATTGGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
372 TTATTCTCCTCCA-TAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
*
560042 CCTATTTTCCTTAAAATCAAAGTA
436 CCTATTTTCCTTAAAATCAAAGTT
* * *
560066 CATTCCTTAAATAAGGCAAGCATTGTTTCTCATAACAATCTCAACTCTTTTCGAGATTC-GAATG
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGGAA-C
** * *
560130 CAAAAACACATTCCTTTCTTTAGGATACACGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
65 CAAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
* *
560195 CTTTCAACCGTTTTCGATGGAATCAAAGTCTGTCTCTTAAATAAGACAAACATTAATAGTCACAC
130 CTTTCAACCGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCACAC
*
560260 AAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTGCTCAAAAGCATACACGATATT
195 AAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAAAAGCATACACGATATT
* *
560325 GGTGATTTGGTTTCGTAACCAATTTTCAGTAAAGTCTATGTTTGTGCCTCAAATGTGCCAAACAT
260 GATGATTTGGTTTCGTAACCAA-TTTCAGTAAAGTCTATGTTCGTGCCTCAAATGTGCCAAACAT
560390 GGATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCATAGG
324 GGATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCATAGG
560455 ATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
389 ATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
*
560520 AAGGTT
454 AAAGTT
* **
560526 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTCTTTTCGAGATTCAAAACC
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGGAACC
* *
560591 AAAAACACATTCCTTTCAATAGGATACACGACATTGACGCTTTAATGTCACAAGAAAAGCATTT-
66 AAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTC
* * * *
560655 TTTCAACCGTTTTTGATGGAATCAAAGTCTATCTCTTAAAAAAGACAAACATTAATAGTCACCCA
131 TTTCAACCGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCACACA
* *
560720 AATCCTCATTCTTTTTTGGATCAGGCACCATAAACTTAGTCTGCTCAAAAGCATACACGATATTG
196 AATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAAAAGCATACACGATATTG
* * * * *
560785 ATGATTTGGTTTCATAACCGATTTCAGTAAAGTCTATGTTTGTGCCTTAAATGTGCCAAACATTG
261 ATGATTTGGTTTCGTAACCAATTTCAGTAAAGTCTATGTTCGTGCCTCAAATGTGCCAAACATGG
* * * * *
560850 ATTCTAGTATTGATCTTCATTCACGTTGTGATAAGGCAGTATAAACTTATTCTCCTCCTTAAGAT
326 ATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCATAGGAT
*
560915 AAATGATATGGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
391 AAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
560980 AGTT
456 AGTT
* *
560984 CATTCCCTAAATAAGGCAAGCATTGATTCTCACAACAATCTCCACTCTTTTCGAGATT-GGAAAC
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGG-AAC
* * * * ***
561048 AAAAAACACATTCCTTTCATTAGGATATGCGACATTGATGCTTTAATGTCATTAGAAAAGCATTT
65 CAAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
* * * * * *
561113 CTTTCAACTGTTTTTGATAGTACCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATAC
130 CTTTCAACCGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCACAC
* * * *
561178 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACATAGTCTTCTCATAATG-ATACATGATAT
195 AAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCA-AAAGCATACACGATAT
* * ** *
561242 TGATGCTTTGGTTTTGTAAGAAATGCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTCGTGCC
259 TGATGATTTGGTTTCGT-----A------------ACCAATTTCAGTAAAGTCTATGTTCGTGCC
* * * * *
561307 ACAAATGTGACGAACATGGGTTCTAGTAATGATCATCATTCACT-TTGTGATTAGGCAGTATAAA
307 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCA-TGTTGTGATTAGGCAGTATAAA
* * *
561371 CTTATTC-ACT-TATTGGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
371 CTTATTCTCCTCCA-TAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
*
561434 CCCTATTTTCCTTAAAATCAAAGTA
435 CCCTATTTTCCTTAAAATCAAAGTT
* * *
561459 CATTCCTTAAATAAGGCAAGCATTGTTTCTCATAACAATCTCAACTCTTTTCGAGATTC-GAATG
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGGAA-C
** * *
561523 CAAAAACACATTCCTTTCTTTAGGATACACGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
65 CAAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
* *
561588 CTTTCAACCGTTTTCGATGGAATCAAAGTCTGTCTCTTAAATAAGACAAACATTAATAGTCACAC
130 CTTTCAACCGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCACAC
*
561653 AAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTGCTCAAAAGCATACACGATATT
195 AAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAAAAGCATACACGATATT
* * *
561718 GGTGATTTGGTTTCGTAACCAATTTCAGTAAAGTCTATGTTTGTGCCTCAAATGTGCCAAACGTG
260 GATGATTTGGTTTCGTAACCAATTTCAGTAAAGTCTATGTTCGTGCCTCAAATGTGCCAAACATG
* * *
561783 GATTCTAGTAATGACCTTCATTCATGTTGTGATTAGGCAGTATAAACTTATTCTCTTCCTTAGGA
325 GATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCATAGGA
*
561848 TAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTGCTTTGCCCTATTTTCCTTAAAATCA
390 TAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
*
561913 AAGCT
455 AAGTT
* * *
561918 CATTCCCTGAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTGGGAACC
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGGAACC
* * * *
561983 AAAAACCCATTCCTTTCAATAGGATACGTGACA-TGACGCTTTAATATCGTAAGAAAAGCATTTC
66 AAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTC
* ** *
562047 ATTCAACCGTTTTTGATAAAATCAAAGTTTGTCTCCTAAATAAGACAAACATTAATAGTCACACA
131 TTTCAACCGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCACACA
* * *
562112 AATCCTTATTCTTTTTTTGATTAGGCACCATAAACTTAGTCTTCTCAAAAGCATACATGATATTG
196 AATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAAAAGCATACACGATATTG
* **
562177 ATGGTTTGGTTTCGTAAGAAAGCTTTCTCCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCTCA
261 ATGATTTGGTTTCGT-----A-----------ACCAATTTCAGTAAAGTCTATGTTCGTGCCTCA
* *
562242 AATGTGCAAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAACTTA
310 AATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAACTTA
* *
562307 TTCTCCTCCTTAGGATAAATGATATGGATGATTTTCTTTTCCATGGAAATCTTTTCTTTGCCCTA
375 TTCTCCTCCATAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
562372 TTTTCCTTAAAATCAAAGTT
440 TTTTCCTTAAAATCAAAGTT
* * *
562392 CACTCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTCTTTTCGAGATTGGGAACC
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGGAACC
*
562457 AAAAAAACATTCCTTTCAATAGGATACGCGACATTGATC-CTTTAATGTCGCAAGAAAAGCATTT
66 AAAAACACATTCCTTTCAATAGGATACGCGACATTGA-CGCTTTAATGTCGCAAGAAAAGCATTT
* *
562521 CTTTCAACCGTTTTTGATGGAATCAAAGTCTGTCTCTTAAAAAAGACAAACATTAATAGTCACAC
130 CTTTCAACCGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCACAC
* *
562586 AAAT-CTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTACTCAAAAGCATACACGACATT
195 AAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAAAAGCATACACGATATT
* *
562650 GATGATTTGGTTTCGTAACCAATTTCAATAAAGTCTATGTTTGTGCCTCAAATGTGCCAAACATG
260 GATGATTTGGTTTCGTAACCAATTTCAGTAAAGTCTATGTTCGTGCCTCAAATGTGCCAAACATG
* *
562715 GATTCTAGTAATGATCTTCGTTCATGTTGTGATTAGGTAGTATAAACTTATTCTCCTCCATAGGA
325 GATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCATAGGA
562780 TAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
390 TAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
562845 AAGTT
455 AAGTT
* * * *
562850 CACTCTTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCTCTCTTTTCGAGATTGGGAACC
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGGAACC
* ** * * * * *
562915 AAAAAAACATTCCTTTCAATAGGATACATGACATTGACACTTTAATGACGCATGAAAGGCTTTTC
66 AAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTC
* * * * * *
562980 TTCCCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATTG-CTACAC
131 TTTCAACCGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTC-ACAC
*
563044 AAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAAG-ATACATGATAT
195 AAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCA-AAAGCATACACGATAT
** * *
563108 TGAATG-TTTGGCTTT-GTAAGAAAGGCTTTATTCCCTCCAATTTTGGAAAAGTCTAAGTTCGTG
259 TG-ATGATTTGG-TTTCGT-----A------A------CCAATTTCAGTAAAGTCTATGTTCGTG
* * * * * * * * *
563171 CCTCAATTGTGGCAAACATAGATTGTAGTAACGATCATCATTTACT-TTGTGATAAGGCACTATA
305 CCTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCA-TGTTGTGATTAGGCAGTATA
** * *
563235 AACAAAGTCTCCT-TATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTT
369 AACTTATTCTCCTCCA-TAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTT
*
563299 TGTCCC-ATTTTCCTTAAAATCAAATTT
433 TG-CCCTATTTTCCTTAAAATCAAAGTT
* * *
563326 TATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTATTTTCGAGATTGGGAACC
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGGAACC
** * * * * *
563391 AAAAATGCATTCCATTCAATAGGATATGCGACATTGACTCTTTAATGTCACAAGAAAAACATTTC
66 AAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTC
* * * * * * * *
563456 TCTCAACTGTTTTTGATAGTACCAAAGTTTGTCTCTTAAGTAAGA-AAACA-TAATAGTCATACC
131 TTTCAACCGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCACACA
* * *
563519 AATCCTCATTAC-TTTTTGGATAAGGCACCATAAACTTGGTCTTC-CATAATG-ATACACGATAT
196 AATCCTCATT-CTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCA-AAAGCATACACGATAT
* * * ** * **
563581 TGATGCTTGGGTTTTGTAAGAAATGCTTTCTTCCCACTAATTTTGGTAAAGTCTACGTTCGAACC
259 TGATGATTTGGTTTCGT----AA-----------C-C-AATTTCAGTAAAGTCTATGTTCGTGCC
* * * *
563646 TCAAATGTGACAAACATGGATTCTAGTATTGATCATCAATCACT-TTGTGATTAGGCAGTATAAA
307 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCA-TGTTGTGATTAGGCAGTATAAA
* * *
563710 CTTATTCTCATCCTTACGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
371 CTTATTCTCCTCCATAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
*
563775 CCTATTTTCTTTAAAATCAAAGTT
436 CCTATTTTCCTTAAAATCAAAGTT
* * * *
563799 CATTCCTTAAATGAGGCAAGCATTGATTCTCATAACAATCTCCACTGTTTTGGAGATTGGGAACC
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGGAACC
*
563864 AAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTCATGTCGCAAGAAAAGCATTTC
66 AAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTC
* * * * * * * * *
563929 TTTCAACTGTTTTTGATAGTACCAAAGTTTATCTCTTAAATAAGACAAACATGAATATTCATACT
131 TTTCAACCGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCACACA
* * * *
563994 AATCCTCAATATTTTTTTGATTAGGCACTC-TAAACTTAGTCTTCTCATAATG-ATACACGATAT
196 AATCCTCATTCTTTTTTGGATTAGGCAC-CATAAACTTAGTCTTCTCA-AAAGCATACACGATAT
* ** *
564057 TGATCG-TTTGGTTTTGTAAGAAATGCTTTTTTCCTGCCAATTTTGGTAAAGTCTATGTTCATGC
259 TGAT-GATTTGGTTTCGT----AA-------------CCAATTTCAGTAAAGTCTATGTTCGTGC
* * *
564121 CTCAAATGTGACAAACATGGATTCTAGTAATAAT-TATCATTCACT-TTGTGATTAGGCACTATA
306 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCT-TCATTCA-TGTTGTGATTAGGCAGTATA
* * * *
564184 AACTTATTCT-CT-TATTAGGATAAATGATATGGATGATTTTCTTTTGCACGAAAATATTTTCTT
369 AACTTATTCTCCTCCA-TAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTT
*
564247 TGCCCTATTTTCCTCAAAATCAAAGTT
433 TGCCCTATTTTCCTTAAAATCAAAGTT
* * * * * *
564274 CATTCCCTAAATAAGGCTAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCAAGATTGGGAACC
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGGAACC
*** * * *
564339 AAAAACACATTCCTTTTGTTAGGATACGCGACATTGACGCTTTAATGTCGCATGAAAGGCTTTTC
66 AAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTC
* *
564404 TTCCAACCGTTTTTGATAGG-ATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
131 TTTCAACCGTTTTTGAT-GGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCACAC
* * * * *
564468 AAATGCTCATTCTCTTTTGGATTAGGCACCATAAACTTAGTCTTCTCACAAGGATACAAGATATT
195 AAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAAAAGCATACACGATATT
* * * * * *
564533 GATGGTTTGGTTTTGTAAGAAAGGCCTTATTCTCACCAATTTTGGAAAGTCTAAGTTCGTGCCTG
260 GATGATTTGGTTTCGT----AA--CC-AATT-T---C-A----GTAAAGTCTATGTTCGTGCCTC
* * * * * * * * * *
564598 AATTGTGGCAAACATGGATTGTAGTAACGATCTTCATTTACT-TTATGATAAGGCACTATGAACA
309 AAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCA-TGTTGTGATTAGGCAGTATAAACT
* * * * *
564662 AAGTCTCCT-TATTAGGATAAATGATGTGGATGATTTTCTTTTGCATGTAAATCTTTTCTTTGCC
373 TATTCTCCTCCA-TAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
*
564726 CTATTTTCCTAAAAATCAAAGTT
437 CTATTTTCCTTAAAATCAAAGTT
* *
564749 CATTCCTTAAATAAGGCAAGCATTGATTCTTATAACAATCTCCACTCTTTTCGAGATTTGGAACC
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGGAACC
* *
564814 AAAAACACATTCCTTTCAATAGGATACGTGACATTGACGCTTTAATGTCGCAAGAAAAACATTTC
66 AAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTC
* * * * * *
564879 TTTCAACCGTTTTTGATAGTACCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACT
131 TTTCAACCGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCACACA
* * *
564944 AATCCTCATTATTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAATG-ATACATGATATT
196 AATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCA-AAAGCATACACGATATT
* * ** *
565008 GATGCTTTGGTTTTGTAAGAAATGCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTCGTGCCT
260 GATGATTTGGTTTCGT-----A------------ACCAATTTCAGTAAAGTCTATGTTCGTGCCT
* * * *
565073 CAAATGTGACAGACATGGATTCTAGTAATGATCATCATTCACT-TTGTGATTAGGCACTATAAAC
308 CAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCA-TGTTGTGATTAGGCAGTATAAAC
*** * * *
565137 TTATTCT-CTTGTTAGGATAAATGATAAT-GATGATTTTCTTTCGCATAGAAATCTTTTCTTCGC
372 TTATTCTCCTCCATAGGATAAATGAT-ATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* *
565200 CCTATTTTTCTTAAAATTAAAGTT
436 CCTATTTTCCTTAAAATCAAAGTT
* * *
565224 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAAGAATCTCCGCTCTTTTCGAGATTGGGAACC
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGGAACC
* * * *
565289 AAAAGCACATTCCTTTCAATAGGATACGCGACATTGATGCTTTAATGTCGTAAGAAAAGGCTTTT
66 AAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAA-GCATTT
* * **
565354 CTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATCCATAGTCACAC
130 CTTTCAACCGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCACAC
* * * * *
565419 AAATCCTCATTCTTTTTTGGATTTGGCACCATAAACTTAGTCCTCTCATAAGGATACATGATATT
195 AAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAAAAGCATACACGATATT
* * ** ** *
565484 GATCATTTGGTTTTGTAAGAAATGCTTTCCCCCCGCCAATTGTAAAGTCTACATCCGTGCCTCAA
260 GATGATTTGGTTTCGTAACCAA---TTT--------C-A--GTAAAGTCTATGTTCGTGCCTCAA
* * * * * *
565549 ATGTGACAAACATGGATTCTAGTAATAATCATCATTCATTTTGTGATTAGGCACTATAAAATTAT
311 ATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAACTTAT
* * * * * *
565614 TCT-CT-TATTAGGATAAGTGATATTGATGATTTTCTTTTACACGAAAATCTTTTCTTTGCCCTA
376 TCTCCTCCA-TAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
565677 TTTTCCTTAAAATCAAAGTT
440 TTTTCCTTAAAATCAAAGTT
*
565697 CATTCCTTAAATAAGGCTAGCATTGATTC
1 CATTCCTTAAATAAGGCAAGCATTGATTC
565726 ATGGATGATC
Statistics
Matches: 8271, Mismatches: 869, Indels: 454
0.86 0.09 0.05
Matches are distributed among these distances:
456 275 0.03
457 313 0.04
458 1869 0.23
459 1146 0.14
460 402 0.05
461 9 0.00
462 6 0.00
463 1 0.00
464 6 0.00
465 5 0.00
466 5 0.00
467 1 0.00
468 1 0.00
469 4 0.00
470 6 0.00
471 5 0.00
472 16 0.00
473 612 0.07
474 658 0.08
475 1986 0.24
476 928 0.11
477 6 0.00
478 4 0.00
484 1 0.00
485 3 0.00
486 2 0.00
488 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (459 bp):
CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGGAACC
AAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTC
TTTCAACCGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCACACA
AATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAAAAGCATACACGATATTG
ATGATTTGGTTTCGTAACCAATTTCAGTAAAGTCTATGTTCGTGCCTCAAATGTGCCAAACATGG
ATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCATAGGAT
AAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
AGTT
Found at i:558536 original size:934 final size:934
Alignment explanation
Indices: 555893--565725 Score: 13386
Period size: 934 Copynumber: 10.5 Consensus size: 934
555883 ATAAGGAGTA
* *
555893 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCAACTCTTTTCGAGATTCGAAAGC
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGAAACC
* *
555958 AAAAACACATTCCTTTCTTTAGGAGACAGGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTC
66 AAAAACACATTCCTTTCATTAGGATACAGGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTC
556023 TTTCAACCGTTTTTGATGGAATCAAAGTCTGTCTCTTAAATAAGACAAACATTAATAGTCACACA
131 TTTCAACCGTTTTTGATGGAATCAAAGTCTGTCTCTTAAATAAGACAAACATTAATAGTCACACA
*
556088 AATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTTGTCTGCTCAAAAGCATACACGATATTG
196 AATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTGCTCAAAAGCATACACGATATTG
*
556153 ATGATTTGGTTTCGTAACCAATTTCAGTAAAGTCTATGTTTGTGCCTCCAATGTGCCAAACATGG
261 ATGATTTGGTTTCGTAACCAATTTCAGTAAAGTCTATGTTTGTGCCTCAAATGTGCCAAACATGG
*
556218 ATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAACTTCTTCTCCTCCATAGGAT
326 ATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCATAGGAT
556283 AAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
391 AAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * *
556348 GGTTCATTCCTCAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATT-CA
456 AGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTGGA
* * * **
556412 GAACCAAAAACACATTCCTTTCAATAGGATGCACGACATTAACGCTTTAATGTTGCAAGAAAAGC
521 -AACCAAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCACAAGAAAAGC
* * * * * * *
556477 ATTTCTTTCAACTGTTTTTGATGGAATCAAAGTCTATCTCTTAAAAAAGACAAACATTAATAGTC
585 ATTTCTTTCAACCGTTTTTGATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTC
* *
556542 ACACAAAT-CTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTGCTCA-AAAGCATACACG
650 ACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAAG-ATACATG
* * ** * *
556605 ATATTGA-----T-GA-TT-T--G----G-TTTCGT--AACCAATTTCAGTAAGGTCTATGTTTG
714 ATATTGATGCTTTGGATTTGTAAGAAATGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCG
* * *
556653 TGCCTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTAT
779 TGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCATCATTCACGTTGTGATTAGGCAGTAT
* *
556718 AAACTTATTCTCCTCCA-TAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATATTTTCT
844 AAACTTATTC-CCT-TATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCT
*
556782 TTGCCCTATTTTCCTTAAAATCAAGGTT
907 TTGCCCTATTTTCCTTAAAATCAAAGTT
* *
556810 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTCTTTTCGAGATTCAAAACC
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGAAACC
* * *
556875 AAAAACACATTCCTTTCAATAGGATACACGACATTGACGCTTTAATGTCACAAGAAAAGCATTT-
66 AAAAACACATTCCTTTCATTAGGATACAGGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTC
* * *
556939 TTTCAACCGTTTTTGATGGAATCAAAGTCTATCTCTTAAAAAAGACAAACATTAATAGTCACCCA
131 TTTCAACCGTTTTTGATGGAATCAAAGTCTGTCTCTTAAATAAGACAAACATTAATAGTCACACA
*
557004 AATCCTCATTCTTTTTTGGATCAGGCACCATAAACTTAGTCTGCTCAAAAGCATACACGATATTG
196 AATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTGCTCAAAAGCATACACGATATTG
* * *
557069 ATGATTTGGTTTCATAACCAATTTCAGTAAAGTCTATGTTTGTGCCTTAAATGTGCCAAACATTG
261 ATGATTTGGTTTCGTAACCAATTTCAGTAAAGTCTATGTTTGTGCCTCAAATGTGCCAAACATGG
* * * *
557134 ATTCTAGTATTGATCTTCATTCACGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCTTAAGAT
326 ATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCATAGGAT
*
557199 AAATGATATGGATGATTTTCTTTTGCATGAAAATCTTTTCTTTG--CTATTTTCCTTAAAATCAA
391 AAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * * *
557262 AGTTCATTCCCTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCAAGTTTGGG
456 AGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTGGA
* * * * * *
557327 AACAAAAAACACATTCCTTTCATTAGGATATGCGACATTGATGCTTTAATGTCATAGGAAAAGCA
521 AACCAAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCACAAGAAAAGCA
** *
557392 TTTCTTTCAAATGTTTTTGATAGTACCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCA
586 TTTCTTTCAACCGTTTTTGATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCA
* * *
557457 TACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAATGATACATGAT
651 CACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAAGATACATGAT
* *
557522 ATTGATGCTTTGGTTTTGTAAGAAATGCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTCGTG
716 ATTGATGCTTTGGATTTGTAAGAAATGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTG
* * * *
557587 CCACAAATGTGACGAACATGGGTTCTAGTAATGATCATCATTCACATTGTGATTAGGCAGTATAA
781 CCTCAAATGTGACAAACATGGATTCTAGTAATGATCATCATTCACGTTGTGATTAGGCAGTATAA
* * *
557652 ACTTATTCACTTATTGGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTAC
846 ACTTATTCCCTTATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
*
557717 CCTATTTTCCTTAAAATCAAAGTA
911 CCTATTTTCCTTAAAATCAAAGTT
* *
557741 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCAACTCTTTTCGAGATTCGAAAGC
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGAAACC
* *
557806 AAAAACACATTCCTTTCTTTAGGAGACAGGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTC
66 AAAAACACATTCCTTTCATTAGGATACAGGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTC
557871 TTTCAACCGTTTTTGATGGAATCAAAGTCTGTCTCTTAAATAAGACAAACATTAATAGTCACACA
131 TTTCAACCGTTTTTGATGGAATCAAAGTCTGTCTCTTAAATAAGACAAACATTAATAGTCACACA
*
557936 AATCCTCATTCTTTTTTGGATTAGGCACCAGAAACTTAGTCTGCTCAAAAGCATACACGATATTG
196 AATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTGCTCAAAAGCATACACGATATTG
*
558001 GTGATTTGGTTTCGTAACCAATTTCAGTAAAGTCTATGTTTGTGCCTCAAATGTGCCAAACATGG
261 ATGATTTGGTTTCGTAACCAATTTCAGTAAAGTCTATGTTTGTGCCTCAAATGTGCCAAACATGG
*
558066 ATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAATATAAACTTATTCTCCTCCATAGGAT
326 ATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCATAGGAT
558131 AAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
391 AAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * *
558196 AGTTCATTCCCTAAATAAGGCAAGCATTGATTCTCACAACAATCTCCACTCTTTTCGTGATTGGA
456 AGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTGGA
* * * * **
558261 AACAAAAAACACATTCCTTTCATTAGGATATGCGACATTGATGCTTTAATGTCATTAGAAAAGCA
521 AACCAAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCACAAGAAAAGCA
* *
558326 TTTCTTTCAACTGTTTTTGATAGTACCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCA
586 TTTCTTTCAACCGTTTTTGATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCA
* * * * *
558391 TACTAATCCTCATTCTTTTTTTGATTAGGCACCATAAACATAGTCTTCTCATAATGATACATGAT
651 CACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAAGATACATGAT
* *
558456 ATTGATGCTTTGGAGTTGTAAGAAATGCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTCGTG
716 ATTGATGCTTTGGATTTGTAAGAAATGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTG
* * * * *
558521 CCACAAATGTGACGAACATGGGTTCTAGTAATGATCATCATTCACATTGTGATTAAGCAGTATAA
781 CCTCAAATGTGACAAACATGGATTCTAGTAATGATCATCATTCACGTTGTGATTAGGCAGTATAA
* * *
558586 ACTTATTCACTTATTGGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTAC
846 ACTTATTCCCTTATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
*
558651 CCTATTTTCCTTAAAATCAAAGTA
911 CCTATTTTCCTTAAAATCAAAGTT
* *
558675 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCAACTCTTTTCGAGATTCGAAAGC
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGAAACC
* *
558740 AAAAACACATTCCTTTCTTTAGGAGACAGGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTC
66 AAAAACACATTCCTTTCATTAGGATACAGGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTC
558805 TTTCAACCGTTTTTTGATGGAATCAAAGTCTGTCTCTTAAATAAGACAAACATTAATAGTCACAC
131 TTTCAACCG-TTTTTGATGGAATCAAAGTCTGTCTCTTAAATAAGACAAACATTAATAGTCACAC
558870 AAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTGCTCAAAAGCATACACGATATT
195 AAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTGCTCAAAAGCATACACGATATT
558935 GATGATTTGGTTTCGTAACCAATTTCAGTAAAGTCTATGTTTGTGCCTCAAATGTGCCAAACATG
260 GATGATTTGGTTTCGTAACCAATTTCAGTAAAGTCTATGTTTGTGCCTCAAATGTGCCAAACATG
*
559000 GATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAACTTATTCTCCCCCATAGGA
325 GATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCATAGGA
559065 TAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
390 TAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * **
559130 AGGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTCTTTTCGAGATTCA
455 AAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTGG
*
559195 AAACCAAAAACACATTCCTTTCAATAGGATACACGACATTGACGCTTTAATGTCACAAGAAAAGC
520 AAACCAAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCACAAGAAAAGC
* * * * * *
559260 ATTT-TTTCAACCGTTTTTGATGGAATCAAAGTCTATCTCTTAAAAAAGACAAACATTAATAGTC
585 ATTTCTTTCAACCGTTTTTGATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTC
* * * *
559324 ACCCAAATCCTCATTCTTTTTTGGATCAGGCACCATAAACTTAGTCTGCTCA-AAAGCATACACG
650 ACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAAG-ATACATG
* * * ** *
559388 ATATTGA-----T-GA-TT-T--G----G-TTTCAT--AACCGATTTCAGTAAAGTCTATGTTTG
714 ATATTGATGCTTTGGATTTGTAAGAAATGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCG
* * * * *
559436 TGCCTTAAATGTGCCAAACATTGATTCTAGTATTGATCTTCATTCACGTTGTGATTAGGCAGTAT
779 TGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCATCATTCACGTTGTGATTAGGCAGTAT
** * *
559501 AAACTTATTCTCCTCCTTAAGATAAATGATATGGATGATTTTCTTTTGCATGAAAATCTTTTCTT
844 AAACTTATTC-CCTTATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTT
559566 TG--CTATTTTCCTTAAAATCAAAGTT
908 TGCCCTATTTTCCTTAAAATCAAAGTT
* * * * * *
559591 CATTCCCTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCAAGTTTGGGAACA
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGAAACC
* * **
559656 AAAAACACATTCCTTTCATTAGGATA-TGCGACATTGATGCTTTAATGTCATAAGAAAAGCATTT
66 AAAAACACATTCCTTTCATTAGGATACAG-GACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
** * * * * * *
559720 CTTTCAAATGTTTTTGATAGTACCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATAC
130 CTTTCAACCGTTTTTGATGGAATCAAAGTCTGTCTCTTAAATAAGACAAACATTAATAGTCACAC
* * * *
559785 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAATG-ATACATGATAT
195 AAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTGCTCA-AAAGCATACACGATAT
* * ** * *
559849 TGATGCTTTGGTTTTGTAAGAAATGCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTCGTGCC
259 TGATGATTTGGTTTCGT-----A------------ACCAATTTCAGTAAAGTCTATGTTTGTGCC
* * * * *
559914 ACAAATGTGACGAACATGGGTTCTAGTAATGATCATCATTCACT-TTGTGATTAGGCAGTATAAA
307 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCA-TGTTGTGATTAGGCAGTATAAA
* * *
559978 CTTATTC-ACT-TATTGGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
371 CTTATTCTCCTCCA-TAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
* *
560041 CCCTATTTTCCTTAAAATCAAAGTACATTCCTTAAATAAGGCAAGCATTGTTTCTCATAACAATC
435 CCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATC
* * ** ** * *
560106 TCAACTCTTTTCGAGATTCGAATGCAAAAACACATTCCTTTCTTTAGGATACACGACATTGATGC
500 TCCACTCTTTTCGAGATTGGAAACCAAAAACACATTCCTTTCAATAGGATACGCGACATTGACGC
* * * * *
560171 TTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTCGATGGAATCAAAGTCTGTCTCTTAAA
565 TTTAATGTCACAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAACCAAAGTTTGTCTCTTAAA
*
560236 TAAGACAAACATTAATAGTCACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGT
630 TAAGACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGT
* * * *
560301 CTGCTCA-AAAGCATACACGATATTG--G---T-GA-TT-T--G----G-TTTCGT--AACCAAT
695 CTTCTCATAAAG-ATACATGATATTGATGCTTTGGATTTGTAAGAAATGCTTTCTTCCCACCAAT
* * * *
560348 TTTCAGTAAAGTCTATGTTTGTGCCTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATT
759 TTT-GGTAAAGTCTATGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCATCATT
* *
560413 CATGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCA-TAGGATAAATGATATGGATGATTTTC
823 CACGTTGTGATTAGGCAGTATAAACTTATTC-CCT-TATTAGGATAAATGATATGGATGATTTTC
*
560477 TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAGGTT
886 TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTT
* *
560526 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTCTTTTCGAGATTCAAAACC
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGAAACC
* * *
560591 AAAAACACATTCCTTTCAATAGGATACACGACATTGACGCTTTAATGTCACAAGAAAAGCATTT-
66 AAAAACACATTCCTTTCATTAGGATACAGGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTC
* * *
560655 TTTCAACCGTTTTTGATGGAATCAAAGTCTATCTCTTAAAAAAGACAAACATTAATAGTCACCCA
131 TTTCAACCGTTTTTGATGGAATCAAAGTCTGTCTCTTAAATAAGACAAACATTAATAGTCACACA
*
560720 AATCCTCATTCTTTTTTGGATCAGGCACCATAAACTTAGTCTGCTCAAAAGCATACACGATATTG
196 AATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTGCTCAAAAGCATACACGATATTG
* * * *
560785 ATGATTTGGTTTCATAACCGATTTCAGTAAAGTCTATGTTTGTGCCTTAAATGTGCCAAACATTG
261 ATGATTTGGTTTCGTAACCAATTTCAGTAAAGTCTATGTTTGTGCCTCAAATGTGCCAAACATGG
* * * * *
560850 ATTCTAGTATTGATCTTCATTCACGTTGTGATAAGGCAGTATAAACTTATTCTCCTCCTTAAGAT
326 ATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCATAGGAT
*
560915 AAATGATATGGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
391 AAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* *
560980 AGTTCATTCCCTAAATAAGGCAAGCATTGATTCTCACAACAATCTCCACTCTTTTCGAGATTGGA
456 AGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTGGA
* * * * **
561045 AACAAAAAACACATTCCTTTCATTAGGATATGCGACATTGATGCTTTAATGTCATTAGAAAAGCA
521 AACCAAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCACAAGAAAAGCA
* *
561110 TTTCTTTCAACTGTTTTTGATAGTACCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCA
586 TTTCTTTCAACCGTTTTTGATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCA
* * * *
561175 TACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACATAGTCTTCTCATAATGATACATGAT
651 CACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAAGATACATGAT
* *
561240 ATTGATGCTTTGGTTTTGTAAGAAATGCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTCGTG
716 ATTGATGCTTTGGATTTGTAAGAAATGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTG
* * * *
561305 CCACAAATGTGACGAACATGGGTTCTAGTAATGATCATCATTCACTTTGTGATTAGGCAGTATAA
781 CCTCAAATGTGACAAACATGGATTCTAGTAATGATCATCATTCACGTTGTGATTAGGCAGTATAA
* *
561370 ACTTATTCACTTATTGGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
846 ACTTATTCCCTTATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
*
561435 CCTATTTTCCTTAAAATCAAAGTA
911 CCTATTTTCCTTAAAATCAAAGTT
* * **
561459 CATTCCTTAAATAAGGCAAGCATTGTTTCTCATAACAATCTCAACTCTTTTCGAGATTCGAATGC
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGAAACC
* * *
561524 AAAAACACATTCCTTTCTTTAGGATACACGACATTGATGCTTTAATGTCGCAAGAAAAGCATTTC
66 AAAAACACATTCCTTTCATTAGGATACAGGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTC
*
561589 TTTCAACCGTTTTCGATGGAATCAAAGTCTGTCTCTTAAATAAGACAAACATTAATAGTCACACA
131 TTTCAACCGTTTTTGATGGAATCAAAGTCTGTCTCTTAAATAAGACAAACATTAATAGTCACACA
561654 AATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTGCTCAAAAGCATACACGATATTG
196 AATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTGCTCAAAAGCATACACGATATTG
* *
561719 GTGATTTGGTTTCGTAACCAATTTCAGTAAAGTCTATGTTTGTGCCTCAAATGTGCCAAACGTGG
261 ATGATTTGGTTTCGTAACCAATTTCAGTAAAGTCTATGTTTGTGCCTCAAATGTGCCAAACATGG
* * *
561784 ATTCTAGTAATGACCTTCATTCATGTTGTGATTAGGCAGTATAAACTTATTCTCTTCCTTAGGAT
326 ATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCATAGGAT
*
561849 AAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTGCTTTGCCCTATTTTCCTTAAAATCAA
391 AAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * * *
561914 AGCTCATTCCCTGAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTGGG
456 AGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTGGA
* * * **
561979 AACCAAAAACCCATTCCTTTCAATAGGATACGTGACA-TGACGCTTTAATATCGTAAGAAAAGCA
521 AACCAAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCACAAGAAAAGCA
* * * * *
562043 TTTCATTCAACCGTTTTTGATAAAATCAAAGTTTGTCTCCTAAATAAGACAAACATTAATAGTCA
586 TTTCTTTCAACCGTTTTTGATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCA
* *
562108 CACAAATCCTTATTCTTTTTTTGATTAGGCACCATAAACTTAGTCTTCTCA-AAAGCATACATGA
651 CACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAAG-ATACATGA
* *
562172 TATTGATGGTTTGG-TTTCGTAAGAAA-GCTTTCTCCCCACCAATTTTGGTAAAGTCTATGTTCG
715 TATTGATGCTTTGGATTT-GTAAGAAATGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCG
*
562235 TGCCTCAAATGTG-CAAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTA
779 TGCCTCAAATGTGAC-AAACATGGATTCTAGTAATGATCATCATTCACGTTGTGATTAGGCAGTA
** *
562299 TAAACTTATTCTCCTCCTTAGGATAAATGATATGGATGATTTTCTTTTCCATGGAAATCTTTTCT
843 TAAACTTATTC-CCTTATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCT
562364 TTGCCCTATTTTCCTTAAAATCAAAGTT
907 TTGCCCTATTTTCCTTAAAATCAAAGTT
* * * *
562392 CACTCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTCTTTTCGAGATTGGGAACC
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGAAACC
* *
562457 AAAAAAACATTCCTTTCAATAGGATAC-GCGACATTGATC-CTTTAATGTCGCAAGAAAAGCATT
66 AAAAACACATTCCTTTCATTAGGATACAG-GACATTGA-CGCTTTAATGTCGCAAGAAAAGCATT
*
562520 TCTTTCAACCGTTTTTGATGGAATCAAAGTCTGTCTCTTAAAAAAGACAAACATTAATAGTCACA
129 TCTTTCAACCGTTTTTGATGGAATCAAAGTCTGTCTCTTAAATAAGACAAACATTAATAGTCACA
* *
562585 CAAAT-CTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTACTCAAAAGCATACACGACAT
194 CAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTGCTCAAAAGCATACACGATAT
*
562649 TGATGATTTGGTTTCGTAACCAATTTCAATAAAGTCTATGTTTGTGCCTCAAATGTGCCAAACAT
259 TGATGATTTGGTTTCGTAACCAATTTCAGTAAAGTCTATGTTTGTGCCTCAAATGTGCCAAACAT
* *
562714 GGATTCTAGTAATGATCTTCGTTCATGTTGTGATTAGGTAGTATAAACTTATTCTCCTCCATAGG
324 GGATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCATAGG
562779 ATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
389 ATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * *
562844 AAAGTTCACTCTTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCTCTCTTTTCGAGATTG
454 AAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTG
* * ** * * * * *
562909 GGAACCAAAAAAACATTCCTTTCAATAGGATACATGACATTGACACTTTAATGACGCATGAAAGG
519 GAAACCAAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCACAAGAAAAG
* * * * * *
562974 CTTTTCTTCCCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATTG-
584 CATTTCTTTCAACCGTTTTTGATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGT
563038 CTACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAAGATACAT
649 C-ACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAAGATACAT
* * * * * *
563103 GATATTGAATG-TTTGGCTTTGTAAGAAAGGCTTTATTCCCTCCAATTTTGGAAAAGTCTAAGTT
713 GATATTG-ATGCTTTGGATTTGTAAGAAATGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTT
* * * * * * * * *
563167 CGTGCCTCAATTGTGGCAAACATAGATTGTAGTAACGATCATCATTTACTTTGTGATAAGGCACT
777 CGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCATCATTCACGTTGTGATTAGGCAGT
** *
563232 ATAAACAAAGTCTCCTTATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTC
842 ATAAACTTATTC-CCTTATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTC
*
563297 TTTGTCCC-ATTTTCCTTAAAATCAAATTT
906 TTTG-CCCTATTTTCCTTAAAATCAAAGTT
* * * *
563326 TATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTATTTTCGAGATTGGGAACC
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGAAACC
** * * * * * *
563391 AAAAATGCATTCCATTCAATAGGATA-TGCGACATTGACTCTTTAATGTCACAAGAAAAACATTT
66 AAAAACACATTCCTTTCATTAGGATACAG-GACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
* * * * * * * *
