Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2034
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85416
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Found at i:1495 original size:25 final size:21
Alignment explanation
Indices: 1466--1524 Score: 73
Period size: 21 Copynumber: 2.6 Consensus size: 21
1456 AGAATGCTGT
1466 ATTAAGGGGGAGAAATTTTTCTTTG
1 ATTAAGGGGGAGAAA---TT-TTTG
*
1491 ATTAAGGGGAAGAAATTTTTG
1 ATTAAGGGGGAGAAATTTTTG
1512 ATTAAGGGGGAGA
1 ATTAAGGGGGAGA
1525 GATAAGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
21 16 0.50
22 2 0.06
25 14 0.44
ACGTcount: A:0.34, C:0.02, G:0.32, T:0.32
Consensus pattern (21 bp):
ATTAAGGGGGAGAAATTTTTG
Found at i:2199 original size:20 final size:20
Alignment explanation
Indices: 2170--2207 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
2160 GTATGTATCG
*
2170 ATAAATTGTATCGATACACC
1 ATAAAATGTATCGATACACC
2190 ATAAAATGTATCGATACA
1 ATAAAATGTATCGATACA
2208 TTGGCTTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.16, G:0.11, T:0.29
Consensus pattern (20 bp):
ATAAAATGTATCGATACACC
Found at i:2204 original size:33 final size:32
Alignment explanation
Indices: 2138--2210 Score: 92
Period size: 33 Copynumber: 2.2 Consensus size: 32
2128 TGGCAGTAGC
**
2138 TAAACTTGTATCGATACACACAGTATGTATCGA
1 TAAA-TTGTATCGATACACACAAAATGTATCGA
*
2171 TAAATTGTATCGATACACCATAAAATGTATCGA
1 TAAATTGTATCGATACA-CACAAAATGTATCGA
*
2204 TACATTG
1 TAAATTG
2211 GCTTGTAACG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
32 13 0.37
33 22 0.63
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (32 bp):
TAAATTGTATCGATACACACAAAATGTATCGA
Found at i:2972 original size:20 final size:20
Alignment explanation
Indices: 2947--2991 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
2937 TAAGCTTTCA
*
2947 GATACAATGCAATCTGTATC
1 GATACAATGAAATCTGTATC
* * *
2967 GATACATTTAAATGTGTATC
1 GATACAATGAAATCTGTATC
2987 GATAC
1 GATAC
2992 TTTTCAGGGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.33
Consensus pattern (20 bp):
GATACAATGAAATCTGTATC
Found at i:6605 original size:57 final size:59
Alignment explanation
Indices: 6467--6621 Score: 161
Period size: 58 Copynumber: 2.7 Consensus size: 59
6457 AATGATAAAG
* ** * * * * **
6467 GTGCTAATGTGCTGATTCAGGGCTAGTGATATTGGGCTTTATAAAGAAGGTTTTGACTA
1 GTGCCAATGTGCTGATTCAAAGCTAGTGACATTGGGCTTGAGAAAAAAGGTTTTGAAAA
* *
6526 GTGTCATTGTGCTGATTCAAAGCT-GTGACATTGGGCTTGAGAAAAAAGG-TTTGAAAA
1 GTGCCAATGTGCTGATTCAAAGCTAGTGACATTGGGCTTGAGAAAAAAGGTTTTGAAAA
* * **
6583 GTGCCAATGTGTTGATTCAAAGCCAACGACATTGGGCTT
1 GTGCCAATGTGCTGATTCAAAGCTAGTGACATTGGGCTT
6622 AGAGGGAGAT
Statistics
Matches: 78, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
57 26 0.33
58 33 0.42
59 19 0.24
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.32
Consensus pattern (59 bp):
GTGCCAATGTGCTGATTCAAAGCTAGTGACATTGGGCTTGAGAAAAAAGGTTTTGAAAA
Found at i:6683 original size:32 final size:32
Alignment explanation
Indices: 6639--7012 Score: 270
Period size: 32 Copynumber: 12.2 Consensus size: 32
6629 GATCCCACCA
* *
6639 ACTTGTATGGGCTTTTGAGAA-GGTTGCCACTG
1 ACTTGTGTGGGC-TTTGAAAAGGGTTGCCACTG
* * * **
6671 ACTTATGTGGGCTTTTGAGAAGGGTTACCACCA
1 ACTTGTGTGGGC-TTTGAAAAGGGTTGCCACTG
* * **
6704 ACTTGTATGGGCTTTG-AAAGGGTTGCTACCA
1 ACTTGTGTGGGCTTTGAAAAGGGTTGCCACTG
* **** **
6735 ACTTGTATGGGCTTTTGAAAATAAATGCCACCA
1 ACTTGTGTGGGC-TTTGAAAAGGGTTGCCACTG
* *
6768 ACTTGTGTGTGCTTTAAAAAGGGTTGCCACTG
1 ACTTGTGTGGGCTTTGAAAAGGGTTGCCACTG
*
6800 ACTTGTGTGGGCTTT-AAAAGGGTTGCCACCG
1 ACTTGTGTGGGCTTTGAAAAGGGTTGCCACTG
*
6831 ACTTGTGTGGGCTTT-AAATAGGGTTGCCACCG
1 ACTTGTGTGGGCTTTGAAA-AGGGTTGCCACTG
* *
6863 ACTTGTGTGGGCTTTAAAAAGGGATGCCACTG
1 ACTTGTGTGGGCTTTGAAAAGGGTTGCCACTG
*
6895 AC-T-TATGGGCTTTG--AAGGG-TGCCACTG
1 ACTTGTGTGGGCTTTGAAAAGGGTTGCCACTG
* * *
6922 AC-T-TATGGGATTTG-AAAGGG-TGCCACTA
1 ACTTGTGTGGGCTTTGAAAAGGGTTGCCACTG
* *
6950 AC-T-TGTGGGCTTT-AAAAGGG-TGCTACTA
1 ACTTGTGTGGGCTTTGAAAAGGGTTGCCACTG
*
6978 AC-T-TATGGGCTTT-AAGAA-GG-TGCCACTG
1 ACTTGTGTGGGCTTTGAA-AAGGGTTGCCACTG
7006 ACTTGTG
1 ACTTGTG
7013 GGCTTTAGGA
Statistics
Matches: 293, Mismatches: 39, Indels: 22
0.83 0.11 0.06
Matches are distributed among these distances:
27 21 0.07
28 65 0.22
29 3 0.01
30 10 0.03
31 58 0.20
32 95 0.32
33 41 0.14
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (32 bp):
ACTTGTGTGGGCTTTGAAAAGGGTTGCCACTG
Found at i:6773 original size:33 final size:32
Alignment explanation
Indices: 6633--6782 Score: 106
Period size: 33 Copynumber: 4.7 Consensus size: 32
6623 GAGGGAGATC
**
6633 CCACCAACTTGTATGGGCTTTTGAGAAG-GTTG
1 CCACCAACTTGTATGGGCTTTTGA-AAGAAATG
** * * *** *
6665 CCACTGACTTATGTGGGCTTTTGAGAAGGGTTA
1 CCACCAACTTGTATGGGCTTTTGA-AAGAAATG
***
6698 CCACCAACTTGTATGGGC-TTTGAAAGGGTTG
1 CCACCAACTTGTATGGGCTTTTGAAAGAAATG
* *
6729 CTACCAACTTGTATGGGCTTTTGAAAATAAATG
1 CCACCAACTTGTATGGGCTTTTG-AAAGAAATG
* *
6762 CCACCAACTTGTGTGTGCTTT
1 CCACCAACTTGTATGGGCTTT
6783 AAAAAGGGTT
Statistics
Matches: 97, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
31 24 0.25
32 33 0.34
33 40 0.41
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (32 bp):
CCACCAACTTGTATGGGCTTTTGAAAGAAATG
Found at i:6790 original size:96 final size:96
Alignment explanation
Indices: 6633--6919 Score: 320
Period size: 96 Copynumber: 3.0 Consensus size: 96
6623 GAGGGAGATC
* * * * * *
