Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2032
Parameters: 2 7 7 80 10 50 1000
Length:  51657

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2255--2303
23
2.1
24
85
11
66
24
4
2
69
1.17
2524--2585
22
2.9
21
79
9
65
40
0
1
58
1.08
3667--3727
18
3.5
19
83
16
80
62
0
0
37
0.96
3679--3726
5
9.8
5
86
8
64
60
0
0
39
0.97
4738--4825
11
8.3
11
69
15
60
38
2
2
56
1.24
4784--4825
16
2.7
16
77
3
50
40
0
0
59
0.97
6355--6396
22
1.9
22
90
9
68
61
0
0
38
0.96
7552--7611
29
2.0
31
87
9
90
56
0
1
41
1.09
7572--7616
23
1.9
23
86
4
63
62
0
0
37
0.96
7561--7629
20
3.6
19
74
16
54
56
0
1
42
1.08
12020--12044
12
2.1
12
100
0
50
16
8
32
44
1.76
12150--12202
20
2.6
20
81
3
70
32
16
9
41
1.81
12983--13008
2
13.0
2
100
0
52
50
0
0
50
1.00
18973--18997
2
12.5
2
100
0
50
52
0
0
48
1.00
20661--20698
2
19.5
2
89
5
60
50
2
0
47
1.15
21221--21274
25
2.2
25
83
6
65
38
0
0
61
0.96
21239--21285
15
3.1
15
78
9
51
36
0
0
63
0.94
21259--21309
21
2.5
20
81
9
66
39
0
0
60
0.97
21231--21280
16
3.2
16
78
13
59
32
0
0
68
0.90
21259--21352
21
4.4
22
72
19
58
43
0
0
56
0.99
21496--21556
21
3.0
22
81
11
69
27
0
1
70
0.97
21494--21559
10
6.8
10
76
20
61
27
0
1
71
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21504--21563
20
3.0
21
82
17
76
26
0
0
73
0.84
22708--22926
109
2.0
109
96
0
402
32
11
15
39
1.84
32955--33005
20
2.6
20
84
9
61
45
0
0
54
0.99
34003--34041
14
2.9
14
85
11
55
46
0
2
51
1.14
34790--34835
2
23.0
2
100
0
92
50
0
0
50
1.00
35093--35117
2
12.5
2
100
0
50
52
0
0
48
1.00
37946--37982
12
2.7
14
80
20
51
64
0
0
35
0.94
37971--38006
15
2.3
16
95
4
65
47
0
0
52
1.00
38493--38570
28
2.9
28
69
11
72
56
0
0
43
0.99
38771--38836
25
2.6
25
77
15
64
46
0
3
50
1.16
40234--40293
22
2.7
21
75
14
57
71
0
1
26
0.95
40232--40312
37
2.2
38
82
10
105
67
0
3
28
1.07
40251--40304
27
2.1
25
86
6
72
70
0
1
27
0.98
40234--40312
16
5.4
16
73
21
66
69
0
2
27
1.01
41915--41963
25
2.0
25
84
8
64
40
4
4
51
1.40
42209--42242
15
2.3
15
89
0
50
47
0
11
41
1.40
42652--42709
23
2.7
20
77
15
62
56
0
1
41
1.09
43055--43082
2
14.0
2
100
0
56
50
0
0
50
1.00
43274--43324
2
25.5
2
100
0
102
50
0
0
49
1.00
43328--43356
2
14.5
2
100
0
58
51
0
48
0
1.00
43721--43770
3
16.7
3
91
8
84
36
0
0
64
0.94
44109--44142
2
17.0
2
93
0
59
47
0
0
52
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44424--44463
20
2.0
20
95
0
71
52
10
12
25
1.70
44869--44940
28
2.5
28
82
13
85
56
1
0
41
1.07
44915--44943
11
2.7
11
94
5
51
58
0
0
41
0.98
44854--44944
16
6.1
16
67
24
56
58
1
0
40
1.05
45291--45332
19
2.2
19
91
0
66
45
0
4
50
1.23
46565--46656
35
2.5
36
74
13
98
51
0
0
48
1.00
48062--48109
2
24.5
2
82
4
62
45
2
4
47
1.33
49974--50013
17
2.3
18
82
4
55
62
12
0
25
1.30
50391--50441
25
2.0
25
85
7
68
45
0
1
52
1.12
50895--50932
2
19.0
2
100
0
76
50
0
0
50
1.00

Tables:   1

The End!