563455 CTCTCAACTGTTTTTGATAGTACCAAAGTTTGTCTCTTAAGTAAGA-AAACA-TAATAGTCATAC
130 CTTTCAACCGTTTTTGATGGAATCAAAGTCTGTCTCTTAAATAAGACAAACATTAATAGTCACAC
* * * * *
563518 CAATCCTCATTAC-TTTTTGGATAAGGCACCATAAACTTGGTCTTC-CATAATG-ATACACGATA
195 AAATCCTCATT-CTTTTTTGGATTAGGCACCATAAACTTAGTCTGCTCA-AAAGCATACACGATA
* * * ** * * **
563580 TTGATGCTTGGGTTTTGTAAGAAATGCTTTCTTCCCACTAATTTTGGTAAAGTCTACGTTCGAAC
258 TTGATGATTTGGTTTCGT----AA-----------C-C-AATTTCAGTAAAGTCTATGTTTGTGC
* * * *
563645 CTCAAATGTGACAAACATGGATTCTAGTATTGATCATCAATCACT-TTGTGATTAGGCAGTATAA
306 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCA-TGTTGTGATTAGGCAGTATAA
* * *
563709 ACTTATTCTCATCCTTACGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
370 ACTTATTCTCCTCCATAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
* *
563774 CCCTATTTTCTTTAAAATCAAAGTTCATTCCTTAAATGAGGCAAGCATTGATTCTCATAACAATC
435 CCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATC
* * *
563839 TCCACTGTTTTGGAGATTGGGAACCAAAAACACATTCCTTTCAATAGGATACGCGACATTGACGC
500 TCCACTCTTTTCGAGATTGGAAACCAAAAACACATTCCTTTCAATAGGATACGCGACATTGACGC
* * * * *
563904 TTTCATGTCGCAAGAAAAGCATTTCTTTCAACTGTTTTTGATAGTACCAAAGTTTATCTCTTAAA
565 TTTAATGTCACAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAACCAAAGTTTGTCTCTTAAA
* * * * * *
563969 TAAGACAAACATGAATATTCATACTAATCCTCAATATTTTTTTGATTAGGCACTC-TAAACTTAG
630 TAAGACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGATTAGGCAC-CATAAACTTAG
* * * * **
564033 TCTTCTCATAATGATACACGATATTGAT-CGTTTGGTTTTGTAAGAAATGCTTTTTTCCTGCCAA
694 TCTTCTCATAAAGATACATGATATTGATGC-TTTGGATTTGTAAGAAATGCTTTCTTCCCACCAA
* * *
564097 TTTTGGTAAAGTCTATGTTCATGCCTCAAATGTGACAAACATGGATTCTAGTAATAATTATCATT
758 TTTTGGTAAAGTCTATGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCATCATT
* * *
564162 CACTTTGTGATTAGGCACTATAAACTTATTCTCTTATTAGGATAAATGATATGGATGATTTTCTT
823 CACGTTGTGATTAGGCAGTATAAACTTATTCCCTTATTAGGATAAATGATATGGATGATTTTCTT
* * * *
564227 TTGCACGAAAATATTTTCTTTGCCCTATTTTCCTCAAAATCAAAGTT
888 TTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTT
* * * * * * *
564274 CATTCCCTAAATAAGGCTAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCAAGATTGGGAACC
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGAAACC
** * * *
564339 AAAAACACATTCCTTTTGTTAGGATAC-GCGACATTGACGCTTTAATGTCGCATGAAAGGCTTTT
66 AAAAACACATTCCTTTCATTAGGATACAG-GACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
* * *
564403 CTTCCAACCGTTTTTGATAGG-ATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
130 CTTTCAACCGTTTTTGAT-GGAATCAAAGTCTGTCTCTTAAATAAGACAAACATTAATAGTCACA
* * * * * *
564467 CAAATGCTCATTCTCTTTTGGATTAGGCACCATAAACTTAGTCTTCTCACAAGGATACAAGATAT
194 CAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTGCTCAAAAGCATACACGATAT
* * * * * *
564532 TGATGGTTTGGTTTTGTAAGAAAGGCCTTATTCTCACCAATTTTGGAAAGTCTAAGTTCGTGCCT
259 TGATGATTTGGTTTCGT----AA--CC-AATT-T---C-A----GTAAAGTCTATGTTTGTGCCT
* * * * * * * * * *
564597 GAATTGTGGCAAACATGGATTGTAGTAACGATCTTCATTTACT-TTATGATAAGGCACTATGAAC
308 CAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCA-TGTTGTGATTAGGCAGTATAAAC
** * * * *
564661 AAAGTCTCCT-TATTAGGATAAATGATGTGGATGATTTTCTTTTGCATGTAAATCTTTTCTTTGC
372 TTATTCTCCTCCA-TAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* *
564725 CCTATTTTCCTAAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTTATAACAATCT
436 CCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCT
*
564790 CCACTCTTTTCGAGATTTGG-AACCAAAAACACATTCCTTTCAATAGGATACGTGACATTGACGC
501 CCACTCTTTTCGAGA-TTGGAAACCAAAAACACATTCCTTTCAATAGGATACGCGACATTGACGC
* * *
564854 TTTAATGTCGCAAGAAAAACATTTCTTTCAACCGTTTTTGATAGTACCAAAGTTTGTCTCTTAAA
565 TTTAATGTCACAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAACCAAAGTTTGTCTCTTAAA
* * *
564919 TAAGACAAACATGAATAGTCATACTAATCCTCATTATTTTTTGGATTAGGCACCATAAACTTAGT
630 TAAGACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGT
* *
564984 CTTCTCATAATGATACATGATATTGATGCTTTGGTTTTGTAAGAAATGCTTTCTTCCCACCAATT
695 CTTCTCATAAAGATACATGATATTGATGCTTTGGATTTGTAAGAAATGCTTTCTTCCCACCAATT
* *
565049 TTGGTAAAGTCTACGTTCGTGCCTCAAATGTGACAGACATGGATTCTAGTAATGATCATCATTCA
760 TTGGTAAAGTCTATGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCATCATTCA
* * * *
565114 CTTTGTGATTAGGCACTATAAACTTATTCTCTTGTTAGGATAAATGATAAT-GATGATTTTCTTT
825 CGTTGTGATTAGGCAGTATAAACTTATTCCCTTATTAGGATAAATGAT-ATGGATGATTTTCTTT
* * * * *
565178 CGCATAGAAATCTTTTCTTCGCCCTATTTTTCTTAAAATTAAAGTT
889 TGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTT
* * * *
565224 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAAGAATCTCCGCTCTTTTCGAGATTGGGAACC
1 CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGAAACC
* * * * *
565289 AAAAGCACATTCCTTTCAATAGGATAC-GCGACATTGATGCTTTAATGTCGTAAGAAAAGGCTTT
66 AAAAACACATTCCTTTCATTAGGATACAG-GACATTGACGCTTTAATGTCGCAAGAAAA-GCATT
* * * **
565353 TCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATCCATAGTCACA
129 TCTTTCAACCGTTTTTGATGGAATCAAAGTCTGTCTCTTAAATAAGACAAACATTAATAGTCACA
* * * *
565418 CAAATCCTCATTCTTTTTTGGATTTGGCACCATAAACTTAGTCCT-CTCATAAGGATACATGATA
194 CAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGT-CTGCTCAAAAGCATACACGATA
* * ** ** **
565482 TTGATCATTTGGTTTTGTAAGAAATGCTTTCCCCCCGCCAATTGTAAAGTCTACATCCGTGCCTC
258 TTGATGATTTGGTTTCGTAACCAA---TTT--------C-A--GTAAAGTCTATGTTTGTGCCTC
* * * * * *
565547 AAATGTGACAAACATGGATTCTAGTAATAATCATCATTCATTTTGTGATTAGGCACTATAAAATT
309 AAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAACTT
* * * * * *
565612 ATTCT-CT-TATTAGGATAAGTGATATTGATGATTTTCTTTTACACGAAAATCTTTTCTTTGCCC
374 ATTCTCCTCCA-TAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
*
565675 TATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCTAGCATTGATTC
438 TATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTC
565726 ATGGATGATC
Statistics
Matches: 8020, Mismatches: 742, Indels: 277
0.89 0.08 0.03
Matches are distributed among these distances:
914 192 0.02
915 176 0.02
916 438 0.05
917 291 0.04
918 351 0.04
919 8 0.00
920 4 0.00
921 1 0.00
922 2 0.00
923 2 0.00
924 2 0.00
925 3 0.00
926 2 0.00
927 2 0.00
928 3 0.00
929 3 0.00
930 7 0.00
931 385 0.05
932 1104 0.14
933 951 0.12
934 1671 0.21
935 581 0.07
936 2 0.00
941 5 0.00
942 2 0.00
944 1 0.00
946 1 0.00
947 8 0.00
948 323 0.04
949 577 0.07
950 738 0.09
951 182 0.02
952 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (934 bp):
CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTCGAAACC
AAAAACACATTCCTTTCATTAGGATACAGGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTC
TTTCAACCGTTTTTGATGGAATCAAAGTCTGTCTCTTAAATAAGACAAACATTAATAGTCACACA
AATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTGCTCAAAAGCATACACGATATTG
ATGATTTGGTTTCGTAACCAATTTCAGTAAAGTCTATGTTTGTGCCTCAAATGTGCCAAACATGG
ATTCTAGTAATGATCTTCATTCATGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCATAGGAT
AAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
AGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTGGA
AACCAAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCACAAGAAAAGCA
TTTCTTTCAACCGTTTTTGATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCA
CACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAAGATACATGAT
ATTGATGCTTTGGATTTGTAAGAAATGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTG
CCTCAAATGTGACAAACATGGATTCTAGTAATGATCATCATTCACGTTGTGATTAGGCAGTATAA
ACTTATTCCCTTATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
CCTATTTTCCTTAAAATCAAAGTT
Found at i:565973 original size:252 final size:251
Alignment explanation
Indices: 565525--565977 Score: 667
Period size: 252 Copynumber: 1.8 Consensus size: 251
565515 CCCGCCAATT
* * *
565525 GTAAAGTCTACATCCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATAATCATCATTCATTT
1 GTAAAGTCTACATCCGTGCCTCAAATATGACAAACATGGATTCTAGTAACAATCATCATTCACTT
* * * * * *
565590 TGTGATTAGGCACTATAAAATTATTCTCTTATTAGGATAAGTGATATTGATGATTTTCTTTTACA
66 TGTGATAAGGCACTATAAAATAAGTCTCTTATTAGGATAAATGACATGGATGATTTTCTTTTACA
* *
565655 CGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCTAGCAT
131 CGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAAACAAAGTTCATTCCTTAAATAAGGCAAGCAT
565720 TGATTCATGGATGATCATTTGGTTTCGTATTAAAGGCTTGATTCCCACCAATTTTG
196 TGATTCATGGATGATCATTTGGTTTCGTATTAAAGGCTTGATTCCCACCAATTTTG
* * * * * * *
565776 GTAAAGTCTA-AGTTCGTGCCTCAATTATGGCAAACATGGATTGTAGTAACGATCTTCATTTACT
1 GTAAAGTCTACA-TCCGTGCCTCAAATATGACAAACATGGATTCTAGTAACAATCATCATTCACT
*
565840 TTGTGATAAGGCACTATAAACA-AAGTCTCCTTATTAGGATAAATGACCTGGATGATTTTCTTTT
65 TTGTGATAAGGCACTATAAA-ATAAGTCT-CTTATTAGGATAAATGACATGGATGATTTTCTTTT
* * *
565904 GCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAACAAAGTTCATTCCTTAAATAAGGCAAG
128 ACACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAAACAAAGTTCATTCCTTAAATAAGGCAAG
565969 CATTGATTC
193 CATTGATTC
565978 TCATAACAGG
Statistics
Matches: 177, Mismatches: 22, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
250 1 0.01
251 75 0.42
252 101 0.57
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (251 bp):
GTAAAGTCTACATCCGTGCCTCAAATATGACAAACATGGATTCTAGTAACAATCATCATTCACTT
TGTGATAAGGCACTATAAAATAAGTCTCTTATTAGGATAAATGACATGGATGATTTTCTTTTACA
CGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAAACAAAGTTCATTCCTTAAATAAGGCAAGCAT
TGATTCATGGATGATCATTTGGTTTCGTATTAAAGGCTTGATTCCCACCAATTTTG
Found at i:566639 original size:477 final size:475
Alignment explanation
Indices: 565761--566835 Score: 1548
Period size: 477 Copynumber: 2.3 Consensus size: 475
565751 AAAGGCTTGA
* * * * *
565761 TTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTATGGCAAACATGGATTGTAGTAAC
1 TTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAAT
* * * * * ** * *
565826 GATCTTCATTTACTTTGTGATAAGGCACTATAAACAAAGTCTCCTTATTAGGATAAATGACCTGG
66 GATCATCATTCACTTTGTGATTAGGCACTATAAACATATTCTCCGCATTAGGATAAATGACATGA
* * *
565891 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAACAAAGTTCATTCCT
131 ATGATTTTCTTTTGCATGAAAACCTTTTCTTTGCCATATTTTCCTTAAAAACAAAGTTCATTCCT
*
565956 TAAATAAGGCAAGCATTGATTCTCATAACAGGCTCCAACTCTTTTCGAGATTGAGAACCAAAAAC
196 TAAATAAGGCAAGCATTGATTCTCATAACAAGCTCCAACTCTTTTCGAGATTGAGAACCAAAAAC
*
566021 ACATTCCTTTCAATAGGATATGTGACATTGACGCTTTAATGTCGCAACAAAAGCATTTCTTTCAA
261 ACATTCCTTTCAATAGGATACGTGACATTGACGCTTTAATGTCGCAACAAAAGCATTTCTTTCAA
* *
566086 CCATTTTTGATAGCACCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCT
326 CCATTTTTAATAGCACCAAAGTTTGTCTCATAAATAAGACAAACATGAATAGTCATACTAATCCT
* *
566151 CATTCTTTTTTGGATTAGGCACCATAAACTTAATCTTCTCGTAATGATACATGATATTGATGCCT
391 CATTCTTTTTT-GATTAGGCACCATAAACTTAATCTTCTCATAATGATACACGATA-TGATGCCT
*
566216 TGGTTTTATAAGAAATGCTTTT
454 TGGTTTTATAAGAAATGCTTTC
* * * * *
566238 TTCCCATCAATTTTGGTAGAGTTTATGTTCGTGCCTCAAATGTGACAAACATGGATTCCAGTAAT
1 TTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAAT
* * * * *
566303 GATCATC-TATCACTTTGTGATTAGGCAGTATAAACTTATTCTCCGCCTTATGATAAATGATATG
66 GATCATCAT-TCACTTTGTGATTAGGCACTATAAACATATTCTCCGCATTAGGATAAATGACATG
* * *
566367 AATGATTTTCTTTTGCATGAAAACCTTTTCTTTGCCATATTTTCTTTATAATCAAAGTTCATTCC
130 AATGATTTTCTTTTGCATGAAAACCTTTTCTTTGCCATATTTTCCTTAAAAACAAAGTTCATTCC
* * * * *
566432 TTAAATGAGGCAAGCATTGATTCTCATAACAATCTCC-GCTCTTTTCGAGATTGGGAACCAAAAG
195 TTAAATAAGGCAAGCATTGATTCTCATAACAAGCTCCAACTCTTTTCGAGATTGAGAACCAAAAA
* *
566496 CACATTCCTTTCAATAGGATACGTGACATTG-CTGCTTTAATGTCGTAAGAAAAGCATTTCTTTC
260 CACATTCCTTTCAATAGGATACGTGACATTGAC-GCTTTAATGTCGCAACAAAAGCATTTCTTTC
* * * *
566560 AACCGTTTTTAATAGTACTAAAGTTTGTCTCATAAATAAGGCAAACATGAATAGTCATACTAATC
324 AACCATTTTTAATAGCACCAAAGTTTGTCTCATAAATAAGACAAACATGAATAGTCATACTAATC
* * *
566625 CTCATTCTTTTTTTGATTAGGCACCATAAACTTAGTTTTCTCATAATGATACACGATATGATGCT
389 CTCATTC-TTTTTTGATTAGGCACCATAAACTTAATCTTCTCATAATGATACACGATATGATGCC
*
566690 TTGGTTTTGTAAGAAATGCTTTC
453 TTGGTTTTATAAGAAATGCTTTC
*
566713 TTCCCACCAATTTTGAG-AAAGTCTACA-TTCGTACCTCAAATGTGACAAACATGGATTCTAGTA
1 TTCCCACCAATTTTG-GTAAAGTCTA-AGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTA
***
566776 ATGATCATCATTCACTTTGTGATTAGGCACTATAAACATATTCTTTTCATTAGGATAAAT
64 ATGATCATCATTCACTTTGTGATTAGGCACTATAAACATATTCTCCGCATTAGGATAAAT
566836 ATGACAAACA
Statistics
Matches: 527, Mismatches: 65, Indels: 14
0.87 0.11 0.02
Matches are distributed among these distances:
475 133 0.25
476 192 0.36
477 202 0.38
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (475 bp):
TTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAAT
GATCATCATTCACTTTGTGATTAGGCACTATAAACATATTCTCCGCATTAGGATAAATGACATGA
ATGATTTTCTTTTGCATGAAAACCTTTTCTTTGCCATATTTTCCTTAAAAACAAAGTTCATTCCT
TAAATAAGGCAAGCATTGATTCTCATAACAAGCTCCAACTCTTTTCGAGATTGAGAACCAAAAAC
ACATTCCTTTCAATAGGATACGTGACATTGACGCTTTAATGTCGCAACAAAAGCATTTCTTTCAA
CCATTTTTAATAGCACCAAAGTTTGTCTCATAAATAAGACAAACATGAATAGTCATACTAATCCT
CATTCTTTTTTGATTAGGCACCATAAACTTAATCTTCTCATAATGATACACGATATGATGCCTTG
GTTTTATAAGAAATGCTTTC
Found at i:566652 original size:476 final size:476
Alignment explanation
Indices: 565761--566835 Score: 1557
Period size: 476 Copynumber: 2.3 Consensus size: 476
565751 AAAGGCTTGA
* * * * *
565761 TTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAATTATGGCAAACATGGATTGTAGTAAC
1 TTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAAT
* * * * * ** * *
565826 GATCTTCATTTACTTTGTGATAAGGCACTATAAACAAAGTCTCCTTATTAGGATAAATGACCTGG
66 GATCATCATTCACTTTGTGATTAGGCACTATAAACATATTCTCCGCATTAGGATAAATGACATGA
* * *
565891 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAACAAAGTTCATTCCT
131 ATGATTTTCTTTTGCATGAAAACCTTTTCTTTGCCATATTTTCCTTAAAAACAAAGTTCATTCCT
*
565956 TAAATAAGGCAAGCATTGATTCTCATAACAGGCTCCAACTCTTTTCGAGATTGAGAACCAAAAAC
196 TAAATAAGGCAAGCATTGATTCTCATAACAAGCTCCAACTCTTTTCGAGATTGAGAACCAAAAAC
*
566021 ACATTCCTTTCAATAGGATATGTGACATTGACGCTTTAATGTCGCAACAAAAGCATTTCTTTCAA
261 ACATTCCTTTCAATAGGATACGTGACATTGACGCTTTAATGTCGCAACAAAAGCATTTCTTTCAA
* *
566086 CCATTTTTGATAGCACCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCT
326 CCATTTTTAATAGCACCAAAGTTTGTCTCATAAATAAGACAAACATGAATAGTCATACTAATCCT
* *
566151 CATTCTTTTTTGGATTAGGCACCATAAACTTAATCTTCTCGTAATGATACATGATATTGATGCCT
391 CATTCTTTTTTGGATTAGGCACCATAAACTTAATCTTCTCATAATGATACACGATA-TGATGCCT
*
566216 TGGTTTTATAAGAAATGCTTTT
455 TGGTTTTATAAGAAATGCTTTC
* * * * *
566238 TTCCCATCAATTTTGGTAGAGTTTATGTTCGTGCCTCAAATGTGACAAACATGGATTCCAGTAAT
1 TTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAAT
* * * * *
566303 GATCATC-TATCACTTTGTGATTAGGCAGTATAAACTTATTCTCCGCCTTATGATAAATGATATG
66 GATCATCAT-TCACTTTGTGATTAGGCACTATAAACATATTCTCCGCATTAGGATAAATGACATG
* * *
566367 AATGATTTTCTTTTGCATGAAAACCTTTTCTTTGCCATATTTTCTTTATAATCAAAGTTCATTCC
130 AATGATTTTCTTTTGCATGAAAACCTTTTCTTTGCCATATTTTCCTTAAAAACAAAGTTCATTCC
* * * * *
566432 TTAAATGAGGCAAGCATTGATTCTCATAACAATCTCC-GCTCTTTTCGAGATTGGGAACCAAAAG
195 TTAAATAAGGCAAGCATTGATTCTCATAACAAGCTCCAACTCTTTTCGAGATTGAGAACCAAAAA
* *
566496 CACATTCCTTTCAATAGGATACGTGACATTG-CTGCTTTAATGTCGTAAGAAAAGCATTTCTTTC
260 CACATTCCTTTCAATAGGATACGTGACATTGAC-GCTTTAATGTCGCAACAAAAGCATTTCTTTC
* * * *
566560 AACCGTTTTTAATAGTACTAAAGTTTGTCTCATAAATAAGGCAAACATGAATAGTCATACTAATC
324 AACCATTTTTAATAGCACCAAAGTTTGTCTCATAAATAAGACAAACATGAATAGTCATACTAATC
* * * *
566625 CTCATTCTTTTTTTGATTAGGCACCATAAACTTAGTTTTCTCATAATGATACACGATATGATGCT
389 CTCATTCTTTTTTGGATTAGGCACCATAAACTTAATCTTCTCATAATGATACACGATATGATGCC
*
566690 TTGGTTTTGTAAGAAATGCTTTC
454 TTGGTTTTATAAGAAATGCTTTC
*
566713 TTCCCACCAATTTTGAG-AAAGTCTACA-TTCGTACCTCAAATGTGACAAACATGGATTCTAGTA
1 TTCCCACCAATTTTG-GTAAAGTCTA-AGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTA
***
566776 ATGATCATCATTCACTTTGTGATTAGGCACTATAAACATATTCTTTTCATTAGGATAAAT
64 ATGATCATCATTCACTTTGTGATTAGGCACTATAAACATATTCTCCGCATTAGGATAAAT
566836 ATGACAAACA
Statistics
Matches: 527, Mismatches: 66, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
475 133 0.25
476 198 0.38
477 196 0.37
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (476 bp):
TTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAAT
GATCATCATTCACTTTGTGATTAGGCACTATAAACATATTCTCCGCATTAGGATAAATGACATGA
ATGATTTTCTTTTGCATGAAAACCTTTTCTTTGCCATATTTTCCTTAAAAACAAAGTTCATTCCT
TAAATAAGGCAAGCATTGATTCTCATAACAAGCTCCAACTCTTTTCGAGATTGAGAACCAAAAAC
ACATTCCTTTCAATAGGATACGTGACATTGACGCTTTAATGTCGCAACAAAAGCATTTCTTTCAA
CCATTTTTAATAGCACCAAAGTTTGTCTCATAAATAAGACAAACATGAATAGTCATACTAATCCT
CATTCTTTTTTGGATTAGGCACCATAAACTTAATCTTCTCATAATGATACACGATATGATGCCTT
GGTTTTATAAGAAATGCTTTC
Found at i:566892 original size:82 final size:82
Alignment explanation
Indices: 566750--566917 Score: 266
Period size: 82 Copynumber: 2.0 Consensus size: 82
566740 TTCGTACCTC
* * *
566750 AAATGTGACAAACATGGATTCTAGTAATGATCATCATTCACTTTGTGATTAGGCACTATAAACAT
1 AAATATGACAAACATGGATTCTAGTAATGATCATCATTCACTTTGTGATCAGGCACTATAAACAA
* *
566815 ATTCT-TTTCATTAGGAT
66 AGTCTCCTT-ATTAGGAT
*
566832 AAATATGACAAACATGGATTCTAGTAATGATCATCATTTACTTTGTGATCAGGCACTATAAACAA
1 AAATATGACAAACATGGATTCTAGTAATGATCATCATTCACTTTGTGATCAGGCACTATAAACAA
566897 AGTCTCCTTATTAGGAT
66 AGTCTCCTTATTAGGAT
566914 AAAT
1 AAAT
566918 GATATGGATG
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
82 77 0.97
83 2 0.03
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (82 bp):
AAATATGACAAACATGGATTCTAGTAATGATCATCATTCACTTTGTGATCAGGCACTATAAACAA
AGTCTCCTTATTAGGAT
Found at i:567332 original size:555 final size:557
Alignment explanation
Indices: 566275--567374 Score: 1593
Period size: 555 Copynumber: 2.0 Consensus size: 557
566265 TTCGTGCCTC
* * * **
566275 AAATGTGACAAACATGGATTCCAGTAATGATCATCTATCACTTTGTGATTAGGCAGTATAAACTT
1 AAATATGACAAACATGGATTCCAGTAATGATCATCTATCACTTTGTGATCAGGCACTATAAACAA
* * *
566340 ATTCTCCGCCTTATGATAAATGATATGAATGATTTTCTTTTGCATGAAAACCTTTTCTTTGCCAT
66 AGTCTCCGCATTAGGATAAATGATATGAATGATTTTCTTTTGCATGAAAACCTTTTCTTTGCCAT
* * * * *
566405 ATTTTCTTTATAATCAAAGTTCATTCCTTAAATGAGGCAAGCATTGATTCTCATAACAATCTCCG
131 ATTTTCTTTAGAATCAAAGTTCATTCCTTAAATAAGACAAGCATTGATTCTCATAACAAGCTCCA
* * * **
566470 CTCTTTTCGAGATTGGGAACCAAAAGCACATTCCTTTCAATAGGATACGTGACATTGCTGCTTTA
196 CTCTTTTCGAGATTGAGAACCAAAAACACATTCCTTTCAATAGGATACGCGACATTGAAGCTTTA
* * * *
566535 ATGTCGTAAGAAAAGCATTTCTTTCAACCGTTTTTAATAGTACTAAAGTTTGTCTCATAAATAAG
261 ATGTCGCAAGAAAAGCATTTCTTCCAACCGATTTTAATAGAACTAAAGTTTGTCTCATAAATAAG
* * * * *
566600 GCAAACATGAATAGTCATACTAATCCTCATTCTTTTTTTGATTAGGCACCATAAACTTAGTTTTC
326 ACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTC
* *
566665 TCATAATGATACACGATATGATGCTTTGGTTTTGTAAGAAATGCTTTCTTCCCACCAATTTTGAG
391 TCATAATGATACACGATATGAAGCTTTGGTTTCGTAAGAAATGCTTTCTTCCCACCAATTTTGAG
* *
566730 AAAGTCTACATTCGTACCTCAAATGTGACAAACATGGATTCTAGTAATGATCATCATTCACTTTG
456 AAAGTCTACATTCATACCTCAAATGTGACAAACATGGATTCTAGTAATGATCATCATTCACATTG
566795 TGATTAGGCACTATAAACATATTCTTTTCATTAGGAT
521 TGATTAGGCACTATAAACATATTCTTTTCATTAGGAT
* *
566832 AAATATGACAAACATGGATTCTAGTAATGATCATC-ATTTACTTTGTGATCAGGCACTATAAACA
1 AAATATGACAAACATGGATTCCAGTAATGATCATCTA-TCACTTTGTGATCAGGCACTATAAACA
** * * * *
566896 AAGTCTCCTTATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCT
65 AAGTCTCCGCATTAGGATAAATGATATGAATGATTTTCTTTTGCATGAAAACCTTTTCTTTGCCA
* *
566961 TATTTTCTTTAGAA-CAAAGTTCATTCCTTAAATAAGACAAGCATTGATTCTCGTAACAGGCTCC
130 TATTTTCTTTAGAATCAAAGTTCATTCCTTAAATAAGACAAGCATTGATTCTCATAACAAGCTCC
* *
567025 ACTCTTTTCGAGATTTAGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGAAGCTTT
195 ACTCTTTTCGAGATTGAGAACCAAAAACACATTCCTTTCAATAGGATACGCGACATTGAAGCTTT
* * * *
567090 AATGTCGCATGAAAGGCATTTCTTCCAACC-ATTTTGATAGAA-TCAAAGTTTGTCTCTTAAATA
260 AATGTCGCAAGAAAAGCATTTCTTCCAACCGATTTTAATAGAACT-AAAGTTTGTCTCATAAATA
*
567153 AGACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGTTTAGGCACCATAAACTTAGTCT
324 AGACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCT
* *
567218 TCTCATAA-GTATACACGATATTGAAGGTTTGGTTTCGTAAGAAA-GCTTTCTTCCCACTAATTT
389 TCTCATAATG-ATACACGATA-TGAAGCTTTGGTTTCGTAAGAAATGCTTTCTTCCCACCAATTT
* * * * *
567281 TG-GTAAAGTCTACGTTCATGCCTCAAATGTGCCAAACGTGGATTCTAGTAATGATCTTCATTCA
452 TGAG-AAAGTCTACATTCATACCTCAAATGTGACAAACATGGATTCTAGTAATGATCATCATTCA
* *
567345 CATTGTGATTAGGCAGTATAAACTTATTCT
516 CATTGTGATTAGGCACTATAAACATATTCT
567375 CCTCCTTGGG
Statistics
Matches: 481, Mismatches: 57, Indels: 12
0.87 0.10 0.02
Matches are distributed among these distances:
554 3 0.01
555 205 0.43
556 149 0.31
557 124 0.26
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (557 bp):
AAATATGACAAACATGGATTCCAGTAATGATCATCTATCACTTTGTGATCAGGCACTATAAACAA
AGTCTCCGCATTAGGATAAATGATATGAATGATTTTCTTTTGCATGAAAACCTTTTCTTTGCCAT
ATTTTCTTTAGAATCAAAGTTCATTCCTTAAATAAGACAAGCATTGATTCTCATAACAAGCTCCA
CTCTTTTCGAGATTGAGAACCAAAAACACATTCCTTTCAATAGGATACGCGACATTGAAGCTTTA
ATGTCGCAAGAAAAGCATTTCTTCCAACCGATTTTAATAGAACTAAAGTTTGTCTCATAAATAAG
ACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTC
TCATAATGATACACGATATGAAGCTTTGGTTTCGTAAGAAATGCTTTCTTCCCACCAATTTTGAG
AAAGTCTACATTCATACCTCAAATGTGACAAACATGGATTCTAGTAATGATCATCATTCACATTG
TGATTAGGCACTATAAACATATTCTTTTCATTAGGAT
Found at i:567903 original size:476 final size:473
Alignment explanation
Indices: 566832--568198 Score: 1884
Period size: 476 Copynumber: 2.9 Consensus size: 473
566822 TCATTAGGAT
* * * * * **
566832 AAATATGACAAACATGGATTCTAGTAATGATCATCATTTACTTTGTGATCAGGCACTATAAACAA
1 AAATGTGACAAACATGGATTCTAGTAATGATCATTATTCACTTTGTGATTAGGCAGTATAAACTT
* ** *
566897 AGTCTCCTTATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTT
66 ATTCTCCTCCTTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCAT
* * * **
566962 ATTTTCTTTAGAA-CAAAGTTCATTCCTTAAATAAGACAAGCATTGATTCTCGTAACAGGCTCCA
131 ATTTTCTTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCA
**
567026 CTCTTTTCGAGATTTAGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGAAGCTTTA
196 CTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTG--GCTTTA
* *
567091 ATGTCGCATGAAAGGCATTTCTTCCAACC-ATTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
259 ATGTCGCATGAAAGGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
*
567155 ACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGTTTAGGCACCATAAACTTAGTCTTC
324 ACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTC
* * * * *
567220 TCATAAGTATACACGATATTGAAGGTTTGGTTTCGTAAGAAAGCTTTCTTCCCACTAATTTTGGT
389 TCATAAGCATACACGATATTGATGCTTTGGTTTCATAAGAAAGCTTTCTTCCCACCAATTTTGGT
567285 AAAGTCTACGTTCATGCCTC
454 AAAGTCTACGTTCATGCCTC
* * *
567305 AAATGTGCCAAACGTGGATTCTAGTAATGATC-TTCATTCACATTGTGATTAGGCAGTATAAACT
1 AAATGTGACAAACATGGATTCTAGTAATGATCATT-ATTCACTTTGTGATTAGGCAGTATAAACT
* * * * *
567369 TATTCTCCTCCTTGGGATAAATGATGTGGATGATTTTCTTTTGTACGGAAATCTTTTCTTTGCCC
65 TATTCTCCTCCTTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCA
* * * * * * *
567434 TATTTTCCTTACAATCGAAGTTCATTCCTTAAATAAGGCAAGTACTGATTTTCATTACAATCTCC
130 TATTTTCTTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCC
** * * *
567499 ACTCTTTTCGAGATTGGGAATGAAAAACACATTCTTTTCAATAGGATATGCGACATTGGCATTTT
195 ACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGGC--TTT
* * * * *
567564 AATGTCGTAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGCACCAAAGTTTGTCTCTTAAATAA
258 AATGTCGCATGAAAGGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * * * *
567629 GACAAAAATGAATAGTCATACTAATCCTTATTCTTTTTTGGATTAGCCACCATAAACTTAGTCTT
323 GACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTT
*
567694 CTCATAATG-ATACACGATATTGATGCTTTGGTTTTATAAGAAATGCTTTCTTCCCACCAATTTT
388 CTCATAA-GCATACACGATATTGATGCTTTGGTTTCATAAGAAA-GCTTTCTTCCCACCAATTTT
* **
567758 GGTAGAGTCTACGTTTGTGCCTC
451 GGTAAAGTCTACGTTCATGCCTC
* *
567781 AAATGTGACAAACATGGATTCTAGTAGTGATCATTAATCACTTTGTGATTAGGCAGTATAAACTT
1 AAATGTGACAAACATGGATTCTAGTAATGATCATTATTCACTTTGTGATTAGGCAGTATAAACTT
* * * *
567846 ATTCT-CTGCCTTATGATAAATGATATGAATGATTTTCTTTTGCATGAAAACCTTTTCTTTGCCA
66 ATTCTCCT-CCTTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCA
*
567910 TATTTTCTTTAAAATCAAAGTTCATTCCTTAAATGAGGCAAGCATTGATTCTCATAACAATCTCC
130 TATTTTCTTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCC
*
567975 GCTCTTGTT-GAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGACGCTT
195 ACTCTT-TTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTG--GCTT
* ** * *
568039 TAATGTCGCATGAAAGGCATTT-GTTCAAATTGTTTTCGATAGAATCAAAGTTTGCCTCTTAAAT
257 TAATGTCGCATGAAAGGCATTTCTTTC-AACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * *
568103 AAGACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAATCTCATTC
321 AAGACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTC
*
568168 TTCTCATAAGCATATACGATATTGATGCTTT
386 TTCTCATAAGCATACACGATATTGATGCTTT
568199 AATGTCGCAA
Statistics
Matches: 776, Mismatches: 104, Indels: 25
0.86 0.11 0.03
Matches are distributed among these distances:
472 3 0.00
473 121 0.16
474 121 0.16
475 133 0.17
476 392 0.51
477 4 0.01
478 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (473 bp):
AAATGTGACAAACATGGATTCTAGTAATGATCATTATTCACTTTGTGATTAGGCAGTATAAACTT
ATTCTCCTCCTTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCAT
ATTTTCTTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCA
CTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGGCTTTAAT
GTCGCATGAAAGGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
AAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTC
ATAAGCATACACGATATTGATGCTTTGGTTTCATAAGAAAGCTTTCTTCCCACCAATTTTGGTAA
AGTCTACGTTCATGCCTC
Found at i:570475 original size:474 final size:475
Alignment explanation
Indices: 568817--570998 Score: 2675
Period size: 474 Copynumber: 4.6 Consensus size: 475
568807 TTTTCATCAA
* * * * * *
568817 TAGTTTTCCCATAAGGATACACGATATTGATGGTTTGGTTTTGTAAGAAA-GCTTCCTTCCCACC
1 TAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACC
* * * * ** * * * *
568881 AATTTTGGTAAAATCTATGTTCGCGCCTCAAAAGTGCCAAACATAGATTCTAGCAATGATCTTCA
66 AATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTATTGATCTTCA
** * * * * * * *
568946 TTCACGTTGTGATTAGGTAGTATAAACTTGTTCTCCTCCTTACGATAAATGATATGGATGAATTT
131 TTCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATGGATGATTTT
569011 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAG
196 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAG
* * * ** *
569076 GTAAGCATTGATTCTTGTAACAGTCTCCACTCTTTTTGATATTGGGAACGAAAAACACATTCCTT
261 GCAAGCATTGATTCTCGTAACAGTCTCCACCCTTTTCAAGATTGGGAAC-AAAAACACATTCCTT
* * *
569141 TCATTAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCATTTC-TTCTAACCGTTTTG
325 TCATTAGGATACACGACATTGACGCTTTGGTGTCGCAAGAAAAGCATTTCTTTC-AACCGTTTTT
* *
569205 GACAGAATCAAAGTTTGTC-CTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTT
389 GACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTT
**
569269 TTTCGATTAGGCACCATAAACT
454 TTAGGATTAGGCACCATAAACT
* * * * * *
569291 TAGTCTTCTCATATGGATACACGATATTGATGGTTTGGTTTCGTTAGAAA-GCTTTTTTCCCAGC
1 TAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACC
** * * * *
569355 AATTTCGGTAAAGTCTAAGTTCGTGCCTCAATTGGGACAAATATGGATTCTAGTAATGGTCTTCA
66 AATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTATTGATCTTCA
* * * * * *
569420 TTCATTTTGTGATTAGCCACTATAATCGTATTCTTCTCATTAGGATAAATGATGTTGATGATTTT
131 TTCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATGGATGATTTT
** * * *
569485 CTTTTGTGTGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAATTTAATTCCTTAAATAA-
196 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAG
* *
569549 GCAAGCAATGATTCTCATAACAGTCTCC-CCTCTTTTCAAGATTGGGAACAAAAACACATTCCTT
261 GCAAGCATTGATTCTCGTAACAGTCTCCACC-CTTTTCAAGATTGGGAACAAAAACACATTCCTT
* * * * *
569613 CCATTAGGATATATGACATTGATGCTTTGGTGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTG
325 TCATTAGGATACACGACATTGACGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTG
* * * ** * *
569678 ATAGAATGAAAGTTTATCTCTTAAATAAGATTAATATGAATAGTCATACTAATCCTTATT-TTTT
390 ACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTT
* *
569742 TAGGATTAGGCACTAGAAACT
455 TAGGATTAGGCACCATAAACT
* *
569763 TAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGCTTCGCAAGAAAGGCTTTCTT-CCACC
1 TAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACC
* * * * *
569827 AATTTTTGCAAAGTCTAAGTTTGTGCCTCAATTATGACAAACATGGATTCCAGTATAGAT-TTCC
66 AATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTATTGATCTT-C
* * * * * *
569891 ATTAATTTTCTGATTAGTCACTATAAAAACATTCTCCTCATTAGGATAAATGGTATGGATGATTT
130 ATTCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATGGATGATTT
* * **
569956 TCTTTTGCATCGAAATCGTTTCTTTGCTGTATTTTCCTTAAAATCAAAGTT-ATTCCTTAAATAA
195 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAA
* * * *
570020 GGTAGGCATTTATTCTTGTAACAGTCTCCACCCTTTTCAAGATTGGGAACTAAAAACACATT-CT
260 GGCAAGCATTGATTCTCGTAACAGTCTCCACCCTTTTCAAGATTGGGAAC-AAAAACACATTCCT
* * * * * * * *
570084 TTCATTAGTATATATGACATTGATGCTTTGGTGTCACAAGAAAAGCATTTTTTTCAACCATTTTC
324 TTCATTAGGATACACGACATTGACGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTT
* * * *
570149 GATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAATAGTGATACTAATCCTCATTCATT
389 GACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTT
* **
570214 TTAGGATTACGCACCACCAACT
454 TTAGGATTAGGCACCATAAACT
* * * * *
570236 TATTCTTCTCAGAAAGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACC
1 TAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACC
* * * *
570301 AATTTTTGTAAAGTCTAAGTTCATGGCTGAATTGTGGCAAACATGGATTCTAGTATTGATCTTCA
66 AATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTATTGATCTTCA
* *
570366 TTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATGATATGGATGATTTT
131 TTCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATGGATGATTTT
* * * * *
570431 CTTTTGCATGAAAATCTTTTCTTTTCCCTATTTTTCTTAAAATCAATGTTCATCCCTT-AATAAG
196 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAG
* ** * *
570495 GCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGTTTGGGAACCAAAAACACATTCCTT
261 GCAAGCATTGATTCTCGTAACAGTCTCCACCCTTTTCAAGATTGGGAA-CAAAAACACATTCCTT
* * * *
570560 TCATTAGGATACACGACATTGACGCTTTTGAGTCGCAAGGAAAGCATTTCTTTCAACCTTTTTTG
325 TCATTAGGATACACGACATTGACGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTG
* * *
570625 ACAGAATCAAAGTTTGTCTCTTAAATAAGACAAATATGAATACTCATACTAATCCCCATTCTTTT
390 ACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTT
*
570690 TAGGATTAGGCACCATAAACC
455 TAGGATTAGGCACCATAAACT
* * * * * * * *
570711 AAGTCTTCTAATAAGGATGCACT-ATACTGAAG-ATTGGTTTCATAAGAAAGGCTTTCTTGCCAC
1 TAGTCTTCTCATAAGGATACA-TGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCAC
* * * *
570774 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGGTTCTATTATAGATCTTC
65 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTATTGATCTTC
* * * * * * *
570839 ATTCATTTTGTGATTAGTCACTATAAAAACAATCTCTTCATTGGGATAAATGATATGGATGATGT
130 ATTCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATGGATGATTT
* * ** * * *
570904 TCTTTCGCATGGAAATCTTTTATTCACCCAATTTCCCTTAAAATCAATGTTCA-TCTCTTAAATA
195 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTC-CTTAAATA
570968 AGGCAAGCATTGATTCTCGTAACAGTCTCCA
259 AGGCAAGCATTGATTCTCGTAACAGTCTCCA
570999 TTCTCTTTAT
Statistics
Matches: 1458, Mismatches: 233, Indels: 33
0.85 0.14 0.02
Matches are distributed among these distances:
471 15 0.01
472 455 0.31
473 171 0.12
474 619 0.42
475 197 0.14
476 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (475 bp):
TAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACC
AATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTATTGATCTTCA
TTCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATGGATGATTTT
CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAG
GCAAGCATTGATTCTCGTAACAGTCTCCACCCTTTTCAAGATTGGGAACAAAAACACATTCCTTT
CATTAGGATACACGACATTGACGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGA
CAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTT
AGGATTAGGCACCATAAACT
Found at i:571271 original size:291 final size:290
Alignment explanation
Indices: 570747--571314 Score: 707
Period size: 291 Copynumber: 2.0 Consensus size: 290
570737 CTGAAGATTG
* * * **
570747 GTTTCATAAGAAAGGCTTTCTTGCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGA
1 GTTTCATAAAAAAAGCTTTCTTCCCACCAATTTCGGTAAAGTCTAAGTTCGTGCCTCAAATGTGA
* * ** * *
570812 CAAACATGGGTTCTATTATAGATCTTCATTCATTTTGTGATTAGTCACTATAAAAACAATCTCTT
66 CAAACATAGATTCTACAATAGATCCTCATTCATTTTGTGATTAGGCACTATAAAAACAATCTCTT
* *
570877 CATTGGGATAAATGATATGGATGATGTTCTTTCGCATGGAAATCTTTTATTCACCCAATTTCCCT
131 CATTAGGATAAATGATATGGATGATGTTCTTTCACATGGAAATCTTTTATTCACCCAATTTCCCT
* * * * * * *
570942 TAAAATCAATGTTCATCTCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTCTTT
196 TAAAATCAAAGTTAATCTCTTAAATAAGGCAAGCATTGATACTCATAAAAATCTCCACTCT-TTT
571007 -ATGATTGGGAACCAAAAGCATTGATGCTTTT
260 CA-GATTGGGAACCAAAAGCATTGATGCTTTT
*
571038 GTTTCATAAAAAAAGCTTTCTTCCCACCAATTTCGGTAAAGTCTAAGTTCGTGCCTCAATTGTGA
1 GTTTCATAAAAAAAGCTTTCTTCCCACCAATTTCGGTAAAGTCTAAGTTCGTGCCTCAAATGTGA
* * * *
571103 CAAACATAGATTCTAGCAAT-GGTCCTCATTCATTTTGTGATTAGGCA-T-TATAAACGTATTTC
66 CAAACATAGATTCTA-CAATAGATCCTCATTCATTTTGTGATTAGGCACTATAAAAAC-AATCTC
* * * * * * ** *
571165 TTTTATTAGGTTAAATGATATTGATGATTTTCTTTTACATGGAAATCTTTTCTTTGCCCTACTTT
129 -TTCATTAGGATAAATGATATGGATGATGTTCTTTCACATGGAAATCTTTTATTCACCC-AATTT
*
571230 -CCTTAAAATCAAAGTTAAT-TCCTTAAATAAGGTAAGCATTGATACTCATAAAAATCTCCACTC
192 CCCTTAAAATCAAAGTTAATCT-CTTAAATAAGGCAAGCATTGATACTCATAAAAATCTCCACTC
571293 TTTTCGAGATTGGGAACCAAAA
256 TTTTC-AGATTGGGAACCAAAA
571315 ACACATTCCT
Statistics
Matches: 235, Mismatches: 35, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
289 6 0.03
290 9 0.04
291 213 0.91
292 7 0.03
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (290 bp):
GTTTCATAAAAAAAGCTTTCTTCCCACCAATTTCGGTAAAGTCTAAGTTCGTGCCTCAAATGTGA
CAAACATAGATTCTACAATAGATCCTCATTCATTTTGTGATTAGGCACTATAAAAACAATCTCTT
CATTAGGATAAATGATATGGATGATGTTCTTTCACATGGAAATCTTTTATTCACCCAATTTCCCT
TAAAATCAAAGTTAATCTCTTAAATAAGGCAAGCATTGATACTCATAAAAATCTCCACTCTTTTC
AGATTGGGAACCAAAAGCATTGATGCTTTT
Found at i:571732 original size:766 final size:765
Alignment explanation
Indices: 570287--571789 Score: 2041
Period size: 766 Copynumber: 2.0 Consensus size: 765
570277 TGCAAGAAAG
** * * * *
570287 GCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGGCTGAATTGTGGCAAACATGGATTCT
1 GCTTTCTTCCCACCAATTTCGGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACATAGATTCT
* * * *
570352 AGTATTGATCTTCATTCACTTTGTGATTAGGCACTATAAACTTATTCTCCTCATTAGGATAAATG
66 AGCAATGATCCTCATTCACTTTGTGATTAGGCACTATAAACGTATTCTCCTCATTAGGATAAATG
* * * * * *
570417 ATATGGATGATTTTCTTTTGCATGAAAATCTTTTCTTTTCCCTATTTTTCTTAAAATCAATGTTC
131 ATATGGATGATTTTCTTTTACATGAAAATCTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGTTA
* * * * *
570482 ATCCCTTAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGTTTGGGAACCAA
196 ATCCCTTAATAAGGCAAGCATTGATACTCATAAAAATCTCCACTCTTTTCATGATTGGGAACCAA
* * * *
570547 AAACACATTCCTTTCATTAGGATACACGACATTGACGCTTTTGAGTCGCAAGGAAAGCATTTCTT
261 AAACACATTCCTTACAATAGGATACACGACATTGACGCTTTTAAGTCGCAAGAAAAGCATTTCTT
* * * * * *