6633 CCACCAACTTGTATGGGCTTTTGAGAA-GGTTGCCACTGACTTATGTGGGCTTTTGAGAAGGGTT
1 CCACCAACTTGTATGGGCTTTTGAAAATAGTTGCCACCGACTTGTGTGGGC-TTTAAAAAGGGTT
* **
6697 ACCACCAACTTGTATGGGCTTTGAAAGGGTTG
65 GCCACTGACTTGTATGGGCTTTGAAAGGGTTG
* ** * *
6729 CTACCAACTTGTATGGGCTTTTGAAAATAAATGCCACCAACTTGTGTGTGCTTTAAAAAGGGTTG
1 CCACCAACTTGTATGGGCTTTTGAAAATAGTTGCCACCGACTTGTGTGGGCTTTAAAAAGGGTTG
* *
6794 CCACTGACTTGTGTGGGCTTTAAAAGGGTTG
66 CCACTGACTTGTATGGGCTTTGAAAGGGTTG
* * *
6825 CCACCGACTTGTGTGGGC-TTT--AAATAGGGTTGCCACCGACTTGTGTGGGCTTTAAAAAGGGA
1 CCACCAACTTGTATGGGCTTTTGAAAATA--GTTGCCACCGACTTGTGTGGGCTTTAAAAAGGGT
6887 TGCCACTGAC-T-TATGGGCTTTG-AAGGG-TG
64 TGCCACTGACTTGTATGGGCTTTGAAAGGGTTG
6916 CCAC
1 CCAC
6920 TGACTTATGG
Statistics
Matches: 162, Mismatches: 26, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
91 6 0.04
92 5 0.03
93 14 0.09
94 1 0.01
95 42 0.26
96 78 0.48
97 16 0.10
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.30
Consensus pattern (96 bp):
CCACCAACTTGTATGGGCTTTTGAAAATAGTTGCCACCGACTTGTGTGGGCTTTAAAAAGGGTTG
CCACTGACTTGTATGGGCTTTGAAAGGGTTG
Found at i:6940 original size:28 final size:28
Alignment explanation
Indices: 6785--7061 Score: 202
Period size: 28 Copynumber: 9.4 Consensus size: 28
6775 TGTGCTTTAA
* *
6785 AAAGGGTTGCCACTGACTTGTGTGGGCTTTA
1 AAAGGG-TGCCACTGAC-T-TATGGGCTTTG
* * *
6816 AAAGGGTTGCCACCGACTTGTGTGGGCTTTA
1 AAAGGG-TGCCACTGAC-T-TATGGGCTTTG
* * *
6847 AATAGGGTTGCCACCGACTTGTGTGGGCTTTAA
1 AA-AGGG-TGCCACTGAC-T-TATGGGCTTT-G
6880 AAAGGGATGCCACTGACTTATGGGCTTTG
1 AAAGGG-TGCCACTGACTTATGGGCTTTG
*
6909 -AAGGGTGCCACTGACTTATGGGATTTG
1 AAAGGGTGCCACTGACTTATGGGCTTTG
* * *
6936 AAAGGGTGCCACTAACTTGTGGGCTTTA
1 AAAGGGTGCCACTGACTTATGGGCTTTG
* *
6964 AAAGGGTGCTACTAACTTATGGGCTTT-
1 AAAGGGTGCCACTGACTTATGGGCTTTG
* *
6991 AAGAAGGTGCCACTGACTTGTGGGCTTTAGG
1 AA-AGGGTGCCACTGACTTATGGGCTTT--G
* * *
7022 AAAGGGCGCCA-TAGAGTTATGGACTTTG
1 AAAGGGTGCCACT-GACTTATGGGCTTTG
7050 TAAA-GGTGCCAC
1 -AAAGGGTGCCAC
7062 GGAGTTGTAG
Statistics
Matches: 214, Mismatches: 22, Indels: 22
0.83 0.09 0.09
Matches are distributed among these distances:
27 23 0.11
28 81 0.38
29 4 0.02
30 27 0.13
31 35 0.16
32 41 0.19
33 3 0.01
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (28 bp):
AAAGGGTGCCACTGACTTATGGGCTTTG
Found at i:7066 original size:28 final size:29
Alignment explanation
Indices: 6994--7106 Score: 93
Period size: 30 Copynumber: 3.9 Consensus size: 29
6984 GGGCTTTAAG
* * * *
6994 AAGGTGCCACTGACTTGTGGGCTTTAGGAA
1 AAGGTGCCACAGAGTTGTGGACTTT-GAAA
* * * * *
7024 AGGGCGCCATAGAGTTATGGACTTTG-TA
1 AAGGTGCCACAGAGTTGTGGACTTTGAAA
* *
7052 AAGGTGCCACGGAGTTGTAGACTTTTGAAA
1 AAGGTGCCACAGAGTTGTGGAC-TTTGAAA
*
7082 AAGGTGCCACAGAGTCGTGGACTTT
1 AAGGTGCCACAGAGTTGTGGACTTT
7107 AAGAAATGAT
Statistics
Matches: 63, Mismatches: 18, Indels: 5
0.73 0.21 0.06
Matches are distributed among these distances:
28 17 0.27
29 8 0.13
30 38 0.60
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.27
Consensus pattern (29 bp):
AAGGTGCCACAGAGTTGTGGACTTTGAAA
Found at i:7120 original size:30 final size:29
Alignment explanation
Indices: 7081--7187 Score: 90
Period size: 30 Copynumber: 3.6 Consensus size: 29
7071 GACTTTTGAA
* *
7081 AAAGGTGCCACAGAGTCGTGGACTTTAAG
1 AAAGATGCCACAGAGTCATGGACTTTAAG
* *
7110 AAATGATGCCATTA-AGTCATGGACTTTGAG
1 AAA-GATGCCA-CAGAGTCATGGACTTTAAG
* ** *
7140 AAGGGATGCCATTGAGTCATGGCCTTTAAG
1 AA-AGATGCCACAGAGTCATGGACTTTAAG
*
7170 AAGAGATGCCACTGAGTC
1 AA-AGATGCCACAGAGTC
7188 GTAAACTTTG
Statistics
Matches: 64, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
29 4 0.06
30 59 0.92
31 1 0.02
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (29 bp):
AAAGATGCCACAGAGTCATGGACTTTAAG
Found at i:7150 original size:60 final size:60
Alignment explanation
Indices: 7086--7210 Score: 153
Period size: 60 Copynumber: 2.1 Consensus size: 60
7076 TTGAAAAAGG
* * **
7086 TGCCACAGAGTCGTGGACTTTAAGAA-ATGATGCCATTAAGTCATGGACTTTGAGAAGGGA
1 TGCCACAGAGTCATGGACTTTAAGAAGA-GATGCCACTAAGTCATAAACTTTGAGAAGGGA
** * * *
7146 TGCCATTGAGTCATGGCCTTTAAGAAGAGATGCCACTGAGTCGTAAACTTTGAGAAGGGA
1 TGCCACAGAGTCATGGACTTTAAGAAGAGATGCCACTAAGTCATAAACTTTGAGAAGGGA
7206 TGCCA
1 TGCCA
7211 TTGGGGGTGT
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
60 54 0.98
61 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (60 bp):
TGCCACAGAGTCATGGACTTTAAGAAGAGATGCCACTAAGTCATAAACTTTGAGAAGGGA
Found at i:7202 original size:30 final size:30
Alignment explanation
Indices: 7114--7210 Score: 95
Period size: 30 Copynumber: 3.2 Consensus size: 30
7104 TTTAAGAAAT
* * **
7114 GATGCCATTAAGTCATGGACTTTGAGAAGG
1 GATGCCACTGAGTCATAAACTTTGAGAAGG
* *** * *
7144 GATGCCATTGAGTCATGGCCTTTAAGAAGA
1 GATGCCACTGAGTCATAAACTTTGAGAAGG
*
7174 GATGCCACTGAGTCGTAAACTTTGAGAAGG
1 GATGCCACTGAGTCATAAACTTTGAGAAGG
7204 GATGCCA
1 GATGCCA
7211 TTGGGGGTGT
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (30 bp):
GATGCCACTGAGTCATAAACTTTGAGAAGG
Found at i:10689 original size:20 final size:19
Alignment explanation
Indices: 10663--10740 Score: 84
Period size: 20 Copynumber: 3.8 Consensus size: 19
10653 TCAAAAACCC
*
10663 AAAATGTATCGATACAATG
1 AAAATGTATCGATACAATT
*
10682 AGAAATGTATCAATACAATT
1 A-AAATGTATCGATACAATT
*
10702 ATAAGCATGTATCGATACATTT
1 A-AA--ATGTATCGATACAATT
10724 AATAATGTATCGATACA
1 AA-AATGTATCGATACA
10741 TTTCCTTGGC
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
