genome.fa.s2033.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2033
Parameters: 2 7 7 80 10 50 1000
Length:  39521

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3--1031	33	30.6	33	78	14	810	31	12	34	20	1.91
158--1031	35	25.8	33	78	12	759	32	12	34	20	1.90
158--1032	34	25.8	34	79	11	844	32	12	34	20	1.90
976--1221	125	2.0	125	83	9	315	28	16	30	24	1.96
1005--1218	31	6.9	30	84	7	193	28	16	29	25	1.97
2802--3588	43	17.1	43	77	16	712	29	19	26	24	1.98
2756--3583	49	17.8	49	78	13	871	29	19	26	24	1.98
2756--3588	92	9.0	92	89	6	1097	29	19	26	24	1.98
3583--3751	33	5.2	34	86	8	239	20	16	34	28	1.94
3583--3751	65	2.6	67	87	8	237	20	16	34	28	1.94
3753--4630	34	25.7	34	77	13	639	32	12	33	21	1.90
4295--4679	141	2.7	140	77	18	361	30	12	34	22	1.91
4661--4794	31	4.3	32	78	14	127	29	14	29	26	1.95
4711--4794	33	2.6	31	85	10	114	27	16	28	27	1.97
4752--4855	31	3.4	29	81	12	111	23	17	27	31	1.97
4774--4855	30	2.7	31	85	7	114	19	19	28	32	1.96
6146--6184	14	2.6	16	84	12	55	7	20	0	71	1.10
13084--13211	52	2.5	52	94	3	224	30	17	17	33	1.94
13220--13244	13	1.9	13	100	0	50	36	16	16	32	1.90
13285--13351	33	2.0	33	88	0	98	40	13	11	34	1.81
13307--13331	13	1.9	13	100	0	50	32	16	16	36	1.90
13559--14242	49	14.6	49	82	9	910	30	18	26	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13559--14247	92	7.4	92	95	1	1103	30	18	26	24	1.98
14242--14415	67	2.6	68	93	3	293	18	17	35	28	1.94
14242--14415	33	5.2	34	93	2	293	18	17	35	28	1.94
14397--15198	34	23.3	35	85	9	962	32	11	34	20	1.89
14397--15197	71	11.6	68	86	7	977	32	11	34	20	1.89
15039--15389	63	5.5	60	77	12	220	30	14	31	23	1.94
14420--15309	34	26.2	32	81	13	629	33	12	33	20	1.90
14874--15389	126	4.0	126	82	11	368	31	13	32	22	1.93
15077--15386	31	9.9	30	85	8	230	28	15	31	24	1.95
16940--18154	49	25.8	49	83	8	1573	30	18	26	24	1.98
16940--18159	92	13.0	92	93	2	1766	30	18	26	24	1.98
16940--18159	378	3.2	378	94	2	2016	30	18	26	24	1.98
18154--18327	67	2.6	68	92	3	284	18	17	34	28	1.94
18154--18327	33	5.2	34	92	2	284	18	17	34	28	1.94
18309--19310	34	29.3	35	84	10	1181	33	12	34	20	1.89
18309--19310	71	14.6	70	85	8	1202	33	12	34	20	1.89
18497--18555	27	2.1	28	84	3	75	30	15	32	22	1.94
19151--19501	63	5.5	60	77	12	220	30	14	31	23	1.94
18332--19421	34	32.2	32	80	14	732	33	12	33	20	1.90
18986--19501	126	4.0	126	82	11	368	31	13	32	22	1.93
19189--19498	31	9.9	30	85	8	230	28	15	31	24	1.95
21052--22266	49	25.8	49	83	8	1573	30	18	26	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21052--22271	92	13.0	92	93	2	1766	30	18	26	24	1.98
21052--22271	378	3.2	378	94	2	2016	30	18	26	24	1.98
22266--22439	67	2.6	68	92	3	284	18	17	34	28	1.94
22266--22439	33	5.2	34	92	2	284	18	17	34	28	1.94
22421--23423	34	29.3	35	84	10	1183	33	12	34	20	1.90
22609--22667	27	2.1	28	84	3	75	30	15	32	22	1.94
22636--23423	107	7.6	103	86	7	1016	33	12	34	20	1.89
23264--23614	63	5.5	60	77	12	220	30	14	31	23	1.94
22444--23534	34	32.2	32	80	13	734	33	12	33	20	1.90
23099--23614	126	4.0	126	82	11	368	31	13	32	22	1.93
23302--23611	31	9.9	30	85	8	230	28	15	31	24	1.95
24906--24951	15	2.9	15	87	6	56	8	23	0	67	1.18
31852--31979	52	2.5	52	93	3	215	31	17	17	32	1.94
31852--31999	52	2.9	50	85	12	185	32	17	18	31	1.94
31988--32012	13	1.9	13	100	0	50	36	16	16	32	1.90
32327--33010	49	14.6	49	83	9	928	30	18	25	25	1.98
32327--33015	92	7.4	92	96	1	1121	30	18	26	24	1.98
33010--33177	67	2.5	68	93	2	279	18	18	33	29	1.95
33010--33177	33	5.0	34	93	1	279	18	18	33	29	1.95
33185--34338	34	33.7	35	82	10	1105	33	12	34	20	1.89
33319--33377	27	2.1	28	84	3	75	30	15	32	22	1.94
33346--34338	34	28.8	34	85	7	1169	32	11	35	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33185--34371	177	7.0	175	86	9	1386	33	12	34	20	1.90
34120--34529	63	6.4	61	77	12	227	30	14	31	23	1.94
33415--34530	140	8.3	124	79	13	612	32	12	33	20	1.91
34217--34526	31	9.9	30	83	9	230	29	15	31	24	1.95
35822--35862	14	2.8	14	88	7	55	7	21	0	70	1.11

Tables:   1

The End!