570612 TCAACCTTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAATATGAATACTCATACTAA
326 TCAACCGTTTTTGACAGAATCAAACTTTATCTCTTAAATAAGACAAACATGAATACTCACACAAA
* * * *
570677 TCCCCATTCTTTTTAGGATTAGGCACCATAAACCAAGTCTTCTAATAAGGATGCACTATACTGAA
391 TCACCATTCTTTTTAGGATTAGGCACCATAAACCAAGTCTTCTAATAAGCATACACGATACTGAA
* * *
570742 GATTGGTTTCATAAGAAAGGCTTTCTTGCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
456 GATTGGTTTCATAAGAAACGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAAA
* * * * ** * *
570807 TGTGACAAACATGGGTTCTATTATAGATCTTCATTCATTTTGTGATTAGTCACTATAAAAACAAT
521 TGTGACAAACATGGATTCTAGTAAAGACCTTCATTCACATTGTGATTAGGCAATATAAAAACAAT
* * *
570872 CTCTTCATTGGGATAAATGATATGGATGATGTTCTTTCGCATGGAAATCTTTTATTCACCCAATT
586 CTCCTCATTAGGATAAATGATATGGATGATGTTCTTTCGCATGGAAATATTTTATTCACCCAATT
* * *
570937 TCCCTTAAAATCAATGTTCATCTCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTC
651 TCCCTTAAAATCAAAGTTCATCTCTTAAATAAGGCAAGCATTCATTCTCGTAACAGTCTCCACTC
* *
571002 TCTTT-ATGATTGGGAACCAAAAGCATTGATGCTTTTGTTTCATAAAAAAA
716 T-TTTCAAGATTGGGAACAAAAAGCATTGATGCTTTTGTTTCATAAAAAAA
*
571052 GCTTTCTTCCCACCAATTTCGGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATAGATTCT
1 GCTTTCTTCCCACCAATTTCGGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACATAGATTCT
* * * * * *
571117 AGCAATGGTCCTCATTCATTTTGTGATTAGGCATTATAAACGTATT-TCTTTTATTAGGTTAAAT
66 AGCAATGATCCTCATTCACTTTGTGATTAGGCACTATAAACGTATTCTC-CTCATTAGGATAAAT
* *
571181 GATATTGATGATTTTCTTTTACATGGAAATCTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGTT
130 GATATGGATGATTTTCTTTTACATGAAAATCTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGTT
* *
571246 AATTCCTTAAATAAGGTAAGCATTGATACTCATAAAAATCTCCACTCTTTTCGA-GATTGGGAAC
195 AATCCCTT-AATAAGGCAAGCATTGATACTCATAAAAATCTCCACTCTTTTC-ATGATTGGGAAC
* *
571310 CAAAAACACATTCCTTACAATGGGATACGCGACATTGACGC-TTTAATGTCGCAAGAAAAGCATT
258 CAAAAACACATTCCTTACAATAGGATACACGACATTGACGCTTTTAA-GTCGCAAGAAAAGCATT
* *
571374 TCTTTCAACCGTTTTTGATAGAATCAAACTTTATCTCTTAAATAAGACAAACATGAATAGTCACA
322 TCTTTCAACCGTTTTTGACAGAATCAAACTTTATCTCTTAAATAAGACAAACATGAATACTCACA
* * ** * *
571439 CAAATCATCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGCATACACGATAT
387 CAAATCACCATTCTTTTTAGGATTAGGCACCATAAACCAAGTCTTCTAATAAGCATACACGATAC
* * *
571504 TGATGGTTTGGTTTCATAAG-AACGCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTCGTGCC
452 TGA-AGATTGGTTTCATAAGAAACGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCC
* * *
571568 TCAAATGTGCCACACATGGATTCTAGTAAAGACCTTCATTCACATTGTGATTAGGCAATATAAAC
516 TCAAATGTGACAAACATGGATTCTAGTAAAGACCTTCATTCACATTGTGATTAGGCAATATAAAA
** * * * * *
571633 TTATTCTCCTCCTTAGGATAAATGATATGGATGATTTTCTTTTC-CATGGAAATATTTTCTAT-G
581 ACAATCTCCTCATTAGGATAAATGATATGGATGATGTTC-TTTCGCATGGAAATATTTTAT-TCA
* * * *
571696 CCCTATTTTCCTTAAAATCAAAGTTCAT-TCCTTAAATAAGGCAAGCATTCATTCTTGTAGCAGT
644 CCCAATTTCCCTTAAAATCAAAGTTCATCT-CTTAAATAAGGCAAGCATTCATTCTCGTAACAGT
571760 CTCCACTCTTTTCAAGATTGGGAACAAAAA
708 CTCCACTCTTTTCAAGATTGGGAACAAAAA
571790 ACACATTCCT
Statistics
Matches: 637, Mismatches: 92, Indels: 17
0.85 0.12 0.02
Matches are distributed among these distances:
764 2 0.00
765 181 0.28
766 434 0.68
767 20 0.03
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (765 bp):
GCTTTCTTCCCACCAATTTCGGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACATAGATTCT
AGCAATGATCCTCATTCACTTTGTGATTAGGCACTATAAACGTATTCTCCTCATTAGGATAAATG
ATATGGATGATTTTCTTTTACATGAAAATCTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGTTA
ATCCCTTAATAAGGCAAGCATTGATACTCATAAAAATCTCCACTCTTTTCATGATTGGGAACCAA
AAACACATTCCTTACAATAGGATACACGACATTGACGCTTTTAAGTCGCAAGAAAAGCATTTCTT
TCAACCGTTTTTGACAGAATCAAACTTTATCTCTTAAATAAGACAAACATGAATACTCACACAAA
TCACCATTCTTTTTAGGATTAGGCACCATAAACCAAGTCTTCTAATAAGCATACACGATACTGAA
GATTGGTTTCATAAGAAACGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAAA
TGTGACAAACATGGATTCTAGTAAAGACCTTCATTCACATTGTGATTAGGCAATATAAAAACAAT
CTCCTCATTAGGATAAATGATATGGATGATGTTCTTTCGCATGGAAATATTTTATTCACCCAATT
TCCCTTAAAATCAAAGTTCATCTCTTAAATAAGGCAAGCATTCATTCTCGTAACAGTCTCCACTC
TTTTCAAGATTGGGAACAAAAAGCATTGATGCTTTTGTTTCATAAAAAAA
Found at i:573383 original size:949 final size:947
Alignment explanation
Indices: 571026--575364 Score: 5974
Period size: 949 Copynumber: 4.6 Consensus size: 947
571016 AACCAAAAGC
* * * * * *
571026 ATTGATGCTTTTGTTTCATAAAAAAAGCTTTCTTCCCACCAATTTCGGTAAAGTCTAAGTTCGTG
1 ATTGATGGTTTGGTTTCGT-AAGAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTG
* * * * * * ** *
571091 CCTCAATTGTGACAAACATAGATTCTAGCAATGGTCCTCATTCATTTTGTGATTAGGCATTATAA
65 CCTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAA
* * * * *
571156 ACGTATTTCTTTTATTAGGTTAAATGATATTGATGATTTTCTTTTACATGGAAATCTTTTCTTTG
130 ACTTA-TTCTCTTATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
* * * * *
571221 CCCTACTTTCCTTAAAATCAAAGTTAATTCCTTAAATAAGGTAAGCATTGATACTCATAAAAATC
194 CCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATC
* * *
571286 TCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTACAATGGGATACGCGACATTGACGC
259 TCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGACGC
* * *
571351 TTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAACTTTATCTCTTAAA
324 TTTAATGTCACAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
*
571416 TAAGACAAACATGAATAGTCACACAAATCATCATTCTTTTTTGGATTAGGCACCATAAACTTAGT
389 TAAGACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGT
* *
571481 CTTCTCATAAGCATACACGATATTGATGGTTTGGTTTCATAAGAACGCTTTCTTCCCACCAATTT
454 CTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCATAAGAAGGCTTTCTTCCCACCAATTT
* * * * *
571546 TGGTAAAGTCTACGTTCGTGCCTCAAATGTGCCACACATGGATTCTAGTAAAGACCTTCATTCAC
519 TGGTAAAGTCTAAGTTCGTGCCTCAAATGTG-CAAACATGGATTCTAATATAGATCTTCATTCAC
* * *
571611 ATTGTGATTAGGCA-ATATAAACTTATTCTCCTCCTTAGGATAAATGATATGGATGATTTTCTTT
583 TTTGTGATTAGGCATATAAAAAC--ATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTT
* * *
571675 TCCATGGAAATATTTTCTATGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAA
646 TGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAA
* ** * * *
571740 GCATTCATTCTTGTAGCAGTCTCCACTCTTTTCAAGATTGGGAACAAAAAACACATTCCTTTCAA
711 GCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTGGGAACAAAAAACACATTCCTTTCAA
** * *
571805 TAGGATACGCGGCATTGATGCTTTAATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAG
776 TAGGATACATGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAG
* *
571870 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGG
841 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGG
* * *
571935 ATTAGGCACTATAAACTTAGTCTTCTCATAAGGATACACAAT
906 ATTAGGCACCATAAACTTAGTCTTCTCAAAAGCATACACAAT
*
571977 ATTGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTG
1 ATTGATGGTTTGGTTTCGT-AAGAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTG
*
572042 CCTCAAATATGCCAAACATGGATTCTAGTAATGATCTTCATTCACG-T-TG--T-----G-ATAA
65 CCTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAA
** * * *
572097 ACTTATTCTCCTCGTTAGGTTAAATGATATGGATGATTTCCTTTTTCATGGAAATCTTTTCTTTG
130 ACTTATTCT-CTTATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
* * *
572162 CCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTC
194 CCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATC
* * ** *
572227 TCCAATCTTTTC-ATGATTGGGAACCAAAAACACATTCGTTTCATTAGGATACATGACATTGATG
259 TCCACTCTTTTCGA-GATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGACG
*** * * **
572291 CTTTGGGGTCGCAAGAAAAGCATTTCTTTCAACCATTTTTGACGGAATCAAAGTTTGTCTCTTAA
323 CTTTAATGTCACAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * * * * **
572356 ATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGGACCATAAACCAAG
388 ATAAGACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAG
* * * * * * ** * *
572421 TCTCCTAATAAGGATATATGATACTGAAGCATTGGTTTCATAAGACAGGCTTTCTTGCCACTAAT
453 TCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCATAAGA-AGGCTTTCTTCCCACCAAT
* * * *
572486 TTTTGTAAAGTCTAAGTTCGTACCTCAAATGTGACAAACATGGGTTCTAATATAGATCTTCATTA
517 TTTGGTAAAGTCTAAGTTCGTGCCTCAAATGTG-CAAACATGGATTCTAATATAGATCTTCATTC
* * * * * *
572551 ATTTTGTGATTAGTCATTGTAAAAACATTCTCCTCATTAGAACAAATGATATGGATGATGTTCTT
581 ACTTTGTGATTAGGCA-TATAAAAACATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTT
* * *
572616 TTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAATGTTCATCCCTTAAATAAGGCA
645 TTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCA
* *
572681 AGCATTGATTCTCATAACAATCTCCACTCTTTTCGGGATTGGGAACCAAAAACACATTCCTTTCA
710 AGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTGGGAACAAAAAACACATTCCTTTCA
* *
572746 TTAGGATACATGACATTGACGCTTTAATGTCGCAAGAAAAGCATTT-TTTCAACCGTTTTTGATA
775 ATAGGATACATGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATA
* *
572810 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACAAATCCTCATACTCTTTTG
840 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTG
* * *
572875 GATTAGGCACCATCAACTTAGACTTCTCAAAAGCATACACGAT
905 GATTAGGCACCATAAACTTAGTCTTCTCAAAAGCATACACAAT
* *
572918 ATTGATGGTTTGGTTTCGTAAGAAAGCTTTCTTCCCACCAATTTCGGTAAAGTCTATGTTCATGC
1 ATTGATGGTTTGGTTTCGTAAGAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
* * *
572983 CTCAAATGTGCTAAACATGGATTCTAGTAATGATCTTCAATCACGTTGTGACTAGGCAGTATAAA
66 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAA
*
573048 CTTATTCTCTTATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAGTCTTTTCTTTGCC
131 CTTATTCTCTTATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* *
573113 CTATTTTCCTTAAAATCAAAGTTCATTCTTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTC
196 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
*
573178 CACTCTTCTT-GAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGACACT
261 CACTCTT-TTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGACGCT
* * * * * * *
573242 ATAATCTCACATGAAAATCATTTCTTTGAACCGTTTTTTATAGAATCAAAGTTTATCTCTTAAAT
325 TTAATGTCACAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * *
573307 AAGGCAAAGATGAATAGTCACAAAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTC
390 AAGACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTC
* ** *
573372 GTCTCATAAGGATACACGATATTGATGGTTTGGTTTGGTAAGAAAGGCTTTATTCCCACCAATTT
455 TTCTCATAAGGATACACGATATTGATGGTTTGGTTTCATAAG-AAGGCTTTCTTCCCACCAATTT
** * *
573437 TGGTAAAGTCTAAGTTCGTGCCTCAACTATG-GCAAACATGCTTTGTAGCA-AT-GATTTTCATT
519 TGGTAAAGTCTAAGTTCGTGCCTCAA--ATGTGCAAACATGGATTCTA--ATATAGATCTTCATT
* * * * * * *
573499 TACTTTGTGATAAGGCGCTACAAACAA-AGTCTCCTTATTAGGATAAATGATATGGATGATTTCC
580 CACTTTGTGATTAGGC-ATATAAA-AACATTCTCCTCATTAGGATAAATGATATGGATGATTTTC
*
573563 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGG
643 TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGG
* *
573628 CAAGCATTGATTCTCATAACAATCTCTACTCTTTTCGAGATTAGGAACAAAAAACACATTCCTTT
708 CAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTGGGAACAAAAAACACATTCCTTT
* ** * *
573693 TAATAACATACATGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTCA
773 CAATAGGATACATGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGA
*
573758 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-AAGTAGTCACACAAATTCTCATTCTTTT
838 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA-TAGTCACACAAATCCTCATTCTTTT
* * *
573822 TTGGATTAGGCACCATAAAACTTAGTCTTCTCATAAGCTTACACGAT
902 TTGGATTAGGCACCAT-AAACTTAGTCTTCTCAAAAGCATACACAAT
*
573869 ATTGATGGTTTGGTTTCGTAAG-AA-CTTTCTTCCCACCAATTTTGGTAAAGCCTATGTTCGTGC
1 ATTGATGGTTTGGTTTCGTAAGAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
* **
573932 CTCAAATGTTCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGTGGTATAAA
66 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAA
** *
573997 CTTATTCTCCTCCTTAGGATAAATGATATGGGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
131 CTTATTCT-CTTATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
** *
574062 CCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTCT
195 CCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCT
* * * *
574127 CCACTCTTTTCGAGATTGGGAACAAAAAACACATTCCTTTCAATAGGATACACGACATTGACACT
260 CCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGACGCT
* * *
574192 TTAATGTCAC-AGTAAAAGCATTTATTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTCAAA
325 TTAATGTCACAAG-AAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * * * *
574256 TAAGACAGACAT-TATTGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACGATAAACTTAGT
389 TAAGACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGT
** * * * *
574320 CTTCTCATAAGGATACACGATATTGATGGTTTGGTTTTGTAAAAAATGCTTTCTTGCCACCAACT
454 CTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCAT-AAGAAGGCTTTCTTCCCACCAATT
* * * *
574385 TTGGTAAAGTCTATGTTCGTGCCTCGAAA-GTGCAAAACATGGATTCTAGTA-ATGATCTTGAAT
518 TTGGTAAAGTCTAAGTTCGTGCCTC-AAATGTGC-AAACATGGATTCTAATATA-GATCTTCATT
* * *** * *
574448 CACGTTGTGATTAGGTAGTATAAACTTATTCTTCTCCTTAGGATAAATGATATGGATGATTTTCT
580 CACTTTGTGATTAGGCA-TATAAAAACATTCTCCTCATTAGGATAAATGATATGGATGATTTTCT
* * *
574513 TTTGCATGGAAATCCTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCAATCCTTAAATAAGGC
644 TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGC
* * * * * ** *
574578 AAGCGTTGATTCTCGTAACAGTCTCCACTCTTTTTGAGCTTGGGAATGAAAAACACAATCCTTTC
709 AAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTGGGAACAAAAAACACATTCCTTTC
* ** * * * * *
574643 ATTAGGATATGTGACACTGATGCCTTGATGTCGCAAGAAAAGCATTTCTTCCAACCATTTTTGAT
774 AATAGGATACATGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGAT
* * * *
574708 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAGTAGTCACACTAATCTTCATTCTTTTTT
839 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACAAATCCTCATTCTTTTTT
* **
574773 CGATTAGGCACCATAAACTTAGTCTTCTCAAAAGCACGCACAAT
904 GGATTAGGCACCATAAACTTAGTCTTCTCAAAAGCATACACAAT
*
574817 ATTGATGGTTTGGTTTCGTAAGAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTCCGTGC
1 ATTGATGGTTTGGTTTCGTAAGAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
* *
574882 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTATGATTAGGCAGAATAAA
66 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAA
* *
574947 CTTATTCTCTTATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCC
131 CTTATTCTCTTATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* *
575012 CTACTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTTATAACAATCTC
196 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
* * *
575077 TACTCTTTTCGAGTTTGGGAACCAGAAACACATTCCTTTCATTAGGATACGCGACATTGACGCTT
261 CACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGACGCTT
*
575142 TAATGTCACAGGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
326 TAATGTCACAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
*
575207 AGACAAACATGAATAGTCACACAAATCATCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCT
391 AGACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCT
* *** *
575272 TCTCAAAATCCTACACGATATTGATGGTTTGGTTTCATAAGAAAGCTTTCTTCCCACCAATTTTG
456 TCTCATAAGGATACACGATATTGATGGTTTGGTTTCATAAGAAGGCTTTCTTCCCACCAATTTTG
* * *
575337 GTAAAGTCTATGTTCTTGCCTCAGATGT
521 GTAAAGTCTAAGTTCGTGCCTCAAATGT
575365 TGATGAAAAC
Statistics
Matches: 2980, Mismatches: 363, Indels: 92
0.87 0.11 0.03
Matches are distributed among these distances:
940 90 0.03
941 452 0.15
942 278 0.09
944 7 0.00
947 2 0.00
948 53 0.02
949 1409 0.47
950 540 0.18
951 149 0.05
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (947 bp):
ATTGATGGTTTGGTTTCGTAAGAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAA
CTTATTCTCTTATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
CACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGACGCTT
TAATGTCACAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
AGACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCT
TCTCATAAGGATACACGATATTGATGGTTTGGTTTCATAAGAAGGCTTTCTTCCCACCAATTTTG
GTAAAGTCTAAGTTCGTGCCTCAAATGTGCAAACATGGATTCTAATATAGATCTTCATTCACTTT
GTGATTAGGCATATAAAAACATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCAT
GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATT
GATTCTCATAACAATCTCCACTCTTTTCGAGATTGGGAACAAAAAACACATTCCTTTCAATAGGA
TACATGACATTGACGCTTTAATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCA
AAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGATTAG
GCACCATAAACTTAGTCTTCTCAAAAGCATACACAAT
Found at i:573402 original size:474 final size:475
Alignment explanation
Indices: 571026--575364 Score: 5985
Period size: 475 Copynumber: 9.2 Consensus size: 475
571016 AACCAAAAGC
* * * * * *
571026 ATTGATGCTTTTGTTTCATAAAAAAAGCTTTCTTCCCACCAATTTCGGTAAAGTCTAAGTTCGTG
1 ATTGATGGTTTGGTTTCGT-AAGAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTG
* * * * * * ** *
571091 CCTCAATTGTGACAAACATAGATTCTAGCAATGGTCCTCATTCATTTTGTGATTAGGCATTATAA
65 CCTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAA
* * * * * *
571156 ACGTATT-TCTTTTATTAGGTTAAATGATATTGATGATTTTCTTTTACATGGAAATCTTTTCTTT
130 ACTTATTCTC-CTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
* * * * *
571220 GCCCTACTTTCCTTAAAATCAAAGTTAATTCCTTAAATAAGGTAAGCATTGATACTCATAAAAAT
194 GCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAAT
* * *
571285 CTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTACAATGGGATACGCGACATTGACG
259 CTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGACG
* *
571350 CTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAACTTTATCTCTTAA
324 CTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
*
571415 ATAAGACAAACATGAATAGTCACACAAATCATCATTCTTTTTTGGATTAGGCACCATAAACTTAG
389 ATAAGACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAG
571480 TCTTCTCATAAGCATACACGAT
454 TCTTCTCATAAGCATACACGAT
* * *
571502 ATTGATGGTTTGGTTTCATAAGAACGCTTTCTTCCCACCAATTTTGGTAAAGTCTACGTTCGTGC
1 ATTGATGGTTTGGTTTCGTAAGAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
* * * * *
571567 CTCAAATGTGCCACACATGGATTCTAGTAAAGACCTTCATTCACATTGTGATTAGGCAATATAAA
66 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAA
* * * *
571632 CTTATTCTCCTCCTTAGGATAAATGATATGGATGATTTTCTTTTCCATGGAAATATTTTCTATGC
131 CTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* ** * *
571697 CCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTCATTCTTGTAGCAGTCT
196 CCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCT
* * * * *
571762 CCACTCTTTTCAAGATTGGGAACAAAAAACACATTCCTTTCAATAGGATACGCGGCATTGATGCT
261 CCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGACGCT
*
571827 TTAATGTCGCAAGAAAAGCATTTCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
326 TTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * *
571892 AAGACAAACATGAGTAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACTATAAACTTAGTC
391 AAGACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTC
* *
571957 TTCTCATAAGGATACACAAT
456 TTCTCATAAGCATACACGAT
*
571977 ATTGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTG
1 ATTGATGGTTTGGTTTCGT-AAGAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTG
*
572042 CCTCAAATATGCCAAACATGGATTCTAGTAATGATCTTCATTCACG-T-TG--T-----G-ATAA
65 CCTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAA
* * * *
572097 ACTTATTCTCCTCGTTAGGTTAAATGATATGGATGATTTCCTTTTTCATGGAAATCTTTTCTTTG
130 ACTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
* * *
572162 CCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTC
195 CCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATC
* * ** *
572227 TCCAATCTTTTC-ATGATTGGGAACCAAAAACACATTCGTTTCATTAGGATACATGACATTGATG
260 TCCACTCTTTTCGA-GATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGACG
*** * **
572291 CTTTGGGGTCGCAAGAAAAGCATTTCTTTCAACCATTTTTGACGGAATCAAAGTTTGTCTCTTAA
324 CTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * * * * **
572356 ATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGGACCATAAACCAAG
389 ATAAGACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAG
* * * * *
572421 TCTCCTAATAAGGATATATGAT
454 TCTTCTCATAAGCATACACGAT
* * ** * * * * * * *
572443 ACTGAAGCATTGGTTTCATAAGACAGGCTTTCTTGCCACTAATTTTTGTAAAGTCTAAGTTCGTA
1 ATTGATGGTTTGGTTTCGTAAGA-AAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTG
* * * * ** *
572508 CCTCAAATGTGACAAACATGGGTTCTAAT-ATAGATCTTCATTAATTTTGTGATTAGTCATTGTA
65 CCTCAAATGTGCCAAACATGGATTCTAGTAAT-GATCTTCATTCACGTTGTGATTAGGCA--GTA
* * * *
572572 AAAAC--ATTCTCCTCATTAGAACAAATGATATGGATGATGTTCTTTTGCATGGAAATCTTTTCT
127 TAAACTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCT
* * *
572635 TTGCCCTATTTTACTTAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACA
192 TTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACA
* **
572700 ATCTCCACTCTTTTCGGGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGA
257 ATCTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGA
572765 CGCTTTAATGTCGCAAGAAAAGCATTT-TTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
322 CGCTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
* * *
572829 AAATAAGACAAACATGAATAGTCACACAAATCCTCATACTCTTTTGGATTAGGCACCATCAACTT
387 AAATAAGACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTT
* *
572894 AGACTTCTCAAAAGCATACACGAT
452 AGTCTTCTCATAAGCATACACGAT
* *
572918 ATTGATGGTTTGGTTTCGTAAGAAAGCTTTCTTCCCACCAATTTCGGTAAAGTCTATGTTCATGC
1 ATTGATGGTTTGGTTTCGTAAGAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
* * *
572983 CTCAAATGTGCTAAACATGGATTCTAGTAATGATCTTCAATCACGTTGTGACTAGGCAGTATAAA
66 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAA
* *
573048 CTTATTCT-CTTATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAGTCTTTTCTTTGC
131 CTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* *
573112 CCTATTTTCCTTAAAATCAAAGTTCATTCTTTAAATAAGGCAAGCATTGATTCTCGTAACAATCT
196 CCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCT
*
573177 CCACTCTTCTT-GAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGACAC
261 CCACTCTT-TTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGACGC
* * * * * * * *
573241 TATAATCTCACATGAAAATCATTTCTTTGAACCGTTTTTTATAGAATCAAAGTTTATCTCTTAAA
325 TTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * *
573306 TAAGGCAAAGATGAATAGTCACAAAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGT
390 TAAGACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGT
* *
573371 CGTCTCATAAGGATACACGAT
455 CTTCTCATAAGCATACACGAT
* * *
573392 ATTGATGGTTTGGTTTGGTAAGAAAGGCTTTATTCCCACCAATTTTGGTAAAGTCTAAGTTCGTG
1 ATTGATGGTTTGGTTTCGTAAGAAA-GCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTG
* * * ** * * * * * * *
573457 CCTCAACTATGGCAAACATGCTTTGTAGCAATGATTTTCATTTACTTTGTGATAAGGC-GCTACA
65 CCTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAG-TATA
** * * * *
573521 AACAAAGTCTCCTTATTAGGATAAATGATATGGATGATTTCCTTTTGCATGAAAATCTTTTCTTT
129 AACTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
573586 GCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAAT
194 GCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAAT
* * * * * ** **
573651 CTCTACTCTTTTCGAGATTAGGAACAAAAAACACATTCCTTTTAATAACATACATGACATTGACG
259 CTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGACG
*
573716 CTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTCATAGAATCAAAGTTTGTCTCTTAA
324 CTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
*
573781 ATAAGACAAACAT-AAGTAGTCACACAAATTCTCATTCTTTTTTGGATTAGGCACCATAAAACTT
389 ATAAGACAAACATGAA-TAGTCACACAAATCCTCATTCTTTTTTGGATTAGGCACCAT-AAACTT
*
573845 AGTCTTCTCATAAGCTTACACGAT
452 AGTCTTCTCATAAGCATACACGAT
*
573869 ATTGATGGTTTGGTTTCGTAAG-AA-CTTTCTTCCCACCAATTTTGGTAAAGCCTATGTTCGTGC
1 ATTGATGGTTTGGTTTCGTAAGAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
* **
573932 CTCAAATGTTCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGTGGTATAAA
66 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAA
* *
573997 CTTATTCTCCTCCTTAGGATAAATGATATGGGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
131 CTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
** *
574062 CCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTCT
196 CCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCT
* * * *
574127 CCACTCTTTTCGAGATTGGGAACAAAAAACACATTCCTTTCAATAGGATACACGACATTGACACT
261 CCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGACGCT
* * * *
574192 TTAATGTCAC-AGTAAAAGCATTTATTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTCAAA
326 TTAATGTCGCAAG-AAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * * * *
574256 TAAGACAGACAT-TATTGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACGATAAACTTAGT
390 TAAGACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGT
*
574320 CTTCTCATAAGGATACACGAT
455 CTTCTCATAAGCATACACGAT
* * * *
574341 ATTGATGGTTTGGTTTTGTAAAAAATGCTTTCTTGCCACCAACTTTGGTAAAGTCTATGTTCGTG
1 ATTGATGGTTTGGTTTCGTAAGAAA-GCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTG
* * * *
574406 CCTCGAAA-GTGCAAAACATGGATTCTAGTAATGATCTTGAATCACGTTGTGATTAGGTAGTATA
65 CCTC-AAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATA
* * *
574470 AACTTATTCTTCTCCTTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCCTTTCTTT
129 AACTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
* * * * *
574535 GCCTTATTTTCCTTAAAATCAAAGTTCAATCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGT
194 GCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAAT
* * ** * * * * *
574600 CTCCACTCTTTTTGAGCTTGGGAATGAAAAACACAATCCTTTCATTAGGATATGTGACACTGATG
259 CTCCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGACG
* * * *
574665 CCTTGATGTCGCAAGAAAAGCATTTCTTCCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAA
324 CTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * * *
574730 ATAAGACAAACATTAGTAGTCACACTAATCTTCATTCTTTTTTCGATTAGGCACCATAAACTTAG
389 ATAAGACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAG
* ** *
574795 TCTTCTCAAAAGCACGCACAAT
454 TCTTCTCATAAGCATACACGAT
*
574817 ATTGATGGTTTGGTTTCGTAAGAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTCCGTGC
1 ATTGATGGTTTGGTTTCGTAAGAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
* *
574882 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTATGATTAGGCAGAATAAA
66 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAA
* * *
574947 CTTATTCT-CTTATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGC
131 CTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* *
575011 CCTACTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTTATAACAATCT
196 CCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCT
* * *
575076 CTACTCTTTTCGAGTTTGGGAACCAGAAACACATTCCTTTCATTAGGATACGCGACATTGACGCT
261 CCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGACGCT
* *
575141 TTAATGTCACAGGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
326 TTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
*
575206 AAGACAAACATGAATAGTCACACAAATCATCATTCTTTTTTGGATTAGGCACCATAAACTTAGTC
391 AAGACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTC
* * *
575271 TTCTCAAAATCCTACACGAT
456 TTCTCATAAGCATACACGAT
* *
575291 ATTGATGGTTTGGTTTCATAAGAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCTTGC
1 ATTGATGGTTTGGTTTCGTAAGAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
*
575356 CTCAGATGT
66 CTCAAATGT
575365 TGATGAAAAC
Statistics
Matches: 3405, Mismatches: 420, Indels: 78
0.87 0.11 0.02
Matches are distributed among these distances:
465 6 0.00
466 393 0.12
467 1 0.00
468 2 0.00
470 1 0.00
472 56 0.02
473 228 0.07
474 926 0.27
475 1075 0.32
476 663 0.19
477 49 0.01
478 5 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (475 bp):
ATTGATGGTTTGGTTTCGTAAGAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAA
CTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
CCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCT
CCACTCTTTTCGAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACGCGACATTGACGCT
TTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
AAGACAAACATGAATAGTCACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTC
TTCTCATAAGCATACACGAT
Found at i:577037 original size:18 final size:19
Alignment explanation
Indices: 577010--577059 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
577000 TGATAGGAGG
*
577010 AGAGACAGGAGAGAT-A-A
1 AGAGAGAGGAGAGATGACA
*
577027 TAGAGAGAGGAGGGATGACA
1 -AGAGAGAGGAGAGATGACA
577047 AGAG-GAGGAGAGA
1 AGAGAGAGGAGAGA
577060 AGAAGATGGA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 21 0.78
19 5 0.19
20 1 0.04
ACGTcount: A:0.46, C:0.04, G:0.44, T:0.06
Consensus pattern (19 bp):
AGAGAGAGGAGAGATGACA
Found at i:582731 original size:476 final size:476
Alignment explanation
Indices: 581830--646434 Score: 43428
Period size: 476 Copynumber: 136.1 Consensus size: 476
581820 TGGTTGTCAT
* * * * *
581830 CAAAAACACATTCATTTCATTAGGATAC-ATGACATTAACGCTTTGATGTCGCAAGAAAAGCATT
1 CAAAAACACATTCCTTTCAATAGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* * * * *
581894 TCTTCCAACCGATTTTGATAGAATCAAAGTTTGTCCCTTTAATAAGACAAACATGAGTAGTCACA
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
* * *
581959 CTAATCCTCATTCTATTTTGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATAT
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
* * * * * *
582024 TGATGGTTTGGTTTTGT-AAGAAAGCTTTCTTCCCACCAATTTCGATAAAGTCTCA-ATTCATGC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCT-ATGTTCGTGC
* * * ** *
582087 CTCAATTGTGACAAACATGGATTCCAGTAATTG-TCTTCATTCATTTTGTGATTAGGCACTATAA
259 CTCAAATGTGCCAAACATGGATTCTAGTAA-TGATCTTCATTCACGTTGTGATTAGGCAGTATAA
* * * * *
582151 ACGTATTTTTCTCATTAGGTTAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
323 ACTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
* * * *
582216 CCCTATTTTCCTTAAAATCAAAGTTTATTCCTTAAATAAGGTAAACATTGGTTCTCATAACAATC
388 CCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATC
* * *
582281 TCCACTCTTTTCAAGATTCGAAAC
453 TCCACTCTTTTCGAGATTGGGAAC
* * * *
582305 CGAACACACATTCCTTACAATAGGATATGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * *
582370 CTTTCAACCATTTTTGACAGAGTCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * * *
582435 AAATGCTCATTCTTTTTTGGATCAGGCACCATGAACTTAGTCTTCTCATAAGGATACACGATATT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATT
* *
582500 GATGGTTTGGTTTCGTAAAAAAAGCTTTCTTGCCACCAACTTTGGTAAAGTCTATGTTCGTGCCT
196 GATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCT
*
582565 CAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATGAACT
261 CAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAACT
* *
582630 TCTTCTCCTCCTTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
326 TATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
* * ** *
582695 TATATTCCTTAAAATCAAAGTTTATTCCCAAAATAAGGCAAGCATTGATGCTCATAACAATCTCC
391 TATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCC
* *
582760 ACTATTCTCGAGATTGGGAAC
456 ACTCTTTTCGAGATTGGGAAC
* * *
582781 CAAAAACACATTCCTTTCAATAGGATACGTGACATTAATGCTTTAATGTCGGAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * * * * *
582846 CTTTCAACCATTTTTTACAGAATCAAAGTTTATCTCTTAAATAAGACAAAAATGAGTAGTCACAC
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
*
582911 TAATCCTCATTCTTTTTTTGGATTAGGAACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
131 TAATCCTCATTC-TTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
** * * * * * *
582976 TGATCATTTAGTTTTGTAAGAAATGCTTT-TTACCCGCCAATTTTGGTAAAGTCTACGTTCGTGC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTT-CCCACCAATTTTGGTAAAGTCTATGTTCGTGC
* * * * *
583040 CTCAAATGTGACAAACATGGATTCTAGTAATGATCATCATTCACTTTATGATTAGGCACTATAAA
259 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAA
* * * * *
583105 CCTATTCT-CTTATTAGGATAAATGATATGGATGATTTGCTTTTGCACGAAAATCTTTTCTTTGC
324 CTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * * *
583169 CCTATTTTCCTTAAAATCAAAGTTCTTTCCTTAAATAAGGCTAGCATTGATTCTCGTAACAGTCT
389 CCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCT
583234 CCACTCTTTTCGAGATTGGGAAC
454 CCACTCTTTTCGAGATTGGGAAC
* * * * * * *
583257 CAAAAAGATATTCCTTTCATTAGGATACGCGACAATGATGCTTTAATGTCGCATGAAAGGC-TTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * *
583321 TTTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACCAACATTAATAGTCACA
66 CTTT-CAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
* * * * *
583386 CAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACATAGTCTTCCCAAAAGCATACACGATAT
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
*
583451 TGATGGTTTGGTTTCGT-AAGAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
583515 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
* *
583580 TTATTCTCCTCCTTAGGGTAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
325 TTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* * * * *
583645 CTATTTTCCTTAAAATCAATGTTCAGTCCCTAAAAAAGGCAAGCATTTATTCTCATAACAATCTC
390 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
* *
583710 CACTCTTCTCGAGATTGGAAAC
455 CACTCTTTTCGAGATTGGGAAC
* * *
583732 CAAAAACACATTCCTTTCAATAGGATTCGCGACATTGACGCTTTAATGTCGCAAGAAAAG-ATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
** *
583796 CTTTCAACCGTTTTTGACGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACAC
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
** * *
583861 TAATCCTCATTCTTTTTTTTAATTAGGCCCCATAAACTTAGTCTTCTCATAAGGATACAAGATAT
131 TAATCCTCATTC-TTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
* * * * * *
583926 TGATCGTTTGGTTTTGTAAGAAATGCTTT-TTACCCGCCAATTTTGGTAAAGTCTACGTTCGTGC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTT-CCCACCAATTTTGGTAAAGTCTATGTTCGTGC
* * * * * *
583990 CTCAAACGTGACAAACATGGATTCTAGTAATGATCATCATTCACTTTATGATTAGGCACTATAAA
259 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAA
* * * * *
584055 CCTATTCT-CTTATTAGGATAAATGATATGGATGATTTGCTTTTGCACGAAAATCTTTTCTTTGC
324 CTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * *
584119 CCTATTTTCCTTAAAATCAAAGTTCTTTCCTTAAATAAGGCTAGCATTGATTCTCATAACAGTCT
389 CCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCT
584184 CCACTCTTTTCGAGATTGGGAAC
454 CCACTCTTTTCGAGATTGGGAAC
* * * * * * *
584207 CAAAAAGATATTCCTTTCATTAGGATACGCGACAATGATGCTTTAATGTCGCATGAAAGGC-TTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * *
584271 TTTTCCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCACA
66 CTTT-CAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
* * * * * *
584336 CAAATCCTCATTCTTTTTTGGATTAGGCACCACAAGCTTTGTCTTCTCAAAAGCATACACGATAT
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
* * *
584401 TGATGGTTTGGTTTCGT-AAGAAAGCTTTCTTCCCACTAATTTTGGTAAAGTCTATGTTCATGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
* *
584465 TCAAATGTCCCAAACATGGATTCTAGTAGTGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
* * * *
584530 TTATTCTCCTCCTTAGGATAAATGATATGGATGATTTTATTTTGCATGGAAATATTTGCTTTGCC
325 TTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* * *
584595 CTATTTTCCTTAAAATCAAAGTTCATTCCCTAAATAAGGCAAGTATTGATTCTCATAACAACCTC