19 1 0.02
20 32 0.64
21 1 0.02
22 16 0.32
ACGTcount: A:0.45, C:0.12, G:0.13, T:0.31
Consensus pattern (19 bp):
AAAATGTATCGATACAATT
Found at i:15133 original size:79 final size:79
Alignment explanation
Indices: 15035--15375 Score: 359
Period size: 79 Copynumber: 4.3 Consensus size: 79
15025 GGTATTCTAG
* * * *
15035 AAATAAAATTGGGGTTGGAGTATCCCCTTGGAAATAACAGGGTTGGAGTATCCCTGATTATAAAA
1 AAATAAAATCGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCTGATTATGAAA
15100 AATTAGTGTTTTGA
66 AATTAGTGTTTTGA
* * * *
15114 AAATAAAATCAGGGTTGGAGTATCCCTTCGGAAATAACAGGGTTGGAGTATCCCTGATTAT-AGA
1 AAATAAAATCGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCTGATTATGAAA
** *
15178 AATCGGTGTTTTAA
66 AATTAGTGTTTTGA
** * *
15192 AAAT-AAATCGGGGTTGGAGTATCCCCTCGAAAATAATGGGGTTGGAGTATCCCCT-ATTGTGGA
1 AAATAAAATCGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTAT-CCCTGATTATGAA
* *
15255 AAA-TCGATGCTTT-A
65 AAATTAG-TGTTTTGA
*** * * ** * *
15269 GAAATAAGGCCGGGGTTGGAGTATCTCCGCGAAAATAATGGGGTTGGAGTATCCCCGATTGTGAA
1 -AAATAAAATCGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCTGATTATGAA
* * *
15334 AAATTAATATTTTGG
65 AAATTAGTGTTTTGA
15349 AAATAAAATCGGGGTTGGAGTATCCCC
1 AAATAAAATCGGGGTTGGAGTATCCCC
15376 ATGATGAAAA
Statistics
Matches: 219, Mismatches: 35, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
77 47 0.21
78 36 0.16
79 135 0.62
80 1 0.00
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (79 bp):
AAATAAAATCGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCTGATTATGAAA
AATTAGTGTTTTGA
Found at i:15235 original size:28 final size:30
Alignment explanation
Indices: 15191--15246 Score: 98
Period size: 28 Copynumber: 1.9 Consensus size: 30
15181 CGGTGTTTTA
15191 AAAATAAATCGGGGTTGGAGTATCCCCTCG
1 AAAATAAATCGGGGTTGGAGTATCCCCTCG
15221 AAAAT-AAT-GGGGTTGGAGTATCCCCT
1 AAAATAAATCGGGGTTGGAGTATCCCCT
15247 ATTGTGGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
28 18 0.69
29 3 0.12
30 5 0.19
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (30 bp):
AAAATAAATCGGGGTTGGAGTATCCCCTCG
Found at i:18451 original size:40 final size:40
Alignment explanation
Indices: 18342--19271 Score: 382
Period size: 45 Copynumber: 21.7 Consensus size: 40
18332 GAAGAGGGCA
* *
18342 TCCTGCTCTTTGAGGACAAAGGAAAAA-AGAATGAAATGGG
1 TCCTGCTCTTTGAGGACAAAGGAAAAAGA-AAGGAAATGTG
* * * * *
18382 TCTTGTTCCTTGAGGACCAAGAAAGAAAGAAAGGAAA-GTG
1 TCCTGCTCTTTGAGGACAAAGGAA-AAAGAAAGGAAATGTG
* * *
18422 TCCTGCTTTTTGAGGACAAAGTGAAAAAG--A-G-CA--CG
1 TCCTGCTCTTTGAGGACAAAG-GAAAAAGAAAGGAAATGTG
* *
18457 TCCTGCT-TTTCGAGGACAAAGGAAAAAAGGAAAATGAAATGTT
1 TCCTGCTCTTT-GAGGACAAAGG-AAAAA-G-AAAGGAAATGTG
* *
18500 TCCTGCTCTTTGAGGACAAAAGAAAAAGAAAAAGAAAGTGTG
1 TCCTGCTCTTTGAGGACAAAGGAAAAAG-AAAGGAAA-TGTG
* *
18542 TCCTGCTCTTTGAGGACAATAGGAAAAATAAGGAAATGAAGTGTG
1 TCCTGCTCTTTGAGGACAA-AGG--AAA-AA-GAAAGGAAATGTG
* * *
18587 TCCTCCTCTTTGAGGACAAAAGGGGAAAAGAAGGGAATGGAATGTG
1 TCCTGCTCTTTGAGGAC-AAA-GGAAAAAGAAAGG-A---AATGTG
* * ** *
18633 TCCTACTCTTTGAGGAGAAAGGAGAAAAGGAAAATAAAGTGCG
1 TCCTGCTCTTTGAGGACAAAGGA-AAAA-GAAAGGAAA-TGTG
* *
18676 TCCTGCTCTTTGAAGACAAAAGGGAAAAG-AAGGAAATGAAGTGCG
1 TCCTGCTCTTTGAGGAC-AAAGGAAAAAGAAAGGAAAT---GT--G
* * * *
18721 TCTTGATCTTTGAGGACATAAGGGGAAAAGAAGGGAATGGAATGTG
1 TCCTGCTCTTTGAGGACA-AA-GGAAAAAGAAAGG-A---AATGTG
* * *
18767 TCCTACTCTTTGAGGACAAAGGAGAAAAGGAATA-TAAAGTGCG
1 TCCTGCTCTTTGAGGACAAAGGA-AAAA-GAA-AGGAAA-TGTG
* * *
18810 TCCTGCTCTTTGAGGACAAAAAGGAAAAGAAAGAAATGAAGTGCG
1 TCCTGCTCTTTGAGGAC--AAAGG--AA-AAAGAAAGGAAATGTG
* * *
18855 TCCTGCTCTTTGAGGACAAAAGGGGAAGAGAAGGGACTGGAATGTG
1 TCCTGCTCTTTGAGGAC-AAA-GGAAAAAGAAAGGA----AATGTG
* ** *
18901 TCCTGCTCTTTGAGGACAAAGGGGGAAAAGGAAAATAAAGTGCG
1 TCCTGCTCTTTGAGGACAAA---GGAAAAAGAAAGGAAA-TGTG
* * *
18945 TCCTACTTTTTGAGGACAAAAGGGAAAAGAAA-GAAATGAAGTG
1 TCCTGCTCTTTGAGGAC-AAAGGAAAAAGAAAGGAAAT---GTG
* * * **
18988 CATCCTGCTCTTTGAGGACAAAAGAAAAAAGGAAA-AAAAGGCA
1 --TCCTGCTCTTTGAGGAC-AAAGGAAAAA-GAAAGGAAATGTG
** **
19031 TCCTGCTCTTTGAAAACAAAGGAAAAAGGAAATTAAATGTG
1 TCCTGCTCTTTGAGGACAAAGGAAAAA-GAAAGGAAATGTG
* * * * *
19072 TCCTACTTTTTTAGGACAAAGGAAAAAGGAGAA-TAAAGTGCG
1 TCCTGCTCTTTGAGGACAAAGGAAAAA-GA-AAGGAAA-TGTG
* *
19114 TCCTGCTCTTTGAGAACTATAAGGGAAAAG-AAGGAAATGAAGTGCG
1 TCCTGCTCTTTGAGGAC-A-AAGGAAAAAGAAAGGAAAT---GT--G
* * ** * * **
19160 CCCTACTCTTTGAGGGTAAAGG-AAAA-AAAGAAAAGGCA
1 TCCTGCTCTTTGAGGACAAAGGAAAAAGAAAGGAAATGTG
* *
19198 TCTTGCTCTTTGAGGACAAAAGGGAAAGAAAGGAAATGAAATGTG
1 TCCTGCTCTTTGAGGAC-AAA-GG-AA-AAA-GAAAGGAAATGTG
19243 TCCTGCTCTTTGAGGACAAAGGAGAAAAG
1 TCCTGCTCTTTGAGGACAAAGGA-AAAAG
19272 GAAAAGGCAT
Statistics
Matches: 679, Mismatches: 124, Indels: 173
0.70 0.13 0.18
Matches are distributed among these distances:
34 4 0.01
35 23 0.03
36 2 0.00
37 1 0.00
38 13 0.02
39 4 0.01
40 61 0.09
41 81 0.12
42 79 0.12
43 87 0.13
44 53 0.08
45 139 0.20
46 109 0.16
47 17 0.03
48 3 0.00
51 3 0.00
ACGTcount: A:0.40, C:0.13, G:0.27, T:0.20
Consensus pattern (40 bp):
TCCTGCTCTTTGAGGACAAAGGAAAAAGAAAGGAAATGTG
Found at i:18599 original size:45 final size:43
Alignment explanation
Indices: 18455--19275 Score: 658
Period size: 45 Copynumber: 18.8 Consensus size: 43
18445 AAAAAGAGCA
*
18455 CGTCCTGCT-TTTCGAGGACAAA-GGAAAAAAGGAAAATGAAATG
1 CGTCCTGCTCTTT-GAGGACAAAGGGAAAAAAGG-AAATGAAGTG
** * * *
18498 TTTCCTGCTCTTTGAGGACAAA-AG-AAAAAGAAAAAGAAAGTG
1 CGTCCTGCTCTTTGAGGACAAAGGGAAAAAAGGAAATG-AAGTG
* *
18540 TGTCCTGCTCTTTGAGGACAATAGGAAAAATAAGGAAATGAAGTG
1 CGTCCTGCTCTTTGAGGACAA-AGGGAAAA-AAGGAAATGAAGTG
* * *
18585 TGTCCTCCTCTTTGAGGACAAAAGGGGAAAAGAAGGGAATGGAA-TG
1 CGTCCTGCTCTTTGAGGAC-AAA-GGGAAAA-AAGGAAAT-GAAGTG
* * * * *
18631 TGTCCTACTCTTTGAGGAGAAA-GGAGAAAAGGAAAATAAAGTG
1 CGTCCTGCTCTTTGAGGACAAAGGGAAAAAAGG-AAATGAAGTG
*
18674 CGTCCTGCTCTTTGAAGACAAAAGGGAAAAGAAGGAAATGAAGTG
1 CGTCCTGCTCTTTGAGGAC-AAAGGGAAAA-AAGGAAATGAAGTG
* * *
18719 CGTCTTGATCTTTGAGGACATAAGGGGAAAAGAAGGGAATGGAA-TG
1 CGTCCTGCTCTTTGAGGACA-AA-GGGAAAA-AAGGAAAT-GAAGTG
* * * *
18765 TGTCCTACTCTTTGAGGACAAA-GGAGAAAAGGAATATAAAGTG
1 CGTCCTGCTCTTTGAGGACAAAGGGAAAAAAGGAA-ATGAAGTG
* *
18808 CGTCCTGCTCTTTGAGGACAAAAAGGAAAAGAAAGAAATGAAGTG
1 CGTCCTGCTCTTTGAGGAC-AAAGGGAAAA-AAGGAAATGAAGTG
* * *
18853 CGTCCTGCTCTTTGAGGACAAAAGGGGAAGAGAAGGGACTGGAA-TG
1 CGTCCTGCTCTTTGAGGAC-AAA-GGGAA-AAAAGGAAAT-GAAGTG
* ** *
18899 TGTCCTGCTCTTTGAGGACAAAGGGGGAAAAGGAAAATAAAGTG
1 CGTCCTGCTCTTTGAGGACAAAGGGAAAAAAGG-AAATGAAGTG
* * *
18943 CGTCCTACTTTTTGAGGACAAAAGGGAAAAGAAAGAAATGAAGTG
1 CGTCCTGCTCTTTGAGGAC-AAAGGGAAAA-AAGGAAATGAAGTG
* * **
18988 CATCCTGCTCTTTGAGGACAAA-AGAAAAAAGGAAAAAAAG-G
1 CGTCCTGCTCTTTGAGGACAAAGGGAAAAAAGGAAATGAAGTG
* ** * *
19029 CATCCTGCTCTTTGAAAACAAA-GG-AAAAAGGAAATTAAATG
1 CGTCCTGCTCTTTGAGGACAAAGGGAAAAAAGGAAATGAAGTG
* * * * *
19070 TGTCCTACTTTTTTAGGACAAA-GG-AAAAAGGAGAATAAAGTG
1 CGTCCTGCTCTTTGAGGACAAAGGGAAAAAAGGA-AATGAAGTG
*
19112 CGTCCTGCTCTTTGAGAACTATAAGGGAAAAGAAGGAAATGAAGTG
1 CGTCCTGCTCTTTGAGGAC-A-AAGGGAAAA-AAGGAAATGAAGTG
* * ** *
19158 CGCCCTACTCTTTGAGGGTAAA-GGAAAAAAAG-AA--AAG-G
1 CGTCCTGCTCTTTGAGGACAAAGGGAAAAAAGGAAATGAAGTG
* * *
19196 CATCTTGCTCTTTGAGGACAAAAGGGAAAGAAAGGAAATGAAATG
1 CGTCCTGCTCTTTGAGGAC-AAAGGGAAA-AAAGGAAATGAAGTG
* *
19241 TGTCCTGCTCTTTGAGGACAAA-GGAGAAAAGGAAA
1 CGTCCTGCTCTTTGAGGACAAAGGGAAAAAAGGAAA
19276 AGGCATCCTA
Statistics
Matches: 628, Mismatches: 107, Indels: 87
0.76 0.13 0.11
Matches are distributed among these distances:
38 14 0.02
39 6 0.01
40 17 0.03
41 58 0.09
42 86 0.14
43 92 0.15
44 45 0.07
45 155 0.25
46 140 0.22
47 15 0.02
ACGTcount: A:0.40, C:0.12, G:0.27, T:0.20
Consensus pattern (43 bp):
CGTCCTGCTCTTTGAGGACAAAGGGAAAAAAGGAAATGAAGTG
Found at i:18686 original size:134 final size:132
Alignment explanation
Indices: 18455--19271 Score: 843
Period size: 134 Copynumber: 6.2 Consensus size: 132
18445 AAAAAGAGCA
* * * *
18455 CGTCCTGCT-TTTCGAGGAC-AAA--GGAAAA-AAGGAAAATGAAATGTTTCCTGCTCTTTGAGG
1 CGTCCTGCTCTTT-GAGGACAAAAGGGGAAAAGAAGG-GAATGGAATGTGTCCTACTCTTTGAGG
* * * * *
18515 ACAAAAGAAAAAGAAAAAGAAAGTGTGTCCTGCTCTTTGAGGACAATAGGAAAAATAAGGAAATG
64 ACAAAGGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGGAAAAA-AAGGAAATG
18580 AAGTG
128 AAGTG
* * *
18585 TGTCCTCCTCTTTGAGGACAAAAGGGGAAAAGAAGGGAATGGAATGTGTCCTACTCTTTGAGGAG
1 CGTCCTGCTCTTTGAGGACAAAAGGGGAAAAGAAGGGAATGGAATGTGTCCTACTCTTTGAGGAC
* *
18650 AAAGGAGAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAAGACAAAAGGGAAAAGAAGGAAATGA
66 AAAGGA-AAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAA-GGAAAAAAAGGAAATGA
18715 AGTG
129 AGTG
* * *
18719 CGTCTTGATCTTTGAGGACATAAGGGGAAAAGAAGGGAATGGAATGTGTCCTACTCTTTGAGGAC
1 CGTCCTGCTCTTTGAGGACAAAAGGGGAAAAGAAGGGAATGGAATGTGTCCTACTCTTTGAGGAC
*
18784 AAAGGAGAAAAGGAATATAAAGTGCGTCCTGCTCTTTGAGGACAAAAAGGAAAAGAAA-GAAATG
66 AAAGGA-AAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGAC-AAAAGGAAAA-AAAGGAAATG
18848 AAGTG
128 AAGTG
* * *
18853 CGTCCTGCTCTTTGAGGACAAAAGGGGAAGAGAAGGGACTGGAATGTGTCCTGCTCTTTGAGGAC
1 CGTCCTGCTCTTTGAGGACAAAAGGGGAAAAGAAGGGAATGGAATGTGTCCTACTCTTTGAGGAC
* * *
18918 AAAGGGGGAAAAGGAAAATAAAGTGCGTCCTACTTTTTGAGGACAAAAGGGAAAAGAAA-GAAAT
66 AAA--GGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAA-GGAAAA-AAAGGAAAT
18982 GAAGTG
127 GAAGTG
* *** * ** * **
18988 CATCCTGCTCTTTGAGGACAAAA---GAAAA-AA-GGAAAAAAAGGCATCCTGCTCTTTGAAAAC
1 CGTCCTGCTCTTTGAGGACAAAAGGGGAAAAGAAGGGAATGGAATGTGTCCTACTCTTTGAGGAC
* * * * * *
19048 AAAGGAAAAAGGAAATTAAA-TGTGTCCTACTTTTTTAGGAC-AAAGG--AAAAAGGAGAATAAA
66 AAAGGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGGAAAAAAAGGA-AATGAA
19109 GTG
130 GTG
* * * * *
19112 CGTCCTGCTCTTTGAGAACTATAA-GGGAAAAGAAGGAAAT-GAAGTGCGCCCTACTCTTTGAGG
1 CGTCCTGCTCTTTGAGGAC-AAAAGGGGAAAAGAAGGGAATGGAA-TGTGTCCTACTCTTTGAGG
** * * * *
19175 GTAAAGGAAAAA--AAGA-AAAG-GCATCTTGCTCTTTGAGGACAAAAGGGAAAGAAAGGAAATG
64 ACAAAGGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAA-GGAAAAAAAGGAAATG
*
19236 AAATG
128 AAGTG
* *
19241 TGTCCTGCTCTTTGAGGAC-AAAGGAGAAAAG
1 CGTCCTGCTCTTTGAGGACAAAAGGGGAAAAG
19272 GAAAAGGCAT
Statistics
Matches: 583, Mismatches: 78, Indels: 54
0.82 0.11 0.08
Matches are distributed among these distances:
122 3 0.01
123 4 0.01
124 25 0.04
125 5 0.01
126 20 0.03
127 31 0.05
128 28 0.05
129 50 0.09
130 44 0.08
131 8 0.01
132 4 0.01
133 35 0.06
134 236 0.40
135 88 0.15
136 2 0.00
ACGTcount: A:0.40, C:0.12, G:0.27, T:0.20
Consensus pattern (132 bp):
CGTCCTGCTCTTTGAGGACAAAAGGGGAAAAGAAGGGAATGGAATGTGTCCTACTCTTTGAGGAC
AAAGGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGGAAAAAAAGGAAATGAAG
TG
Found at i:19344 original size:61 final size:61
Alignment explanation
Indices: 19266--20224 Score: 1049
Period size: 61 Copynumber: 15.6 Consensus size: 61
19256 GGACAAAGGA
* * * * **