390 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
* *
584660 CACCCTTTTAGAGATTGGGAAC
455 CACTCTTTTCGAGATTGGGAAC
* * * * *
584682 CAAAAACCCCATTCCTTTCAATAGGACACGCGACATTGACGCTTTAATGTCGCAAGGAAAGCATT
1 CAAAAA-CACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATT
*
584747 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCACA
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
* * * * * *
584812 -TAAATCCTCATACTCTTTTGGATTAGGCACCATCAACTTAGTCTTCTCAAAAGCAAACACGATA
130 CT-AATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATA
* * *
584876 TTGATGGTTTGGTTTCGT-AACAAAGCTTTCTTCCCACCAATTTCGGTAAAGTCTATGTTCATGC
194 TTGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
*
584940 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCAATCACGTTGTGATTAGGCAGTATAAA
259 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAA
* *
585005 CTTATTCT-CTTATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAGTCTTTTCTTTGC
324 CTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
*
585069 CCTATTTTCCTTAAAATCAAAGTTCATTCCTT--AT-A-GCAAGCATTGATTCTCATAACAGTCT
389 CCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCT
*
585130 CCACTCTTCTT-TAGATTGGGAAC
454 CCACTCTT-TTCGAGATTGGGAAC
* * * ** * *
585153 CAAAAACACATTCCTTTCATTAGGATACGCGACATTAACACTTTAATGTCGCATGAAAATCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * * * *
585218 CTTTGAACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAAGATGAATAGTCACAA
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * *
585283 AAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCATCCCATAAGGATACACGATATT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATT
* * * * *
585348 GATGGTTTGGTTTGGTAAGAAAGGCTTTATTCCCACCAATTTTGGTAAAGTCTAAT-ATCGTGCC
196 GATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCT-ATGTTCGTGCC
* * ** * * * * * * *
585412 TCAATTGTGGCAAACATGCTTTGTAG-AATGTTTTTCATTTACTTTGTGATAAGGC-GCTACAAA
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAG-TATAAA
** * * * *
585475 CAAAGTCTCCTTATTAGGATAAATGATATGGATGATTTCCTTTTGCATGAAAATCTTTTCTTTGC
324 CTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
*
585540 CCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATACCAATCT
389 CCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCT
*
585605 CCACTCTTTTCGAGATTAGGAAC
454 CCACTCTTTTCGAGATTGGGAAC
* * * *
585628 AAAAAACACATTCCTTTTAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
*
585693 CTTTCAACCGTTTTTCATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-AAGTAGTCACA
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA-TAGTCACA
* * * * *
585757 CAAATTCTCATTCTTTTTTGGACTAGGCACCCTAAACTTAGTCTTCTCATAAGCATACACGATAT
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
* *
585822 TGATGGTTTGGTTTCGT--AAGAA-CTTTCTTCCCACCAATTTTGGTAAAGCCTATGTTCGTGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
* **
585884 TCAAATGTGCCAAGCATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGTGGTATAAAC
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
* * * *
585949 TTATTCTCCTCCTTATGATAAATGATATGGGTGATTTTCTTTTGCATGTAAATCTTTTCTTTGCC
325 TTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
** *
586014 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTC
390 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
*
586079 CACTCTTTTCGACATTGGGAAC
455 CACTCTTTTCGAGATTGGGAAC
* ** **
586101 AAAAAACACATTCCTTTCAATAGGATAC-ACGACATTGACACTTTAATGTCTTAAGAAAAGCATT
1 CAAAAACACATTCCTTTCAATAGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* * * * * *
586165 TATTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAGACATGAGTTGTCACA
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
*
586230 CTAATCCTCATTCTTTTTTGAATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
* * * *
586295 TGATGGTTTGGTTTTGTAAAAAATGCTTTCTTGCCACCAACTTTGGTAAAGTCTATGTTCGTGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
* *
586360 TCAAAAGTGCCAAACATAGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
* * *
586425 TTATTCTCCTCCTTAGGATAAATGATATGGATGATTTTCTTTTGCGTGGAAATCCTTTCTTTGCC
325 TTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* * * * *
586490 TTATTTTCCTTAAAATCAAAGTTCAATCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTC
390 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
* * *
586555 CACTCTTTTTGAGCTTGGGAAT
455 CACTCTTTTCGAGATTGGGAAC
* * * * * * *
586577 GAAAAACACAATCCTTTCATTAGGATATGCGACACTGATGCTTTGATGTCGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * * *
586642 CTTCCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAGTAGTCACAC
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * * *
586707 TAATCTTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAAAAGCATGCACGATATT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATT
* *
586772 GATGGTTTGGTTACGT-AAGAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCT
196 GATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCT
* * *
586836 CAAATGTGCCAAACATGGATTCTAGAAATGATCTTCATTCACATTGTGATTAGGCAGAATAAACT
261 CAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAACT
*
586901 TATTCT-CTTATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
326 TATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
* * * *
586965 TATTTTCCTGAAAATCAAACTTCATTCTTTAAATAAGGCAAGCATTAATTCTCATAACAATCTCC
391 TATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCC
* **
587030 ACTCTTTTTGAGATTCAGAAC
456 ACTCTTTTCGAGATTGGGAAC
*
587051 CAAAAACACATTCCTTTC-ATCAGGATACGCA-ACATTGACGCTTTAATGTCGCAAGAAAAGCAT
1 CAAAAACACATTCCTTTCAAT-AGGATACG-AGACATTGATGCTTTAATGTCGCAAGAAAAGCAT
* * *
587114 TTCTTTCAACCGTTTTTGATAGAATCAAAGTTTTTTTCTTAAATAAGACAAACATCAATAGTCAC
64 TTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCAC
*
587179 ACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATA
129 ACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATA
* *
587244 TTGATGGTTTGGTTTTGTAAAAAAAGCTTTCTTGCCACCAATTTTGGTAAAGTCTATGTTCGTGC
194 TTGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
*
587309 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATGAA
259 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAA
* * * *
587374 CTTCTTCTCCTTC-TTAGGATAAATAATATGGATGGTTTTCTTTTGCACGGAAATCTTTTCTTTG
324 CTTATTCTCC-TCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
* * **
587438 CCCTATATTCCTTAAAATCAAAGTTTATTCCCAAAATAAGGCAAGCATTGATTCTCATAACAATC
388 CCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATC
* *
587503 TCCACTCTTTTCAAGATTAGGAAC
453 TCCACTCTTTTCGAGATTGGGAAC
* * *
587527 CAAAAACCCATTCCTTTCAATAGGATAC-ACGACATTGAAGCTTTAATGTCGCAAGAAAAGTATT
1 CAAAAACACATTCCTTTCAATAGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* * * **
587591 TCTTTCAACCGTTTTTAATGGAATCAAAGTTTGTCTCATAAATAAGACAAACATGCTTAGTCACA
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
*
587656 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGAAAT
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
** * * * * *
587721 TGATCATTTGGTTTTGTAAGAAATGCTTTCTTCCCGCCAATTTTGGTAAAGTCTACGTTCGTGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
* * * * *
587786 TCAAATGTGACAAACATGGATTCTAGTAATAATCATCATTCACTTTGTGATTAGGCACTATAAAC
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
* * *
587851 TTATTCT-CTTATTAGGATAAATGATATGGATGATTTTCTTCTGCATGGAAATCTTTTCTTTACC
325 TTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* *
587915 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCTAGCATTGATTCTCATAACAGTCTC
390 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
587980 CACTCTTTTCGAGATTGGGAAC
455 CACTCTTTTCGAGATTGGGAAC
* * * * * * *
588002 CAAAAAACACATTCCTTTC-ATCAGGATACGCGACACTGATGCTTTAATGGCGTATGAAAGGCTT
1 C-AAAAACACATTCCTTTCAAT-AGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCAT
* * * *
588066 TTCTTCCAACCGTTTTTGATAGAAGCAAAGTTTGTCTCTTAAATAAGACAAGCAAGAATAGTCAC
64 TTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCAC
** *
588131 AAAAATCCTCATTCTTTTTTGGATTAGGCACCCTAAACTTAGTCTTCTCA-AAGGCATACACGAT
129 ACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGG-ATACACGAT
* * ** * * *
588195 ATTGATGATTTGGTTTTGTAGGAAAGGCATT-TTCCCACCAAATTTGGTAAAGTCTGA-GTTCGT
193 ATTGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCT-ATGTTCGT
* * * ** *
588258 ACCTC-AATAGTGACAAACATGGATTCTAGTAATGGTCTTCATTCATTTTGTGATAAGGC-GCTA
257 GCCTCAAAT-GTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAG-TA
* * * *
588321 TAAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCACGGAAATCTTTTCT
320 TAAACTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCT
* * * *
588386 TTGCCTTATTTTCCTTAAAAATCAAATTTAATTCCTTAAATAA-GCAAGCTTTGATTC-CTATAA
385 TTGCCCTATTTTCCTT-AAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTC-ATAA
* *
588449 CAGTCTCCACTCTTTTCAAGATTGGGAAC
448 CAATCTCCACTCTTTTCGAGATTGGGAAC
* * * ** ** *
588478 CAAAAACACATTCC-TTCTATTGGGATA-TATGACATTGGCGCTTTGGTGTCACAAGAAAAGCAT
1 CAAAAACACATTCCTTTC-AATAGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCAT
* * ** *
588541 TTC-TCCAACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGATTAACATGAATAGTCAT
64 TTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCAC
* * * *
588605 ACTAATCCTTATT-TTTTTAGGATTAGGCACCAGAAACTTAGTCTTCTCATAAGGATACATGATA
129 ACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATA
* * * * * * * * *
588669 TTGATGCTTTAGCTTCGCAAGAAAGGCTTTCTT-CCACCAATTTTTGTAAACTCTAAGTTCGTGC
194 TTGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
* * ** * *
588733 CTCAATTGTGACAAACATGGATTCTAGT-ATAGAT-TTCCATTCATTTTGTGATTAGTCACTATA
259 CTCAAATGTGCCAAACATGGATTCTAGTAAT-GATCTT-CATTCACGTTGTGATTAGGCAGTATA
*** * * ** *
588796 AAAACATT-T--TCATTAGTATAAATGGTATGGATGATTTTCTTTTGCATCAAAATCGTTTCTTT
322 AACTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
** * ** *
588858 GCTGTATGTTCCTTAAAATCAAAGTT-ATTCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGT
387 GCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAAT
588922 CTCCAC-CATTTTCGAGATTGGGAAC
452 CTCCACTC-TTTTCGAGATTGGGAAC
* * * * * * ** *
588947 TAAAAACACATTCCTTTCATTAGTATATGTGACTTTGATGCTTTGGTGTTGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * * * * ** * *
589012 TTTTCAACCATTTTTTATAGAATTAAAGTTTGTCTCTTAAAAAAGGGAAACATAAATAGTCATAC
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * * * *
589077 TAATCCTTATT-TTTTTAGGATTACGCACCATAAACTTATTCTTCTCATAAGGATACATGATATT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATT
* * * * * ** * *
589141 GATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGTTCGTGGCT
196 GATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCT
* * * *
589206 CAATTGTGGCAAACATGGATTCTAGTATTGATCTTCAATCAC----T-A-T----A--A-AAAC-
261 CAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAACT
* * *
589257 -A-T-T-CTCATTAGGATAAATGATATGGATGATTTTCTTTTACATGGAAATCTTTTCTTTTCCT
326 TATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
* * * * * *
589318 TATTTTTCTTAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTCACTCTCATAACAGTCTCC
391 TATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCC
*
589383 ATTCTTTTC-ATGATTGGGAAC
456 ACTCTTTTCGA-GATTGGGAAC
* * * ***
589404 CAAAAACACATTCCTTTCATTAGGATGC-ACGACATTAATGCTTTGGGGTCGCAAGAAAAGCATT
1 CAAAAACACATTCCTTTCAATAGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* * * *
589468 TCTTTCAACCTTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATA
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
* * * ** * * * *
589533 CTAATCCCCATTCTTTTTAGGATTAGGCACTATAAACCAAATCTTCTAATAAGGATACACCATAC
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
* * * * * * *
589598 TGA-AGTATTGGTTTCATAAGAAAGGCTTTCTTGCCACCAATTTTCGTAAAGTCTAAGTTCGTGC
195 TGATGGT-TTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
* * * * ** * *
589662 CTCAAATGCGACAAACATGGGTTCTAGT-ATAGATCTTCATTAATTTTGTGATTAGTCACTATAA
259 CTCAAATGTGCCAAACATGGATTCTAGTAAT-GATCTTCATTCACGTTGTGATTAGGCAGTATAA
*** * *
589726 AAACATTCTCCTCATTAGGATAAATGACATGGAAGATTTTCTTTTGCATGGAAATCTTTTCTTTG
323 ACTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
* * * *** *
589791 CCCTATTTTCCTTAAAATCAATGTTCATCCCTTAAATAAGGTAAGCATTGATTCTTGCAACAGTC
388 CCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATC
*
589856 TCCATTCTTTTC-ATGATTGGGAAC
453 TCCACTCTTTTCGA-GATTGGGAAC
* ***
589880 CAAAAACACATTCCTTTCATTAGGATAC-ACGACATTGATGCTTTGGGGTCGCAAGAAAAGCATT
1 CAAAAACACATTCCTTTCAATAGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* * *
589944 TCTTTCAACCGTTTTTAATAGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAATAGTCATA
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
* * ** * *
590009 CTAATCCTAATT-TTTGTAAGATTAGGCACAATAAACTTAGTCTTCTCATAAGGATACACAATAT
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
* * * * * * *
590073 GGATGCTTTTGTTTCGTAAAAAAGGCTTTCTTCCCACCAAATTTGGTAAAGTCTATGTTCATGTC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
* * *
590138 TCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCACTATGAAC
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
* * * * *
590203 ATATTCTCCTTATTAAGATAAATGATATTGATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCT
325 TTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* * * * * *
590267 CTATTTTCCTTAAAATCAAAATTAATACCTTAAATAAGCCAAGCATTGATTCTCGTAACAGTCTC
390 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
*
590332 CACTCTTTTCGAGATTGGGAAT
455 CACTCTTTTCGAGATTGGGAAC
* * * * * *
590354 GAAAAACACATTCATTTCATTAGGATAC-ATGACATTGACGCTTTGATGTCGCAAGACAAGCATT
1 CAAAAACACATTCCTTTCAATAGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* * * * * *
590418 TCTTCCAACCGATTTTCATAGAATCAAAGTTTGTCCCTTTAATAAGACAAACATGAGTAGTCACA
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
* * * *
590483 CTAATCCGCATTCTATTTTGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACATGATAT
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
* * * *
590548 TGATGGTTTGGTTTCGT-AAGAAAGCTTTCTTCCCACCAATTTCGGTAAAGTCTAAGTTTGTGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
* * * * *
590612 TCAATTTTGACAAACATGGATTCTAGTAATTG-TCTTCATTCA--TTGTCTGATCAGGCACTATA
260 TCAAATGTGCCAAACATGGATTCTAGTAA-TGATCTTCATTCACGTTG--TGATTAGGCAGTATA
* * * * *
590674 AACGTATTTTTCTCATTAGGTTAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
322 AACTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
* * *
590739 GCCCTATTTTCCTTAAAATCAAAGTTTATTCCTTAAATAAGGTAAACATTGATTCTCATAACAAT
387 GCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAAT
* * *
590804 CTCCACTCTTTTCAAGATTCGAAAC
452 CTCCACTCTTTTCGAGATTGGGAAC
*
590829 CAAAAACACATT-CTTTACAATAGGATATGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATT
1 CAAAAACACATTCCTTT-CAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* * *
590893 TCATTCAACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACATGAATAGTCACA
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
* * *
590958 CAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTTTTCTCATAAGGATACATGATAT
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
* * * * *
591023 TGATGGTTTGGTTTTGTAAAAAATGCTTTCTTGCCACCAACTTTGGTAAAGTCTATGTTCATGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
*
591088 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATGAAC
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
* * *
591153 TTCTTCTCCTCCTTAGGATAAATGATATGGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCC
325 TTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* * *
591218 CTATTTTCCTTAAAATCAAAGTTTATTCCTTAAATAAGGTAAACATTGATTCTCATAACAATCTC
390 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
* *
591283 CACTCTTTTCGAGATTCGAAAC
455 CACTCTTTTCGAGATTGGGAAC
* * *
591305 CGAAAACACATT-CTTTACAATAGGATATGAGACATTGATGCTTTAATGTTGCAAGAAAAGCATT
1 CAAAAACACATTCCTTT-CAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* *
591369 TCTTTCAACCGTTTTTGATAGAGTCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTCACA
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
591434 -TAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATA
130 CT-AATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATA
* * * *
591498 TTGATGGTTTGATTTCGTAAAAAAAGCTTTCTTGCCACGAACTTTGGTAAAGTCTATGTTCGTGC
194 TTGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
*
591563 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATGAA
259 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAA
* ** *
591628 CTTCTTCTCCTCCGTAGGATAAATGATATGGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGC
324 CTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * ** * ** *
591693 CCTATATTCCTTAAAATCAAAGTTTATTCCCAAAATAAGGCAGGCATTGATTCTCATATTACTCT
389 CCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCT
* *
591758 CCACTATTCTCGAGATTGGGAAC
454 CCACTCTTTTCGAGATTGGGAAC
* * *
591781 CAAAAACACATTCCTTTCAATAGGATACGTGACATTAATGCTTTAATGTCGGAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * *
591846 CTTTCAACCGTTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAGTAGTCACAC
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
*
591911 TAATCCTCATTCTTTTTTTGGATTAGGAACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
131 TAATCCTCATTC-TTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
* * * * * ** * * *
591976 TGATCGTTTAGTTTTGTAAGAAATGCTTTCTTCCTGCCAGTTTTGGTAAAATCTATGTTCATGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
* * * * * *
592041 TTAAATGTGACAAACATTGATTCTAGTGATGATCATCATTCACTTTGTGATTAGGCAGTATAAAC
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
* * *
592106 TTATTCT-CTTATTAGGATAAATGATATGGATGATTTTCTTTTGCACGAAAATCTTTTCTTTGCC
325 TTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
*
592170 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGTAAGCATTGATTCTCATAACAATCTC
390 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
*
592235 TACTCTTTTCGAGATTGGGAAC
455 CACTCTTTTCGAGATTGGGAAC
* *
592257 CAAAAACACATTCCTTTC-ATCAGGATACGTGACATTGACGCTTTAATGTCGCAAGAAAAGCATT
1 CAAAAACACATTCCTTTCAAT-AGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATT
*
592321 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCACA
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
* * * * *
592386 CAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACATAGTCTTCCCAAAAGCATACACGATAT
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
* * *
592451 TGATGGTTTGGTTTCGT-AAGAAAGCTTTTTTCCCACCAATTTTGGTAAAGTCTATGTTTGTGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
*
592515 TCAAATGTGCCAAACAAGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
* *
592580 TTATTCTCCTCCTTAGGGTAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
325 TTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* *
592645 CTATTTTCCTTAAAATC-AAGTTCATTCCCTAAATAAGGCAAGCATTTATTCTCATAACAATCTC
390 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
*
592709 CACTCTTCTCGAGATTGGGAAC
455 CACTCTTTTCGAGATTGGGAAC
* * * * * * ** *
592731 CAAAAACACGTTTGTCTCTTAAATA--AGAC-AAACA-TGA-G---T-A-GTCAC-A-CTAATC-
1 CAAAAACAC-ATT-CCT-TTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCA
* * * * * * **
592783 -CTCATT---CTGTTTTTTGATTAGGCACAT-AAACTTAGTCTTCTCATAAGGATACACGATATT
63 TTTCTTTCAACCG-TTTTTGA-TA-G-A-ATCAAAGTTTGTC-TCT--TAA--ATA-A-GACAAA
* ** * * ** * *** * * * * ** *
592843 GATTGTTTGGTTTTGTA-AGAAATGCT--TTC-TTCCCGCCAATTTTGGTA-AAGTCTACATTCG
116 CA-TGAATAG---T-CACACTAATCCTCATTCTTTTTTG--GA-TTAGGCACCA-TAAAC-TTAG
* * * * * * ** * * *****
592903 TGC--CTCA-AATG-TGACA--A-A--CATGG-AT--TCTAGTAATGATCATCTTTC-ACTTTGT
171 T-CTTCTCATAAGGAT-ACACGATATTGATGGTTTGGTTTCGTAA-AAAAAGCTTTCTTCCCACC
* * * * * * * ** *
592955 GA-TTAGGCATTATAA-ACT-TATTC-T--CTTATTAGGAT-AAATAATATGGACGATTTGCTTT
233 AATTTTGG---TA-AAGTCTATGTTCGTGCCTCA-AATG-TGCCA-AACAT-G--GA-TT-C--T
* * ** * * * * ** * * * * *
593013 TGCACGAAAATCTTTGCTTTGCCCTATTTTCCTTA---A-AATCAAAGTTCTT-TCCTTAAATAA
284 AGTA--ATGATC-TT-CATT-CAC-GTTGTGATTAGGCAGTAT-AAACTTATTCTCC-T-CATTA
* * * * ** * * ****** *
593073 GGCTAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAAGACATT--C
340 GGATA--AATGA-TAT-GGATGA-T-T---TTCTTTT-G-CA-T-GGAA--ATCTTTTCTTTGCC
* ** * ** * * ** * * * * * **
593136 C---TTTCATTAGGAT--ACGCGACATGGATGCTTTAATGTGGCATGAATGGCTTTTTTTCCAAC
390 CTATTTTCCTTAAAATCAAAG-TTCAT---TCCTTAAATAAGGCAAGCATTGATTCTCAT--AA-
** * ** **** * * ***
593196 CGTTTTTGA-TAGAATC-AAAGTTTGTCTC
448 CAATCTCCACTCTTTTCGAGA-TTGGGAAC
* * ** * * * * * * * ** *
593224 TTAAATAAGACA-AAC-ATGATTA-G-TCAC-ACAAATCCTCATTCTTTTTTGGATTAGGCACA-
1 -CAAA-AACACATTCCTTTCAATAGGAT-ACGAGACAT--TGATGCTTTAAT-G--T-CGCA-AG
* * ** ** * * ** * ** *
593283 ACAAGCTTTGTCTTCTCAAAAG--CAT-ACACGATATTGATGGTTTG-GT-TT-CGTAAGA-AAG
56 AAAAGCATT-TCTT-TCAACCGTTTTTGATA-GA-A-TCAAAGTTTGTCTCTTAAATAAGACAAA
* ** * ** * * * ** * * *
593341 C-T--TTCTTCCCACTAATTTTGGTAAAGTCTATGTTCATGCCTCAAATGTC-CC--AAACAT-G
116 CATGAATAGTCACACTAA---TCCT-CATTCT-T-TT-TTGGAT--TA-GGCACCATAAACTTAG
** * * * * ** * * * *
593399 GATTCT-AGT-AGTGAT---C-TTCATTCA-CGTTGTGATTAGGCAATATAAA-C-TTATTCTCT
171 TCTTCTCA-TAAG-GATACACGAT-ATTGATGGTT-TGGTTTCGTAA-AAAAAGCTTTCTTC-CC
* * * ** * * * **** * ***
593455 TCC---TTAGGATAAATGATATGGATGATTTTATTTTGCATGGAAATCTTTGCTTTGCCCTATTT
230 ACCAATTTTGG-TAAA-G-TCT--ATG----T-TCGTGCCT-CAAA--TGTGC-CAAACATGGAT
* * ** * ** * ** *
593517 TCCTTA-AAATCAAAGTTCATTC-C-CT-AAATAAGGCAAGTATTGATTCTCATAACAATCTCCA
281 T-C-TAGTAAT-GATCTTCATTCACGTTGTGATTAGGC-AGTA-T-AAACT--T---ATTCT-C-
* * ** ** ***** * * *** *
593578 CTCTTTTAGAGATTGGGAACCA-A-AAACCCCATTCCTTT-CAATAGGACA-CGCGAT-ATTGAC
333 CTC-ATTAG-GA-T--AAATGATATGGATGATTTTCTTTTGC-AT-GGAAATC-TTTTCTTTG-C
* * * * * ** ** *
593638 GCT-TTAATGTCGC-AAGGAAAGC--ATTTCTTTCAACCGTTTTTGATAGAATCAA--AGTTTA-
389 CCTATT--T-TC-CTTA--AAATCAAAGTTCATT---CC---TTAAATA-AGGCAAGCA-TTGAT
* *** ** * * **
593696 TCTC-TTA-AATAAGACAAAC--AT-GA-A-TAGTCA-
440 TCTCATAACAAT-CTCCACTCTTTTCGAGATTGGGAAC
* * * * * * * * * *
593726 CATAAATCCTCATACTCTTTTGGATTAGG-CACCATAAAATT-A-GTCTTCTCAAAAG-CGAACA
1 CA-AAA-ACACAT--TCCTTT-CAATAGGATACGA-GACATTGATG-CTT-T--AATGTCG--CA
* * * * ** *** * * ** *
593787 CGATATTGATG-GTTTGGTTTCTTCCCGCCGATTG-TA-AAGTCTACGTTCATG-C-CTCGAATG
54 AGA-A---AAGCATTT-CTTTC-AACCG-TTTTTGATAGAA-TCAAAGTT--TGTCTCTTAAATA
* * * * ** * *
593847 TGACAAACATGGATTCTAGT-A-A-TGATCATCATTC-ACTATGTGATTAGGCACTATAAACTTA
109 AGACAAACAT-GA--ATAGTCACACTAATCCTCATTCTTTTTTG-GATTAGGCACCATAAACTTA
* * * * * * * * * * *** * *
593908 TTC-TCTTATTAGGATAAATGATATGGATGACTTT-CTTTTGCATGGAAATCTTTTCTT-GC-CC
170 GTCTTCTCATAAGGATACACGATATTGATG-GTTTGGTTTCGTAAAAAAAGC-TTTCTTCCCACC
* ** * * * * * * * * * * *
593969 TATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAATG-CTAGCATTGATTCTAGTAA-CAGTCT
233 AATTTT-GGTAAAGTCTATGTTCGTGCCTCAAAT-GTGCCAAACATGGATTCTAGTAATGA-TCT
* * ** * * * ** * ** * ** *** *
594032 CCAATC-TTTTCGAGATTGGGAACCAACAAACACATTC-CTTTTGTTAGGATACGCGACAT---T
295 TCATTCACGTT-GTGATTAGGCA-GTATAAACTTATTCTC-CTCATTAGGATAAATGATATGGAT
** * * * * ** *
594092 G-TTTAATGTCGCAT-GAAAGGCTTTTC-TTCCAACCGT-TTTT-GATAGAATCAAAGTT--TGT
357 GATTTTCTTTTGCATGGAAA-TCTTTTCTTTGC--CC-TATTTTCCTTAAAATCAAAGTTCAT-T
* * ** * * * * *
594150 CTCTTAAGT-AGGACAAACA-TGAATAGTCA-CACAAATC-CTCATTCTTTTTTG-GATTAGGCA
417 C-CTTAAATAAGG-CAAGCATTG-ATTCTCATAAC-AATCTC-CACTC-TTTTCGAGATTGGGAA
594210 C
476 C
* ** * * * * ** * * *
594211 CATAAACTTACT-CTTCTC-ATAAGGATAC-ACGATATTGACGGTTTGGTTTCGTAAGAAAGGC-
1 CAAAAACACATTCCTT-TCAAT-AGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCA
* * * ** * * * * ** ** * * *
594272 TTTATTCCCACCAATTTTGGTA-AAGTCTAAGTTCGTGC-CTCATTTGTGGCAAACATGGATTGT
63 TTTCTTTCAACCGTTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATAGT
* * * * ** * * ** * * * * *
594335 -AGTAATGATCTTCATT-TACTTTGTGATAAGGCACTATAAACAAAGTCTCCTTATTAGGTTAAA
126 CA-CACTAATCCTCATTCTTTTTTG-GATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACA
* * * ** * *** * * * * ** * *
594398 TGATATTAATGATTTTCATTT-GCATGGAAATCTTTTCTTTGCCA-GATTTTTCTTAAAATCAAT
189 CGATATTGATG-GTTTGGTTTCGTAAAAAAAGC-TTTC-TTCCCACCAATTTTGGTAAAGTCTAT
* * * * * * * ** * ** *
594461 GTTCATTCC-CTAAATATGGCAAGCATTGATTC-ACATAACAATCTCCAATT--TTTTCGAGATT
251 GTTCGTGCCTC-AAATGTGCCAAACATGGATTCTA-GTAATGATCTTC-ATTCACGTT-GTGATT
* ** * ** * * *** * * * * ** * ** * *
594522 -GAGAACCAAAAACGCATTC-CTTTCAATAGGATACGCGACATTGACGCTTTAATGTCACAAGAA
312 AG-GCAGTATAAACTTATTCTC-CTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGA
* * * * *
594585 AAGCATTT-TTT-CCAACCATTTT--TTATAGAATCAAAGTT--TGTCTCTTAAATAAGACAAAC
375 AATCTTTTCTTTGCC--CTATTTTCCTTA-A-AATCAAAGTTCAT-TC-CTTAAATAAGGCAAGC
** * * * * *
594644 A-TGAATAGTCA-CACAAATC-CTCATTCTTTTCTG-GATTAGGCAG
434 ATTG-ATTCTCATAAC-AATCTC-CACTCTTTTC-GAGATTGGGAAC
* ** * * * ** * * *
594687 CATAAACTTAGT-CTTCTC-ATAAGGATAC-ATGATATTGATGGTTTGGTTTCGTAAG-AACGC-
1 CAAAAACACATTCCTT-TCAAT-AGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCA
* * ** * * * * * ** * * *
594747 TTTCTTCCCACCAATTTTGGTA-AAGTCTATGTTCGTGC-CTCAAATGTGCCAAACATGGATTGT
63 TTTCTTTCAACCGTTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATAGT
* * * * * * ** * ** * * *
594810 -AGTAATGATCCCCATTC-ATATTGTGATTAGGCAGTATAAACTTATTCCCCTCCTTAGGATAAA
126 CA-CACTAATCCTCATTCTTTTTTG-GATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACA
* * * ** * * *** * ** * ** * * *
594873 TGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAG
189 CGATATTGATGGTTTGGTTTCGTAAAAAAAGC-TTTCTTCCCACCAATTTT-GGTAAAGTCTATG
* * * ** * * * * * * ** * **
594937 TTCATTCCTTAAATAAGGCAAGCTTTGATTCTTGTAA-CAGTCCCCACTC-TTTTCGAT-ATTAG
252 TTCGTGCCTCAAATGTGCCAAACATGGATTCTAGTAATGA-TCTTCATTCACGTT-G-TGATTAG
* * ** * **** * * * ** * * * *
594999 GAACG-AAAAACACATTC-CTTTCATTAGGATCCGCGACATTGATGCTTTGATGTCGCAAGAAAA
314 GCA-GTATAAACTTATTCTC-CTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAA
* * * ** * *** *
595062 GCATTTC-TTCCAACCGT-TTTT-GATAGAATCAAAGTT--TGTCTCTTAAA-AAAATAAACA-T
377 TCTTTTCTTTGC--CC-TATTTTCCTTAAAATCAAAGTTCAT-TC-CTTAAATAAGGCAAGCATT
** * * * * **
595120 GAATAGTCA-CACAAATC-CTCATTCTTTTTG-GATTAGGCGC
437 G-ATTCTCATAAC-AATCTC-CACTCTTTTCGAGATTGGGAAC
* ** * * * * * ** * ** *
595160 CATAAACTTAAT-CTTCTC-ATAAGCATAC-ACGATATTGACGGTTTGGTTTCATAAGAACA-C-
1 CAAAAACACATTCCTT-TCAAT-AGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCA
* * ** * * * * * * * ** * * *
595220 TTTCTTCCCACCAATTTTGGTATAGTCTATGTTCGTGC-CTCAAATGTGCCAAACAATGATTCTG
63 TTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGT-CTCTTAAATAAGACAAAC-ATGA--ATA
* * * *** * ** * * * * *
595284 GT-A-A-TGATCTTCAATC-AAGTTGTGATTAGGTAGTATAAACTTATTCTCCTCCTTAGGATAA
124 GTCACACTAATCCTCATTCTTTTTTG-GATTAGGCACCATAAACTTAGTCTTCTCATAAGGATAC
* * * ** * * *** * * ** * *
595345 ATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC-CC-ATTTTCCTTAAAATCAA
188 ACGATATTGATGGTTTGGTTTCGTAAAAAAAGC-TTTC-TTCCCACCAATTTT-GGTAAAGTCTA
* * * ** * * * * * * * * *** *
595408 TGTTCCTTCCTTAAATAAGGCAAGCTTTGATTCTTGTAA-CAGTCTGCACTCTTTTTGAT-ATTG
250 TGTTCGTGCCTCAAATGTGCCAAACATGGATTCTAGTAATGA-TCTTCATTCACGTTG-TGATTA
* * * ** * **** * * * ** * * *
595471 GGAAGGAAAAACACATTC-CTTTCATTAGGATCCGCGACT-TTGACGCTTTGATGTTGCAAGAAA
313 GGCAGTATAAACTTATTCTC-CTCATTAGGATAAATGA-TATGGATGATTTTCTTTTGCATGGAA
* * * * ** * * * * *
595534 AGCATTTC-TTCCAACCGATTTT-GATAGAATCAAAGCTT-GTCCCTTAAATAAGACAAACA-TG
376 ATCTTTTCTTTGC--CCTATTTTCCTTAAAATCAAAG-TTCATTCCTTAAATAAGGCAAGCATTG
** * * * * * *
595595 AGTAGTCA-CACTAATC-CTCATTCTATTTTG-GGTTAGGCAC
438 A-TTCTCATAAC-AATCTC-CACTCT-TTTCGAGATTGGGAAC
* ** * * * ** * *
595635 CATAAACGTAGT-CTTCTC-ATAAGGATAC-ATGATATTGATGGTTTGGTTTCGTAAG-AAAGC-
1 CAAAAACACATTCCTT-TCAAT-AGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCA
* * ** * * * * * ** *
595695 TTTCTTCCCACCAATTTCGGTA-AAGTCTAAGTTTGTGC-CTCAATTTTGACAAACATGGATTCT
63 TTTCTTTCAACCGTTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATAAGACAAACAT-GA--AT
** * * * * * * * * * *
595758 AGT-A-A-TTGTCTTCATTCATTGTCT-GATCAGGCACTATAAACGTATTTTTCTCATTAGGTTA
123 AGTCACACTAATCCTCATTC-TTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATA
* * * ** * * *** * ** * ** * *
595819 AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC-CCTATTTTCCTTAAAATCAA
187 CACGATATTGATGGTTTGGTTTCGTAAAAAAAGC-TTTCTTCCCACCAATTTT-GGTAAAGTCTA
* ** * * ** ** * ** * * ** * *
595883 AGTTTATTCCTTAAATAAGGTAAACATTGATTCTCA-TAACAATCTCCACTC-TTTTCGAGATTC
250 TGTTCGTGCCTCAAATGTGCCAAACATGGATTCT-AGTAATGATCTTCATTCACGTT-GTGATTA
** ** * ** * * * * * * ** * * * *
595946 GAAACCAAAAACACATTCT-TTACAATAGGATATGA-GACATTGATGCTTTAATGTCGCAAGAAA
313 GGCAGTATAAACTTATTCTCCT-CATTAGGATA-AATGATATGGATGATTTTCTTTTGCATGGAA
* * * * * *** * ** *
596009 AGCATTTCATT-CAACTGTTTTTGATAGAATCAAAGTT--TGTCTCTTAAATAAAACAAACA-TG
376 ATCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCAT-TC-CTTAAATAAGGCAAGCATTG
** * * * * *
596070 AATAGTCA-CACAAATC-CTCATTCTTTTTTG-GATTAGGCAC
438 -ATTCTCATAAC-AATCTC-CACTC-TTTTCGAGATTGGGAAC
* ** * * ** * * *
596110 CATAAACTTAGTT--TTCTC-ATAAGGATAC-ATGATATTGATGGTTTGGTTTTGTAA-AAAATG
1 CAAAAACACA-TTCCTT-TCAAT-AGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAA-G
* * *** * * * * * * *
596170 C-TTTCTTGCCACCAACTTTGGTA-AAGTCTATGTTCGTGC-CTCAAA-AGTGCCAAACATGGAT
61 CATTTCTTTCAACCGTTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATA-AGACAAACAT-GA-
* * ** *** * ** * ** * * *
596231 TCTAGT-A-A-TGATTTTCATTC-ACGTTGTGATCAGGCAATATGAACTTCTTCTCCTCCTTAGG
121 -ATAGTCACACTAATCCTCATTCTTTTTTG-GATTAGGCACCATAAACTTAGTCTTCTCATAAGG
* * * * ** * * *** * ** * ** *
596292 ATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC-CCGATTTTCCTTAAAAT
184 ATACACGATATTGATGGTTTGGTTTCGTAAAAAAAGC-TTTCTTCCCACCAATTTT-GGTAAAGT
* * ** * ** * * * * * * ** *
596356 CAAAGTTTATTCC-CTAAATAAGGCAAGCATTGATTCTCA-TAA-CAGTCTCCACTC-TTTTCGA
247 CTATGTTCGTGCCTC-AAATGTGCCAAACATGGATTCT-AGTAATGA-TCTTCATTCACGTT-GT
* * ** * *** * * * ** * * *
596417 GATTAGG-AATGAAAAACACATTC-CTTTCATTAGGATATGCGACATTGA-CACTTTGATGTCGT
308 GATTAGGCAGT-ATAAACTTATTCTC-CTCATTAGGATAAATGATATGGATGA-TTTTCTTTTGC
* * * * * * *
596479 AAGAAAAGCATTTCTTT-CAACCGT-TTTT--TATAGAATCAAAGTT--TGTCTCTTAATTAAGA
370 ATGGAAATCTTTTCTTTGC--CC-TATTTTCCT-TAAAATCAAAGTTCAT-TC-CTTAAATAAGG
* * * ** * * *
596538 CAAACATGTGTAGTCTC---ACTAATCTTCTTTCTTTTTTG-GATTAGGCAC
429 CAAGCAT-TG-ATTCTCATAAC-AATCTCCACTC-TTTTCGAGATTGGGAAC
* ** * * * * * *** * * * *
596586 CATAAACTTAGT-CTTCTC-ATA-AAGACAGACGATATTGATGGTTCGGTTTCGTAACAAAGGC-
1 CAAAAACACATTCCTT-TCAATAGGATAC-GA-GACATTGATGCTTTAATGTCGCAAGAAAAGCA
* * ** * * * * ** *
596647 TTTCTTCCCACCAATTTT-AGTA-AAGTCTAAGTTCGTGC-CTCAATTGTGACAAACATGGATTC
63 TTTCTTTCAACCGTTTTTGA-TAGAA-TCAAAGTTTGT-CTCTTAAATAAGACAAACAT-GA--A
* * * * * * * *
596709 TAGT-A-AC-AGTCTTCATTCATTTTAT-GATTAGGCACTATAAACGTATTCTTCTCATTAGGTT
122 TAGTCACACTAATCCTCATTC-TTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGAT
* * * ** * * ** * ** * ** * *
596770 AAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC-CCTATTTTCCTTAAAATCA
186 ACACGATATTGATGGTTTGGTTTCGTAAAAAAAGC-TTTCTTCCCACCAATTTT-GGTAAAGTCT
* * * * ** ** * * * ** * * ** *
596834 AAGTTCATTCCTTAAATAAGGTAAGCATTGATTCCCA-TAACAATCTCCACTC-TTTTCGAGATT
249 ATGTTCGTGCCTCAAATGTGCCAAACATGGATT-CTAGTAATGATCTTCATTCACGTT-GTGATT
* ** ** * * * *** * * * ** * * * *
596897 CGAAACCA-AAAATACATTC-CCTACAATAGGATATGCGACATTGATGCTTTAATGTCGCAAGAA
312 AGGCAGTATAAACT-TATTCTCCT-CATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGA
* * * * *** * ** *
596960 AAGCATTTCATT-CAACTATTTTTGATAGAATCAAAGTT--TGTCTCTTAAATAAAACAAACA-T
375 AATCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCAT-TC-CTTAAATAAGGCAAGCATT
** * * * * *
597021 GAATAGTCA-CACAAATC-CTCATTCTTTTTTG-GATTAGGCAC
437 G-ATTCTCATAAC-AATCTC-CACTC-TTTTCGAGATTGGGAAC
* ** * * ** * * *
597062 CATAAACTTAGTT--TTCTC-ATAAGGATAC-ATGATATTGATGGTTTGGTTTTGTAA-AAAATG
1 CAAAAACACA-TTCCTT-TCAAT-AGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAA-G
* * *** * * * * * * *
597122 C-TTTCTTGCCACCAACTTTGGTA-AAGTCTATGTTCGTGC-CTCAAA-AGTGCCAAACATGGAT
61 CATTTCTTTCAACCGTTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATA-AGACAAACAT-GA-
* * ** *** ** * ** * * *
597183 TCTAGT-A-A-TGATTTTCATTC-ACGTTGTGATTAGGCAATATGAACTTCTTCTCCTCCTTAGG
121 -ATAGTCACACTAATCCTCATTCTTTTTTG-GATTAGGCACCATAAACTTAGTCTTCTCATAAGG
* * * * * ** * *** * ** ** ** *
597244 ATAAATGATATGGTTGATTTTCTTTTC-CATGGAAATCATTTCTTTGC-CCTGTTTTCCTTAAAA
184 ATACACGATATTGATG-GTTTGGTTTCGTAAAAAAAGC-TTTCTTCCCACCAATTTT-GGTAAAG
* * * * * * * * * ** * **
597307 TCAAAGTTCATTCC-CTAAATATGGCAAGCATTGATTC-ACATAACAATCTCCAATT--TTTTCG
246 TCTATGTTCGTGCCTC-AAATGTGCCAAACATGGATTCTA-GTAATGATCTTC-ATTCACGTT-G
* * ** * ** * * *** * * * ** * **
597368 AGATT-GAGAACCAAAAACGCATTC-CTTTCAATAGGATACGCGACATTGA-CACTTTAATGTCA
307 TGATTAG-GCAGTATAAACTTATTCTC-CTCATTAGGATAAATGATATGGATGA-TTTTCTTTTG
* * * * * ** * *
597430 CAAGAAAAGCATTT-TTTCCAACCGT-TTTT-GATAGAATCAAAGTT--TGTCTCTTAAATAAGA
369 CATGGAAATCTTTTCTTTGC--CC-TATTTTCCTTAAAATCAAAGTTCAT-TC-CTTAAATAAGG
* ** * * * * * *
597490 CAAACA-TGAATAGTCA-CACAAATC-CTCATTCTTCTCTG-GATTAGGTAG
429 CAAGCATTG-ATTCTCATAAC-AATCTC-CACTCTTTTC-GAGATTGGGAAC
* ** * * * ** * * *
597538 CATAAACTTAGT-CTTCTC-ATAAGGATAC-ATGATATTGATGGTTTGGTTTCGTAAG-AACGC-
1 CAAAAACACATTCCTT-TCAAT-AGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCA
* * ** * * * * * ** * *
597598 TTTCTTCCCACCAATTTTGGTA-AAGTCTATGTTCGTGC-CTCAAATGCGCCAAACATGGATTCT
63 TTTCTTTCAACCGTTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATAAGACAAACAT-GA--AT
* * *** ** * * * *
597661 AGT-A-A-TGATCATCATTC-ACGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCTTAGGATA
123 AGTCACACTAATCCTCATTCTTTTTTG-GATTAGGCACCATAAACTTAGTCTTCTCATAAGGATA
* * * * ** * *** * ** * ** * *
597722 AATGATATGGATGATTTTCTTTTGTATGGAAATCTTTTCTTTGC-CCTATTTTCCATAAAATCAA
187 CACGATATTGATGGTTTGGTTTCGTAAAAAAAGC-TTTCTTCCCACCAATTTT-GGTAAAGTCTA
* * * * ** * * * * ** * * ** ** *
597786 AGTTCATTCCTTAAATAAGGCAAGCTTTGATTCTCA-TAACAATCTCCAAT-ATTTTCAAGATTG
250 TGTTCGTGCCTCAAATGTGCCAAACATGGATTCT-AGTAATGATCTTCATTCACGTT-GTGATTA
* ** * ** * * *** * * * ** * * * *
597849 GGAACCAAAAACACATTC-CTTTCAATAGGATACGCGA-ATTGACGCTTTAATGTCGCAAGAAAA
313 GGCAGTATAAACTTATTCTC-CTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAA
* * * * * *** * * * *
597912 GCATTTCTCT-CAACTGTTTTTGATAGAATCAAAGTTTA-TCTCTTAAATAAGACAAACA-TGAA
377 TCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCATTC-CTTAAATAAGGCAAGCATTG-A
** * * * * *
597974 TAGTCA-CACAAATC-CTCATTCTTTTTTG-GATTAGGCAC
439 TTCTCATAAC-AATCTC-CACTC-TTTTCGAGATTGGGAAC
* ** * * * * * ** * **
598012 CATAAACTTAGT-CTTCCCATAAGGATAC-ATGATATTGATGGTTTGGTTTCTTAAG-AAAGC-T
1 CAAAAACACATTCCTTTCAAT-AGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCAT
* * * ** ** * * * * * *
598073 TCCTTCCCACCAATTTTGGCA-AAGTCTACGTTTACG-C-CTCAAATAGGCCAAACATGGATTCT
64 TTCTTTCAACCGTTTTTGATAGAA-TCAAAGTTT--GTCTCTTAAATAAGACAAACAT-GA--AT
* * *** * * ** * * * *