19266 GAAAAGGAAAAGGCATCCTACTCTTTAAGGACTAAAAAGTGCCATCAACTCATGTGGGCTTT
1 GAAAA-GAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
* * * * * *
19328 GAAAAGGAAAGGCATCCTGATCTTTGAGGACTAAAAAGTGTCACCAACTTATGTGGGCTTC
1 GAAAAGAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
* * * * * *
19389 GAGAAAAAAAAGGTATCCTGCTCTTTGATGAATAGAAAGGTGCCATCAACTTGTGTGGGCTTC
1 GA-AAAGAAAAGGCATCCTGCTCTTTGAGGACTA-AAAGGTGCCACCAACTTGTGTGGGCTTT
* ** * *
19452 GAAAGGAAAAGGCATCCTATTCTTTGAGGACTAAAGGGTGCCACCAACATGTGTGGGCTTT
1 GAAAAGAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
* *
19513 GAAAAGGAAAAGGCATCCTACTCTTTGAGGACT-AAAGGTGCCACCAGCTTGTGTGGGCTTT
1 GAAAA-GAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
** *
19574 -AAAAGAAAATGGTGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGC-TT
1 GAAAAGAAAA-GGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
* * ** *
19634 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTCAGGGGTGCCACTAACTTGTGTGGG-TTT
1 GAAAAG-AAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
* * ** * * ** *
19695 TAAAAGGAAAAAGCGCCCTACTCTTTGAGGACTAAAGGGCACCACCAACTTATGTGGGC-TT
1 GAAAA-GAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
* * * *
19756 GAAAAGAAAAAG-ATGTCCTGCTCTCTGAGGACTCAAGGGTGCCACCAACTTGTGTGGGCTTT
1 GAAAAGAAAAGGCA--TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
** * *
19818 -AAAAGGAAAAGGCGCCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTC
1 GAAAA-GAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
* **** *
19879 GAAAGGAAAATATGTCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTT
1 GAAAAGAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
* * *
19940 GAAAAGAGAAAAGACATCCTACTCTTTGAGGACTAAAAAGGTGCCACCAACTCGTGTGGGCTTT
1 G-AAA-AGAAAAGGCATCCTGCTCTTTGAGGACT-AAAAGGTGCCACCAACTTGTGTGGGCTTT
* *
20004 GAAAAGAAAAAGACGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTT
1 GAAAAG-AAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
* * *
20065 AAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAGAGGTGCCACCAACTTGTGTGGGCTTT
1 GAAAAG-AAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
* *
20127 -AAAAGAAAAAG-ATGTCCTGCTCTTTGAGGAC-AAAAGTGTGCCACCAACTCGTGTGGGCTTT
1 GAAAAGAAAAGGCA--TCCTGCTCTTTGAGGACTAAAAG-GTGCCACCAACTTGTGTGGGCTTT
** *
20188 GAAAAGAAAATGGCGCCCTGTTCTTTGAGGACTAAAA
1 GAAAAGAAAA-GGCATCCTGCTCTTTGAGGACTAAAA
20225 ATGGGCTAAA
Statistics
Matches: 769, Mismatches: 100, Indels: 55
0.83 0.11 0.06
Matches are distributed among these distances:
59 5 0.01
60 41 0.05
61 462 0.60
62 152 0.20
63 81 0.11
64 28 0.04
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.24
Consensus pattern (61 bp):
GAAAAGAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
Found at i:19665 original size:183 final size:182
Alignment explanation
Indices: 19266--20223 Score: 1158
Period size: 183 Copynumber: 5.2 Consensus size: 182
19256 GGACAAAGGA
* * * * * * **
19266 GAAAAGGAAAAGGCATCCTACTCTTTAAGGACTAAAAAGTGCCATCAACTCATGTGGGCTTTGAA
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTGAA
* * * * *
19331 AAGG-AAAGGCATCCTGA-TCTTTGAGGACTAAAAAGTGTCACCAACTTATGTGGGCTTCGAGAA
65 AAGGAAAAGGCGTCCT-ACTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTT-TA-AA
* * * * * *
19394 A-AAAAAGGTATCCTGCTCTTTGATGAATAGAAAGGTGCCATCAACTTGTGTGGGCTT
126 AGAAAAAGATGTCCTGCTCTTTGAGGACTA-AAAGGTGCCACCAACTCGTGTGGGCTT
* * ** *
19451 CG-AAAGGAAAAGGCATCCTATTCTTTGAGGACTAAAGGGTGCCACCAACATGTGTGGGCTTTGA
1 -GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAA-GGTGCCACCAACTTGTGTGGGCTTTGA
* *
19515 AAAGGAAAAGGCATCCTACTCTTTGAGGACTAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGA
64 AAAGGAAAAGGCGTCCTACTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGA
* *
19580 AAATGGTGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTT
129 AAAAGATGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTT
** * *
19634 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTCAGGGGTGCCACTAACTTGTGTGGG-TTTTAA
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTGAA
* * * *
19698 AAGGAAAAAGCGCCCTACTCTTTGAGGACTAAAGG-GCACCACCAACTTATGTGGGCTTGAAAAG
65 AAGGAAAAGGCGTCCTACTCTTTGAGGACTAAAGGTG--CCACCAACTTGTGTGGGCTTTAAAAG
* * * *
19762 AAAAAGATGTCCTGCTCTCTGAGGACTCAAGGGTGCCACCAACTTGTGTGGGCTT
128 AAAAAGATGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTT
* * * *
19817 TAAAAGGAAAAGGCGCCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTCG-A
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTGAA
*** *
19881 AAGGAAAATATGTCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTTGAAAAG
65 AAGGAAAAGGCGTCCTACTCTTTGAGGACTAAA-GGTGCCACCAACTTGTGTGGGCTTT-AAAAG
** *
19946 AGAAAAGACATCCTACTCTTTGAGGACTAAAAAGGTGCCACCAACTCGTGTGGGCTTT
128 A-AAAAGATGTCCTGCTCTTTGAGGACT-AAAAGGTGCCACCAACTCGTGTGGGC-TT
* *
20004 GAAAAGAAAAAGACGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA
* *
20069 AGAAAAAGGCGTCCTGCTCTTTGAGGACTAAGAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAA
66 AGGAAAAGGCGTCCTACTCTTTGAGGACTAA-AGGTGCCACCAACTTGTGTGGGCTTTAAAAGAA
20134 AAAGATGTCCTGCTCTTTGAGGAC-AAAAGTGTGCCACCAACTCGTGTGGGCTTT
130 AAAGATGTCCTGCTCTTTGAGGACTAAAAG-GTGCCACCAACTCGTGTGGGC-TT
* * *
20188 GAAAAGAAAATGGCGCCCTGTTCTTTGAGGACTAAA
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAA
20224 AATGGGCTAA
Statistics
Matches: 675, Mismatches: 79, Indels: 38
0.85 0.10 0.05
Matches are distributed among these distances:
181 1 0.00
182 38 0.06
183 250 0.37
184 95 0.14
185 125 0.19
186 80 0.12
187 85 0.13
188 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.24
Consensus pattern (182 bp):
GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA
AGGAAAAGGCGTCCTACTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAA
AAGATGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTT
Found at i:26568 original size:79 final size:79
Alignment explanation
Indices: 26430--26576 Score: 194
Period size: 79 Copynumber: 1.9 Consensus size: 79
26420 TGGGATAACG
* *
26430 ACGGGGCTGGAGTATCCTCGATTATGGAAAATCGGTGTTCTAGAAATAAAATCAGGGTTG-GAGT
1 ACGGGGCTGGAGCATCCTCGATTATAGAAAATCGGTGTTCTAGAAATAAAATCAGGGTTGAG-GT
26494 ATCCTCTCAGAAATA
65 ATCCTCTCAGAAATA
* *
26509 ACGGGGTTGGAGCATCC-CTGATTATAGAAAATCGGTGTT-TTGAAAATAAAATC-GAGGTTGAG
1 ACGGGGCTGGAGCATCCTC-GATTATAGAAAATCGGTGTTCTAG-AAATAAAATCAG-GGTTGAG
26571 GTATCC
63 GTATCC
26577 CTGATTATAG
Statistics
Matches: 60, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
78 4 0.07
79 55 0.92
80 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.27
Consensus pattern (79 bp):
ACGGGGCTGGAGCATCCTCGATTATAGAAAATCGGTGTTCTAGAAATAAAATCAGGGTTGAGGTA
TCCTCTCAGAAATA
Found at i:26577 original size:51 final size:51
Alignment explanation
Indices: 26513--26671 Score: 207
Period size: 51 Copynumber: 3.1 Consensus size: 51
26503 GAAATAACGG
*
26513 GGTTGGAGCATCCCTGATTATAGAAAATCGGTGTTTTGAAAATAAAATCGA
1 GGTTGGAGTATCCCTGATTATAGAAAATCGGTGTTTTGAAAATAAAATCGA
* * *
26564 GGTT-GAGGTATCCCTGATTATAGAAAATCAGTATTTTGAAAATAAAAT-AA
1 GGTTGGA-GTATCCCTGATTATAGAAAATCGGTGTTTTGAAAATAAAATCGA
* * * *
26614 GGGCTGGAGTATCCCTGATTATAGAAAATCGATGTTTTAAAAAT-AAATCGG
1 -GGTTGGAGTATCCCTGATTATAGAAAATCGGTGTTTTGAAAATAAAATCGA
26665 GGTTGGA
1 GGTTGGA
26672 TCATCCCCTC
Statistics
Matches: 92, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
50 13 0.14
51 77 0.84
52 2 0.02
ACGTcount: A:0.36, C:0.10, G:0.23, T:0.30
Consensus pattern (51 bp):
GGTTGGAGTATCCCTGATTATAGAAAATCGGTGTTTTGAAAATAAAATCGA
Found at i:26782 original size:79 final size:78
Alignment explanation
Indices: 26618--26837 Score: 223
Period size: 79 Copynumber: 2.8 Consensus size: 78
26608 AAATAAGGGC
* * * * *
26618 TGGAGTATCCCTGATTATAGAAAATCGATGTTTTAAAAATAAATCGGGGTTGGA-TCA-TCCCCT
1 TGGAGTATCCCCGATTGTGGAAAATCGATG-TTTAGAAATAAACCGGGGTTGGAGT-ATTCCCCT
26681 CAAAAATAACCGAGT
64 CAAAAATAACCGAGT
* *
26696 TGGAGTATCCCCGATTGTGGAAAATCGATGCTTTAGAAATAAGGCCGGGGTTGGAGTATTCCCGT
1 TGGAGTATCCCCGATTGTGGAAAATCGATG-TTTAGAAATAA-ACCGGGGTTGGAGTATTCCCCT
* * *
26761 -GAAAATAACGGGGT
64 CAAAAATAACCGAGT
* * ** *
26775 TGGAGTATCCCCGATTGCGAAAAATTAATGTTTTGAAAATAAAACCGGGGTTGGAGTA-TCCCC
1 TGGAGTATCCCCGATTGTGGAAAATCGATGTTTAG-AAAT-AAACCGGGGTTGGAGTATTCCCC
26838 ATGATGAAAA
Statistics
Matches: 119, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
78 45 0.38
79 66 0.55
80 8 0.07
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (78 bp):
TGGAGTATCCCCGATTGTGGAAAATCGATGTTTAGAAATAAACCGGGGTTGGAGTATTCCCCTCA
AAAATAACCGAGT
Found at i:30479 original size:21 final size:20
Alignment explanation
Indices: 30453--30500 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
30443 TAAATCTATA
30453 GATACATTTACT-ATTTGTATC
1 GATACATTT-CTGA-TTGTATC
*
30474 GATACATTTTTGATTGTATC
1 GATACATTTCTGATTGTATC
30494 GATACAT
1 GATACAT
30501 CTAGGTTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 15 0.60
21 10 0.40
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.46
Consensus pattern (20 bp):
GATACATTTCTGATTGTATC
Found at i:33135 original size:158 final size:158
Alignment explanation
Indices: 32893--33318 Score: 535
Period size: 158 Copynumber: 2.7 Consensus size: 158
32883 TCCAAAATAC
* * * *
32893 GTTTTCCACCATC-AGGGATACTCCAACCCTGTTATTTCCGACGA-GATACTCCAATCCC-AGTT
1 GTTTTTCACCATCGA-GGATACTCCAACCCTATTATTTTCGA-GAGGATACTCCAACCCCGA-TT
* *
32955 TTATTTCTAAAACACTGATTTTCCACCATCGAGGATACTCCAACCCCGTTATTTTCAAGGGGATA
63 TTATTTCTAAAACACTGATTTTCCACCATCGGGGATACTCCAACCCCGTTATTTTCAAGAGGATA
* *
33020 CTCCAA-CTCTGATTTTATTTCTAAAACATC-
128 CTCCAATCTC-AATTTTATTTCTAAAACACCA
*
33050 GATTTTTCACCATTG-GAGATACTCCAACCCTATTATTTTCGAGAGGATACTCCAACCCCGATTT
1 G-TTTTTCACCATCGAG-GATACTCCAACCCTATTATTTTCGAGAGGATACTCCAACCCCGATTT
* * * * *
33114 TATTTTTAAAATA-TCGATTTTCCACCATCGGGGACACTCCAACCCTGTTATTTTCGAGAGGATA
64 TATTTCTAAAACACT-GATTTTCCACCATCGGGGATACTCCAACCCCGTTATTTTCAAGAGGATA
*
33178 CTCTAATCTCAATTTTATTTCTAAAACACCA
128 CTCCAATCTCAATTTTATTTCTAAAACACCA
* * *
33209 GTTTTTCACCATCGAGGATACTCTAACCCTATTA-TTTCTGAGGGGATACTCAAACCCCGATTTT
1 GTTTTTCACCATCGAGGATACTCCAACCCTATTATTTTC-GAGAGGATACTCCAACCCCGATTTT
* **
33273 ATTTCTAAAACACTGATTTTCCACCATTGGGGATACTTTAACCCCG
65 ATTTCTAAAACACTGATTTTCCACCATCGGGGATACTCCAACCCCG
33319 ATTTAATTTC
Statistics
Matches: 232, Mismatches: 26, Indels: 21
0.83 0.09 0.08
Matches are distributed among these distances:
157 9 0.04
158 216 0.93
159 7 0.03
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.34
Consensus pattern (158 bp):
GTTTTTCACCATCGAGGATACTCCAACCCTATTATTTTCGAGAGGATACTCCAACCCCGATTTTA
TTTCTAAAACACTGATTTTCCACCATCGGGGATACTCCAACCCCGTTATTTTCAAGAGGATACTC
CAATCTCAATTTTATTTCTAAAACACCA
Found at i:33316 original size:51 final size:51
Alignment explanation
Indices: 33250--33368 Score: 175
Period size: 51 Copynumber: 2.3 Consensus size: 51