598135 AGT-A-A-TGATCTTCATTC-ACGTTGTGATTAGGCAGCATAAACTTATTCGCCCCCTTATGATA
123 AGTCACACTAATCCTCATTCTTTTTTG-GATTAGGCACCATAAACTTAGTCTTCTCATAAGGATA
* * * * * ** * * *** * * * ** * *
598196 AATGATATGGACGATTTTCTTTTGCATGGAAATCTTTTCCTT-GC-CCTATTTTCCTTAAAATCA
187 CACGATATTGATGGTTTGGTTTCGTAAAAAAAGC-TTT-CTTCCCACCAATTTT-GGTAAAGTCT
* ** * * ** * * * * * * * **
598259 AAGTTAATTCCTTAAATAAGGCAAGCATTGATTCTTGTAA-CAGTCTCCACTC-TTTTCGAT-AT
249 ATGTTCGTGCCTCAAATGTGCCAAACATGGATTCTAGTAATGA-TCTTCATTCACGTT-G-TGAT
* * ** * ** * **** * * * ** * * * *
598321 TGGGAACAAAAAACACATTC-CTTTCATTAGGATCCGCGACATTGATGCTTTGATGTCGCAAGAA
311 TAGGCAGTATAAACTTATTCTC-CTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGA
* * * *** * * ** *
598385 AAGCATTTC-TT--CCAATCGGTTTTGATAGAATCAAAGTT--TGCCTCTTAAATAAAACAAACA
375 AATCTTTTCTTTGCCCTAT---TTTCCTTAAAATCAAAGTTCAT-TC-CTTAAATAAGGCAAGCA
** * * * * **
598445 -TGAGTAGTCA-CACAAATC-CTCATTCTTTATTG-GATTAGGCGC
435 TTGA-TTCTCATAAC-AATCTC-CACTCTTT-TCGAGATTGGGAAC
** ** * ** * * ** * *
598487 CTTAAACTTAGT-CTTCTC-ATAAGGATACCCGATATTGATGGTTTGGTTTCGTAA-AAACAGCA
1 CAAAAACACATTCCTT-TCAAT-AGGATACGAGACATTGATGCTTTAATGTCGCAAGAAA-AGCA
* ** ** * * * * * ** * ** * *
598549 -TTCTTCCCGCCAATTTTGGTAAAAACTATGTCCGTGC-CTCAAATGTGCCAAACATGGATTCTA
63 TTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGT-CTCTTAAATAAGACAAACAT-GA--ATA
* * *** ** * * * *
598612 GT-A-A-TGATCTTCATTC-ACGTTGTGATTAGGCAGTATAATCTTATTCTCCT-ACTTAGGATA
124 GTCACACTAATCCTCATTCTTTTTTG-GATTAGGCACCATAAACTTAGTCTTCTCA-TAAGGATA
* * * * * ** * * ** ** * ** *
598672 AAAGACATGGACT-ATTTTCTTTTGCATGGAAAA-CTATTCTTTGC-CCTATTTTCCTTAAAATC
187 CACGATATTGA-TGGTTTGGTTTCGTA-AAAAAAGCT-TTCTTCCCACCAATTTT-GGTAAAGTC
* * * * * ** * * * * * * **
598734 AAAGTT-ATTCCTTAAATAAGGCAAGCATTGATTCTCA-TAA-CAGTCTCCACTC-TTTTCGAT-
248 TATGTTCGTGCCTCAAATGTGCCAAACATGGATTCT-AGTAATGA-TCTTCATTCACGTT-G-TG
* * * ** * * **** * * * ** *
598794 ATTGGGAACG-AAAAACACATTC-CTTTCATTCGGATCTGCGACATTGACGCA-TTGATGTTGCA
309 ATTAGGCA-GTATAAACTTATTCTC-CTCATTAGGATAAATGATATGGATG-ATTTTCTTTTGCA
* * * * * * ** * **
598856 AGAAAAGCATTTC-TTCCAACCGATTTT-GATAGAATCAAAGTT--TGTCTCTTAAATAAAACAA
371 TGGAAATCTTTTCTTTGC--CCTATTTTCCTTAAAATCAAAGTTCAT-TC-CTTAAATAAGGCAA
* ** * * * * **
598917 ACA-TGAGTAGTCA-CACTAATC-CTCATTCTTTTTTGA-ATTAGGCGC
432 GCATTGA-TTCTCATAAC-AATCTC-CACTC-TTTTCGAGATTGGGAAC
* ** * * * * ** * *
598962 CATAAACTTAGT-CTTCTC-ATAAGCATAC-ACGATATTGATGGTTTGGTTTCGTAAG-AAAGC-
1 CAAAAACACATTCCTT-TCAAT-AGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCA
* ** * * * * ** * *
599022 TTTC-TTCCACCAATTTTGGTA-AAGTCTATGTTCATG-C-CTCAAATGTGCCAAACATGGATTC
63 TTTCTTTCAACCGTTTTTGATAGAA-TCAAAGTT--TGTCTCTTAAATAAGACAAACAT-GA--A
* * * *** * ** * * *
599083 TAGT-A-A-TGATCTTGATTC-ACGTTGTGATTAGGAAGTATAAACTTA-TGCTCCTCCTTAGGA
122 TAGTCACACTAATCCTCATTCTTTTTTG-GATTAGGCACCATAAACTTAGT-CTTCTCATAAGGA
* * * ** * * * ** *** ** ** ** *
599143 TAAATGATATGGATAACTTT-CTTTTGCATGGAAATTTTTTCTTTGC-CTTATTTTCCTTAAAAT
185 TACACGATATTGAT-GGTTTGGTTTCGTA-AAAAAAGCTTTCTTCCCACCAATTTT-GGTAAAGT
* * * * ** * * * ** * * ** *
599206 CAATGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCA-TAACAATCTCCACTC-TTTTCGAGA
247 CTATGTTCGTGCCTCAAATGTGCCAAACATGGATTCT-AGTAATGATCTTCATTCACGTT-GTGA
* * * ** * * * * ** * * * ** * * *
599269 TTGGGAACG-AAAAACACATTC-CTTTCAATAGGATACACGGCATTGACGCTTTAATGTCGCAAG
310 TTAGGCA-GTATAAACTTATTCTC-CTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATG
* * * ** *** * *
599332 AAAAGCATTTCTTTTAACC-ATTTTTGATAGAATCAAAGTT--TGTCTCTTAAATAAGACAAGCA
373 GAAATCTTTTC-TTTGCCCTATTTTCCTTAAAATCAAAGTTCAT-TC-CTTAAATAAGGCAAGCA
* * * *
599394 -TGAATTGTCATAGA-AATC-CTCATTCTTTTTCG-GATTAGGCAC
435 TTG-ATTCTCATA-ACAATCTC-CACTC-TTTTCGAGATTGGGAAC
* ** * * * * * ** * *
599436 CATAAACTTAGT-ATTCTC-ATCAGCATAC-ACGATATTGATGGTTTGGCT-TCGTAAGAAAGGC
1 CAAAAACACATTCCTT-TCAAT-AGGATACGA-GACATTGATGCTTT-AATGTCGCAAGAAAAGC
* * ** * ** * * *** * *
599497 -TTTCTTCCTACCAATTTTGGTA-AACTGTATGTTCATG-C-CTCAAATGTCACAAACATGGATT
62 ATTTCTTTCAACCGTTTTTGATAGAA-TCAAAGTT--TGTCTCTTAAATAAGACAAACATGAATA
* * * *** ** * * * *
599558 G-CAGTAATGATCCTCATTC-ACGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCTTAGGATA
124 GTCA-CACTAATCCTCATTCTTTTTTG-GATTAGGCACCATAAACTTAGTCTTCTCATAAGGATA
* * * * ** ** ** * *
599621 AATGATATGGATGATTTTCTTT--TACATGGAAA----------C-CC-ATTTTCCTTAAAATCA
187 CACGATATTGATGGTTTGGTTTCGTA-A-AAAAAGCTTTCTTCCCACCAATTTT-GGTAAAGTCT
* * * * ** * * * * ** * * ** **
599672 AAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCA-AAACAATCTCCACTC-TTTTCAAGATT
249 ATGTTCGTGCCTCAAATGTGCCAAACATGGATTCT-AGTAATGATCTTCATTCACGTT-GTGATT
* * ** * ** * * ** * * * ** * * * *
599735 GGGAACCAAAAACACATTC-CTTTCAATAGGATACGTGACATTGATGCTTTAATGTCGCAAGAAA
312 AGGCAGTATAAACTTATTCTC-CTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAA
* * ** * *
599799 AGCATTTCTTT-CAACCGT-TTTT-GATAAAATCAAAGTT--TGTCTCTTAAATAAGACAAACA-
376 ATCTTTTCTTTGC--CC-TATTTTCCTTAAAATCAAAGTTCAT-TC-CTTAAATAAGGCAAGCAT
*** * * * ** * *
599858 TGAATAGACACAAAAATC-CTCATTCTTTTTTAGATTAGGCAC
436 TG-ATTCTCATAACAATCTC-CACTCTTTTCGAGATTGGGAAC
* ** * * * * ** * **
599900 CATAAACTTAGT-CTTCTC-ATAAGCATAC-ACGATATTGATGGTTTGGTTTCATAAG-AAAGC-
1 CAAAAACACATTCCTT-TCAAT-AGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCA
* * * * * * * * * * ** * * *
599960 TTTCTTCCCACC-ATTTTGGTAGAGTCTATGTTCGAGC-C-TCAATGTGCCAAACATGGATTGT-
63 TTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTG-TCTCTTAAATAAGACAAACATGAATAGTC
* * * * *** * * * * * *
600021 AGTAATGATCTTCATTCACGTTGGGATTAGG-----T--A-TT--T-TCCTCCTTAGGATAAATG
127 A-CACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACG
* * * * *** * ** * ** * * *
600075 ATA-TGAATGATTT-CTTTTGCATGGAAATCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGT
191 ATATTG-ATGGTTTGGTTTCGTAAAAAAAGC-TTTCTTCCCACCAATTTT-GGTAAAGTCTATGT
* * ** * * * * * * * *
600137 TCAT-CCATTAAATACGGCAAACATTGATTCTCGTAAT-AGTCTCCA--CTCTTTCGGGATTGGG
253 TCGTGCC-TCAAATGTGCCAAACATGGATTCTAGTAATGA-TCTTCATTCACGTT-GTGATTAGG
* ** * ** * * * **** * * ** ** * * *
600198 AACAAAAAACACATTC-CTTTTATTGGGATACGCAATATTGATGCTTTGATGCTGCAAGAAAAGC
315 CAGTATAAACTTATTCTC-CTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATC
* ** * * * *
600262 TTTTC-TTCCAACCT-TTTTCGATAGAATCAAAGTT--TGTCTCTTAAATAAGACAAACA-TGAG
379 TTTTCTTTGC--CCTATTTTCCTTAAAATCAAAGTTCAT-TC-CTTAAATAAGGCAAGCATTGAT
* * * *
600322 TCGTCA-CACTAATC-CTCATTCTATTTCG-GATTAGGCAC
440 TC-TCATAAC-AATCTC-CACTCT-TTTCGAGATTGGGAAC
* ** * * * * * * ** * * * *
600360 CATAAA-TTAGT-CTTCCCATAAGG--ACGCATGATATTAATGGTTTGGTTTAGTAAGAAAGGC-
1 CAAAAACACATTCCTTTCAAT-AGGATACG-A-GACATTGATGCTTTAATGTCGCAAGAAAAGCA
* * ** * * * * ** * * *
600420 TTTCTTCCCACCAATTTTGGTA-AAGTCTAAGTTCGTGC-C-TCAATGGTGGCAAACATGGATTG
63 TTTCTTTCAACCGTTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAAT-AAGACAAACATGAATAG
* * * * * ** * ** * * *
600482 T-AGTAATGATCTTTA-TCTACTTTGTGATTAGGCACTATAAACAAACT-TTCTTTATTAGGATA
125 TCA-CACTAATCCTCATTCTTTTTTG-GATTAGGCACCATAAACTTAGTCTTC-TCATAAGGATA
* * ** * * * ** * **
600544 -AGTGATATTGATGATTTTCTTTTGCAGAGAAAA-CTTTTCTTTGC-CCTATTTTCCTTAACA-T
187 CA-CGATATTGATGGTTTGGTTTCGTA-AAAAAAGC-TTTCTTCCCACCAATTTT-GGTAA-AGT
** * * ** * * * * * * * * ** *
600605 C-AAATTCAT-CCATTAAATAAGGCAAGCATTGATTCTCGCAA-CAGTCTCCACTC-TTTTCGAG
247 CTATGTTCGTGCC-TCAAATGTGCCAAACATGGATTCTAGTAATGA-TCTTCATTCACGTT-GTG
* * ** * ** * * * *** * * * * ** ** *
600666 ATTGGGAACCAAAAACACATTC-CTTTCAATAAGATACGCGACATTGACGCTTTGATGCTGCAAG
309 ATTAGGCAGTATAAACTTATTCTC-CTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATG
* * *** * *** * * *
600730 AAAAGCTATTCTCCTCCATAGGATAAATGATATGGATGATATTCTTTTGCATGGAAATCTTTTCT
373 GAAA--TCTT-T--T-C-T----T---TGCCCT--AT--T-TTCCTTAAAAT-CAAA---GTTCA
*** * ** * * * ** * * * *
600795 TTGCCCTGTTTTCCTTAA---AATCAAAGTACTCTCCTTAAACAAGGCAAGCATTGATTCTCATA
415 TT--CC----TTAAATAAGGCAAGCATTG-ATTCT-CAT-AACAA-TC-TCCACT-CTTTTC--G
* * ****
600857 ACAATCTCCAC
466 AGATTGGGAAC
** * * *
600868 TCTTTCAAGATTGGGAACCAAAAACACATTCCTTTCAATAAGATACGTGACATTGACGCTTTAAT
1 -C--AAAA---------------ACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAAT
*
600933 GTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGAC
48 GTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* ** *
600998 AAACATGAATAGACACAAAAATCCTCATTCTTTTTTAGATTAGGCACCATAAACTTAGTCTTCTC
113 AAACATGAATAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTC
* * * *
601063 ATAAGCATACATGATATTGATGGTTTGGTTTCAT-AAGAAAGCTTTCTTCCCACC-ATTTTGGTA
178 ATAAGGATACACGATATTGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTA
* * * *
601126 GAGTCTATGTTCGAGCCTCAAATGTGCCAAACATGGATTGTAGTAATGATCTTCATTCACGTTGG
243 AAGTCTATGTTCGTGCCTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGT
* *
601191 GATTA-G--G--------TATTCTCCTCCTTAGGATAAATGATATGAATGA-TTTCTTTTGCATG
308 GATTAGGCAGTATAAACTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATG
* *
601244 GAAATCTTTTCTTTG--C------CCTTAAAATCAAAGTTCA-TCCATTAAATACGGCAAACATT
373 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCC-TTAAATAAGGCAAGCATT
* * *
601300 GATTCTCGTAACAGTCTCCACTC-TTTCGGGATTGGGAAC
437 GATTCTCATAACAATCTCCACTCTTTTCGAGATTGGGAAC
* * * * * * * *
601339 AAAAAACACATTCCTTTTATTGGGATACGCA-ATATTGATGCTTTGATGCCGCAAGAAAAGCTTT
1 CAAAAACACATTCCTTTCAATAGGATACG-AGACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* * * *
601403 TCTTCCAACC-TTTTTCGATAGAATAAAAGTTTGTCTCTTAAATAAGACAAACATGAGTCGTCAC
65 TCTTTCAACCGTTTTT-GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCAC
* * * * ** *
601467 ACTAATCCTCATTCTATTTCGGATTAGGCACCATAAAATTAGTCTTCCCATAAGGACGCATGATA
129 ACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATA
* * * * *
601532 TTAATGGTTTGGTTTAGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGC
194 TTGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
* * * * *
601597 CTC-AATGGTGGCAAACATGGATTGTAGTAATGATCTTTA-TCTACTTTGTGATTAGGCACTATA
259 CTCAAAT-GTGCCAAACATGGATTCTAGTAATGATCTTCATTC-ACGTTGTGATTAGGCAGTATA
** * * * * * *
601660 AACAAACTT-TCTTTATTAGGATAAGTGATATTGTTGATTTTCTTTTGCA-GAGAAAACTTTTCT
322 AACTTA-TTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATG-GAAATCTTTTCT
* **
601723 TTGCCCTATTTTCCTTAACATCAAA-TTCA-TCCATTAAATAAGGCAAGCATTGATTCTCGCAAC
385 TTGCCCTATTTTCCTTAAAATCAAAGTTCATTCC-TTAAATAAGGCAAGCATTGATTCTCATAAC
*
601786 AGTCTCCACTCTTTTCGAGATTGGGAAC
449 AATCTCCACTCTTTTCGAGATTGGGAAC
* * * * * *
601814 CAAAAACACATTCCTTTCAATAAGATACGCGACATTGACGCTTTGATGCCGCAAGAAAAGCTTTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * ** * *
601879 CTTCCAACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGATGAATATGAATAGTCACAA
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * *
601944 AAATCCTTATTCCTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAT-AGGCATACACGATAT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGG-ATACACGATAT
* * *
602008 TGATGGTTTGGTTTCGT-AAGAAAGCTTTCTTCCCAGCAATTTTGGTAAAATCTATGTTCGTGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
*
602072 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTT-TTTCACGTTGTGATTAGGCAGTATAAAC
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
*
602136 TTATTCTCCTCCA-TAGGATAAATGATATGGATGATATTCTGTTT-CATGGAAATCTTTTCTTT-
325 TTATTCTCCT-CATTAGGATAAATGATATGGATGATTTTCT-TTTGCATGGAAATCTTTTCTTTG
* *
602198 CCTCTATTTTCCTTAAAATCAAAGTAC-TCTCCTTAAACAAGGCAAGCATTGATTCTCATAACAA
388 CC-CTATTTTCCTTAAAATCAAAGTTCAT-TCCTTAAATAAGGCAAGCATTGATTCTCATAACAA
602262 TCTCCACTCTTTTCGAGATTGGGAAC
451 TCTCCACTCTTTTCGAGATTGGGAAC
* * *
602288 CAAAAACACATTCCTTTCAATAAGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * * *
602353 CTTTCAACCGTTTTTTATAGAATCCAAGTTTGTCTCTTAAATAAGACAAACATGAATAGACACAA
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * *
602418 AAATCCTCATTCTTCTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGCATACACGATATT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATT
* * * * *
602483 GATGGTTTGGTTTCGTAAGAAACGCTTTTTTCCCACCAATTTTGGTAAAGTCTATGTACATGCCT
196 GATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCT
* * * * *
602548 TAAATGTGACAAACATGGATTGTAGTAATGATCCTCATTCACGTTGTGATTCGGCAGTATAAACT
261 CAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAACT
* * *
602613 TATTCTCCTCCTTAGGATAAATGAGATGGATGATTTTCTTTTGCATGGAAATTTTTTCTTTGCCC
326 TATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
602678 TATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCC
391 TATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCC
* *
602743 ACTGTTTTCGAGATCGGGAAC
456 ACTCTTTTCGAGATTGGGAAC
* *
602764 CAAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * *
602829 CTTTCAACCATTTTTGATAGAGTCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGACACAC
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * * *
602894 AAATCCTCATTCTTTTTTAGATTAGGCACCATAAACTTAGTCTTCTTATAAGCG-TACACGATGT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAG-GATACACGATAT
* * *
602958 TGATGGTTTGGTTTCAT-AAGAAAGCTTTTTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
* * * * *
603022 TCAAATGTGCCAAACATGGATTGTGGTAATGATCTTTA-TCTACTTTGTGATTAGGCACTATAAA
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTC-ACGTTGTGATTAGGCAGTATAAA
** * * * * *
603086 CAAACTT-TCTTTATTAGGATAAGTGATATTGATGATTTTCTTTTGCA-GAGAAAACTTTTCTTT
324 CTTA-TTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATG-GAAATCTTTTCTTT
* ** *
603149 GCCCTATTTTCCTTAACATCAAA-TTCA-TCCATTAAATAAGGCAAGCATTGATTCTCGCAACAG
387 GCCCTATTTTCCTTAAAATCAAAGTTCATTCC-TTAAATAAGGCAAGCATTGATTCTCATAACAA
603212 TCTCCACTCTTTTCGAGATTGGGAAC
451 TCTCCACTCTTTTCGAGATTGGGAAC
* * *
603238 CAAAAACACATTCCTTTCAATAGGATACGCA-ACATTGACGCTTTGATGTCGCAAGAAAAGCTTT
1 CAAAAACACATTCCTTTCAATAGGATACG-AGACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* * *
603302 TCTTCCAACCGTTTTTTATAGAATCAAAGTTTCTCTCTTAAATAAGACAAACATGAATAGTCACA
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
* * * *
603367 CAAATCCTTATTCCTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAT-AGGCATACACGATG
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGG-ATACACGATA
* *
603431 TTGATGGTTTGGTTTCAT-AAGAAAGCTTT-TTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
194 TTGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
* * * * *
603494 CTCAAATGTGCCAAACATGGATTGTGGTAATGATCTTTA-TCTACTTTGTGATTAGGCACTATAA
259 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTC-ACGTTGTGATTAGGCAGTATAA
** * * * * *
603558 ACAAACTT-TCTTTATTAGGATAAGTGATATTGATGATTTTCTTTTGCA-GAGAAAACTTTTCTT
323 ACTTA-TTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATG-GAAATCTTTTCTT
* **
603621 TGCCCTATTTTCCTTAACATCAAA-TTCA-TCCATTAAATAAGGCAAGCATTGATTCTCGCAACA
386 TGCCCTATTTTCCTTAAAATCAAAGTTCATTCC-TTAAATAAGGCAAGCATTGATTCTCATAACA
*
603684 GTCTCCACTCTTTTCGAGATTGGGAAC
450 ATCTCCACTCTTTTCGAGATTGGGAAC
* * * *
603711 CAAAAACACATTCCTTTCAATAAGATACGCGACATTGACGCTTTAATGTCGCAAGGAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* *
603776 CTTTCAACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCA-AA
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * * * * *
603840 TAAATCCTCATACTCTTTTGGATTAGGCACCATCAACTTAGTCTTCTCAAAAGCAAACACGATAT
131 T-AATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
* * *
603905 TGATGGTTTGGTTTCGT-AAGAAAGCTTTCTTCCCACCAATTTCGGTAAAGTCTATGTTCATGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
*
603969 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCAATCACGTTGTGATTAGGCAGTATAAAC
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
* *
604034 TTATTCT-CTTATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAGTCTTTTCTTTGCC
325 TTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
*
604098 CTATTTTCCTTAAAATCAAAGTTCATTCCTT--AT-A-GCAAGCATTGATTCTCATAACAGTCTC
390 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
*
604159 CACTCTTCTT-TAGATTGGGAAC
455 CACTCTT-TTCGAGATTGGGAAC
* * ** * *
604181 CAAAAACACATTCCTTTCATTAGGATACGCGACATTGACACTTTAATGTCGCATGAAAATCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * * * * *
604246 CTTTGAACCGTTTTTTATAGAATCAACGTTTGTCTCTTAAATAAGGCAAAGATGAATAGTCACAA
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * *
604311 AAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCATCCCATAAGGATACACGATATT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATT
* * * * * *
604376 GATGGTTTGGTTTGGTAAGAAAGGCTTTATTCCCACCAATTTTGGTAAAGTTTAAT-ATCGTGCC
196 GATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCT-ATGTTCGTGCC
* * ** * * * * * * *
604440 TCAATTGTGGCAAACATGCTTTGTAG-AATGTTTTTCATTTACTTTGTGATAAGGC-GCTACAAA
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAG-TATAAA
** * * * *
604503 CAAAGTCTCCTTATTAGGATAAATGATATGGATGATTTCCTTTTGCATGAAAATCTTTTCTTTGC
324 CTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
604568 CCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCT
389 CCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCT
*
604633 CCACTCTTTTCGAGATTAGGAAC
454 CCACTCTTTTCGAGATTGGGAAC
* * * *
604656 AAAAAACACATTCCTTTTAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* *
604721 CTTTCAACCGTTTTTCATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACCT-AAGTAGTCACA
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA-TAGTCACA
* * * * *
604785 CAAATTCTCATTCTTTTTTGGATTAGGCACCCTAAACTTAGTCTTATCATAAGCATACACGATAT
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
* *
604850 TGATGGTTTGGTTTCGT--AAGAA-CTTTCTTCCCACCAATTTTGGTAAAGCCTATGTTCGTGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
* ** *
604912 TCAAATGTGCCAAGCATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGTGGTATAAAT
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
* * * * *
604977 TTATTCTCCTCCTCAGGATAAATGATATGGGTGATTTTCTTTTGCATGTAAATCTTTTTTTTTGC
325 TTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATC-TTTTCTTTGC
* ** *
605042 CCTATTTTCCTTAAAATAAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTCT
389 CCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCT
605107 CCACTC-TTTCGAGATTGGGAAC
454 CCACTCTTTTCGAGATTGGGAAC
* * **
605129 AAAAAACACATTCATTTCAATAGGATAC-ACGACATTGACACTTTAATGTCGCAAGAAAAGCATT
1 CAAAAACACATTCCTTTCAATAGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* * * * * * *
605193 TATTCCAACCGTTTTTGATAGAATCAAAGTGTGTCTCTCAAATAAGACAGACATGAGTTGTCACA
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
*
605258 CTAATCCTCATTCTTTTTTGAATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
* * * *
605323 TGATGGTTTGGTTTTGTAAAAAATGCTTTCTTGCCACCAACTTTGGTAAAGTCTATGTTCGTGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
*
605388 TCAAAAGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATATAA
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAG--TATAA
* * *
605453 ACTTATTCTCCTCCTTAGGATAAATGATATGGATGATTTTCTTTTGCGTGGAAATCCTTTCTTTG
323 ACTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
* * * * *
605518 CCTTATTTTCCTTAAAATCAAAGTTCAATCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTC
388 CCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATC
* * *
605583 TCCACTCTTTTTGAGCTTGGGAAT
453 TCCACTCTTTTCGAGATTGGGAAC
* * * * * * *
605607 GAAAAACACAATCCTTTCATTAGGATATGCGACACTGATGCTTTGATGTCGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * * * *
605672 CTTCCAACCATTTTTGATAGAATCAAAGTTTGTCTTTTAAATAAGACAAACATTAGTAGTCACAC
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * * *
605737 TAATCTTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAAAAGCATGCACGATATT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATT
*
605802 GATGGTTTGGTTTCGT-AAGAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCT
196 GATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCT
* * *
605866 CAAATGTGCCAAACATGGATTCTAGAAATGATCTTCATTCACATTGTGATTAGGCAGAATAAACT
261 CAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAACT
*
605931 TATTCT-CTTATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
326 TATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
* * * *
605995 TATTTTCCTGAAAATCAAACTTCATTCTTTAAATAAGGCAAGCATTAATTCTCATAACAATCTCC
391 TATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCC
* **
606060 ACTCTTTTTGAGATTCAGAAC
456 ACTCTTTTCGAGATTGGGAAC
*
606081 CAAAAACACATTCCTTTC-ATCAGGATACGCA-ACATTGACGCTTTAATGTCGCAAGAAAAGCAT
1 CAAAAACACATTCCTTTCAAT-AGGATACG-AGACATTGATGCTTTAATGTCGCAAGAAAAGCAT
606144 TTCTTTCAACCG-TTTTGATAGAATCAAAGTTTGTCTCTT-AATAAGACAAACATGAATAGTCAC
64 TTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCAC
*
606207 ACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATA
129 ACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATA
* *
606272 TTGATGGTTTGGTTTTGTAAAAAAAGCTTTCTTGCCACCAATTTTGGTAAAGTCTATGTTCGTGC
194 TTGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
*
606337 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATGAA
259 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAA
* * * *
606402 CTTCTTCTCCTTC-TTAGGATAAATAATATGGATGGTTTTCTTTTGCACGGAAATCTTTTCTTTG
324 CTTATTCTCC-TCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
* * **
606466 CCCTATATTCCTTAAAATCAAAGTTTATTCCCAAAATAAGGCAAGCATTGATTCTCATAACAATC
388 CCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATC
* *
606531 TCCACTCTTTTCAAGATTAGGAAC
453 TCCACTCTTTTCGAGATTGGGAAC
* * *
606555 CAAAAACCCATTCCTTTCAATAGGATAC-ACGACATTGAAGCTTTAATGTCGCAAGAAAAGTATT
1 CAAAAACACATTCCTTTCAATAGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* * * **
606619 TCTTTCAACCGTTTTTAATGGAATCAAAGTTTGTCTCATAAATAAGACAAACATGCGTAGTCACA
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
*
606684 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGAAAT
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
** * * * * * *
606749 TGATCATTTGGTTTTGTAAGAAATGCTTTCTTCCCGCCAA-TTTGGTAAAGTCTACGTTCGTGTC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
* * * * *
606813 TCAAATGTGACAAACATGGATTCTAGTAATAATCATCATTCACTTTGTGATTAGGCACTATAAAC
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
* * *
606878 TTA-TCT-CTTATTAGGATAAATGATATGGATGATTTTCTTCTGCATGGAAATCTTTTCTTTACC
325 TTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* *
606941 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCTAGCATTGATTCTCATAACAGTCTC
390 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
607006 CACTCTTTTCGAGATTGGGAAC
455 CACTCTTTTCGAGATTGGGAAC
* * * * * * * *
607028 CAAAAACACATTCCTTTCATTAGGATACGCGACACTGATGCTTTAATGGCGTATGAAAGGCTTTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * * * *
607093 CTTCCAACCGTTTTTAATAGAAGCAAAGTTTGTCTCTTAAATAAGACAAGCAAGAATAGTCACA-
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* *
607157 AAATCCTCATTCTTTTTTGGATTAGGCACCCTAAACTTAGTCTTCTC--AAGGCATACACGATAT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGG-ATACACGATAT
* ** ** * * * *
607220 TGATGATTTGGTTTTATAGGAAAGGCATT-TTCCCACCAAATTTGGTAAAGTCTGA-GTTCGTAC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCT-ATGTTCGTGC
* * ** *
607283 CTC-AATAGTGACAAACATGGATTCTAGTAATGGTCTTCA-TCATTTTGTGATAAGGC-GCTATA
259 CTCAAAT-GTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAG-TATA
* * * *
607345 AACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCACGG-AATCTTTTCTTT
322 AACTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
* * * * * *
607409 GCCTTATTTTCCTTAAAAATCAAATTTAATTCCTTAAATAA-GCAAGCTTTGATTCCCATAACAG
387 GCCCTATTTTCCTT-AAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAA
*
607473 TCTCCACTCTTTTCAAGATTGGGAAC
451 TCTCCACTCTTTTCGAGATTGGGAAC
* * * ** ** *
607499 CAAAAACACATTCC-TTCTATTGGGATA-TATGACATTGGCGCTTTGGTGTCACAAGAAAAGCAT
1 CAAAAACACATTCCTTTC-AATAGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCAT
* * ** *
607562 TTC-TCCAACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGATTAACATGAATAGTCAT
64 TTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCAC
* * * * *
607626 ACTAATCCTTATT-TTTTTAGGATTAGGCACCAGAAACTTAGTCTTCTCATAATGATACATGATA
129 ACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATA
* * * * * * * * *
607690 TTGATGCTTTGGCTTCGCAAGAAAGGCTTTCTT-CCGCCAATTTTTGTAAACTCTAAGTTCGTGC
194 TTGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
* * ** * *
607754 CTCAATTGTGACAAACATGGATTCTAGT-ATAGAT-TTCCATTCATTTTGTGATTAGTCACTATA
259 CTCAAATGTGCCAAACATGGATTCTAGTAAT-GATCTT-CATTCACGTTGTGATTAGGCAGTATA
*** * * ** *
607817 AAAACA-T-T-CTCATTAGTATAAATGGTATGGATGATTTTCTTTTGCATCAAAATCGTTTCTTT
322 AACTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
** * ** *
607879 GCTGTATGTTCCTTAAAATCAAAGTT-ATTCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGT
387 GCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAAT
607943 CTCCAC-CATTTTCGAGATTGGGAAC
452 CTCCACTC-TTTTCGAGATTGGGAAC
* * * * * * ** *
607968 TAAAAACACATTCCTTTCATTAGTATATGTGACTTTGATGCTTTGGTGTTGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * * * * * *
608033 TTTTCAACCATTTTTTATAGAAT-AAAGTTTGTCTCTTAAAAAAGGCAAACATAAATAGTCATAC
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * * * *
608097 TAATCCTTATT-TTTTTAGGATTACGCACCATAAACTTATTCTTCTCATAAGGATACATGATATT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATT
* * * * * ** * *
608161 GATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGTTCGTGGCT
196 GATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCT
* * * *
608226 CAATTGTGGCAAACATGGATTCTAGTATTGATCTTCAATCAC----T-A-T----A--A-AAAC-
261 CAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAACT
* * *
608277 -A-T-T-CTCATTAGGATAAATGATATGGATGATTTTCTTTTACATGGAAATCTTTTCTTTTCCT
326 TATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
* * * * *
608338 TATTTT-CTT-AAATCAATGTTCATCCCTT-AATAAGGCAAGCATTCACTCTCATAACAGTCTCC
391 TATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCC
*
608400 ATTCTTTTC-ATGATTGGGAAC
456 ACTCTTTTCGA-GATTGGGAAC
* * * ***
608421 C-AAAACACATTCCTTTCATTAGGATGC-ACGACATTAATGCTTTGGGGTCGCAAGAAAAGCATT
1 CAAAAACACATTCCTTTCAATAGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* * * *
608484 TCTTTCAACCTTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATA
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
* * * ** * * * *
608549 CTAATCCCCATTATTTTTAGGATTAGGCA-CATAAACCAAATCTTCTAATAAGGATACACCATAC
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
* * * * * * *
608613 TGA-AGTATTGGGTTTCATAAGAAAGGCTTTCTTGCCACCAATTTTCGTAAAGTCTAAGTTCGTG
195 TGATGGT-TT-GGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTG
* * * * ** * *
608677 CCTCAAATGCGAC-AACATGGGTTCTAGT-ATAGATCTTCATTAATTTTGTGATTAGTCACTATA
258 CCTCAAATGTGCCAAACATGGATTCTAGTAAT-GATCTTCATTCACGTTGTGATTAGGCAGTATA
*** * *
608740 AAAACATTCTCCTCATTAGGATAAATGAACATGGAAGATTTTCTTTTGCATGGAAATCTTTTCCT
322 AACTTATTCTCCTCATTAGGATAAATG-ATATGGATGATTTTCTTTTGCATGGAAATCTTTT-CT
* * * ***
608805 TTGCCCTATTTT-CTTAAAATCAATGTTCATCCCTTAAATAAGGTAAGC-TTGATTCTTGCAACA
385 TTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACA
* * *
608868 GTCTCCATTCTTTTCAATGATTGGGAAC
450 ATCTCCACTCTTTTCGA-GATTGGGAAC
* ***
608896 C-AAAACACATTCCTTTCATTAGGATAC-ACGACA-TGATGCTTTGGGGTCGCAAGAAAAGCATT
1 CAAAAACACATTCCTTTCAATAGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* *
608958 TCTTTCAAACCGGTTTTTAATAGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAATAGTCA
65 TCTTTC-AACC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCA
* * * ** * *
609023 TACTAATCCTAATT-TTTGTAAGATTAGGCACAAT-AACTTAGTCTTCTCATAAGGATACACAAT
128 CACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGAT
* * * * * *
609086 ATGGATGCTTTTGTTTCGTAAAAAAGGCTTTTCTTCCCACCAAATTTGGTAAAGTCTATGTTCAT
193 ATTGATGGTTTGGTTTCGTAAAAAAAGC-TTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGT
* * * * *
609151 GTCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGAGTAGGCACTATG
257 GCCTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATA
* * * * *
609216 AACATATTCTCCTTATTAAGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTT
322 AACTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
* * * * * * *
609281 GCTCTATTTTCCTTAAAATCAAAATTAAATACCTTAAATAAGGCAAGCATTGATTTTCGTAACAG
387 GCCCTATTTTCCTTAAAATCAAAGTT-CATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAA
* *
609346 TCTCCACTCTTGTCGAGATTGGGAATG
451 TCTCCACTCTTTTCGAGATTGGGAA-C
* * * * * *
609373 AAAAAACACATTCATTTCATTAGGATAC-ATGACATTGACGCTTTGATGTCGCAAGACAAGCATT
1 CAAAAACACATTCCTTTCAATAGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* * * * * *
609437 TC-TTCCACCGATTTTCATAGAATCAAAGTTTGTCCCTTTAATAAGACAAACATGAGTAGTCCAC
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGT-CAC
* * * *
609501 ACT-ATCCGCATTCTATTTTGGGATT-GGCACCATAAACGTAGTCTTCTCATAAGGATACATGAT
129 ACTAATCCTCATTCT-TTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGAT
* * * *
609564 ATTGATAGG-TTGGTTTCGT--AAGAAGCTTTCTTCCCACCAA-TTTCGTAAAGTCTAAGTTTAG
193 ATTGAT-GGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATG-TTCG
* * *
609625 TGCCTCAATATTTGACAAACATGGATTCTAGTAATTG-TCTTCATTCA--TTGTCTGATCAGGCA
256 TGCCTCAA-ATGTGCCAAACATGGATTCTAGTAA-TGATCTTCATTCACGTTG--TGATTAGGCA
* * * * * *
609687 CTATAAACGTATTTTTCTCATTAGGTTAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTT
317 GTATAAACTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTT
* * *
609752 TCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATTCCTTAAATAAGGTAAACATTGATTCTCATA
382 TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATA
* * *
609817 ACAATCTCCACTCTTTTCAAGATTCGAAAC
447 ACAATCTCCACTCTTTTCGAGATTGGGAAC
*
609847 C-AAAACACATT-CTTTACAATAGGATATGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATT
1 CAAAAACACATTCCTTT-CAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* * *
609910 TCATTCAACTG-TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACATGAATAGTCACA
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
* * *
609974 CAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTTTTTCTCATAAGGATACATTGAT
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAG-TCTTCTCATAAGGATACA-CGAT
* * * * * *
610039 A-TGGT-GTTTGGTTTTGTAAAAAATGCTTTCTTGCCACCAACTTTGGTAAAGTCTATGTTCATG
193 ATTGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTG
* * *
610102 CCTCAAATGTGCCAAACATGGATTGCTAGTAATGATCTTCATTCACGTGGTGATTAGGCCGTATG
258 CCTCAAATGTGCCAAACATGGATT-CTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATA
* * *
610167 AACTTCTTCTCCTCCTTAGGATAAATGATATGGATGATTTTTTTTTGCATGGAAATCTTTTCTTT
322 AACTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
* * *
610232 GCCCTATTTTCCTTAAAATCAAAGTTTATTCCTTAAATAAGGTAAACATTGATTCTCATAACAAT
387 GCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAAT
* *
610297 CTCCACTCTTTTCGAGATTCGAAAC
452 CTCCACTCTTTTCGAGATTGGGAAC
* * *
610322 CGAAAACACATT-CTTTACAATAGGATATGAGACATTGATGCTTTAATGTTGCAAGAAAAGCATT
1 CAAAAACACATTCCTTT-CAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* *
610386 TCTTTCAACCGTTTTTGATAGAGTCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTCACA
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
610451 -TAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATA
130 CT-AATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATA
* * * *
610515 TTGATGGTTTGATTTCGTAAAAAAAGCTTTCTTGCCACGAACTTTGGTAAAGTCTATGTTCGTGC
194 TTGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
*
610580 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATGAA
259 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAA
* * *
610645 CTTCTTCTCCTCCTTAGGATAAATGATATGGATGATTTTTTTTTGCATGGAAATCTTTCTTTTTC
324 CTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAA----TC-TTTTC
* * ** *
610710 TTTGCCCTATATTCCTTAAAATCAAAGTTTTATTCCCAAAAATAAGGCAGGCCATTGATTCTCAT
384 TTTGCCCTATTTTCCTTAAAATCAAAG-TTCATT-CCTTAAATAAGGCAAG-CATTGATTCTCAT
** * * *
610775 ATTACTCTCCACTATTCTCGAGATTGGGAAC
446 AACAATCTCCACTCTTTTCGAGATTGGGAAC
* * *
610806 CAAAAACACATTCCTTTCAATAGGATACGTGACATTAATGCTTTAATGTCGGAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * *
610871 CTTTTCAACCGTTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATAGAGTAGTCAC
66 C-TTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAATAGTCAC
*
610936 ACTAATCCTCATTCTTTTTTTGGATTAGGAACCATAAACTTAGTCTTCTCAT-AGGATACAACGA
129 ACTAATCCTCATTC-TTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATAC-ACGA
* * * * * ** * * *
611000 TATTGATCGTTTAGTTTTGTAAGAAATGCTTTCTT-CTGCCAGTTTT-GTAAAATCTAATGTTCA
192 TATTGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCT-ATGTTCG
* * * * * *
611063 TGCCTTAAATGTGACAAACATTGATTCTAGTGATGATCATCATTCACTTTGTGATTAGGCA-TAT
256 TGCCTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTAT
* * *
611127 AAACTTATTCT-CTTATTAGGATAAATGATATGGATGATTTTCTTTTGCACGAAAATCTTTTCTT
321 AAACTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTT
*
611191 TGCCCTATTTTCCTTAAAAATCAAAGTTCATTCCTTAAATAAGGTAAGCATTGATTCTCATAACA
386 TGCCCTATTTTCCTT-AAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACA
*
611256 ATCTCTACTCTTTTCGAGATTGGGAAAC
450 ATCTCCACTCTTTTCGAGATTGGG-AAC
* *
611284 CAAAAACAACATTCCTTTCAATCAGGATACGTGACATTGACGCTTTAATGTCGCAAGAAAAGCAT
1 CAAAAAC-ACATTCCTTTCAAT-AGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCAT
*
611349 TTCTTTTCAACCGTTTTTGATAGAATCAAAGTTTGGTCTCTT-AATAAGACAAACATTAATAGTC
64 TTC-TTTCAACCGTTTTTGATAGAATCAAAGTTT-GTCTCTTAAATAAGACAAACATGAATAGTC
* * * *
611413 ACACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACATAGTCTTC-CAAAAGCATACACGA
127 ACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGA
* * *
611477 TATTGATGG-TTGGTTTCGT-AAGAAAGCTTTTTTTCCCACCAATTTTGGTAAAGTCTATGTTTG
192 TATTGATGGTTTGGTTTCGTAAAAAAAGC-TTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCG
*
611540 TGCCTCAAATGT-CCAAACAAGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTAT
256 TGCCTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTAT
* *
611604 AAACTTATTCTCCTCCTTAGGGTAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTT
321 AAACTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* *
611669 TGCCCTATTTTCCTTAAAATC-AAGTTCATTCCCTAAATAAGGCAAGCATTTATTCTCATAACAA
386 TGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAA
*
611733 TCTCCACTCTTCTCGAGATTGGGAAC
451 TCTCCACTCTTTTCGAGATTGGGAAC
* * * * * * * ** *
611759 CAAAAACACGTTTGTCTCTTAAATA--AGACAAAACA-TGA-G---T-A-GTCAC-A-CTAATC-
1 CAAAAACAC-ATT-CCT-TTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCA
* * * * * * **
611812 -CTCATT---CTGTTTTTTGATTAGGCACAT-AAACTTAGTCTTCTCATAAGGATACACGATATT
63 TTTCTTTCAACCG-TTTTTGA-TA-G-A-ATCAAAGTTTGTC-TCT--TAA--ATA-A-GACAAA
* ** * * ** * *** * * * * ** *
611872 GATTGTTTGGTTTGTA-AGAAATGCT--TTC-TTCCCGCCAATTTTGGTA-AAGTCTACATTCGT
116 CA-TGAATAG--T-CACACTAATCCTCATTCTTTTTTG--GA-TTAGGCACCA-TAAAC-TTAGT
* * * * * * ** * * ******
611932 GC--CTCA-AATG-TGACA--A-A--CATGG-AT--TCTAGTAATGATCATCTTTC-ACTTTGTG
172 -CTTCTCATAAGGAT-ACACGATATTGATGGTTTGGTTTCGTAA-AAAAAGCTTTCTTCCCACCA