33240 TTATTTCTGA
* * * *
33250 GGGGATACTCAAACCCCGATTTTATTTCTAAAACACTGATTTTCCACCATT
1 GGGGATACTCTAACCCCGATTTAATTTCTAAAACACAGATTTTCCACCATC
* *
33301 GGGGATACTTTAACCCCGATTTAATTTCTAAAACACAGATTTTCTACCATC
1 GGGGATACTCTAACCCCGATTTAATTTCTAAAACACAGATTTTCCACCATC
*
33352 AGGGATACTCTAACCCC
1 GGGGATACTCTAACCCC
33369 ATTATTTCTG
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 60 1.00
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (51 bp):
GGGGATACTCTAACCCCGATTTAATTTCTAAAACACAGATTTTCCACCATC
Found at i:33316 original size:79 final size:79
Alignment explanation
Indices: 32894--33309 Score: 482
Period size: 79 Copynumber: 5.3 Consensus size: 79
32884 CCAAAATACG
* * * * *
32894 TTTTCCACCATCAGGGATACTCCAACCCTGTTATTTCCGACGAGATACTCCAATCCC-AGTTTTA
1 TTTTCCACCATCGGGGATACTCCAACCCTGTTATTTTCGAGGGGATACTCCAACCCCGA-TTTTA
32958 TTTCTAAAACACTGA
65 TTTCTAAAACACTGA
* * * * *
32973 TTTTCCACCATCGAGGATACTCCAACCCCGTTATTTTCAAGGGGATACTCCAACTCTGATTTTAT
1 TTTTCCACCATCGGGGATACTCCAACCCTGTTATTTTCGAGGGGATACTCCAACCCCGATTTTAT
33038 TTCTAAAACA-TCGA
66 TTCTAAAACACT-GA
* * * * *
33052 TTTTTCACCATTGGAGATACTCCAACCCTATTATTTTCGAGAGGATACTCCAACCCCGATTTTAT
1 TTTTCCACCATCGGGGATACTCCAACCCTGTTATTTTCGAGGGGATACTCCAACCCCGATTTTAT
* *
33117 TTTTAAAATA-TCGA
66 TTCTAAAACACT-GA
* * * * * *
33131 TTTTCCACCATCGGGGACACTCCAACCCTGTTATTTTCGAGAGGATACTCTAATCTCAATTTTAT
1 TTTTCCACCATCGGGGATACTCCAACCCTGTTATTTTCGAGGGGATACTCCAACCCCGATTTTAT
*
33196 TTCTAAAACAC-CA
66 TTCTAAAACACTGA
* * * * *
33209 GTTTTTCACCATCGAGGATACTCTAACCCTATTA-TTTCTGAGGGGATACTCAAACCCCGATTTT
1 -TTTTCCACCATCGGGGATACTCCAACCCTGTTATTTTC-GAGGGGATACTCCAACCCCGATTTT
33273 ATTTCTAAAACACTGA
64 ATTTCTAAAACACTGA
*
33289 TTTTCCACCATTGGGGATACT
1 TTTTCCACCATCGGGGATACT
33310 TTAACCCCGA
Statistics
Matches: 283, Mismatches: 48, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
78 6 0.02
79 275 0.97
80 2 0.01
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.34
Consensus pattern (79 bp):
TTTTCCACCATCGGGGATACTCCAACCCTGTTATTTTCGAGGGGATACTCCAACCCCGATTTTAT
TTCTAAAACACTGA
Found at i:33438 original size:130 final size:130
Alignment explanation
Indices: 33189--33438 Score: 319
Period size: 130 Copynumber: 1.9 Consensus size: 130
33179 TCTAATCTCA
* * * *
33189 ATTTTATTTCTAAAACACCAGTTTTTCACCATCGAGGATACTCTAACCCTATTATTTCTGAGGGG
1 ATTTAATTTCTAAAACACCAGATTTTCACCATCGAGGATACTCTAACCCCATTATTTCTGAGGCG
* * ** *
33254 ATACTCAAACCCCGATTTTATTTCTAAAACACTGATTTTCCACCATTGGGGATACTTTAACCCCG
66 ATACTCAAACCCCGATTTTATTTCCAAAACACTAATTTTCCACCATCAGAGATACTTTAACCCCG
*
33319 ATTTAATTTCTAAAACA-CAGATTTTCTACCATC-AGGGATACTCTAACCCCATTATTTCTGTGG
1 ATTTAATTTCTAAAACACCAGATTTTC-ACCATCGA-GGATACTCTAACCCCATTATTTCTGAGG
* * *
33382 CGATACTCCAACCCCGATTTTGTTTCCAAAATA-TCAACTTTT-CACCATCAGAGATAC
64 CGATACTCAAACCCCGATTTTATTTCCAAAACACT-AA-TTTTCCACCATCAGAGATAC
33439 GCCAACCCAA
Statistics
Matches: 103, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
129 10 0.10
130 89 0.86
131 4 0.04
ACGTcount: A:0.30, C:0.25, G:0.11, T:0.34
Consensus pattern (130 bp):
ATTTAATTTCTAAAACACCAGATTTTCACCATCGAGGATACTCTAACCCCATTATTTCTGAGGCG
ATACTCAAACCCCGATTTTATTTCCAAAACACTAATTTTCCACCATCAGAGATACTTTAACCCCG
Found at i:39282 original size:56 final size:56
Alignment explanation
Indices: 39196--39328 Score: 257
Period size: 56 Copynumber: 2.4 Consensus size: 56
39186 TGGAGGTTTT
39196 CTTAGAAAAACACTATTCTTGCTTTATAAATACAAAATTTACTTAGCTATCATTTA
1 CTTAGAAAAACACTATTCTTGCTTTATAAATACAAAATTTACTTAGCTATCATTTA
*
39252 CTTAGAAAAGCACTATTCTTGCTTTATAAATACAAAATTTACTTAGCTATCATTTA
1 CTTAGAAAAACACTATTCTTGCTTTATAAATACAAAATTTACTTAGCTATCATTTA
39308 CTTAGAAAAACACTATTCTTG
1 CTTAGAAAAACACTATTCTTG
39329 TAGCTTCCAA
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 75 1.00
ACGTcount: A:0.38, C:0.17, G:0.07, T:0.38
Consensus pattern (56 bp):
CTTAGAAAAACACTATTCTTGCTTTATAAATACAAAATTTACTTAGCTATCATTTA
Found at i:40879 original size:22 final size:22
Alignment explanation
Indices: 40849--40891 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
40839 TCTAGGCACC
*
40849 ATATTATTATTAATATTTTCTT
1 ATATCATTATTAATATTTTCTT
40871 ATATCATTATTAATATTTTCT
1 ATATCATTATTAATATTTTCT
40892 CATTGCTCGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (22 bp):
ATATCATTATTAATATTTTCTT
Found at i:43576 original size:18 final size:17
Alignment explanation
Indices: 43553--43586 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
43543 ATTAAATAAA
43553 AAAATTCAAAAATAAAAG
1 AAAATT-AAAAATAAAAG
*
43571 AAAATTAAAATTAAAA
1 AAAATTAAAAATAAAA
43587 TTAATAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (17 bp):
AAAATTAAAAATAAAAG
Found at i:44763 original size:66 final size:66
Alignment explanation
Indices: 44657--44788 Score: 158
Period size: 66 Copynumber: 2.0 Consensus size: 66
44647 AGGTTGACCG
* * * * * *
44657 GGGCAAAACCTAAGTTGAAGAAAGGCTAGCTGGGATGAAACCGTACGAACTAATAAAGGGTGACT
1 GGGCAAAACCTAAGTTCAAAAAAGGCTAGCTAGGATGAAACCATACGAACCAATAAAGAGTGACT
44722 A
66 A
* * * *
44723 GGGCAAAACCTAAG-TCAAAAAAGAGTTGGCTAGGATGAAACCATGCGAACCAATAAATAGTGAC
1 GGGCAAAACCTAAGTTCAAAAAAG-GCTAGCTAGGATGAAACCATACGAACCAATAAAGAGTGAC
44787 TA
65 TA
44789 CGATGGAACT
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
65 7 0.13
66 48 0.87
ACGTcount: A:0.42, C:0.16, G:0.26, T:0.17
Consensus pattern (66 bp):
GGGCAAAACCTAAGTTCAAAAAAGGCTAGCTAGGATGAAACCATACGAACCAATAAAGAGTGACT