* * * * * * ** * *
611984 A-TTAGGCATTATAA-ACT-TATTC-T--CTTATTAGGAT-AAATAATATGGACGATTTGCTTTT
234 ATTTTGG---TA-AAGTCTATGTTCGTGCCTCA-AATG-TGCCA-AACAT-G--GA-TT-C--TA
* ** * * * * ** * * * * *
612042 GCACGAAAATCTTTGCTTTGCCCTATTTTCCTTA---A-AATCAAAGTTCTT-TCCTTAATAAGG
285 GTA--ATGATC-TT-CATT-CAC-GTTGTGATTAGGCAGTAT-AAACTTATTCTCC-TCATTAGG
* * * * ** * * ****** *
612102 CTAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCGAGATTGGGAACCAAAAAGACATT--CC-
342 ATA--AATGA-TAT-GGATGA-T-T---TTCTTTT-G-CA-T-GGAA--ATCTTTTCTTTGCCCT
* ** * ** * * ** * * * * * * *
612164 --TTTCATTAGGAT--ACGCGACATGGATGCTTTAATGTGGCATGAATGGCTTTTTTCCA-ACCG
392 ATTTTCCTTAAAATCAAAG-TTCAT---TCCTTAAATAAGGCAAGCATTG--ATTCT-CATAACA
* * ** **** * * ***
612224 TTTTTGA-TAGAATC-AAAGTTTGTCTC
450 ATCTCCACTCTTTTCGAGA-TTGGGAAC
* * ** * * * * * * * * *
612250 TTAAATAAGACA-AAC-ATGATTA-G-TCAC-ACAAATCCTCATTCTTT-TTGGATTAGGCACA-
1 -CAAA-AACACATTCCTTTCAATAGGAT-ACGAGACAT--TGATGCTTTAAT-G--T-CGCA-AG
* * ** ** * * ** * ** *
612308 ACAAGCTTTGTCTTCTCAAAAG--CAT-ACACGATATTGATGGTTTG-GT-TT-CGTAAGA-AAG
56 AAAAGCATT-TCTT-TCAACCGTTTTTGATA-GA-A-TCAAAGTTTGTCTCTTAAATAAGACAAA
* ** * ** * * * ** * *
612366 C-T--TTCTTCCCACTAATTTTGGTAAAGTCTATGTTCATGCCTTCAAATGTC-CC--AAACAT-
116 CATGAATAGTCACACTAA---TCCT-CATTCT-T-TT-TTGGATT---A-GGCACCATAAACTTA
** * * * * ** * * *
612424 GGATTCT-AGT-AGTGAT---C-TTCATTCA-CGTTGTGATTAGGCAATATAAA-C-TTATTCTC
170 GTCTTCTCA-TAAG-GATACACGAT-ATTGATGGTT-TGGTTTCGTAA-AAAAAGCTTTCTTC-C
** * * ** * * * **** * ***
612480 TTCC---TTAGGATAAATGATATGGATGATTTTATTTTGCATGGAAATCTTTGCTTTGCCCTATT
229 CACCAATTTTGG-TAAA-G-TCT--ATG----T-TCGTGCCT-CAAA--TGTGC-CAAACATGGA
* * ** * ** * ** *
612542 TTCCTTA-AAATCAAAGTTCATTC-C-CT-AAATAAGGCAAGTATTGATTCTCATAACAATCTCC
280 TT-C-TAGTAAT-GATCTTCATTCACGTTGTGATTAGGC-AGTA-T-AAACT--T---ATTCT-C
* * ** ** ***** * * *** *
612603 ACTCTTTAGAGATTGGGAACCA-A-AAACCCCATTCCTTT-CAATAGGACA-CGCGAT-ATTGAC
333 -CTCATTAG-GA-T--AAATGATATGGATGATTTTCTTTTGC-AT-GGAAATC-TTTTCTTTG-C
* * * * * ** ** * *
612663 GCT-TTAATGTCGC-AAGGAAAGC--ATTTCTTTCAACCGTTTTGATAGAATCAA--AGTTTAAT
389 CCTATT--T-TC-CTTA--AAATCAAAGTTCATT---CC--TTAAATA-AGGCAAGCA-TTGATT
* *** ** * * **
612722 CTC-TTA-AATAAGACAAAC--AT-GA-A-TAGTCA-
441 CTCATAACAAT-CTCCACTCTTTTCGAGATTGGGAAC
** * * * * * * * * * *
612751 CATAATCCTCATACTCTTTTGGATTAGG-CACCATAAATT-A-GTCTTCTCAAAAG-CGAACACG
1 CA-AAAACACAT--TCCTTT-CAATAGGATACGAGACATTGATG-CTT-T--AATGTCG--CAAG
* * * ** *** * * ** **
612812 ATATTGATG-GTTTGGTTTCTTCCCGCCGATTG-TA-AAGTCTACGTTCATG-C-CTCGAATGTG
56 A-A---AAGCATTT-CTTTC-AACCG-TTTTTGATAGAA-TCAAAGTT--TGTCTCTTAAATAAG
* * * ** * * *
612872 ACAAACATGGATTCTAGT-A-A-TGATCATCATTC-ACTATGTGATTAGGCACTATAAACTTATT
111 ACAAACAT-GA--ATAGTCACACTAATCCTCATTCTTTTTTG-GATTAGGCACCATAAACTTAGT
* * * * * * * * * *** * * *
612933 C-TCTTATTAGGATAAATGATATGGATGACTTT-CTTTTGCATGGAAATCTTTTCTT-GC-CCTA
172 CTTCTCATAAGGATACACGATATTGATG-GTTTGGTTTCGTAAAAAAAGC-TTTCTTCCCACCAA
** * * * * * * * * * * * *
612994 TTTTCCTTAAAATCAAAGTTCATTCCTTAAATAATG-CTAGCATTGATTCTAGTAA-CAGTCTCC
235 TTTT-GGTAAAGTCTATGTTCGTGCCTCAAAT-GTGCCAAACATGGATTCTAGTAATGA-TCTTC
* ** * * * ** * ** * ** *** *
613057 AATC-TTTTCGAGATTGGGAACCAACAAACACATTC-CTTTTGTTAGGATACGCGACAT---TG-
297 ATTCACGTT-GTGATTAGGCA-GTATAAACTTATTCTC-CTCATTAGGATAAATGATATGGATGA
** * * * ** ** * ** *
613116 TTTAATGTCGCAT-GAAAGGCTTTTC-TT-CCAACCGTTTT-GATAGAATCAAAGTTTGTCCTCT
359 TTTTCTTTTGCATGGAAA-TCTTTTCTTTGCC--CTATTTTCCTTAAAATCAAAGTTCATTC-CT
* * ** * * * * *
613177 TAAGT-AGGACAAACA-TGAATAGTCA-CACAAATC-CTCATTCTTTTTTG-GATTAGGCAC
420 TAAATAAGG-CAAGCATTG-ATTCTCATAAC-AATCTC-CACTC-TTTTCGAGATTGGGAAC
* ** * * * * ** * * *
613234 CATAAACTTACT-CTTCTC-ATAAGGATAC-ACGATATTGACGGTTTGGTTTCGTAAGAAAGGC-
1 CAAAAACACATTCCTT-TCAAT-AGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCA
* * * ** * * * * * * * *
613295 TTTATTCCCACC-AATTTGGTA-AAGTCTAAGTTCGTGCCTCATT--GT-GGGCAAACATGGATT
63 TTTCTTTCAACCGTTTTTGATAGAA-TCAAAGTT--TGTCTC-TTAAATAAGACAAACATGAATA
* * * * ** * * * * * * *
613355 GT-AGTAATGATCTTCATT-TACTTTGTGATAAGGCACTATAAACAATAGTCTCCTTATTAGGTT
124 GTCA-CACTAATCCTCATTCTTTTTTG-GATTAGGCACCATAAAC-TTAGTCTTCTCATAAGGAT
* * * * ** * * *** * * * * *
613418 AAATGATATTAATGATTTTCATTTTGCATGGAAATCTTTTCTTTGCCCA-GATTTTTCGTAAAAT
186 ACACGATATTGATG-GTTTGGTTTCGTAAAAAAAGC-TTTC-TT-CCCACCAATTTTGGTAAAGT
* * * * * * * ** * **
613482 CAATGTTCATTCCCTACATATG-G-CAAGCATTGATTC-ACATAACAATCTCCAATT--TTTTCG
247 CTATGTTC-GTGCCT-CAAATGTGCCAAACATGGATTCTA-GTAATGATCTTC-ATTCACGTT-G
* * ** * ** * * *** * * * * ** * **
613542 AGATT-GAGAACCAAAAACGCATTC-CTTTCAATAGGATACGCGACATTGACGCTTTAATGTCAC
307 TGATTAG-GCAGTATAAACTTATTCTC-CTCATTAGGATAAATGATATGGATGATTTTCTTTTGC
* * * * * * *
613605 AAGAAAAGCATTT-TTT-CCAACCATTTT-TTTATAGAATCAAAGTT--TGTCTCTTAAATAAGA
370 ATGGAAATCTTTTCTTTGCC--CTATTTTCCTTA-A-AATCAAAGTTCAT-TC-CTTAAATAAGG
* ** * * * * *
613665 CAAACA-TGAATAGTCA-CACAAATC-CTCATTCTTTTCTG-GATTAGGCAG
429 CAAGCATTG-ATTCTCATAAC-AATCTC-CACTCTTTTC-GAGATTGGGAAC
* ** * * * ** * * *
613713 CATAAACTTAGT-CTTCTC-ATAAGGATAC-ATGATATTGATGGTTTGGTTTCGTAAG-AACGC-
1 CAAAAACACATTCCTT-TCAAT-AGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCA
* * ** * * * * * ** * * *
613773 TTTCTTCCCACCAATTTTGGTA-AAGTCTATGTTCGTGC-CTCAAATGTGCCAAACATGGATTGT
63 TTTCTTTCAACCGTTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATAGT
* * * * * * ** * ** * * *
613836 -AGTAATGATCCCCATTC-ATATTGTGATTAGGCAGTATAAACTTATTCCCCTCCTTAGGATAAA
126 CA-CACTAATCCTCATTCTTTTTTG-GATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACA
* * * ** * * *** * ** * ** * * *
613899 TGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAG
189 CGATATTGATGGTTTGGTTTCGTAAAAAAAGC-TTTCTTCCCACCAATTTT-GGTAAAGTCTATG
* * * ** * * * * * * ** * **
613963 TTCATTCCTTAAATAAGGCAAGCTTTGATTCTTGTAA-CAGTCCCCACTC-TTTTCGAT-ATTAG
252 TTCGTGCCTCAAATGTGCCAAACATGGATTCTAGTAATGA-TCTTCATTCACGTT-G-TGATTAG
* ** * **** * * * ** * * * *
614025 GAACG-A-AAACACATTC-CTTTCATTAGGATCCGCGACATTGATGCTTTGATGTCGCAAGAAAA
314 GCA-GTATAAACTTATTCTC-CTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAA
* * * ** * *** *
614087 GCATTTC-TTCCAACCGT-TTTT-GATAGAATCAAAGTT--TGTCTCTTAAA-AAAATAAACA-T
377 TCTTTTCTTTGC--CC-TATTTTCCTTAAAATCAAAGTTCAT-TC-CTTAAATAAGGCAAGCATT
** * * * * **
614145 GAATAGTCA-CACAAATC-CTCATTCTTTTTG-GATTAGGCGC
437 G-ATTCTCATAAC-AATCTC-CACTCTTTTCGAGATTGGGAAC
* ** * * * * * ** * ** *
614185 CATAAACTTAAT-CTTCTC-ATAAGCATAC-ACGATATTGACGGTTTGGTTTCATAAGAACA-C-
1 CAAAAACACATTCCTT-TCAAT-AGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCA
* * ** * * * * * * * ** * * *
614245 TTTCTTCCCACCAATTTTGGTATAGTCTATGTTCGTGC-CTCAAATGTGCCAAACAATGATTCTG
63 TTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGT-CTCTTAAATAAGACAAAC-ATGA--ATA
* * * ** * * ** * * * * *
614309 GT-A-A-TGATCTTCAATCAGTTGT-GATTAGGTAGTATAAACTTATTCTCCTCCTTAGGATAAA
124 GTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACA
* * * ** * * *** * * ** * *
614370 TGATATGGATGATTTTCTTTTGCATGGAAATCTTTCTTTGCC-CC-ATTTTCCTTAAAATCAATG
189 CGATATTGATGGTTTGGTTTCGTAAAAAAAGCTTTC-TTCCCACCAATTTT-GGTAAAGTCTATG
* * * ** * * * * * * * * *** *
614433 TTCCTTCCTTAAATAAGGCAAGCTTTGATTCTTGTAA-CAGTCTGCACTCTTTTTGAT-ATTGGG
252 TTCGTGCCTCAAATGTGCCAAACATGGATTCTAGTAATGA-TCTTCATTCACGTTG-TGATTAGG
* * * ** * **** * * * ** * * * *
614496 AAGGAAAAACACATTC-CTTTCATTAGGATCCGCGACT-TTGACGCTTTGATGTTGCAAGAAAAG
315 CAGTATAAACTTATTCTC-CTCATTAGGATAAATGA-TATGGATGATTTTCTTTTGCATGGAAAT
* * * ** * * * * *
614559 CATTTC-TTCCAACCGATTTT-GATAGAATCAAAGCTT-GTCCCTTAAATAAGACAAACA-TGAG
378 CTTTTCTTTGC--CCTATTTTCCTTAAAATCAAAG-TTCATTCCTTAAATAAGGCAAGCATTGA-
** * * * * * *
614620 TAGTCA-CACTAATC-CTCATTCTATTTTG-GGTTAGGCAC
439 TTCTCATAAC-AATCTC-CACTCT-TTTCGAGATTGGGAAC
* ** * * * ** * *
614658 CATAAACGTAGT-CTTCTC-ATAAGGATAC-ATGATATTGATGGTTTGGTTTCGTAAG-AAAGC-
1 CAAAAACACATTCCTT-TCAAT-AGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCA
* * ** * * * * * ** *
614718 TTTCTTCCCACCAATTTCGGTA-AAGTCTAAGTTTGTGC-CTCAATTTTGACAAACATGGATTCT
63 TTTCTTTCAACCGTTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATAAGACAAACAT-GA--AT
** * * * * * * * * * *
614781 AGT-A-A-TTGTCTTCATTCATTGTCT-GATCAGGCACTATAAACGTATTTTTCTCATTAGGTTA
123 AGTCACACTAATCCTCATTC-TTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATA
* * * ** * * *** * ** * ** *
614842 AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC-CCTATTTTCCTTAAA-TCAA
187 CACGATATTGATGGTTTGGTTTCGTAAAAAAAGC-TTTCTTCCCACCAATTTT-GGTAAAGTCTA
* ** * * ** ** * ** * * ** * *
614905 AGTTTATTCCTTAAATAAGGTAAACATTGATTCTCA-TAACAATCTCCACTC-TTTTCGAGATTC
250 TGTTCGTGCCTCAAATGTGCCAAACATGGATTCT-AGTAATGATCTTCATTCACGTT-GTGATTA
** ** * ** * * * * * * ** * * * *
614968 GAAACCAAAAACACATTCT-TTACAATAGGATATGA-GACATTGATGCTTTAATGTCGCAAGAAA
313 GGCAGTATAAACTTATTCTCCT-CATTAGGATA-AATGATATGGATGATTTTCTTTTGCATGGAA
* * * * * *** * ** *
615031 AGCATTTCATT-CAACTGTTTTTGATAGAATCAAAGTT--TGTCTCTTAAATAAAACAAACA-TG
376 ATCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCAT-TC-CTTAAATAAGGCAAGCATTG
** * * * * *
615092 AATAGTCA-CACAAATC-CTCATTCTTTTTG-GATTAGGCAC
438 -ATTCTCATAAC-AATCTC-CACTCTTTTCGAGATTGGGAAC
* ** * * ** * * *
615131 CATAAACTTAGTT--TTCTC-ATAAGGATAC-ATGATATTGATGGTTTGGTTTTGTAA-AAAATG
1 CAAAAACACA-TTCCTT-TCAAT-AGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAA-G
* * *** * * * * * * *
615191 C-TTTCTTGCCACCAACTTTGGTA-AAGTCTATGTTCGTGC-CTCAAA-AGTGCCAAACATGGAT
61 CATTTCTTTCAACCGTTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATA-AGACAAACAT-GA-
* * ** *** * ** * ** * * *
615252 TCTAGT-A-A-TGATTTTCATTC-ACGTTGTGATCAGGCAATATGAACTTCTTCTCCTCCTTAGG
121 -ATAGTCACACTAATCCTCATTCTTTTTTG-GATTAGGCACCATAAACTTAGTCTTCTCATAAGG
* * * * ** * * *** * ** * ** *
615313 ATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC-CCGATTTTCCTTAAAAT
184 ATACACGATATTGATGGTTTGGTTTCGTAAAAAAAGC-TTTCTTCCCACCAATTTT-GGTAAAGT
* * ** * ** * * * * * * ** *
615377 CAAAGTTTATTCC-CTAAATAAGGCAAGCATTGATTCTCA-TAA-CAGTCTCCACTC-TTTTCGA
247 CTATGTTCGTGCCTC-AAATGTGCCAAACATGGATTCT-AGTAATGA-TCTTCATTCACGTT-GT
* * ** * *** * * * ** * * *
615438 GATTAGG-AATGAAAAACACATTC-CTTTCATTAGGATATGCGACATTGA-CACTTTGATGTCGT
308 GATTAGGCAGT-ATAAACTTATTCTC-CTCATTAGGATAAATGATATGGATGA-TTTTCTTTTGC
* * * * * * * *
615500 AAGAAAAGCATTTCTTT-CAACCGT-TTTT--TATAGAATCAAAGTT--GTCTCTTAATTAAGAC
370 ATGGAAATCTTTTCTTTGC--CC-TATTTTCCT-TAAAATCAAAGTTCATTC-CTTAAATAAGGC
* * * ** * * *
615559 AAACATGTGTAGTCTC---ACTAATCTTCTTTCTTTTTTG-GATTAGGCAC
430 AAGCAT-TG-ATTCTCATAAC-AATCTCCACTC-TTTTCGAGATTGGGAAC
* ** * * * * * *** * * * *
615606 CATAAACTTAGT-CTTCTC-ATA-AAGACAGACGATATTGATGGTTCGGTTTCG-TACAAAGGC-
1 CAAAAACACATTCCTT-TCAATAGGATAC-GA-GACATTGATGCTTTAATGTCGCAAGAAAAGCA
* * ** * * * * ** *
615666 TTTCTTCCCACCAATTTT-AGTA-AAGTCTAAGTTCGTGC-CTCAATTGTGACAAACATGGATTC
63 TTTCTTTCAACCGTTTTTGA-TAGAA-TCAAAGTTTGT-CTCTTAAATAAGACAAACAT-GA--A
* * * * * * * *
615728 TAGT-A-AC-AGTCTTCATTCATTTTAT-GATTAGGCACTATAAACGTATTCTTCTCATTAGGTT
122 TAGTCACACTAATCCTCATTC-TTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGAT
* * * ** * * ** * ** * ** * *
615789 AAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTCTTTGC-CCTATTTTCCTTAAAATCAA
186 ACACGATATTGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTT-GGTAAAGTCTA
* * * * ** ** * * * ** * * ** * *
615853 AGTTCATTCCTTAAATAAGGTAAGCATTGATTCCCA-TAACAATCTCCACTC-TTTTCGAGATTC
250 TGTTCGTGCCTCAAATGTGCCAAACATGGATT-CTAGTAATGATCTTCATTCACGTT-GTGATTA
** ** * * * *** * * * ** * * *
615916 GAAACCA-AAAATACATTC-CCTACAATAGGATATGCGACATTGATGCTTTAATGTCGCA-AGAA
313 GGCAGTATAAACT-TATTCTCCT-CATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAA
* * * * ** * ** *
615978 AGCATTTCATT-CAACTATTTT-GATAGAATCAAAGTT--TGTCTCTTAAATAAAACAAACA-TG
376 ATCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCAT-TC-CTTAAATAAGGCAAGCATTG
** * * * * *
616038 AATAGTCA-CACAAATC-CTCATTCTTTTTTG-GATTAGGCAC
438 -ATTCTCATAAC-AATCTC-CACTC-TTTTCGAGATTGGGAAC
* ** * * ** * * *
616078 CATAAACTTAGTT--TTCTC-ATAAGGATAC-ATGATATTGATGGTTTGGTTTTGTAA-AAAATG
1 CAAAAACACA-TTCCTT-TCAAT-AGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAA-G
* * *** * * * * * * *
616138 C-TTTCTTGCCACCAACTTTGGTA-AAGTCTATGTTCGTGC-CTCAAA-AGTGCCAAACATGGAT
61 CATTTCTTTCAACCGTTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATA-AGACAAACAT-GA-
* * ** *** ** * ** * * *
616199 TCTAGT-A-A-TGATTTTCATTC-ACGTTGTGATTAGGCAATATGAACTTCTTCTCCTCCTTAGG
121 -ATAGTCACACTAATCCTCATTCTTTTTTG-GATTAGGCACCATAAACTTAGTCTTCTCATAAGG
* * * * * ** * *** * ** ** ** *
616260 ATAAATGATATGGTTGATTTTCTTTTC-CATGGAAATCATTTCTTTGC-CCTGTTTTCCTTAAAA
184 ATACACGATATTGATG-GTTTGGTTTCGTAAAAAAAGC-TTTCTTCCCACCAATTTT-GGTAAAG
* * * * * * * * * ** * **
616323 TCAAAGTTCATTCC-CTAAATATGGCAAGCATTGATTC-ACATAACAATCTCCAATT--TTTTCG
246 TCTATGTTCGTGCCTC-AAATGTGCCAAACATGGATTCTA-GTAATGATCTTC-ATTCACGTT-G
* * ** * ** * * *** * * * ** * **
616384 AGATT-GAGAACCAAAAACGCATTC-CTTTCAATAGGATACGCGACATTGA-CACTTTAATGTCA
307 TGATTAG-GCAGTATAAACTTATTCTC-CTCATTAGGATAAATGATATGGATGA-TTTTCTTTTG
* * * * ** *
616446 CAAGAAAAGCATTTT-TTTCCAACCGT-TTTT-GATAGAATCAAAGTT--TGTCTCTTAAATAAG
369 CATGGAAATC-TTTTCTTTGC--CC-TATTTTCCTTAAAATCAAAGTTCAT-TC-CTTAAATAAG
* * ** * * * * * *
616506 ACAAACA-TGAATAGTCA-CACAAATC-CTCATTCTTCTCTG-GATTAGGTAG
428 GCAAGCATTG-ATTCTCATAAC-AATCTC-CACTCTTTTC-GAGATTGGGAAC
* ** * * * ** * * *
616555 CATAAACTTAGT-CTTCTC-ATAAGGATAC-ATGATATTGATGGTTTGGTTTCGTAAG-AACGC-
1 CAAAAACACATTCCTT-TCAAT-AGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCA
* * ** * * * * * ** * *
616615 TTTCTTCCCACCAATTTTGGTA-AAGTCTATGTTCGTGC-CTCAAATGCGCCAAACATGGATTCT
63 TTTCTTTCAACCGTTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATAAGACAAACAT-GA--AT
* * *** ** * * * *
616678 AGT-A-A-TGATCATCATTC-ACGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCTTAGGATA
123 AGTCACACTAATCCTCATTCTTTTTTG-GATTAGGCACCATAAACTTAGTCTTCTCATAAGGATA
* * * * ** * *** * ** * ** * *
616739 AATGATATGGATGATTTTCTTTTGTATGGAAATCTTTTCTTTGC-CCTATTTTCCATAACAATCA
187 CACGATATTGATGGTTTGGTTTCGTAAAAAAAGC-TTTCTTCCCACCAATTTT-GGTAA-AGTCT
* * * * ** * * * * ** * * ** **
616803 AAGTTCATTCCTTAAATAAGGCAAGCTTTGATTCTCA-TAACAATCTCCAAT-ATTTTCAAGATT
249 ATGTTCGTGCCTCAAATGTGCCAAACATGGATTCT-AGTAATGATCTTCATTCACGTT-GTGATT
* * ** * ** * * *** * * * ** * * * *
616866 GGGAACCAAAAACACATTC-CTTTCAATAGGATACGCGA-ATTGACGCTTTAATGTCGCAAGAAA
312 AGGCAGTATAAACTTATTCTC-CTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAA
* * * * * *** * * * *
616929 AGCATTTCTCT-CAACTGTTTTTGATAGAATCAAAGTTTA-TCTCTTAAATAAGACAAACA-TGA
376 ATCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCATTC-CTTAAATAAGGCAAGCATTG-
** * * * * *
616991 ATAGTCA-CACAAATC-CTCATTCTTTTTTG-GATTAGGCAC
438 ATTCTCATAAC-AATCTC-CACTC-TTTTCGAGATTGGGAAC
* ** * * * * * ** * **
617030 CATAAACTTAGT-CTTCCCATAAGGATAC-ATGATATTGATGGTTTGGTTTCTTAAG-AAAGC-T
1 CAAAAACACATTCCTTTCAAT-AGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCAT
* * * ** ** * * * * * *
617091 TCCTTCCCACCAATTTTGGCA-AAGTCTACGTTTACG-C-CTCAAATAGGCCAAACATGGATTCT
64 TTCTTTCAACCGTTTTTGATAGAA-TCAAAGTTT--GTCTCTTAAATAAGACAAACAT-GA--AT
* * *** * * ** * * * *
617153 AGT-A-A-TGATCTTCATTC-ACGTTGTGATTAGGCAGCATAAACTTATTCGCCCCCTTATGATA
123 AGTCACACTAATCCTCATTCTTTTTTG-GATTAGGCACCATAAACTTAGTCTTCTCATAAGGATA
* * * * * ** * * *** * * * ** * *
617214 AATGATATGGACGATTTTCTTTTGCATGGAAATCTTTTCCTT-GC-CCTATTTTCCTTAAAATCA
187 CACGATATTGATGGTTTGGTTTCGTAAAAAAAGC-TTT-CTTCCCACCAATTTT-GGTAAAGTCT
* ** * * ** * * * * * * * **
617277 AAGTTAATTCCTTAAATAAGGCAAGCATTGATTCTTGTAA-CAGTCTCCACTC-TTTTCGAT-AT
249 ATGTTCGTGCCTCAAATGTGCCAAACATGGATTCTAGTAATGA-TCTTCATTCACGTT-G-TGAT
* * ** * ** * **** * * * ** * * * *
617339 TGGGAACAAAAAACACATTC-CTTTCATTAGGATCCGCGACATTGATGCTTTGATGTCGCAAGAA
311 TAGGCAGTATAAACTTATTCTC-CTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGA
* * * *** * * ** *
617403 AAGCATTTC-TT--CCAATCGGTTTTGATAGAATCAAAGTT--TGCCTCTTAAATAAAACAAACA
375 AATCTTTTCTTTGCCCTAT---TTTCCTTAAAATCAAAGTTCAT-TC-CTTAAATAAGGCAAGCA
** * * * * **
617463 -TGAGTAGTCA-CACAAATC-CTCATTCTTTATTG-GATTAGGCGC
435 TTGA-TTCTCATAAC-AATCTC-CACTCTTT-TCGAGATTGGGAAC
** ** * ** * * ** * *
617505 CTTAAACTTAGT-CTTCTC-ATAAGGATACCCGATATTGATGGTTTGGTTTCGTAA-AAACAGCA
1 CAAAAACACATTCCTT-TCAAT-AGGATACGAGACATTGATGCTTTAATGTCGCAAGAAA-AGCA
* ** ** * * * * ** *
617567 -TTCTTCCCGCCAATTTTGGTA-AA--AAACTATGTCCGTGCCTCAAATGTGCCAAACATGGATT
63 TTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGT-C-T--CTTAAATAAGACAAACAT-GA--
* * * *** ** * * * *
617628 CTAGT-A-A-TGATCTTCATTC-ACGTTGTGATTAGGCAGTATAATCTTATTCTCCT-ACTTAGG
121 ATAGTCACACTAATCCTCATTCTTTTTTG-GATTAGGCACCATAAACTTAGTCTTCTCA-TAAGG
* * * * * ** * * ** ** * **
617688 ATAAAAGACATGGACT-ATTTTCTTTTGCATGGAAAA-CTATTCTTTGC-CCTATTTTCCTTAAA
184 ATACACGATATTGA-TGGTTTGGTTTCGTA-AAAAAAGCT-TTCTTCCCACCAATTTT-GGTAAA
* * * * * * ** * * * * * * **
617750 ATCAAAGTT-ATTCCTTAAATAAGGCAAGCATTGATTCTCA-TAA-CAGTCTCCACTC-TTTTCG
245 GTCTATGTTCGTGCCTCAAATGTGCCAAACATGGATTCT-AGTAATGA-TCTTCATTCACGTT-G
* * * ** * * **** * * * ** *
617811 AT-ATTGGGAACG-AAAAACACATTC-CTTTCATTCGGATCTGCGACATTGACGCA-TTGATGTT
307 -TGATTAGGCA-GTATAAACTTATTCTC-CTCATTAGGATAAATGATATGGATG-ATTTTCTTTT
* * * * * * ** * **
617872 GCAAGAAAAGCATTTC-TTCCAACCGATTTT-GATAGAATCAAAGTT--TGTCTCTTAAATAAAA
368 GCATGGAAATCTTTTCTTTGC--CCTATTTTCCTTAAAATCAAAGTTCAT-TC-CTTAAATAAGG
* ** * * * * **
617933 CAAACA-TGAGTAGTCA-CACTAATC-CTCATTCTTTTTTGA-ATTAGGCGC
429 CAAGCATTGA-TTCTCATAAC-AATCTC-CACTC-TTTTCGAGATTGGGAAC
* ** * * * * ** * *
617981 CATAAACTTAGT-CTTCTC-ATAAGCATAC-ACGATATTGATGGTTTGGTTTCGTAAG-AAAGC-
1 CAAAAACACATTCCTT-TCAAT-AGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCA
* * ** * * * * ** * *
618041 TTTCTTCCCACCAATTTTGGTA-AAGTCTATGTTCATG-C-CTCAAATGTGCCAAACATGGATTC
63 TTTCTTTCAACCGTTTTTGATAGAA-TCAAAGTT--TGTCTCTTAAATAAGACAAACAT-GA--A
* * * *** * ** * * *
618103 TAGT-A-A-TGATCTTGATTC-ACGTTGTGATTAGGAAGTATAAACTTA-TGCTCCTCCTTAGGA
122 TAGTCACACTAATCCTCATTCTTTTTTG-GATTAGGCACCATAAACTTAGT-CTTCTCATAAGGA
* * * ** * * * ** *** ** ** ** *
618163 TAAATGATATGGATAACTTT-CTTTTGCATGGAAATTTTTTCTTTGC-CTTATTTTCCTTAAAAT
185 TACACGATATTGAT-GGTTTGGTTTCGTA-AAAAAAGCTTTCTTCCCACCAATTTT-GGTAAAGT
* * * * ** * * * ** * * ** *
618226 CAATGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCA-TAACAATCTCCACTC-TTTTCGAGA
247 CTATGTTCGTGCCTCAAATGTGCCAAACATGGATTCT-AGTAATGATCTTCATTCACGTT-GTGA
* * * ** * * * * ** * * * ** * * *
618289 TTGGGAACG-AAAAACACATTC-CTTTCAATAGGATACACGGCATTGACGCTTTAATGTCGCAAG
310 TTAGGCA-GTATAAACTTATTCTC-CTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATG
* * * ** *** * *
618352 AAAAGCATTTCTTTTAACC-ATTTTTGATAGAATCAAAGTT--TGTCTCTTAAATAAGACAAGCA
373 GAAATCTTTTC-TTTGCCCTATTTTCCTTAAAATCAAAGTTCAT-TC-CTTAAATAAGGCAAGCA
* * * *
618414 -TGAATTGTCATAGA-AATC-CTCATTCTTTTTCG-GATTAGGCAC
435 TTG-ATTCTCATA-ACAATCTC-CACTC-TTTTCGAGATTGGGAAC
* ** * * * * * ** * *
618456 CATAAACTTAGT-ATTCTC-ATCAGCATAC-ACGATATTGATGGTTTGGCT-TCGTAAGAAAGGC
1 CAAAAACACATTCCTT-TCAAT-AGGATACGA-GACATTGATGCTTT-AATGTCGCAAGAAAAGC
* * ** * ** * * *** * *
618517 -TTTCTTCCTACCAATTTTGGTA-AACTGTATGTTCATG-C-CTCAAATGTCACAAACATGGATT
62 ATTTCTTTCAACCGTTTTTGATAGAA-TCAAAGTT--TGTCTCTTAAATAAGACAAACATGAATA
* * * *** ** * * * *
618578 G-CAGTAATGATCCTCATTC-ACGTTGTGATTAGGCAGTATAAACTTATTCTCCTCCTTAGGATA
124 GTCA-CACTAATCCTCATTCTTTTTTG-GATTAGGCACCATAAACTTAGTCTTCTCATAAGGATA
* * * * ** ** ** * *
618641 AATGATATGGATGATTTTCTTT--TACATGGAAA----------C-CC-ATTTTCCTTAAAATCA
187 CACGATATTGATGGTTTGGTTTCGTA-A-AAAAAGCTTTCTTCCCACCAATTTT-GGTAAAGTCT
* * * * ** * * * * ** * * ** **
618692 AAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCA-AAACAATCTCCACTC-TTTTCAAGATT
249 ATGTTCGTGCCTCAAATGTGCCAAACATGGATTCT-AGTAATGATCTTCATTCACGTT-GTGATT
* * ** * ** * * ** * * * ** * * * *
618755 GGGAACCAAAAACACATTC-CTTTCAATAGGATACGTGACATTGATGCTTTAATGTCGCAAGAAA
312 AGGCAGTATAAACTTATTCTC-CTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAA
* * ** * *
618819 AGCATTTCTTT-CAACCGT-TTTT-GATAAAATCAAAGTT--TGTCTCTTAAATAAGACAAACA-
376 ATCTTTTCTTTGC--CC-TATTTTCCTTAAAATCAAAGTTCAT-TC-CTTAAATAAGGCAAGCAT
*** * * * ** * *
618878 TGAATAGACACAAAAATC-CTCATTCTTTTTTAGATTAGGCAC
436 TG-ATTCTCATAACAATCTC-CACTCTTTTCGAGATTGGGAAC
* ** * * * * ** * **
618920 CATAAACTTAGT-CTTCTC-ATAAGCATAC-ACGATATTGATGGTTTGGTTTCATAAG-AAAGC-
1 CAAAAACACATTCCTT-TCAAT-AGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCA
* * * * * * * * * * ** * * *
618980 TTTCTTCCCACC-ATTTTGGTAGAGTCTATGTTCGAGC-CTCAAATGTGCCAAACATGGATTGT-
63 TTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTG-TCTCTTAAATAAGACAAACATGAATAGTC
* * * * *** * * * * * *
619042 AGTAATGATCTTCATTCACGTTGGGATTAGG-----T--A-TT--T-TCCTCCTTAGGATAAATG
127 A-CACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACG
* * * * *** * ** * ** * * *
619096 ATA-TGAATGATTT-CTTTTGCATGGAAATCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGT
191 ATATTG-ATGGTTTGGTTTCGTAAAAAAAGC-TTTCTTCCCACCAATTTT-GGTAAAGTCTATGT
* * ** * * * * * * * *
619158 TCAT-CCATTAAATACGGCAAACATTGATTCTCGTAAT-AGTCTCCA--CTCTTTCGGGATTGGG
253 TCGTGCC-TCAAATGTGCCAAACATGGATTCTAGTAATGA-TCTTCATTCACGTT-GTGATTAGG
* ** * ** * * * **** * * ** ** * * *
619219 AACAAAAAACACATTC-CTTTTATTGGGATACGCAATATTGATGCTTTGATGCTGCAAGAAAAGC
315 CAGTATAAACTTATTCTC-CTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATC
* ** * * * *
619283 TTTTC-TTCCAACCT-TTTTCGATAGAATCAAAGTT--TGTCTCTTAAATAAGACAAACA-TGAG
379 TTTTCTTTGC--CCTATTTTCCTTAAAATCAAAGTTCAT-TC-CTTAAATAAGGCAAGCATTGAT
* * * *
619343 TCGTCA-CACTAATC-CTCATTCTATTTCG-GATTAGGCAC
440 TC-TCATAAC-AATCTC-CACTCT-TTTCGAGATTGGGAAC
* ** * * * * * * ** * * * *
619381 CATAAA-TTAGT-CTTCCCATAAGG--ACGCATGATATTAATGGTTTGGTTTAGTAAGAAAGGC-
1 CAAAAACACATTCCTTTCAAT-AGGATACG-A-GACATTGATGCTTTAATGTCGCAAGAAAAGCA
* ** * * * * ** * * *
619441 TTTC-TTCCACCAATTTTGGTA-AAGTCTAAGTTCGTGC-C-TCAATGGTGGCAAACATGGATTG
63 TTTCTTTCAACCGTTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAAT-AAGACAAACATGAATAG
* * * * * ** * ** * * *
619502 T-AGTAATGATCTTTA-TCTACTTTGTGATTAGGCACTATAAACAAACT-TTCTTTATTAGGATA
125 TCA-CACTAATCCTCATTCTTTTTTG-GATTAGGCACCATAAACTTAGTCTTC-TCATAAGGATA
* * ** * * * ** * **
619564 -AGTGATATTGATGATTTTCTTTTGCAGAGAAAA-CTTTTCTTTGC-CCTATTTTCCTTAACA-T
187 CA-CGATATTGATGGTTTGGTTTCGTA-AAAAAAGC-TTTCTTCCCACCAATTTT-GGTAA-AGT
** * * ** * * * * * * * * ** *
619625 C-AAATTCAT-CCATTAAATAAGGCAAGCATTGATTCTCGCAA-CAGTCTCCACTC-TTTTCGAG
247 CTATGTTCGTGCC-TCAAATGTGCCAAACATGGATTCTAGTAATGA-TCTTCATTCACGTT-GTG
* * ** * ** * * * *** * * * * ** ** *
619686 ATTGGGAACCAAAAACACATTC-CTTTCAATAAGATACGCGACATTGACGCTTTGATGCTGCAAG
309 ATTAGGCAGTATAAACTTATTCTC-CTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATG
* * * * * ** *** ** * * * * * ****
619750 AAAAGCTATTCTCCT-CCATAGGATAAATGATATGGATGATA-TTCTTTTGCATGGAAATCTTTT
373 GAAATCTTTTCT-TTGCCCTA-TTTTCCT--TA-AAATCAAAGTTC-ATT-CCT-TAAAT-AAGG
** ** * * * ** * * ** ** *
619813 CTTTGCCCTGTTTTCCTTAAAATCAAAGTACTCTCCTTAAACAAGGCAAGCATTGATTCTCATAA
429 C-AAGCATTG-ATT-CTCATAA-CAATCTCCACT-CTT-TTC---G--AG-ATTG----GGA-AC
* *
619878 CAATCTCCACTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCAATAAGATACGTGACATT
1 CAA-----A--------AA----------------CACATTCCTTTCAATAGGATACGAGACATT
* *
619943 GACGCTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTTATAGAATCAAAGTTTGTCTC
37 GATGCTTTAATGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTC
* ** *
620008 TTAAATAAGACAAACATGAATAGACACAAAAATCCTCATTCTTTTTTAGATTAGGCACCATAAAC
102 TTAAATAAGACAAACATGAATAGTCACACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAAC
* * * *
620073 TTAGTCTTCTCATAAGCATACATGATATTGATGGTTTGGTTTCAT-AAGAAAGCTTTCTTCCCAC
167 TTAGTCTTCTCATAAGGATACACGATATTGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCAC
* * *
620137 C-ATTTTGGTAGAGTCTATGTTCGAGCCTCAAATGTGCCAAACATGGATTGTAGTAATGATCTTC
232 CAATTTTGGTAAAGTCTATGTTCGTGCCTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTC
* * * *
620201 ATTCACGTTGGGATTA-G--G--------TATTCTCCTCCTTAGGATAAATGATATGAATCA-TT
297 ATTCACGTTGTGATTAGGCAGTATAAACTTATTCTCCTCATTAGGATAAATGATATGGATGATTT
620254 TCTTTTGCATGGAAATCTTTTCTTTG--C------CCTTAAAATCAAAGTTCA-TCCATTAAATA
362 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCC-TTAAATA
* * * * *
620310 CGGCAAACATTGATTCTCGTAACAGTCTCCACTC-TTTCGGGATTGGGAAC
426 AGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTCGAGATTGGGAAC
* * * * * * * *
620360 AAAAAACACATTCCTTTTATTGGGATACGCA-ATATTGATGCTTTGATGCCGCAAGAAAAGCTTT
1 CAAAAACACATTCCTTTCAATAGGATACG-AGACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* * * *
620424 TCTTCCAACC-TTTTTCGATAGAATAAAAGTTTGTCTCTTAAATAAGACAAACATGAGTCGTCAC
65 TCTTTCAACCGTTTTT-GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCAC
* * * * ** *
620488 ACTAATCCTCATTCTATTTCGGATTAGGCACCATAAAATTAGTCTTCCCATAAGGACGCATGATA
129 ACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATA
* * * * *
620553 TTAATGGTTTGGTTTAGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGC
194 TTGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
* * * * *
620618 CTC-AATGGTGGCAAACATGGATTGTAGTAATGATCTTTA-TCTACTTTGTGATTAGGCACTATA
259 CTCAAAT-GTGCCAAACATGGATTCTAGTAATGATCTTCATTC-ACGTTGTGATTAGGCAGTATA
** * * * * * *
620681 AACAAACTT-TCTTTATTAGGATAAGTGATATTGTTGATTTTCTTTTGCA-GAGAAAACTTTTCT
322 AACTTA-TTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATG-GAAATCTTTTCT
* **
620744 TTGCCCTATTTTCCTTAACATCAAA-TTCA-TCCATTAAATAAGGCAAGCATTGATTCTCGCAAC
385 TTGCCCTATTTTCCTTAAAATCAAAGTTCATTCC-TTAAATAAGGCAAGCATTGATTCTCATAAC
*
620807 AGTCTCCACTCTTTTCGAGATTGGGAAC
449 AATCTCCACTCTTTTCGAGATTGGGAAC
* * * * * *
620835 CAAAAACACATTCCTTTCAATAAGATACGCGACATTGACGCTTTGATGCCGCAAGAAAAGCTTTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * ** * *
620900 CTTCCAACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGATGAATATGAATAGTCACAA
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * *
620965 AAATCCTTATTCCTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAT-AGGCATACACGATAT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGG-ATACACGATAT
* * *
621029 TGATGGTTTGGTTTCGT-AAGAAAGCTTTCTTCCCAGCAATTTTGGTAAAATCTATGTTCGTGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
*
621093 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTT-TTTCACGTTGTGATTAGGCAGTATAAAC
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
*
621157 TTATTCTCCTCCA-TAGGATAAATGATATGGATGATATTCTGTTT-CATGGAAATCTTTTCTTT-
325 TTATTCTCCT-CATTAGGATAAATGATATGGATGATTTTCT-TTTGCATGGAAATCTTTTCTTTG
* *
621219 CCTCTATTTTCCTTAAAATCAAAGTAC-TCTCCTTAAACAAGGCAAGCATTGATTCTCATAACAA
388 CC-CTATTTTCCTTAAAATCAAAGTTCAT-TCCTTAAATAAGGCAAGCATTGATTCTCATAACAA
621283 TCTCCACTCTTTTCGAGATTGGGAAC
451 TCTCCACTCTTTTCGAGATTGGGAAC
* * *
621309 CAAAAACACATTCCTTTCAATAAGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * * *
621374 CTTTCAACCGTTTTTTATAGAATCCAAGTTTGTCTCTTAAATAAGACAAACATGAATAGACACAA
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * *
621439 AAATCCTCATTCTTCTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGCATACACGATATT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATT
* * * * *
621504 GATGGTTTGGTTTCGTAAGAAACGCTTTTTTCCCACCAATTTTGGTAAAGTCTATGTACATGCCT
196 GATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCT
* * * * *
621569 TAAATGTGACAAACATGGATTGTAGTAATGATCCTCATTCACGTTGTGATTCGGCAGTATAAACT
261 CAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAACT
* * *
621634 TATTCTCCTCCTTAGGATAAATGAGATGGATGATTTTCTTTTGCATGGAAATTTTTTCTTTGCCC
326 TATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
621699 TATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCC
391 TATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCC
* *
621764 ACTGTTTTCGAGATCGGGAAC
456 ACTCTTTTCGAGATTGGGAAC
* *
621785 CAAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * *
621850 CTTTCAACCATTTTTGATAGAGTCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGACACAC
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * * *
621915 AAATCCTCATTCTTTTTTAGATTAGGCACCATAAACTTAGTCTTCTTATAAGCG-TACACGATGT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAG-GATACACGATAT
* * *
621979 TGATGGTTTGGTTTCAT-AAGAAAGCTTTTTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
* * * * *
622043 TCAAATGTGCCAAACATGGATTGTGGTAATGATCTTTA-TCTACTTTGTGATTAGGCACTATAAA
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTC-ACGTTGTGATTAGGCAGTATAAA
** * * * * *
622107 CAAACTT-TCTTTATTAGGATAAGTGATATTGATGATTTTCTTTTGCA-GAGAAAACTTTTCTTT
324 CTTA-TTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATG-GAAATCTTTTCTTT
* ** *
622170 GCCCTATTTTCCTTAACATCAAA-TTCA-TCCATTAAATAAGGCAAGCATTGATTCTCGCAACAG
387 GCCCTATTTTCCTTAAAATCAAAGTTCATTCC-TTAAATAAGGCAAGCATTGATTCTCATAACAA
622233 TCTCCACTCTTTTCGAGATTGGGAAC
451 TCTCCACTCTTTTCGAGATTGGGAAC
* * *
622259 CAAAAACACATTCCTTTCAATAGGATACGCA-ACATTGACGCTTTGATGTCGCAAGAAAAGCTTT
1 CAAAAACACATTCCTTTCAATAGGATACG-AGACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* * *
622323 TCTTCCAACCGTTTTTTATAGAATCAAAGTTTCTCTCTTAAATAAGACAAACATGAATAGTCACA
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
* * * *
622388 CAAATCCTTATTCCTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAT-AGGCATACACGATG
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGG-ATACACGATA
* * *
622452 TTGATGGTTTGGTTTCAT-AAGAAAGCTTTTTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
194 TTGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
* * * * *
622516 CTCAAATGTGCCAAACATGGATTGTGGTAATGATCTTTA-TCTACTTTGTGATTAGGCACTATAA
259 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTC-ACGTTGTGATTAGGCAGTATAA
** * * * * *
622580 ACAAACTT-TCTTTATTAGGATAAGTGATATTGATGATTTTCTTTTGCA-GAGAAAACTTTTCTT
323 ACTTA-TTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATG-GAAATCTTTTCTT
* **
622643 TGCCCTATTTTCCTTAACATCAAA-TTCA-TCCATTAAATAAGGCAAGCATTGATTCTCGCAACA
386 TGCCCTATTTTCCTTAAAATCAAAGTTCATTCC-TTAAATAAGGCAAGCATTGATTCTCATAACA
*
622706 GTCTCCACTCTTTTCGAGATTGGGAAC
450 ATCTCCACTCTTTTCGAGATTGGGAAC
* * * *
622733 CAAAAACACATTCCTTTCAATAAGATACGCGACATTGACGCTTTAATGTCGCAAGGAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* *
622798 CTTTCAACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCA-AA
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * * * * *
622862 TAAATCCTCATACTCTTTTGGATTAGGCACCATCAACTTAGTCTTCTCAAAAGCAAACACGATAT
131 T-AATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
* * * *
622927 TGATGGTTTGGTTTCGT-AAGAAAGCTTTCTTCCCACCAATTTCGATAAAGTCTATGTTCATGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
*
622991 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCAATCACGTTGTGATTAGGCAGTATAAAC
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
* *
623056 TTATTCT-CTTATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAGTCTTTTCTTTGCC
325 TTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
*
623120 CTATTTTCCTTAAAATCAAAGTTCATTCCTT--AT-A-GCAAGCATTGATTCTCATAACAGTCTC
390 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
*
623181 CACTCTTCTT-TAGATTGGGAAC
455 CACTCTT-TTCGAGATTGGGAAC
* * ** * *
623203 CAAAAACACATTCCTTTCATTAGGATACGCGACATTGACACTTTAATGTCGCATGAAAATCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * * * * *
623268 CTTTGAACCGTTTTTTATAGAATCAACGTTTGTCTCTTAAATAAGGCAAAGATGAATAGTCACAA
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * *
623333 AAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCATCCCATAAGGATACACGATATT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATT
* * * * * *
623398 GATGGTTTGGTTTGGTAAGAAAGGCTTTATTCCCACCAATTTTGGTAAAGTTTAAT-ATCGTGCC
196 GATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCT-ATGTTCGTGCC
* * ** * * * * * * *
623462 TCAATTGTGGCAAACATGCTTTGTAG-AATGTTTTTCATTTACTTTGTGATAAGGC-GCTACAAA
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAG-TATAAA
** * * * *
623525 CAAAGTCTCCTTATTAGGATAAATGATATGGATGATTTCCTTTTGCATGAAAATCTTTTCTTTGC
324 CTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
623590 CCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCT
389 CCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCT
*
623655 CCACTCTTTTCGAGATTAGGAAC
454 CCACTCTTTTCGAGATTGGGAAC
* * * *
623678 AAAAAACACATTCCTTTTAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* *
623743 CTTTCAACCGTTTTTCATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACCT-AAGTAGTCACA
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA-TAGTCACA
* * * * *
623807 CAAATTCTCATTCTTTTTTGGATTAGGCACCCTAAACTTAGTCTTATCATAAGCATACACGATAT
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
* *
623872 TGATGGTTTGGTTTCGT--AAGAA-CTTTCTTCCCACCAATTTTGGTAAAGCCTATGTTCGTGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
* ** *
623934 TCAAATGTGCCAAGCATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGTGGTATAAAT
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
* * * * *
623999 TTATTCTCCTCCTCAGGATAAATGATATGGGTGATTTTCTTTTGCATGTAAATCTTTTTTTTGCC
325 TTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* ** *
624064 CTATTTTCCTTAAAATAAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTC
390 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
624129 CACTCTTTTCGAGATTGGGAAC
455 CACTCTTTTCGAGATTGGGAAC
* * **
624151 AAAAAACACATTCATTTCAATAGGATAC-ACGACATTGACACTTTAATGTCGCAAGAAAAGCATT
1 CAAAAACACATTCCTTTCAATAGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* * * * * * *
624215 TATTCCAACCGTTTTTGATAGAATCAAAGTGTGTCTCTCAAATAAGACAGACATGAGTTGTCACA
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
*
624280 CTAATCCTCATTCTTTTTTGAATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
* * * *
624345 TGATGGTTTGGTTTTGTAAAAAATGCTTTCTTGCCACCAACTTTGGTAAAGTCTATGTTCGTGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
*
624410 TCAAAAGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
* * *
624475 TTATTCTCCTCCTTAGGATAAATGATATGGATGATTTTCTTTTGCGTGGAAATCCTTTCTTTGCC
325 TTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* * * * *
624540 TTATTTTCCTTAAAATCAAAGTTCAATCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTC
390 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
* * *
624605 CACTCTTTTTGAGCTTGGGAAT
455 CACTCTTTTCGAGATTGGGAAC
* * * * * * *
624627 GAAAAACACAATCCTTTCATTAGGATATGCGACACTGATGCTTTGATGTCGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * * * *
624692 CTTCCAACCATTTTTGATAGAATCAAAGTTTGTCTTTTAAATAAGACAAACATTAGTAGTCACAC
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * * *
624757 TAATCTTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAAAAGCATGCACGATATT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATT
*
624822 GATGGTTTGGTTTCGT-AAGAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCT
196 GATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCT
* * *
624886 CAAATGTGCCAAACATGGATTCTAGAAATGATCTTCATTCACATTGTGATTAGGCAGAATAAACT
261 CAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAACT
*
624951 TATTCT-CTTATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
326 TATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
* * * *
625015 TATTTTCCTGAAAATCAAACTTCATTCTTTAAATAAGGCAAGCATTAATTCTCATAACAATCTCC
391 TATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCC
* **
625080 ACTCTTTTTGAGATTCAGAAC
456 ACTCTTTTCGAGATTGGGAAC
*
625101 CAAAAACACATTCCTTTC-ATCAGGATACGCA-ACATTGACGCTTTAATGTCGCAAGAAAAGCAT
1 CAAAAACACATTCCTTTCAAT-AGGATACG-AGACATTGATGCTTTAATGTCGCAAGAAAAGCAT
625164 TTCTTTCAACCG-TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCAC
64 TTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCAC
*
625228 ACAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATA
129 ACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATA
* *
625293 TTGATGGTTTGGTTTTGTAAAAAAAGCTTTCTTGCCACCAATTTTGGTAAAGTCTATGTTCGTGC
194 TTGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
*
625358 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATGAA
259 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAA
* * * *
625423 CTTCTTCTCCTTC-TTAGGATAAATAATATGGATGGTTTTCTTTTGCACGGAAATCTTTTCTTTG
324 CTTATTCTCC-TCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
* * **
625487 CCCTATATTCCTTAAAATCAAAGTTTATTCCCAAAATAAGGCAAGCATTGATTCTCATAACAATC
388 CCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATC
* *
625552 TCCACTCTTTTCAAGATTAGGAAC
453 TCCACTCTTTTCGAGATTGGGAAC
* * *
625576 CAAAAACCCATTCCTTTCAATAGGATAC-ACGACATTGAAGCTTTAATGTCGCAAGAAAAGTATT
1 CAAAAACACATTCCTTTCAATAGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* * * **
625640 TCTTTCAACCGTTTTTAATGGAATCAAAGTTTGTCTCATAAATAAGACAAACATGCGTAGTCACA
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
*
625705 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGAAAT
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
** * * * * * *
625770 TGATCATTTGGTTTTGTAAGAAATGCTTTCTTCCCGCCAATTTTGGTAAAGTCTACGTTCGTGTC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
* * * * *
625835 TCAAATGTGACAAACATGGATTCTAGTAATAATCATCATTCACTTTGTGATTAGGCACTATAAAC
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
* * *
625900 TTATTCT-CTTATTAGGATAAATGATATGGATGATTTTCTTCTGCATGGAAATCTTTTCTTTACC
325 TTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* *
625964 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCTAGCATTGATTCTCATAACAGTCTC
390 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
626029 CACTCTTTTCGAGATTGGGAAC
455 CACTCTTTTCGAGATTGGGAAC
* * * * * * * *
626051 CAAAAAACACATTCCTTTCATTAGGATACGCGACACTGATGCTTTAATGGCGTATGAAAGGCTTT
1 C-AAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* * * * *
626116 TCTTCCAACCGTTTTTAATAGAAGCAAAGTTTGTCTCTTAAATAAGACAAGCAAGAATAGTCACA
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
** *
626181 AAAATCCTCATTCTTTTTTGGATTAGGCACCCTAAACTTAGTCTTCTCA-AAGGCATACACGATA
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGG-ATACACGATA
* ** ** * * * *
626245 TTGATGATTTGGTTTTATAGGAAAGGCATT-TTCCCACCAAATTTGGTAAAGTCTGA-GTTCGTA
194 TTGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCT-ATGTTCGTG
* * ** *
626308 CCTC-AATAGTGACAAACATGGATTCTAGTAATGGTCTTCATTCATTTTGTGATAAGGC-GCTAT
258 CCTCAAAT-GTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAG-TAT
* * * *
626371 AAACGTATTCTTCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCACGGAAATCTTTTCTT
321 AAACTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* * * * *
626436 TGCCTTATTTTCCTTAAAAATCAAATTTAATTCCTTAAATAA-GCAAGCTTTGATTCCCATAACA
386 TGCCCTATTTTCCTT-AAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACA
* *
626500 GTCTCCACTCTTTTCAAGATTGGGAAC
450 ATCTCCACTCTTTTCGAGATTGGGAAC
* * * ** ** *
626527 CAAAAACACATTCC-TTCTATTGGGATA-TATGACATTGGCGCTTTGGTGTCACAAGAAAAGCAT
1 CAAAAACACATTCCTTTC-AATAGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCAT
* * ** *
626590 TTC-TCCAACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGATTAACATGAATAGTCAT
64 TTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCAC
* * * *
626654 ACTAATCCTTATT-TTTTTAGGATTAGGCACCAGAAACTTAGTCTTCTCATAAGGATACATGATA
129 ACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATA
* * * * * * * * *
626718 TTGATGCTTTGGCTTCGCAAGAAAGGCTTTCTT-CCGCCAATTTTTGTAAACTCTAAGTTCGTGC
194 TTGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
* * ** * *
626782 CTCAATTGTGACAAACATGGATTCTAGT-ATAGAT-TTCCATTCATTTTGTGATTAGTCACTATA
259 CTCAAATGTGCCAAACATGGATTCTAGTAAT-GATCTT-CATTCACGTTGTGATTAGGCAGTATA
*** * * ** *
626845 AAAACA-T-T-CTCATTAGTATAAATGGTATGGATGATTTTCTTTTGCATCAAAATCGTTTCTTT
322 AACTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
** * ** *
626907 GCTGTATGTTCCTTAAAATCAAAGTT-ATTCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGT
387 GCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAAT
626971 CTCCAC-CATTTTCGAGATTGGGAAC
452 CTCCACTC-TTTTCGAGATTGGGAAC
* * * * * * ** *
626996 TAAAAACACATTCCTTTCATTAGTATATGTGACTTTGATGCTTTGGTGTTGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * * * * * * *
627061 TTTTCAACCATTTTTTATAGAATTAAAGTTTGTCTCTTAAAAAAGGCAAACATAAATAGTCATAC
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * * * *
627126 TAATCCTTATT-TTTTTAGGATTACGCACCATAAACTTATTCTTCTCATAAGGATACATGATATT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATT
* * * * * ** * *
627190 GATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGTTCGTGGCT
196 GATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCT
* * * *
627255 CAATTGTGGCAAACATGGATTCTAGTATTGATCTTCAATCAC----T-A-T----A--A-AAAC-
261 CAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAACT
* * *
627306 -A-T-T-CTCATTAGGATAAATGATATGGATGATTTTCTTTTACATGGAAATCTTTTCTTTTCCT
326 TATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
* * * * * *
627367 TATTTTTCTTAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTCACTCTCATAACAGTCTCC
391 TATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCC
*
627432 ATTCTTTTC-ATGATTGGGAAC
456 ACTCTTTTCGA-GATTGGGAAC
* * * ***
627453 CAAAAACACATTCCTTTCATTAGGATGC-ACGACATTAATGCTTTGGGGTCGCAAGAAAAGCATT
1 CAAAAACACATTCCTTTCAATAGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* * * *
627517 TCTTTCAACCTTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATA
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
* * * ** * * * *
627582 CTAATCCCCATTATTTTTAGGATTAGGCACCATAAACCAAATCTTCTAATAAGGATACACCATAC
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
* * * * * * *
627647 TGA-AGTATTGGTTTCATAAGAAAGGCTTTCTTGCCACCAATTTTCGTAAAGTCTAAGTTCGT-C
195 TGATGGT-TTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
* * * * ** * *
627710 CTCAAATGCGACAAACATGGGTTCTAGT-ATAGATCTTCATTAATTTTGTGATTAGTCACTATAA
259 CTCAAATGTGCCAAACATGGATTCTAGTAAT-GATCTTCATTCACGTTGTGATTAGGCAGTATAA
*** * *
627774 AAACATTCTCCTCATTAGGATAAATGACATGGAAGATTTTCTTTTGCATGGAAATCTTTTCTTTG
323 ACTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
* * * *** *
627839 CCCTATTTTCCTTAAAATCAATGTTCATCCCTTAAATAAGGTAAGCATTGATTCTTGCAACAGTC
388 CCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATC
*
627904 TCCATTCTTTTC-ATGATTGGGAAC
453 TCCACTCTTTTCGA-GATTGGGAAC
* *** *
627928 CAAAAACACATTCCTTTCATTAGGATAC-ACGACATTGATGCTTTGGGGTTGCAAGAAAAGCATT
1 CAAAAACACATTCCTTTCAATAGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* * *
627992 TCTTTCAACCGTTTTTAATAGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAATAGTCATA
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
* * ** * *
628057 CTAATCCTAATT-TTTGTAAGATTAGGCACAATAAACTTAGTCTTCTCATAAGGATACACAATAT
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
* * * * * * *
628121 GGATGCTTTTGTTTCGTAAAAAAGGCTTTCTTCCCACCAAATTTGGTAAAGTCTATGTTCATGTC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
* * *
628186 TCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCACTATGAAC
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
* * * * * *
628251 ATATTCTCCTTATTAAGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCT
325 TTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* * * * * *
628316 CTATTTTCCTTAAAATCAAAATTAATACCTTAAATAAGGCAAGCATTGATTTTCGTAACAGTCTC
390 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
*
628381 CACTCTTTTCGAGATTGGGAAT
455 CACTCTTTTCGAGATTGGGAAC
* * * * * *
628403 GAAAAACACATTCATTTCATTAGGATAC-ATGACATTGACGCTTTGATGTCGCAAGACAAGCATT
1 CAAAAACACATTCCTTTCAATAGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* * * * *
628467 TCTTCCAACCGATTTTGATAGAATCAAAGTTTGTCCCTTTAATAAGACAAACATGAGTAGTCACA
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
* * *
628532 CTAATCCTCATTCTATTTTGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATAT
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
* * * **
628597 TGATGGTTTGGTTTCGT-AAGAAAGCTTTCTTCCCACCAATTTCGATAAAGTCTCA-GTTCACGC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCT-ATGTTCGTGC
* * * * ** * *
628660 CTCTATTGTGACAAACATGGATTCCAGTAATTG-TCTTCATTCATTTTGCGATTAGGCACTATAA
259 CTCAAATGTGCCAAACATGGATTCTAGTAA-TGATCTTCATTCACGTTGTGATTAGGCAGTATAA
* * * * *
628724 ACGTATTTTTCTCATTAGGTTAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
323 ACTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
* * *
628789 CCCTATTTTCCTTAAAATCAAAGTTTATTCCTTAAATAAGGTAAACATTGATTCTCATAACAATC
388 CCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATC
* *
628854 TCCACTCTTTTCGAGATTCGAAAC
453 TCCACTCTTTTCGAGATTGGGAAC
* *
628878 CAAAAACACATT-CTTTACAATAGGATATGAGACATTGATGCTTTAATGTTGCAAGAAAAGCATT
1 CAAAAACACATTCCTTT-CAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* *
628942 TCTTTCAACCGTTTTTGATAGAGTCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTCACA
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
*
629007 CAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
* * *
629072 TGATGGTTTGATTTCGTAAAAAAAGCTTTCTTGCCACCAACTTTGGTAAAGTCTATGTTCGTGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
* *
629137 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTTATTCACGTTGTGATTAGGCAGTATGAAC
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
* * * *
629202 TTCTTCTCCTCCTTAGGATAAATGATATGGATGATTTTTTTTTGCATGAAAATCTTTTCTTTGCC
325 TTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* * ** * * *
629267 CTATATTCCTTAAAATCAAAGTTTATTCCCAAAATAAGGCAGGCATTGATTCTCATAATACTCTC
390 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
* *
629332 CACTATTCTCGAGATTGGGAAC
455 CACTCTTTTCGAGATTGGGAAC
* * *
629354 CAAAAACACATTCCTTTCAATAGGATACGTGACATTAATGCTTTAATGTCGGAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * *
629419 CTTTCAACCGTTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAGTAGTCACAC
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
*
629484 TAATCCTCATTCTTTTTTTGGATTAGGAACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
131 TAATCCTCATTC-TTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
* * * * * ** * * * *
629549 TGATCGTTTAGTTTTGTAAGAAATGCTTTCTTCCTGCCAGTTTTGGTAAAATCTACGTTCATGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
* * * * * *
629614 TTAAATGTGACAAACATTGATTCTAGTGATGATCATCATTCACTTTGTGATTAGGCAGTATAAAC
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
* *
629679 TTATTCT-CTTATTAGGATAAATGATATGGATGATTTTCTTTTGCACGGAAATCTTTTCTTTGCC
325 TTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
*
629743 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGTAAGCATTGATTCTCATAACAATCTC
390 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
*
629808 TACTCTTTTCGAGATTGGGAAC
455 CACTCTTTTCGAGATTGGGAAC
* *
629830 CAAAAACACATTCCTTTC-ATCAGGATACGTGACATTGACGCTTTAATGTCGCAAGAAAAGCATT
1 CAAAAACACATTCCTTTCAAT-AGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATT
*
629894 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCACA
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
* * * * *
629959 CAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACATAGTCTTCCCAAAAGCATACACGATAT
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
* * * *
630024 TGATGGTTTGGTTTCGT-AAGAAAGCTTTTTTCCCACCAATATTGGTAAAGTCTATGTTTGTGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
630088 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
* *
630153 TTATTCTCCTCCTTAGGGTAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
325 TTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* *
630218 CTATTTTCCTTAAAATC-AAGTTCATTCCATAAATAAGGCAAGCATTTATTCTCATAACAATCTC
390 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
*
630282 CACTCTTCTCGAGATTGGGAAC
455 CACTCTTTTCGAGATTGGGAAC
* * * *
630304 CAAAAACACATTCCTTTCATTAGGATTCGCGACATTGACGCTTTAATGTCGCAAGAAAAG-ATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* *
630368 CTTTCAACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCACAC
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* *
630433 TAATCCTCATTTTGTTTTTTGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
131 TAATCCTCATTCT-TTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
* * * * * **
630498 TGATTGTTTGGTTTTGTAAGAAATGCTTTCTTCCCGCCAATTTTGGTAAAGTCTACATTCGTGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
* * * * *
630563 TCAAATGTGACAAACATGGATTCTAGTAATGATCATCTTTCACTTTGTGATTAGGCATTATAAAC
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
* * * * * * *
630628 TTATTCT-CTTATTAGGATAAATAATATGGACGATTTGCTTTTGCACGAAAATCTTTGCTTTGCC
325 TTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* * * *
630692 CTATTTTCCTTAAAATCAAAGTTCTTTCCTTAAATAAGGCTAGCATTGATTCTCGTAACAGTCTC
390 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
630757 CACTCTTTTCGAGATTGGGAAC
455 CACTCTTTTCGAGATTGGGAAC
* * * * * **
630779 CAAAAAGACATTCCTTTCATTAGGATACGCGACATGGATGCTTTAATGTCGCATGAATGGC-TTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* *
630843 TTTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCACA
66 CTTT-CAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
* * * * * * * *
630908 CAAATCCTCATTCTTTTTTGGAGTAGGCACAACAAGCTTTGTCTTCTCAAAAGCATACACGATAT
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
* * *
630973 TGATGGTTTGGTTTCGT-AAGAAAGCTTTCTTCCCACTAATTTTGGTAAAGTCTATGTTCATGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
* *
631037 TCAAATGTCCCAAACATGGATTCTAGTAGTGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
* * *
631102 TTATTCTCCTCCTTAGGATAAATGATATGGATGATTTTATTTTGCATGGAAATCTTTGCTTTGCC
325 TTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* * * *
631167 CTATTCTCCTTAAAATCAAAGTTCAATCCCTAAATAAGGCAAGTATTGATTCTCATAACAATCTC
390 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
*
631232 CACTCTTTTAGAGATTGGGAAC
455 CACTCTTTTCGAGATTGGGAAC
* * * * *
631254 CAAAAACCCCATTCCTTTCAATAGGACACGCGACATTGACGCTTTAATGTCGCAAGGAAAGCATT
1 CAAAAA-CACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* *
631319 TCTTTCAACCGGTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCACA
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
* * * * * *
631384 -TAAATCCTCATACTCTTTTGGATTAGGCACCATAAAATTAGTCTTCTCAAAAGCAAACACGATA
130 CT-AATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATA
* * * * *
631448 TTGA-----TGGTTT-G--------G-TTTCTTCCCGCCGA--TT-ATAAAGTCTACGTTCATGC
194 TTGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
* * * *
631495 CTCGAATGTGACAAACATGGATTCTAGTAATGATCATCATTCAC-TATGTGATTAGGCACTATAA
259 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGT-TGTGATTAGGCAGTATAA
* *
631559 ACTTATTCT-CTTATTAGGATAAATGATATGGATGACTTTCTTTTGCATGGAAATCTTTTC-TTG
323 ACTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
* * *
631622 CCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAATGCTAGCATTGATTCT-AGTAACAGT
388 CCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCA-TAACAAT
*
631686 CTCCAATCTTTTCGAGATTGGGAAC
452 CTCCACTCTTTTCGAGATTGGGAAC
*** * * * *
631711 CAACAAACACATTCCTTTTGTTAGGATACGCGACA-T--TG-TTTAATGTCGCATGAAAGGCTTT
1 CAA-AAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* * *
631772 TCTTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAGTAGGACAAACATGAATAGTCACA
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
* *
631837 CAAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTACTCTTCTCATAAGGATACACGATAT
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
* * * * * *
631902 TGACGGTTTGGTTTCGTAAGAAAGGCTTTATTCCCCCCAATTTTGGTAAAGTCTAAGTTCGTGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
* *
631967 TCAAATGCGCCAAACATGGATTCTAGTAATGATCATCATTCACGTTGTGATTAGGCAGTATAAAC
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
* *
632032 TTATTCTCCTCCTTAGGCTAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
325 TTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* * *
632097 CTATTTTCCATAAAATCAAAGTAC-TCTCCTTAAACAAGGCAAGCATTGATTCTCATAACAATCT
390 CTATTTTCCTTAAAATCAAAGTTCAT-TCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCT
* * *
632161 CCAATATTTTCAAGATTGGGAAC
454 CCACTCTTTTCGAGATTGGGAAC
* *
632184 CAAAAACACATTCCTTTCAATAGGATACGCGA-ATTGACGCTTTAATGTCGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * * *
632248 CTCTCAACTGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCACAG
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * *
632313 AAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCCCATAAGGATACATGATATT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATT
* * * * * * *
632378 GATGGTTTGGTTTC-TTAAGAAAGCTTCCTTCCCACCAATTTTGGCAAAGTCTACGTTTGCGCCT
196 GATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCT
** *
632442 CAAATAAGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGCATAAACT
261 CAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAACT
* * * * *
632507 TATT-TGCCCCCTTATGATAAATGATATGGACGATTTTCTTTTGCATGGAAATTTTTTCTTTGCC
326 TATTCT-CCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* *
632571 TTATTTTCCTTAAAATCAATGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
390 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
632636 CACTCTTTTCGAGATTGGGAAC
455 CACTCTTTTCGAGATTGGGAAC
* * *
632658 GAAAAACACATTCCTTTCAATAGGATAC-ACGGCATTGACGCTTTAATGTCGCAAGAAAAGCATT
1 CAAAAACACATTCCTTTCAATAGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* * * * *
632722 TCTTTTAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAGCATGAATTGTCATA
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
** * * * *
632787 GAAATCCTCATTCTTTTTCGGATTAGGCACCATAAACTTAGTATTCTCATCAGCATACACGATAT
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
* * * * * * *
632852 TGATGGTTTGGCTTCGTAAGAAAGGCTTTCTTCCTACCAATTTTGGTAAACTGTATGTTCATGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
* *
632917 TCAAATGT-CACAAATATGGATTGC-AGTAATGATCCTCATTCACGTTGTGATTAGGCAGTATAA
260 TCAAATGTGC-CAAACATGGATT-CTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAA
* *
632980 ACTTATTCTCCTCCTTAGGATAAATGATATGGATGATTTTCTTTTACATGGAAA------C----
323 ACTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
*
633035 CCC-ATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCAAAACAATC
388 CCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATC
*
633099 TCCACTCTTTTCAAGATTGGGAAC
453 TCCACTCTTTTCGAGATTGGGAAC
*
633123 CAAAAACACATTCCTTTCAATAGGATACGTGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* *
633188 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGACACAA
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * *
633253 AAATCCTCATTCTTTTTTAGATTAGGCACCATAAACTTAGTCTTCTCATAAGCATACACGATATT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATT
* * * *
633318 GATGGTTTGGTTTCAT-AAGAAAGCTTTCTTCCCACC-ATTTTGGTAGAGTCTATGTTCGAGCCT
196 GATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCT
* *
633381 CAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGGGATTAGGCAGTGTAAACT
261 CAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAACT
* *
633446 TATTCTCCTCCTTAGGATAAATGATATGAATGA-TTTCTTTTGCATGGAAATCTTTTCTTTGCCC
326 TATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
* * * *
633510 TATTTTCCTTAAAATCAAAGTTCA-TCCATTAAATACGGCAAACATTGATTCTCGTAACAGTCTC
391 TATTTTCCTTAAAATCAAAGTTCATTCC-TTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
*
633574 CACTCTTTTCGGGATTGGGAAC
455 CACTCTTTTCGAGATTGGGAAC
* * * * * * * * *
633596 AAAAAACACATTCTTTTTATTGGGATACGCA-ATATTGATGCTTTGATGCCGCAAGAAAAGCTTT
1 CAAAAACACATTCCTTTCAATAGGATACG-AGACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* *
633660 TCTTCCAACC-TTTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCAC
65 TCTTTCAACCGTTTTT-GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCAC
* * * * ** *
633724 ACTAATCCTCATTCTATTTCGGATTAGGCACCATAAAATTAGTCTTCCCATAAGGACGCATGATA
129 ACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATA
* * * * * *
633789 TTAACGGTTTGGTTTAGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGC
194 TTGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
* * * * * *
633854 CTCAATTGTGGCAAACATGGATTGTAGTAATGATCTTTA-TCTACTTTGTGATTAGGCACTATAA
259 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTC-ACGTTGTGATTAGGCAGTATAA
** * * * * *
633918 ACAAACTT-TCTTTATTAGGATAAGTGATATTGATGATTTTCTTTTGCA-GAGAAAACTTTTCTT
323 ACTTA-TTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATG-GAAATCTTTTCTT
* **
633981 TGCCCTATTTTCCTTAACATCAAA-TTCA-TCCATTAAATAAGGCAAGCATTGATTCTCGCAACA
386 TGCCCTATTTTCCTTAAAATCAAAGTTCATTCC-TTAAATAAGGCAAGCATTGATTCTCATAACA
*
634044 GTCTCCACTCTTTTCGAGATTGGGAAC
450 ATCTCCACTCTTTTCGAGATTGGGAAC
* * * * * *
634071 CAAAAACACATTCCTTTCAATAAGATACGCGACATTGAGGCTTTGATGCCGCAAGAAAAGCTTTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * * ** * * *
634136 CTTCCAACCGTTTTTTATAGAATCAAAGTTTGTCTCCTAAATAAGATGAATATGAATAGTCATAA
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * * *
634201 AAATCCTTAATCCTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAT-AGGCATACACGATAT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGG-ATACACGATAT
* *
634265 TGATGGTTTGGTTTCGT-AAGAAAGCTTTCTTCCCAGCAATTTTGGTAAAGTCTATGTTCGTGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
* *
634329 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTT-TTTCACGTTGTGATTAGGCAATATAAAC
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
* *
634393 TTATTCTCCTCCA-TAGGATAAATTATATGGATGATATTCTTTTGCATGGAAATCTTTTCTTTGC
325 TTATTCTCCT-CATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * * *
634457 CATGTTTTCCTT-AAATCAAAGTAC-TCTCCTTAAACAAGGCAAGCATTGATTCTCATAACAATC
389 CCTATTTTCCTTAAAATCAAAGTTCAT-TCCTTAAATAAGGCAAGCATTGATTCTCATAACAATC
634520 TCCACTCTTTTCGAGATTGGGAAC
453 TCCACTCTTTTCGAGATTGGGAAC
* * *
634544 CAAAAACACATTCCTTTCAATAAGATACGTGACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * *
634609 CTTTCAACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGACACAA
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * *
634674 AAATCCTCATTCTTCTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGCATACACGATATT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATT
* * * * *
634739 GATGGTTTGGTTTCGTAAGAAACGCTTTTTTCCCACCAATTTTGGTAAAGTCTATGTACATGCCT
196 GATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCT
* * * *
634804 CAAATGTGACAAACATGGATTGTAGTAATGATCCTCATTCACGTTGTGATTCGGCAGTATAAACT
261 CAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAACT
* * *
634869 TATTCTCCTCCTTAGGATAAATGAGATGGATGATTTTCTTTTGCATGGAAATTTTTTCTTTGCCC
326 TATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
634934 TATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCC
391 TATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCC
*
634999 ACTCTTTTCGAGATCGGGAAC
456 ACTCTTTTCGAGATTGGGAAC
* *
635020 CAAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * * * *
635085 CTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAGCATGAATTGTCATAG
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * * * *
635150 AAATCCTCATTCTTTTTCGGATTAGGCACCATAAACTTAGTATTCTCATCAGCATACACGATATT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATT
* * * * * * *
635215 GATGGTTTGGCTTCGTAAGAAAGGCTTTCTTCCTACCAATTTTGGTAAACTGTATGTTCATGCCT
196 GATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCT
* *
635280 CAAATGT-CACAAATATGGATTGC-AGTAATGATCCTCATTCACGTTGTGATTAGGCAGTATAAA
261 CAAATGTGC-CAAACATGGATT-CTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAA
* *
635343 CTTATTCTCCTCCTTAGGATAAATGATATGGATGATTTTCTTTTACATGGAAA------C--T-C
324 CTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
*
635399 CC-ATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCAAAACAATCT
389 CCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCT
*
635463 CCACTCTTTTCAAGATTGGGAAC
454 CCACTCTTTTCGAGATTGGGAAC
*
635486 CAAAAACACATTCCTTTCAATAGGATACGTGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* *
635551 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGACACAA
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * *
635616 AAATCCTCATTCTTTTTTAGATTAGGCACCATAAACTTAGTCTTCTCATAAGCATACACGATATT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATT
* * * *
635681 GATGGTTTGGTTTCAT-AAGAAAGCTTTCTTCCCACC-ATTTTGGTAGAGTCTATGTTCGAGCCT
196 GATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCT
* *
635744 CAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGGGATTAGGCAGTGTAAACT
261 CAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAACT
* *
635809 TATTCTCCTCCTTAGGATAAATGATATGAATGA-TTTCTTTTGCATGGAAATCTTTTCTTTGCCC
326 TATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
* * * *
635873 TATTTTCCTTAAAATCAAAGTTCA-TCCATTAAATACGGCAAACATTGATTCTCGTAACAGTCTC
391 TATTTTCCTTAAAATCAAAGTTCATTCC-TTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
* *
635937 TACTCTTTTCGGGATTGGGAAC
455 CACTCTTTTCGAGATTGGGAAC
* * * * * * * * *
635959 AAAAAACACATTCTTTTTATTGGGATACG-CA-ATATGATGCTTTGATGCCGCAAGAAAAGCTTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACAT-TGATGCTTTAATGTCGCAAGAAAAGCATT
* *
636022 TCTTCCAACC-TTTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCAC
65 TCTTTCAACCGTTTTT-GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCAC
* * * ** *
636086 ACTAATCCTCATTCTATTTCGGATTAGGCACCATAAAATTAGTCTTC-CATAAGGACGCATGATA
129 ACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATA
* * * * * *
636150 TTAACGGTTTGGTTTAGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGC
194 TTGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
* * * * * *
636215 CTCAATTGTGGCAAACATGGATTGTAGTAATGATCTTTA-TCTACTTTGTGATTAGGCACTATAA
259 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTC-ACGTTGTGATTAGGCAGTATAA
** * * * ** *
636279 ACAAACTT-TCTTTATTAGGATAAGTGATATTCATGATTTTCTTTTGCA-GAGAAAACTTTTCTT
323 ACTTA-TTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATG-GAAATCTTTTCTT
* **
636342 TGCCCTATTTTCCTTAACATCAAA-TTCA-TCCATTAAATAAGGCAAGCATTGATTCTCGCAACA
386 TGCCCTATTTTCCTTAAAATCAAAGTTCATTCC-TTAAATAAGGCAAGCATTGATTCTCATAACA
*
636405 GTCTCCACTCTTTTCGAGATTGGGAAC
450 ATCTCCACTCTTTTCGAGATTGGGAAC
* * * * * *
636432 CAAAAACACATTCCTTTCAATAAGATACGCGACATTGACGCTTTGATGCCGCAAGAAAAGCTTTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * * ** * * *
636497 CTTCCAACCGTTTTTTATAGAATCAAAGTTTGTCTCCTAAATAAGATGAATATGAATAGTCATAA
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * *
636562 AAATCCTTATTCCTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAT-AGGCATACACGATAT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGG-ATACACGATAT
* *
636626 TGATGGTTTGGTTTCGT-AAGAAAGCTTTCTTCCCAGCAATTTTGGTAAAGTCTATGTTCGTGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
*
636690 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTT-TTTCACGTTGTGATTAGGCAGTATAAAC
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
* *
636754 TTATTCTCCTCCA-TAGGATAAATTATATGGATGATATTCTTTTGCATGGAAATCTTTTCTTTGC
325 TTATTCTCCT-CATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * * *
636818 CATGTTTTCCTT-AAATCAAAGTAC-TCTCCTTAAACAAGGCAAGCATTGATTCTCATAACAATC
389 CCTATTTTCCTTAAAATCAAAGTTCAT-TCCTTAAATAAGGCAAGCATTGATTCTCATAACAATC
636881 TCCACTCTTTTCGAGATTGGGAAC
453 TCCACTCTTTTCGAGATTGGGAAC
* * *
636905 CAAAAACACATTCCTTTCAATAAGATACGTGACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * *
636970 CTTTCAACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGACACAA
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * * *
637035 AAATCCTCATTCTTCTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGCATACGCGATATT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATT
* * * * *
637100 GATGGTTTGGTTTCGTAAGAAACGCTTTTTTCCCACCAATTTTGGTAAAGTCTATGTACATGCCT
196 GATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCT
* * * *
637165 CAAATGTGACAAACATGGATTGTAGTAATGATCCTCATTCACGTTGTGATTCGGCAGTATAAACT
261 CAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAACT
* * *
637230 TATTCTCCTCCTTAGGATAAATGAGATGGATGATTTTCTTTTGCATGGAAATTTTTTCTTTGCCC
326 TATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
637295 TATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCC
391 TATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCC
*
637360 ACTCTTTTCGAGATCGGGAAC
456 ACTCTTTTCGAGATTGGGAAC
* *
637381 CAAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * *
637446 CTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGACACAA
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * *
637511 AAATCCTCATTCTTTTTTAGATTAGGCACCATAAACTTAGTCTTCTCATAAGCATACACGATATT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATT
* * * *
637576 GATGGTTTGGTTTCAT-AAGAAAGCTTTCTTCCCACC-ATTTTGGTAGAGTCTATGTTCGAGCCT
196 GATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCT
637639 CAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAACT
261 CAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAACT
* *
637704 TATTCTCCTCCTTAGGATAAATGATATGAATGA-TTTCTTTTGCATGGAAATC--TTC-TT-CCC
326 TATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
637764 TATTTTCCTTAAAATCAAAG-TCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCC
391 TATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCC
*
637828 ACTCTTTTCAAGATTGGGAAC
456 ACTCTTTTCGAGATTGGGAAC
*
637849 CAAAAACACATTCCTTTCAATAGGATACGTGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* *
637914 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGACACAA
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * *
637979 AAATCCTCATTCTTTTTTAGATTAGGCACCATAAACTTAGTCTTCTCATAAGCATACACGATATT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATT
* * * *
638044 GATGGTTTGGTTTCAT-AAGAAAGCTTTCTTCCCACC-ATTTTGGTAGAGTCTATGTTCGAGCCT
196 GATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCT
* * *
638107 CAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGGGATTAGGCCGTGTAAACT
261 CAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAACT
* *
638172 TATTCTCCTCCTTAGGATAAATGATATGAATGA-TTTCTTTTGCATGGAAATCTTTTCTTTGCCC
326 TATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
* * * *
638236 TATTTTCCTTAAAATCAAAGTTCA-TCCATTAAATACGGCAAACATTGATTCTCGTAACAGTCTC
391 TATTTTCCTTAAAATCAAAGTTCATTCC-TTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
*
638300 CACTCTTTTCGGGATTGGGAAC
455 CACTCTTTTCGAGATTGGGAAC
* * * * * * * * *
638322 AAAAAACACATTCTTTTTATTGGGATACGCA-ATATTGATGCTTTGATGCCGCAAGAAAAGCTTT
1 CAAAAACACATTCCTTTCAATAGGATACG-AGACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* *
638386 TCTTCCAACC-TTTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCAC
65 TCTTTCAACCGTTTTT-GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCAC
* * * ** *
638450 ACTAATCCTCATTCTATTTCGGATTAGGCACCATAAAATTAGTCTT-TCCATAAGGACGCATGAT
129 ACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCT-CATAAGGATACACGAT
* * * * * *
638514 ATTAACGGTTTGGTTTAGTAAGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTG
193 ATTGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTG
* * * * * *
638579 CCTCAATTGTGGCAAACATGGATTGTAGTAATGATCTTTA-TCTACTTTGTGATTAGGCACTATA
258 CCTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTC-ACGTTGTGATTAGGCAGTATA
** * * * * *
638643 AACAAACTT-TCTTTATTAGGATAAGTGATATTGATGATTTTCTTTTGCA-GAGAAAACTTTTCT
322 AACTTA-TTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATG-GAAATCTTTTCT
* **
638706 TTGCCCTATTTTCCTTAACATCAAA-TTCA-TCCATTAAATAAGGCAAGCATTGATTCTCGCAAC
385 TTGCCCTATTTTCCTTAAAATCAAAGTTCATTCC-TTAAATAAGGCAAGCATTGATTCTCATAAC
*
638769 AGTCTCCACTCTTTTCGAGATTGGGAAC
449 AATCTCCACTCTTTTCGAGATTGGGAAC
* * * * * *
638797 CAAAAACACATTCCTTTCAATAAGATACGCGACATTGACGCTTTGATGCCGCAAGAAAAGCTTTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * ** * * *
638862 CTTCCAACCGTTTTTTATAGAATCAAAGTTTGTCTC-TAAATAAGATGAATATGAATAGTCATAA
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * * *
638926 AAATCCTTAATCCTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAT-AGGCATACACGATAT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGG-ATACACGATAT
* *
638990 TGATGGTTTGGTTTCGT-AAGAAAGCTTTCTTCCCAGCAATTTTGGTAAAGTCTATGTTCGTGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
*
639054 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTT-TTTCACGTTGTGATTAGGCAGTATAAAC
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
* *
639118 TTATTCTCCTCCA-TAGGATAAATTATATGGATGATATTCTTTTGCATGGAAATCTTTTCTTTG-
325 TTATTCTCCT-CATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* *
639181 CC-ATGTTTCCTT-AAATCAAAGTAC-TCTCCTTAAACAAGGCAAGCATTGATTCTCATAACAAT
389 CCTAT-TTTCCTTAAAATCAAAGTTCAT-TCCTTAAATAAGGCAAGCATTGATTCTCATAACAAT
639243 CTCCACTCTTTTCGAGATTGGGAAC
452 CTCCACTCTTTTCGAGATTGGGAAC
* * *
639268 CAAAAACACATTCCTTTCAATAAGATACGTGACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * *
639333 CTTTCAACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGACACAA
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * * *
639398 AAATCCTCATTCTTCTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGCATACGCGATATT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATT
* * * * *
639463 GATGGTTTGGTTTCGTAAGAAACGCTTTTTTCCCACCAATTTTGGTAAAGTCTATGTACATGCCT
196 GATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCT
* * * *
639528 CAAATGTGACAAACATGGATTGTAGTAATGATCCTCATTCACGTTGTGATTCGGCAGTATAAACT
261 CAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAACT
* * *
639593 TATTCTCCTCCTTAGGATAAATGAGATGGATGATTTTCTTTTGCATGGAAATTTTTTCTTTGCCC
326 TATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
*
639658 TATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCGTCAGAACAATCTC
391 TATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTC-TCATAACAATCTC
*
639723 CACTC-TTTCGAGATCGGGAAC
455 CACTCTTTTCGAGATTGGGAAC
* *
639744 CAAAAACCACATTCCTTTCAATAGGATACGCGACATTGACGCTTTTAATGTCGCAAGAAAAGCAT
1 CAAAAA-CACATTCCTTTCAATAGGATACGAGACATTGATGC-TTTAATGTCGCAAGAAAAGCAT
* *
639809 TTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-TGAATAGACAC
64 TTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCAC
* *
639873 AAC-AATCCTCATTC-TTTTTAGATTAGGCACCATAAACTTAGTCTTCTTATAAGCG-TACACGA
129 -ACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAG-GATACACGA
* * *
639935 TGTTGATGGTTTGGTTTTCAT-AAGAAAGCTTT-TTCCCACCAATTTTGGTAAAGTCTATGTTCG
192 TATTGATGGTTTGG-TTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCG
* * * * * *
639998 TGGCCTCAAATGTGCCAAACAAGGATTGTGGTAATGATCTTTA-TCTACTTTGTGATTAGGCACT
256 T-GCCTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTC-ACGTTGTGATTAGGCAGT
** * * * * *
640062 ATAAACCAAACTT-TCTTTATTAGGATAAGTGATATTGATGATTTTCTTTTGCA-GAGAAAACTT
319 ATAAA-CTTA-TTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATG-GAAATCTT
* *
640125 TTCTTTGCCCTATTTTCCTTAACATCAAA-TTCA-TCCATTAAATAAGGCAAGCATTGATTCTCG
381 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCC-TTAAATAAGGCAAGCATTGATTCTCA
* *
640188 CAACAGTCTCCACTCTTTTCGAGATTGGGAAC
445 TAACAATCTCCACTCTTTTCGAGATTGGGAAC
* *
640220 CAAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* *
640285 CTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGACACAC
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * * * * *
640350 AAATCCTCATACTTTTTTAGATTAGGCACCATAAACTTAGTCTTCTTATGAGCG-TACACGATGT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAG-GATACACGATAT
* * *
640414 TGATGGTTTGGTTTCAT-AAGAAAGCTTTTTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
* * * * *
640478 TCAAATGTGCCAAACATGGATTGTGGTAATGATCTTTA-TCTACTTTGTGATTAGGCACTATAAA
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTC-ACGTTGTGATTAGGCAGTATAAA
** * * * * *
640542 CAAACTT-TCTTTATTAGGATAAGTGATATTGATGATTTTCTTTTGCA-GAGAAAACTTTTCTTT
324 CTTA-TTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATG-GAAATCTTTTCTTT
* ** *
640605 GCCCTATTTTCCTTAACATCAAA-TTCA-TCCATTAAATAAGGCAAGCATTGATTCTCGCAACAG
387 GCCCTATTTTCCTTAAAATCAAAGTTCATTCC-TTAAATAAGGCAAGCATTGATTCTCATAACAA
640668 TCTCCACTCTTTTCGAGATTGGGAAC
451 TCTCCACTCTTTTCGAGATTGGGAAC
* * * *
640694 CAAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCTTTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* *
640759 CTTCCAACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * * *
640824 AAATCCTTATTCCTTTTCGGATTAGGCACCATAAACTTAGTCTTCTCAT-AGGCATACACGATAT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGG-ATACACGATAT
* * *
640888 TGATGGTTTGGTTTCGT-AAGAAAGCTTTCTTCCCAGCAATTTTGGTAAAATCTATGTTCGTGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
*
640952 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTT-TTTCACGTTGTGATTAGGCAGTATAAAC
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAAC
*
641016 TTATTCTCCTCCA-TAGGATAAATGATATGGATGATATTCTTTTGCATGGAAATCTTTTCTTT-C
325 TTATTCTCCT-CATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* *
641079 CTCTATTTTCCTTAAAATCAAAGTAC-TCTCCTTAAACAAGGCAAGCATTGATTCTCATAACAAT
389 C-CTATTTTCCTTAAAATCAAAGTTCAT-TCCTTAAATAAGGCAAGCATTGATTCTCATAACAAT
641143 CTCCACTCTTTTCGAGATTGGGAAC
452 CTCCACTCTTTTCGAGATTGGGAAC
* * *
641168 CAAAAACACATTCCTTTCAATAAGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * * * *
641233 CTTTCAACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAGACATGAATAGACACAA
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * * *
641298 AAATCCTCATTCTTCTTTGGATTAGGCACCATAAACTTAGTCTCCTCATAAGCATACACGATATT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATT
* * * * *
641363 GATGGTTTGGTTTCGTAAGAAACGCTTTTTTCCCACCAATTTTGGTAAAGTCTATGTACATGCCT
196 GATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCT
* * *
641428 CAAATGTGACAAACATGGATTGTAGTAATGATCCTT-ATTCACGTTGTGATTCGGCAGTATAAAC
261 CAAATGTGCCAAACATGGATTCTAGTAATGAT-CTTCATTCACGTTGTGATTAGGCAGTATAAAC
* * * *
641492 TTATTCTCCTCCTTAGGATAAATGAGATGGATGATTTTCTTTTGCATGAAAATTTTTTCTTTGCC
325 TTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
641557 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
390 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
*
641622 CACTCTTTTCGAGATCGGGAAC
455 CACTCTTTTCGAGATTGGGAAC
* *
641644 CAAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * *
641709 CTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGACACAA
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * * * * *
641774 AAATCCTCATACATTTTTAGATTAGGCACCATAAACTTAGTCTTCTTATAAGCG-TACACGATGT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAG-GATACACGATAT
* * *
641838 TGATGGTTTGGTTTCAT-AAGAAAGCTTTTTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
* * * * * *
641902 TCAAATGTGCCAAACAAGGATTGTGGTAATGATCTTTA-TCTACTTTGTGATTAGGCACTATAAA
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTC-ACGTTGTGATTAGGCAGTATAAA
** * * * * *
641966 CAAACTT-TCTTTATTAGGATAAGTGATATTGATGATTTTCTTTTGCA-GAGAAAACTTTTCTTT
324 CTTA-TTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATG-GAAATCTTTTCTTT
* ** *
642029 GCCCTATTTTCCTTAACATCAAA-TTCA-TCCATTAAATAAGGCAAGCATTGATTCTCGCAACAG
387 GCCCTATTTTCCTTAAAATCAAAGTTCATTCC-TTAAATAAGGCAAGCATTGATTCTCATAACAA
642092 TCTCCACTCTTTTCGAGATTGGGAAC
451 TCTCCACTCTTTTCGAGATTGGGAAC
* * * * *
642118 CAAAAACACATTCCTTTCAATAGGATATGCGACATTGACGCTTTGATGTCGCAAGAAAAGCTTTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * *
642183 CTTCCAACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATGGTCACAC
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * * * *
642248 AAATCCTTAATCCTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCAT-AGGCATACACGATGT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGG-ATACACGATAT
* * * *
642312 TGATGGTTTGGTTTCAT-AAGAAAGCTTTTTTCCTACCAATTTTGGTAAAGTCTATGTTCGTGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
* * * * * *
642376 TCAAATGTGCCAATCATGGATTGTGGTAATGATCTTTA-TCTACTTTGTGATTAGGCACTATAAA
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTC-ACGTTGTGATTAGGCAGTATAAA
*
642440 CTTATTCTCCTCCA-TAGGATAAATGATATGGATGATATTCTTTTGCATGGAAATCTTTTCTTT-
324 CTTATTCTCCT-CATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
* * *
642503 CCTCTATTTTCCTTAAAATCAAAGTAC-TCTCCTTAAACAAGGCAAGCATTGATTCTTATAACAA
388 CC-CTATTTTCCTTAAAATCAAAGTTCAT-TCCTTAAATAAGGCAAGCATTGATTCTCATAACAA
642567 TCTCCACTCTTTTCGAGATTGGGAAC
451 TCTCCACTCTTTTCGAGATTGGGAAC
* * *
642593 CAAAAACACATTCCTTTCAATAAGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * * *
642658 CTTTCAACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAGACATGAATAGACACAA
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * *
642723 AAATCCTCATTCTTCTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGCATACACGATATT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATT
* * * * *
642788 GATGGTTTGGTTTCGTAAGAAACGCTTTTTTCCCACCAATTTTGGTAAAGTCTATGTACATGCCT
196 GATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCT
* * * *
642853 CAAATGTGACAAACATGGATTGTAGTAATGATCCTCATTCACGTTGTGATTCGGCAGTATAAACT
261 CAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAACT
* * *
642918 TATTCTCCTCCTTAGGATAAATGAGATGGATGATTTTCTTTTGCATGGAAATTTTTTCTTTGCCC
326 TATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
642983 TATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCC
391 TATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCC
*
643048 ACTCTTTTCGAGATCGGGAAC
456 ACTCTTTTCGAGATTGGGAAC
* *
643069 CAAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* *
643134 CTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGACACAC
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * * * * ** ** * *
643199 AAATCCTCATTAGTCTTCTT--ATAAGCGTA-CACGATGTTGATGGTTTGGTTTCATAA-GA-A-
131 TAATCCTCATT-CT-TTTTTGGATTAG-GCACCATAAACTT-A--GTCT--TCTCATAAGGATAC
** * * **** * * * * * * * * **
643258 AGCTTTTTTCCCA-CCAAT--TTTGGTAAAGTATA--TGTTCGTGCC-TCAAATGTGCCAAA--C
188 A-CGATATT--GATGGTTTGGTTTCGTAAA-AAAAGCT-TTCTTCCCACCAATTTTGGTAAAGTC
* * ** * * * **
643315 -ATGGATT-GTG-GT--AA--TG---ATC-TTTA-TCTACT-TTG-TGATT-AGGCAC----T-A
248 TAT-G-TTCGTGCCTCAAATGTGCCAAACATGGATTCTAGTAATGAT-CTTCATTCACGTTGTGA
* * * * *
643360 -TA--AACT-T--A-TTCTCCT-C-CA-TAGGATAAATGATATGGATGATATTCTTTTGCATGGA
310 TTAGGCAGTATAAACTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGA
* *
643415 AATCTTTTCTTT-CCTCTATTTTCCTTAAAATCAAAGTAC-TCTCCTTAAACAAGGCAAGCATTG
375 AATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGTTCAT-TCCTTAAATAAGGCAAGCATTG
643478 ATTCTCATAACAATCTCCACTCTTTTCGAGATTGGGAAC
438 ATTCTCATAACAATCTCCACTCTTTTCGAGATTGGGAAC
* *
643517 CAAAAACACATTCCTTTCAATAAGATAC-ACGACATTGACGCTTTAATGTCGCAAGAAAAGCATT
1 CAAAAACACATTCCTTTCAATAGGATACGA-GACATTGATGCTTTAATGTCGCAAGAAAAGCATT
* * * *
643581 TCTTTCAACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAGACATGTATAGACACA
65 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACA
** * *
643646 AAAATCCTCATTCTTCTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGCATACACGATAT
130 CTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATAT
* * * * *
643711 TGATGGTTTGGTTTCGTAAGAAACGCTTTTTTCCCACCAATTTTGGTAAAGTCTATGTACATGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
* * *
643776 TCAAATGTGACAAACATGGATTGTAGTAATGATCCTCATTCACGTTGTGATTCA-GCAGTATAAA
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATT-AGGCAGTATAAA
* * * *
643840 CTTATTCTCCTCCTTAGCATAAATGAGATGGATGATTTTCTTTTGCATGGAAATTTTTTCTTTGC
324 CTTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
643905 CCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCT
389 CCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCT
*
643970 CCACTCTTTTCGAGATCGGGAAC
454 CCACTCTTTTCGAGATTGGGAAC
* *
643993 CAAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* *
644058 CTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGACACAC
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * * * **
644123 AAATCCTCATACTTTTTTAGATTAGGCACCATAAACTTAGTCTTCTTATAAGCG-TACACGACGT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAG-GATACACGATAT
* * *
644187 TGATGGTTTGGTTTCAT-AAGAAAGCTTTTTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
* * * * * *
644251 TCAAATGTGCCAAACAAGGATTGTGGTAATGATCTTTA-TCTACTTTGTGATTAGGCACTATAAA
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTC-ACGTTGTGATTAGGCAGTATAAA
** * * * * *
644315 CAAACTT-TCTTTATTAGGATAAGTGATATTGATGATTTTCTTTTGCA-GAGAAAACTTTTCTTT
324 CTTA-TTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATG-GAAATCTTTTCTTT
* ** *
644378 GCCCTATTTTCCTTAACATCAAA-TTCA-TCCATTAAATAAGGCAAGCATTGATTCTCGCAACAG
387 GCCCTATTTTCCTTAAAATCAAAGTTCATTCC-TTAAATAAGGCAAGCATTGATTCTCATAACAA
644441 TCTCCACTCTTTTCGAGATTGGGAAC
451 TCTCCACTCTTTTCGAGATTGGGAAC
* * * * *
644467 CAAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTGATGTCACAAG-AAAGCTTTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* *
644531 CTTCCAACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * * * *
644596 AAATCCTTATTCCTTTTCGGATTAGGCACCATAAACTTAGTCTTCTCAT-AGGCATACACGATGT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGG-ATACACGATAT
* * *
644660 TGATGGTTTGGTTTCAT-AAGAAAGCTTTTTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
* * * * *
644724 TCAAATGTGCCAAACATGGATTGTGGTAATGATCTTTA-TCTACTTTGTGATTAGGCACTATAAA
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTC-ACGTTGTGATTAGGCAGTATAAA
*
644788 CTTATTCTCCTCCA-TAGGATAAATGATATGGATGATATTCTTTTGCATGGAAATCTTTTCTTT-
324 CTTATTCTCCT-CATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
* * *
644851 CCTCTATTTTCCTTAAAATAAAAGTAC-TCTCCTTAAACAAGGCAAGCATTGATTCTCATAACAA
388 CC-CTATTTTCCTTAAAATCAAAGTTCAT-TCCTTAAATAAGGCAAGCATTGATTCTCATAACAA
644915 TCTCCACTCTTTTCGAGATTGGGAAC
451 TCTCCACTCTTTTCGAGATTGGGAAC
* * *
644941 CAAAAACACATTCCTTTCAATAAGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* * * *
645006 CTTTCAACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAGACATGAATAGACACAA
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * *
645071 AAATCCTCATTCTTCTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGCATACACGATATT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATT
* * * * *
645136 GATGGTTTGGTTTCGTAAGAAACGCTTTTTTCCCACCAATTTTGGTAAAGTCTATGTACATGCCT
196 GATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCT
* * * *
645201 CAAATGTGACAAACATGGATTGTAGTAATGATCCTCATTCACGTTGTGTTTCA-GCAGTATAAAC
261 CAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATT-AGGCAGTATAAAC
* * *
645265 TTATTCTCCTCCTTAGGATAAATGAGATGGATGATTTTCTTTTGCATGGAAATTTTTTCTTTGCC
325 TTATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
645330 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
390 CTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTC
*
645395 CACTCTTTTCGAGATCGGGAAC
455 CACTCTTTTCGAGATTGGGAAC
* *
645417 CAAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* *
645482 CTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC-AACATGAATAGACACAC
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * * * **
645546 AAATCCTCATACTTTTTTAGATTAGGCACCATAAACTTAGTCTTCTTATAAGCG-TACACGACGT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAG-GATACACGATAT
* * *
645610 TGATGGTTTGGTTTCAT-AAGAAAGCTTTTTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
195 TGATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCC
* * * * * *
645674 TCAAATGTGCCAAACAAGGATTGTGGTAATGATCTTTA-TCTACTTTGTGATTAGGCACTATAAA
260 TCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTC-ACGTTGTGATTAGGCAGTATAAA
** * * * * *
645738 CAAACTT-TCTTTATTAGGATAAGTGATATTGATGATTTTCTTTTGCA-GAGAAAACTTTTCTTT
324 CTTA-TTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATG-GAAATCTTTTCTTT
* ** *
645801 GCCCTATTTTCCTTAACATCAAA-TTCA-TCCATTAAATAAGGCAAGCATTGATTCTCGCAACAG
387 GCCCTATTTTCCTTAAAATCAAAGTTCATTCC-TTAAATAAGGCAAGCATTGATTCTCATAACAA
645864 TCTCCACTCTTTTCGAGATTGGGAAC
451 TCTCCACTCTTTTCGAGATTGGGAAC
* * * *
645890 CAAAAACACATTCCTTTCAATAGGATACGCGACATTGACGCTTTGATGTCGCAAGAAAAGCTTTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
* *
645955 CTTCCAACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
66 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
* * * * *
646020 AAATCCTTATTCCTTTTCGGATTAGGCACCATAAACTTAGTCTTCTCAT-AGGCATACACGATGT
131 TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGG-ATACACGATAT
* * *
646084 TGATGGTTTGGTTTCAT-AAGAAAGCTTTTTTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
195 TGATGGTTTGGTTTCGTAAAAAAAGC-TTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGC
* * * * *
646148 CTCAAATGTGCCAAACATGGATTGTGGTAATGATCTTTA-TCTACTTTGTGA-TAGGCACTATAA
259 CTCAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTC-ACGTTGTGATTAGGCAGTATAA
*
646211 ACTTATTCCTCCTCCA-TAGGATAAATGATATGGATGATATTCTTTTGCATGGAAATCTTTTC-T
323 ACTTATT-CTCCT-CATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* *
646274 T-CCTCTA-TTTCCTTAAAATCAAAGTAC-TCTCCTTAAACAAGGCAAGCATTGATTCTCATAAC
386 TGCC-CTATTTTCCTTAAAATCAAAGTTCAT-TCCTTAAATAAGGCAAGCATTGATTCTCATAAC
646336 AATCTCCACTCTTTTCGAGATTGGGAAC
449 AATCTCCACTCTTTTCGAGATTGGGAAC
* * *
646364 CAAAAACACATTCCTTTCAATAAGATACGCGACATTGACGCTTTAATGTCGCAAGAAAAGCATTT
1 CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
646429 CTTTCA
66 CTTTCA
646435 TCCATCTCAT
Statistics
Matches: 54702, Mismatches: 7198, Indels: 4461
0.82 0.11 0.07
Matches are distributed among these distances:
443 8 0.00
444 2 0.00
445 9 0.00
446 16 0.00
447 17 0.00
448 271 0.00
449 15 0.00
450 42 0.00
451 35 0.00
452 91 0.00
453 638 0.01
454 133 0.00
455 192 0.00
456 147 0.00
457 499 0.01
458 298 0.01
459 140 0.00
460 243 0.00
461 358 0.01
462 214 0.00
463 207 0.00
464 661 0.01
465 334 0.01
466 359 0.01
467 98 0.00
468 524 0.01
469 527 0.01
470 1571 0.03
471 1515 0.03
472 1432 0.03
473 6414 0.12
474 9506 0.17
475 11310 0.21
476 11914 0.22
477 1742 0.03
478 689 0.01
479 308 0.01
480 177 0.00
481 69 0.00
482 33 0.00
483 35 0.00
484 158 0.00
485 84 0.00
486 114 0.00
487 106 0.00
488 30 0.00
489 8 0.00
490 38 0.00
491 47 0.00
492 30 0.00
493 29 0.00
494 23 0.00
495 18 0.00
496 24 0.00
497 29 0.00
498 27 0.00
499 39 0.00
500 32 0.00
501 50 0.00
502 38 0.00
503 48 0.00
504 42 0.00
505 39 0.00
506 69 0.00
507 45 0.00
508 39 0.00
509 67 0.00
510 33 0.00
511 41 0.00
512 34 0.00
513 20 0.00
514 30 0.00
515 39 0.00
516 20 0.00
517 4 0.00
519 2 0.00
524 1 0.00
525 6 0.00
526 58 0.00
527 111 0.00
528 113 0.00
529 107 0.00
530 17 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (476 bp):
CAAAAACACATTCCTTTCAATAGGATACGAGACATTGATGCTTTAATGTCGCAAGAAAAGCATTT
CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAC
TAATCCTCATTCTTTTTTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATT
GATGGTTTGGTTTCGTAAAAAAAGCTTTCTTCCCACCAATTTTGGTAAAGTCTATGTTCGTGCCT
CAAATGTGCCAAACATGGATTCTAGTAATGATCTTCATTCACGTTGTGATTAGGCAGTATAAACT
TATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
TATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCC
ACTCTTTTCGAGATTGGGAAC
Found at i:600901 original size:211 final size:211
Alignment explanation
Indices: 600537--600946 Score: 623
Period size: 211 Copynumber: 1.9 Consensus size: 211
600527 CTTTCTTTAT
* * *
600537 TAGGATAAGTGATATTGATGATTTTCTTTTGCAGAGAAAACTTTTCTTTGCCCTATTTTCCTTAA
1 TAGGATAAATGATATGGATGATATTCTTTTGCAGAGAAAACTTTTCTTTGCCCTATTTTCCTTAA
* * * * *
600602 CATCAAATTCATCCATTAAATAAGGCAAGCATTGATTCTCGCAACAGTCTCCACTCTTTTCGAGA
66 AATCAAATTCATCCATTAAACAAGGCAAGCATTGATTCTCACAACAATCTCCACTCTTTTCAAGA
*
600667 TTGGGAACCAAAAACACATTCCTTTCAATAAGATACGCGACATTGACGCTTTGATG-CTGCAAGA
131 TTGGGAACCAAAAACACATTCCTTTCAATAAGATACGCGACATTGACGCTTTAATGTC-GCAAGA
600731 AAAGCTATTCTCCTCCA
195 AAAGCTATTCTCCTCCA
* *
600748 TAGGATAAATGATATGGATGATATTCTTTTGCATG-GAAATCTTTTCTTTGCCCTGTTTTCCTTA
1 TAGGATAAATGATATGGATGATATTCTTTTGCA-GAGAAAACTTTTCTTTGCCCTATTTTCCTTA
*
600812 AAATCAAAGTACTC-TCC-TTAAACAAGGCAAGCATTGATTCTCATAACAATCTCCACTC-TTTC
65 AAATCAAA-T--TCATCCATTAAACAAGGCAAGCATTGATTCTCACAACAATCTCCACTCTTTTC
*
600874 AAGATTGGGAACCAAAAACACATTCCTTTCAATAAGATACGTGACATTGACGCTTTAATGTCGCA
127 AAGATTGGGAACCAAAAACACATTCCTTTCAATAAGATACGCGACATTGACGCTTTAATGTCGCA
600939 AGAAAAGC
192 AGAAAAGC
600947 ATTTCTTTCA
Statistics
Matches: 181, Mismatches: 13, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
211 136 0.75
212 40 0.22
213 3 0.02
214 2 0.01
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (211 bp):
TAGGATAAATGATATGGATGATATTCTTTTGCAGAGAAAACTTTTCTTTGCCCTATTTTCCTTAA
AATCAAATTCATCCATTAAACAAGGCAAGCATTGATTCTCACAACAATCTCCACTCTTTTCAAGA
TTGGGAACCAAAAACACATTCCTTTCAATAAGATACGCGACATTGACGCTTTAATGTCGCAAGAA
AAGCTATTCTCCTCCA
Found at i:619923 original size:212 final size:211
Alignment explanation
Indices: 619557--619967 Score: 632
Period size: 212 Copynumber: 1.9 Consensus size: 211
619547 CTTTCTTTAT
* * *
619557 TAGGATAAGTGATATTGATGATTTTCTTTTGCAGAGAAAACTTTTCTTTGCCCTATTTTCCTTAA
1 TAGGATAAATGATATGGATGATATTCTTTTGCAGAGAAAACTTTTCTTTGCCCTATTTTCCTTAA
* * * * *
619622 CATCAAATTCATCCATTAAATAAGGCAAGCATTGATTCTCGCAACAGTCTCCACTCTTTTCGAGA
66 AATCAAATTCATCCATTAAACAAGGCAAGCATTGATTCTCACAACAATCTCCACTCTTTTCAAGA
*
619687 TTGGGAACCAAAAACACATTCCTTTCAATAAGATACGCGACATTGACGCTTTGATG-CTGCAAGA
131 TTGGGAACCAAAAACACATTCCTTTCAATAAGATACGCGACATTGACGCTTTAATGTC-GCAAGA
619751 AAAGCTATTCTCCTCCA
195 AAAGCTATTCTCCTCCA
* *
619768 TAGGATAAATGATATGGATGATATTCTTTTGCATG-GAAATCTTTTCTTTGCCCTGTTTTCCTTA
1 TAGGATAAATGATATGGATGATATTCTTTTGCA-GAGAAAACTTTTCTTTGCCCTATTTTCCTTA
*
619832 AAATCAAAGTACTC-TCC-TTAAACAAGGCAAGCATTGATTCTCATAACAATCTCCACTCTTTTC
65 AAATCAAA-T--TCATCCATTAAACAAGGCAAGCATTGATTCTCACAACAATCTCCACTCTTTTC
*
619895 AAGATTGGGAACCAAAAACACATTCCTTTCAATAAGATACGTGACATTGACGCTTTAATGTCGCA
127 AAGATTGGGAACCAAAAACACATTCCTTTCAATAAGATACGCGACATTGACGCTTTAATGTCGCA
619960 AGAAAAGC
192 AGAAAAGC
619968 ATTTCTTTCA
Statistics
Matches: 182, Mismatches: 13, Indels: 9
0.89 0.06 0.04
Matches are distributed among these distances:
211 64 0.35
212 112 0.62
213 4 0.02
214 2 0.01
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.33
Consensus pattern (211 bp):
TAGGATAAATGATATGGATGATATTCTTTTGCAGAGAAAACTTTTCTTTGCCCTATTTTCCTTAA
AATCAAATTCATCCATTAAACAAGGCAAGCATTGATTCTCACAACAATCTCCACTCTTTTCAAGA
TTGGGAACCAAAAACACATTCCTTTCAATAAGATACGCGACATTGACGCTTTAATGTCGCAAGAA
AAGCTATTCTCCTCCA
Found at i:648787 original size:965 final size:952
Alignment explanation
Indices: 646432--651528 Score: 4169
Period size: 970 Copynumber: 5.3 Consensus size: 952
646422 AGCATTTCTT
* * *
646432 TCATCCATCTCATTTATCCTAAGGAGGAGAATAAGTTTATAC-TGCTGAATCACAAC-GT-GACT
1 TCATCCATATCATTTATCCTATGGAGGAGAATAAGTTTATTCGTGCT-AATCACAACAGTAGA-T
* * * * *
646494 GAGGAATCATTACTAC-ATCCATGTTT-GTACATTTGAGGGCACTCTTCCCCGGTACATAGACTT
64 AAAG-ATCATTACCACAATCCATGTTTGGCACATTTGA-GGCA--------C-GAACATAGACTT
* * *
646557 TACC-AAATTGGTGGGGAAAAAAAAGCAGTTTC-TACCGAAACCAAACCCT-CAATATCGTGTAT
118 TACCAAAATTGGT-GGG--AAAAAAGC--TTTCTTA-TGAAACCAAACCATCCAACATCGTGTAT
* * * * *
646619 GCTTATGAGAAG-CTAAGTTTTTATGGTGCCTCATCCCAAGAAG-AATGAGGATTT-TGTGTCTA
177 GCCTATGAGAAGACTAAG--TTTATGGTGCCTAAT-CCAAAAAGTTATAAGGATTTGTGTGTCTA
* *
646681 TTCATG-TCGTCTT-TTTTAGAGACAAACTTTGA-TCTTATAAAAAACGGTTGAAAGAAATGCTT
239 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC-TATAAAAAACGGTTGAAAGAAA-GCTT
* * * *
646743 TTCTTGCGACTTTTAAAGCGTCAATGTCGCGTATCTTATTGAAAGGCATTGTTGTTTTTGTTCCC
302 TTCTTGCGAC-ATCAAAGCG-CAATGTCGCGTATCCTATTGAAAGG-AATGTT-TTTTTGTTCCC
* * * *
646808 AATCTCGAAAAAGAGTGGAGATTGTTATGAGAATCAATGC-TGCC-T-GTTAAGGAGCGTTACTT
363 AATCTCG-AAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGA---TGAATT
* * * * *
646870 TGATTTTAAGG-AAATAGAGGAAAAGACAAGATTTCCATGCAAAA-AGCATTCATCCATATCATT
424 TGATTTTAAGGAAAATAG-GGCAAAGAAAAAATTTCCATGCAAAAGAACAATCATCCATATCATT
* *
646933 TATCCTATGGAGGAGAATAAAG-TTATAGTGCCTAATCCCAAGTAGATAAAGATTCATTA-CACA
488 TATCCTATAGAGGAGAAT-AAGTTTATAGTGCCTAATCACAAGTAGATAAAGA-TCATTACCACA
* *
646996 A-CCATGTTTGGC-CACTGAGGCCCGAA-ATAGACTTTACCAAAATTGGTGGGAAAAAAGCTTTC
551 ATCCATGTTTGGCACATTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAAAAAGCTTTC
*
647058 TTATGAAACCAAAACCATCAACATCGTGTATGCCTATG-G-AGACTACGTTTATGGTG-CTAATC
616 TTATGAAACC-AAA-CATCAACATCGTGTATGCCTATGAGAAGACTAAG-TTATGGTGCCTAATC
* * * * * *
647120 CGAAAAGGA-ATA-AAGGA-TTGTGTGACTATTCAT-TTTGTCTTATTTAATGAGACAAACTTTT
678 C-AAAAGAAGATATGAGGATTTGTGTGTCTATTCATGTCTGTCTTATTT-ACGAGACAAACTTTG
* * * *
647181 ATTCTATAAAAAACGGTTGGAAGAAA-GCTTTGCTTGCGACATCAAAGCGTCAATGTCACGTTAT
741 ATTCTATAAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCGTCAATGTCGCG-TAT
* **
647245 CCTATTGAAAGGAATG-GTTTTTGGTT-CCAATCTCG-AAAGAGTGGAGACTGTTGCGAGAATCA
805 CCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGATTGTTATGAGAATCA
* * * * * *
647307 ATGCTTGCC-TA-TTAA--TGATGCA-TTTGCTGTTTTAGGGAAAAT--AGG---GCG-AGAAAA
870 ATGCTTGCCTTATTTAAGGAGATGTACTTTG--ATTTTAAGGAAAATAGAGGAAAGGGAAAAAAA
* * *
647361 GTTTTTCTC-TGCACAAGAAAT
933 G-ATTTC-CATGCAAAAGAAAA
* * * ** *
647382 TCATCAATATCACTTAT-CTAAT--A-AAGAACGTTTGTTTA-TAGTGCTAATCACAA-AGTTAG
1 TCATCCATATCATTTATCCT-ATGGAGGAGAA--TAAGTTTATTCGTGCTAATCACAACAG-TAG
* *
647441 ATAAAGCATCATTACCCCAATCCTTGTTTGGGCACATTTGATGGCACGAACACATTAGACTTTAC
62 ATAAAG-ATCATTACCACAATCCATGTTT-GGCACATTTGA-GGCACG-A-ACA-TAGACTTTA-
* * *
647506 CCAAAAAATTGGTGGGAAAAAAAGCTTTCTTATGAAAACCAAACCAT-CAACGTCGTGTACGCTT
120 CC--AAAATTGGTGGG-AAAAAAGCTTTCTTATG-AAACCAAACCATCCAACATCGTGTATGCCT
* * * *
647570 ATAACAAGACTAAGTTTATGGTG-CTAATCCTACAAAG-TATGAGGATTTG-GTGTCTATTCATG
181 ATGAGAAGACTAAGTTTATGGTGCCTAATCC-AAAAAGTTATAAGGATTTGTGTGTCTATTCATG
* *
647632 TTTGTCTTATTTAAGAGACAAACTTTGATTCTAT-CAAAATGGTTTGAAAGAAAATGCTTTTCTT
245 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGG-TTGAAAG-AAA-GCTTTTCTT
* *
647696 GCGACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTTGTTTTTGGTTCCCGATCTC
307 GCGACATCAAAGCG-CAATGTCGCGTATCCTATTGAAAGGAATGTT-TTTTT-GTTCCCAATCTC
* *
647761 GAAAAGAGTGGAGATTGTTATGAGAATCCAATGCTTGCC-TATTTAAGAATGGAACTTTGATTTT
369 GAAAAGAGTGGAGACTGTTATGAGAAT-CAATGCTTGCCTTATTTAAGGAT-GAA-TTTGATTTT
*
647825 AAGGAAAATAGGGCAAAGAAAAAATTTCCATGC-AAAGAACAATCATTCCATCT-ATTTATCCTA
431 AAGGAAAATAGGGCAAAGAAAAAATTTCCATGCAAAAGAACAATCA-TCCATATCATTTATCCTA
* * * * *
647888 -AGAGGAGAATAAGTTTATACTTGCCGAATCACAACGT-GAATGAGGATCATTACTACAATCCAT
495 TAGAGGAGAATAAGTTTATA-GTGCCTAATCACAA-GTAG-ATAAAGATCATTACCACAATCCAT
* * * * * *
647951 GTTTGTCACATTGAGGCATGTACATAGACTTTACCAAACATTGGTGGGAAAAAAAGGTTT-ATAC
557 GTTTGGCACATTGAGGCACGAACATAGACTTTACCAAA-ATTGGTGGG-AAAAAAGCTTTCTTAT
* * *
648015 GAAACCAAACATCAATATCGTGTTTGCTTAT-AGAAGACTAAGTTATGGTTG-CTAATCCAAAGA
620 GAAACCAAACATCAACATCGTGTATGCCTATGAGAAGACTAAGTTATGG-TGCCTAATCCAAA-A
*
648078 GAAGATATGAGGATTTTTGTGTCTATTCAATGTCTG-C-TA-TTA-GAGACAAACTTTGATTCTA
683 GAAGATATGAGGATTTGTGTGTCTATTC-ATGTCTGTCTTATTTACGAGACAAACTTTGATTCTA
*
648139 TAAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCGTCAATGTCGCGTATTTCTTAT
747 TAAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCGTCAATGTCGCGTA--TCCTAT
* * *
648204 GGAAAGGAATGTGTTTTTGGTT-CCAATCTCGAAAAGAGTGGAGATTGTTATAAGAATCACTGC-
810 TGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGATTGTTATGAGAATCAATGCT
* *
648267 TGCCTTGTTTACAGGAGATGTACTTTGATTTTAAGGAAAATAGAGGAAAGGGAAAGGAAAGATTT
875 TGCCTTATTTA-AGGAGATGTACTTTGATTTTAAGGAAAATAGAGGAAAGGGAAA-AAAAGATTT
*
648332 CCATGCAAAAGAATA
938 CCATGCAAAAGAAAA
* *
648347 TCATCCCTATCATTTCTCCTTATGGAGGAGAATAAGTTTATTCGTGCCTAATCACAACAGTAGAT
1 TCATCCATATCATTTATCC-TATGGAGGAGAATAAGTTTATTCGTG-CTAATCACAACAGTAGAT
*
648412 AAAGATCATTACCACCAATCAATGTTTGGCACATTTGAGGCACGAACCATAGACTACTTTACCAA
64 AAAGATCATTACCA-CAATCCATGTTTGGCACATTTGAGGCACGAA-CATAG---ACTTTACCAA
* *
648477 AATTGGTGGGAAAAAAAGCTTTCTTATGAACCCAAACCCT-CAACATCGTTGTATTATGCCTAT-
124 AATTGGTGGG-AAAAAAGCTTTCTTATGAAACCAAACCATCCAACATCG-TG---TATGCCTATG
* *
648540 AGAAGACT-AG-TTAT-GTGCCTAATCCAAAAAGAAATTATATTAATGATTTGTGTGACTATTCA
184 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAG----T-TA-TAAGGATTTGTGTGTCTATTCA
* *
648602 TTGTTTGTC-TATTTAAGAGGACAAACTTTGATTCTCTAAAAAACGGTTGGAAGAACAGCTTTTC
243 -TGTTTGTCTTATTTAAGA-GACAAACTTTGATTCTATAAAAAACGGTTGAAAGAA-AGCTTTTC
* *
648666 TTGCGACATCAAAGAC-C-ATGTCGCATATCCTATTGAAAGGAATGTTTTTTTGTTTCC-ATCTC
305 TTGCGACATCAAAG-CGCAATGTCGCGTATCCTATTGAAAGGAATGTTTTTTTGTTCCCAATCTC
** *
648728 G-AAAGAGTGGAGACTGTTGCGAGAATCAATGCTTGCCCTTATTTACGGATGAATTTGATTTGAT
369 GAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTG-CCTTATTTAAGGATGAATTTGA--T--T
* * * * * *
648792 GTTAAGGAAAATAGGGCAAAG-AAAAGTTTTCTTGCAAAAGAA-ACTCA-CAATATCACTTATCC
429 -TTAAGGAAAATAGGGCAAAGAAAAAATTTCCATGCAAAAGAACAATCATCCATATCATTTATCC
* *** *
648854 TACTA-AAGA-AAGTTTTTTCTATAGTGCCTAATCCCCCAAAGTAGATAAAGAGTCATTACCACA
493 TA-TAGAGGAGAA-TAAGTT-TATAGTGCCTAAT--CAC-AAGTAGATAAAGA-TCATTACCACA
*
648917 ATCCTTGTTT-GCA-ATTTGAGGGCACGAACATAGACTTTACCAAAATTGGTGGGAAAAAAG-TT
551 ATCCATGTTTGGCACA-TTGA-GGCACGAACATAGACTTTACCAAAATTGGTGGGAAAAAAGCTT
*
648979 TCCTTATGAAACCAAAACATCAA-ATCGTGTATGCC-ATGAGAACACTAAGTTATGGTGCCT-AT
614 T-CTTATGAAACC-AAACATCAACATCGTGTATGCCTATGAGAAGACTAAGTTATGGTGCCTAAT
* * * *
649041 CCGAAAAG--GA-CTGAGGATTTTTGTTGTCTATACATGT-TGTCTTATTTAAGAGACAAACCTT
677 CC-AAAAGAAGATATGAGGATTTGTG-TGTCTATTCATGTCTGTCTTATTTACGAGACAAA-CTT
649102 TGATTTCTAT-AAAAACGGTTGAAAAGAAACTGCTTTTCTTGCGACATT-AA-CGTCAATTGTCG
739 TGA-TTCTATAAAAAACGGTTG-AAAGAAA-TGCTTTTCTTGCGACATTAAAGCGTCAA-TGTCG
* * * * * *
649164 CGTATCTTATTGAACGGACTGTGTTTTTGTTTCCCAATCTCGGAAAGAGTGGCGA-TGTTATGAG
800 CGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGATTGTTATGAG
* *
649228 AAATCAATGCTTGCCTTGTTTAAGGAGA-GTAC-TTGATTTTAAGGAAAATAGAGGAAGGAGGAA
865 -AATCAATGCTTGCCTTATTTAAGGAGATGTACTTTGATTTTAAGGAAAATAGAGGAAAG-GGAA
* *
649291 AGACAAGATTTTCCA-GCCAAAGATAAA
928 A-AAAAGA-TTTCCATGCAAAAGA-AAA
* ** *
649318 TCATCCATCTCATTTATCCTATGGAGGA-AATAAGTTT-TTATATGCTAATCCACAACGGTA-A-
1 TCATCCATATCATTTATCCTATGGAGGAGAATAAGTTTATT-CGTGCTAAT-CACAACAGTAGAT
* * * *
649379 AAAGATCAAT-CTAGAATCCAT-TGTTGGCACATTTGAGGCACGGAACATAGATTTTACCAAAAT
64 AAAGATCATTACCACAATCCATGT-TTGGCACATTTGAGGCAC-GAACATAGACTTTACCAAAAT
* * ** * * * * *
649442 TGCTGTGAAGCAAGCTTTCTTACTTAAACCCCAACCCTCCAATATCGTGTATGCCTATGAGCAGG
127 TGGTGGGAAAAAAGCTTTCTTA-TGAAA-CCAAACCATCCAACATCGTGTATGCCTATGAG-AAG
* * * * **
649507 ACTAAGTTTCTGGTGCCTAATCCAAAAAGTCATAAGGATTTGTGTGACTATTCATATTCATCTTA
189 ACTAAGTTTATGGTGCCTAATCCAAAAAGTTATAAGGATTTGTGTGTCTATTCATGTTTGTCTTA
* *
649572 CTTT-AGAGACAAACCTTTGATTCTAT-AAAAACGGTTGGAAGAAAGCTTTTCTTGCGGCAATCA
254 -TTTAAGAGACAAA-CTTTGATTCTATAAAAAACGGTTGAAAGAAAGCTTTTCTTGCGAC-ATCA
* *
649635 AAGCGTCAATGTCGCGTTATTCTTATTGAAAGGAATG-GTTTTTGTCTCCCAATCTCGAAAAGAC
316 AAGCG-CAATGTCGCG-TA-TCCTATTGAAAGGAATGTTTTTTTGT-TCCCAATCTCG--AA-A-
** *
649699 AGAGTGG-GA-TGTTGCGAGAATCAATGCTTGCCTTATTTAATGGA-GAATTTGATGTTATAGGA
373 AGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAA-GGATGAATTTGATTTTA-AGG-
* * *
649761 AAAAATAGGGC-AAG-AAAAGTTTCTC-TGCAAAAGGAA-AATCAATCAATATCACTTTCTCCTA
435 -AAAATAGGGCAAAGAAAAAATTTC-CATGCAAAA-GAACAATC-ATCCATATCA-TTTATCCTA
* ** *
649822 TA-AGAAAGAAAGTTTGTTTATAG-GCCTAATCACAAGTAGATAAAGAATCATTACCACACTCCA
495 TAGAG-GAG-AA-TAAGTTTATAGTGCCTAATCACAAGTAGATAAAG-ATCATTACCACAATCCA
* *
649885 CTGTTTGGCCACACATTTGAGGCCCACGAACA-ATACTTTACCAAAATTGGTCGGAAAAAAGCTT
556 -TGTTTGG---CACA-TTGAGG--CACGAACATAGACTTTACCAAAATTGGTGGGAAAAAAGCTT
* * * * *
649949 TC-TATGAAACCAACCATCAACATCGTGTACGCTTATAAGAAGGACTAAGTTTTGGTGCCTAAT-
614 TCTTATGAAACCAAACATCAACATCGTGTATGCCTATGAGAA-GACTAAGTTATGGTGCCTAATC
* * *
650012 CTAAA-AAG-TATGAGGAATTTGTGTGTCTATTCATGTTTGTCTTATTTACG-GACCAACTTTGA
678 CAAAAGAAGATATGAGG-ATTTGTGTGTCTATTCATGTCTGTCTTATTTACGAGACAAACTTTGA
* * *
650074 TTCTATCCAAAAATGGTTGAAAGAAATGCTTTTCTTGCGACATT-AAGCGTCCAT-TCGCGTATC
742 TTCTAT-AAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCGTCAATGTCGCGTATC
* * * *
650137 CTATTGAAAGGAATGTGTTTTTTGTTCCCGATC-CGAAAAAAGAGTGGAGCTCGTTATGAGAATT
806 CTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCG--AAAAGAGTGGAGATTGTTATGAGAA-T
* *
650201 CAATGCTTGCCGTATTTAAGGA-ATGAACTTTGAATTTTAA-GAAAATAG-GGCAAA--GAAAAA
868 CAATGCTTGCCTTATTTAAGGAGATGTACTTTG-ATTTTAAGGAAAATAGAGG-AAAGGGAAAAA
* *
650261 AAAATTTCCATGCAAAAAAAAA
931 AAGATTTCCATGCAAAAGAAAA
* * * * * *
650283 TCATCCATCTTCATTTATCCTAAGGAGGAGAATACGTTTATAC-TGCGAATCAC-ACCGT-GAAT
1 TCATCCAT-ATCATTTATCCTATGGAGGAGAATAAGTTTATTCGTGCTAATCACAACAGTAG-AT
* * * * *
650345 GAGGATCATTACTACAATCCATGTTTGTCACA-TTGAGGCATGTAACATAGACCTTTACCAAAAT
64 AAAGATCATTACCACAATCCATGTTTGGCACATTTGAGGCACG-AACATAGA-CTTTACCAAAAT
* * *
650409 T-GT-GGAAAAAAGCGTTTCTTACGAAACCAAACCATCCCATATCGTGTATG-CTATGAGAAGAC
127 TGGTGGGAAAAAAGC-TTTCTTATGAAACCAAACCATCCAACATCGTGTATGCCTATGAGAAGAC
* ** * * * * *
650471 TAAGTTTAGGGTGCCTAATCCAAAGAAGGAATGAGGATTTTTGTGGTCGATACATGTCT-TCTTA
191 TAAGTTTATGGTGCCTAATCCAAA-AAGTTATAAGGATTTGTGT-GTCTATTCATGTTTGTCTTA
* * * *
650535 TTTAAGAGACAAACTTTTGATT-TATACAAAACTGTTGAAAGAATGCTTTTCTTTGCCGACAT-T
254 TTTAAGAGACAAAC-TTTGATTCTATAAAAAACGGTTGAAAGAAAGCTTTTC-TTG-CGACATCA
* *
650598 AAGCGTC-ATGTCG-GTAT-CTATTGAAAGGAAT-TGTTTTTGGTTCCCAATTCTCGAAAAGACT
316 AAGCG-CAATGTCGCGTATCCTATTGAAAGGAATGT-TTTTTTGTTCCCAA-TCTCGAAAAGAGT
* * *
650659 GGAG-CTTGTTATGAGAATCCATG-TTGCCTTGTTTAAGGAAGCGAAGTACTTTGATTTTAAGGA
378 GGAGAC-TGTTATGAGAATCAATGCTTGCCTTATTTAAGG-A-TG-A--A-TTTGATTTTAAGGA
* * *
650722 AAATAGAGG-AAAGAAAAGAGTTCCATTGCAAAAGAAC--TCATCCATATTCATTTATCCTATGG
436 AAATAG-GGCAAAGAAAAAATTTCCA-TGCAAAAGAACAATCATCCATA-TCATTTATCCTATAG
* * * * * *
650784 A-GAGAATAAGTTTTCTACCTGCC-AA-CACAACGT-GAAAAAGCTCATTACTAGAATCC-TGTT
498 AGGAGAATAAG-TTTATA-GTGCCTAATCACAA-GTAGATAAAGATCATTACCACAATCCATGTT
* * * *
650844 TGGCACATTGAGGCA-GAAC-TAGAGTTTA-CAAAATTGCTGGGAAGAAAGCTTTCTTACGAACA
560 TGGCACATTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAAAAAGCTTTCTTATGAA-A
* * * * *
650906 CCCAACCATCAATATC--GTATGCCTATGAGAGGACTAATTTATGGTGCCTAATCCAAAA-AGGA
624 -CCAAACATCAACATCGTGTATGCCTATGAGAAGACTAAGTTATGGTGCCTAATCCAAAAGAAGA
* * * * * * *
650968 -ATCAGGCTTTGTGCTGACTATTCATAT-TCATCTTATTTACGAGGACAACCTTTTGCTTCTATA
688 TATGAGGATTTGTG-TGTCTATTCATGTCT-GTCTTATTTACGA-GACAAAC-TTTGATTCTAT-
651031 AAAAAACGGTTGAACAGGAAATGCTTTTC-TGCGACATTAAAGCGTC-ATGCTCGCGTATCCTAT
748 AAAAAACGGTTGAA-A-GAAATGCTTTTCTTGCGACATTAAAGCGTCAATG-TCGCGTATCCTAT
* * * *
651094 TGAACGGAATGTGTTTTTGGTTCCCGATCTCGACAAGTGTGGAGATTGTTATGAGAATCAATGCT
810 TGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGATTGTTATGAGAATCAATGCT
* *
651159 TGCCTTATTTCAA-GA-ATG-AATTTTATTTTAA-GAAAATA-AGGCAAA--G--AAAAA-ATTT
875 TGCCTTATTT-AAGGAGATGTACTTTGATTTTAAGGAAAATAGAGG-AAAGGGAAAAAAAGATTT
* *
651214 TCATGC-AACGAAAA
938 CCATGCAAAAGAAAA
* * * * * * * *
651228 -CATCCATCTCATTTATCCTAAGGCGTAGAATACGTTTCTACTTGCTGAATCACAA-AGT-GATC
1 TCATCCATATCATTTATCCTATGGAGGAGAATAAGTTTATTCGTGCT-AATCACAACAGTAGA--
* * * * * *
651290 TGATGATCATTACTACAAT-CATGTTTGTCACATTTGAGGCAGGTACATATGTACTTTACCAAAA
63 TAAAGATCATTACCACAATCCATGTTTGGCACATTTGAGGCACGAACATA-G-ACTTTACCAAAA
* * * * *
651354 TTTGGTGGGAAAAAAAACGCATTCTTACGAAACCAACCCAT-CAATATCGTGTATGCTTATGAGG
126 -TTGGTGGG--AAAAAA-GCTTTCTTATGAAACCAAACCATCCAACATCGTGTATGCCTATGA-G
* * *
651418 AAGGACTAAGTTTTTATGGTTGCCTAATCCAAAGAAG-AATGAGGATTTTTTGTTGTCTATTCAT
186 AA-GACTAAG--TTTATGG-TGCCTAATCCAAA-AAGTTATAAGGA-TTTGTG-TGTCTATTCAT
* *
651482 GTCTGTCTTATTTAAGAGACAAAACTTTGCTTCTATAAAAAACGGTT
244 GTTTGTCTTATTTAAGAGAC-AAACTTTGATTCTATAAAAAACGGTT
651529 T
Statistics
Matches: 3471, Mismatches: 371, Indels: 602
0.78 0.08 0.14
Matches are distributed among these distances:
943 31 0.01
944 14 0.00
945 67 0.02
946 173 0.05
947 203 0.06
948 120 0.03
949 99 0.03
950 89 0.03
951 107 0.03
952 136 0.04
953 99 0.03
954 40 0.01
955 59 0.02
956 94 0.03
957 77 0.02
958 78 0.02
959 88 0.03
960 42 0.01
961 49 0.01
962 117 0.03
963 133 0.04
964 86 0.02
965 198 0.06
966 153 0.04
967 161 0.05
968 154 0.04
969 213 0.06
970 225 0.06
971 180 0.05
972 129 0.04
973 51 0.01
974 6 0.00
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (952 bp):
TCATCCATATCATTTATCCTATGGAGGAGAATAAGTTTATTCGTGCTAATCACAACAGTAGATAA
AGATCATTACCACAATCCATGTTTGGCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGT
GGGAAAAAAGCTTTCTTATGAAACCAAACCATCCAACATCGTGTATGCCTATGAGAAGACTAAGT
TTATGGTGCCTAATCCAAAAAGTTATAAGGATTTGTGTGTCTATTCATGTTTGTCTTATTTAAGA
GACAAACTTTGATTCTATAAAAAACGGTTGAAAGAAAGCTTTTCTTGCGACATCAAAGCGCAATG
TCGCGTATCCTATTGAAAGGAATGTTTTTTTGTTCCCAATCTCGAAAAGAGTGGAGACTGTTATG
AGAATCAATGCTTGCCTTATTTAAGGATGAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAAAT
TTCCATGCAAAAGAACAATCATCCATATCATTTATCCTATAGAGGAGAATAAGTTTATAGTGCCT
AATCACAAGTAGATAAAGATCATTACCACAATCCATGTTTGGCACATTGAGGCACGAACATAGAC
TTTACCAAAATTGGTGGGAAAAAAGCTTTCTTATGAAACCAAACATCAACATCGTGTATGCCTAT
GAGAAGACTAAGTTATGGTGCCTAATCCAAAAGAAGATATGAGGATTTGTGTGTCTATTCATGTC
TGTCTTATTTACGAGACAAACTTTGATTCTATAAAAAACGGTTGAAAGAAATGCTTTTCTTGCGA
CATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAAA
GAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAGATGTACTTTGATTTTAAGGA
AAATAGAGGAAAGGGAAAAAAAGATTTCCATGCAAAAGAAAA
Done.