A
Found at i:45105 original size:66 final size:67
Alignment explanation
Indices: 45034--45203 Score: 218
Period size: 66 Copynumber: 2.6 Consensus size: 67
45024 CAACAAAAGG
* * *
45034 TGACTAGGGTGAAACCATACAAACCAACAAAGGGTGACCAAGGTAGAATCTAAGTCAAAAAGGAG
1 TGACTAGGATGAAACCATACAAACCAACAAAGGGTGACCAAGGCAGAACCTAAGTCAAAAAGGAG
45099 -T
66 TT
* ** * * *
45100 TGACTAAGATGAAACCATACAAACCAACAAAGGGTGATGATGGCAGAACCTAAGTCGAAGAGGAG
1 TGACTAGGATGAAACCATACAAACCAACAAAGGGTGACCAAGGCAGAACCTAAGTCAAAAAGGAG
45165 TT
66 TT
* * *
45167 TG-TTAGGATGAAACCATACGAGCCAACAAAGGGTGAC
1 TGACTAGGATGAAACCATACAAACCAACAAAGGGTGAC
45204 TAGAGCAACT
Statistics
Matches: 89, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
66 86 0.97
67 3 0.03
ACGTcount: A:0.42, C:0.17, G:0.25, T:0.16
Consensus pattern (67 bp):
TGACTAGGATGAAACCATACAAACCAACAAAGGGTGACCAAGGCAGAACCTAAGTCAAAAAGGAG
TT
Found at i:45218 original size:66 final size:66
Alignment explanation
Indices: 45034--45233 Score: 205
Period size: 66 Copynumber: 3.0 Consensus size: 66
45024 CAACAAAAGG
* * *
45034 TGACTAGGGTGAAACCATACAAACCAACAAAGGGTGACCAAGGTAG-AAT-CTAAGTCAAAAAGG
1 TGACTAGGATGAAACCATACAAACCAACAAAGGGTGA-CTA-G-AGCAATCCTAAGTCGAAAAGG
45097 AG-T
63 AGTT
* * *
45100 TGACTAAGATGAAACCATACAAACCAACAAAGGGTGA-T-GATGGCAGAACCTAAGTCGAAGAGG
1 TGACTAGGATGAAACCATACAAACCAACAAAGGGTGACTAGA--GCA-ATCCTAAGTCGAAAAGG
45163 AGTT
63 AGTT
* * * *
45167 TG-TTAGGATGAAACCATACGAGCCAACAAAGGGTGACTAGAGCAACTCCTAAGTTGAAAAGGAG
1 TGACTAGGATGAAACCATACAAACCAACAAAGGGTGACTAGAGCAA-TCCTAAGTCGAAAAGGAG
45231 TT
65 TT
45233 T
1 T
45234 ATGAAAAGGT
Statistics
Matches: 112, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
61 1 0.01
62 1 0.01
63 1 0.01
64 1 0.01
65 2 0.02
66 100 0.89
67 4 0.04
68 2 0.02
ACGTcount: A:0.41, C:0.17, G:0.25, T:0.17
Consensus pattern (66 bp):
TGACTAGGATGAAACCATACAAACCAACAAAGGGTGACTAGAGCAATCCTAAGTCGAAAAGGAGT
T
Found at i:49018 original size:79 final size:80
Alignment explanation
Indices: 48875--49028 Score: 186
Period size: 79 Copynumber: 1.9 Consensus size: 80
48865 TTAACCCTAC
** ** ****
48875 TTTTACTTCCAAAACACCAAATTTTTTTTCTCTTGGGATACTCCAACCCTGTTTCTCCAAAGGG-
1 TTTTACTTCCAAAACACCAAATTTTTCATCTCCAGGGATACTCCAACCCACAATCTCCAAAGGGA
48939 ATACTCTAACACCGT
66 ATACTCTAACACCGT
* **
48954 TTTTACTTCCAAAACACCAAATTTTTCATCTCCAGGGATACTCTAATCCCACAATCT-CTGAGGG
1 TTTTACTTCCAAAACACCAAATTTTTCATCTCCAGGGATACTCCAA-CCCACAATCTCCAAAGGG
49018 AATACTCTAAC
65 AATACTCTAAC
49029 CTCATTTTTA
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
79 46 0.74
80 16 0.26
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.33
Consensus pattern (80 bp):
TTTTACTTCCAAAACACCAAATTTTTCATCTCCAGGGATACTCCAACCCACAATCTCCAAAGGGA
ATACTCTAACACCGT
Found at i:51150 original size:20 final size:20
Alignment explanation
Indices: 51111--51152 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
51101 CATGTTAGGT
* *
51111 AAGAAAGAAAGAAGATGAAA
1 AAGAAAGAAAGAAAAAGAAA
*
51131 AAGAAAGGAAGAAAAAGAAA
1 AAGAAAGAAAGAAAAAGAAA
51151 AA
1 AA
51153 AACATATGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.74, C:0.00, G:0.24, T:0.02
Consensus pattern (20 bp):
AAGAAAGAAAGAAAAAGAAA
Found at i:53380 original size:33 final size:33
Alignment explanation
Indices: 53343--53411 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
53333 CCGTTACAAG
* **
53343 CAATGTATAGATACATTTTTTCATGTATCGATA
1 CAATGTATAGATACATTGTACCATGTATCGATA
*
53376 CAATGTATCGATACATTGTACCATGTATCGATA
1 CAATGTATAGATACATTGTACCATGTATCGATA
53409 CAA
1 CAA
53412 ATAGTGATAG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.36
Consensus pattern (33 bp):
CAATGTATAGATACATTGTACCATGTATCGATA
Found at i:53383 original size:13 final size:13
Alignment explanation
Indices: 53365--53395 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
53355 ACATTTTTTC
53365 ATGTATCGATACA
1 ATGTATCGATACA
53378 ATGTATCGATACA
1 ATGTATCGATACA
*
53391 TTGTA
1 ATGTA
53396 CCATGTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:53485 original size:19 final size:19
Alignment explanation
Indices: 53440--53553 Score: 120
Period size: 19 Copynumber: 5.7 Consensus size: 19
53430 CTGTCAGTTT
**
53440 CATGTATCGATACAATTTGCC
1 CATGTATCGATACAA--TGAA
*
53461 CATGTATCGGTACAATGAA
1 CATGTATCGATACAATGAA
**
53480 CATGTATCGATACAATTTGCC
1 CATGTATCGATACAA--TGAA
*
53501 CATGTATCGGTACAATGAA
1 CATGTATCGATACAATGAA
*
53520 CATGTATCGATACAAAGCAA
1 CATGTATCGATACAATG-AA
53540 CATGTATCGATACA
1 CATGTATCGATACA
53554 TCTGGGTGTG
Statistics
Matches: 79, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
19 33 0.42
20 16 0.20
21 30 0.38
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:53494 original size:40 final size:40
Alignment explanation
Indices: 53440--53534 Score: 190
Period size: 40 Copynumber: 2.4 Consensus size: 40
53430 CTGTCAGTTT
53440 CATGTATCGATACAATTTGCCCATGTATCGGTACAATGAA
1 CATGTATCGATACAATTTGCCCATGTATCGGTACAATGAA
53480 CATGTATCGATACAATTTGCCCATGTATCGGTACAATGAA
1 CATGTATCGATACAATTTGCCCATGTATCGGTACAATGAA
53520 CATGTATCGATACAA
1 CATGTATCGATACAA
53535 AGCAACATGT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (40 bp):
CATGTATCGATACAATTTGCCCATGTATCGGTACAATGAA
Found at i:54191 original size:97 final size:97
Alignment explanation
Indices: 53956--54193 Score: 361
Period size: 97 Copynumber: 2.5 Consensus size: 97
53946 TATCACAGAT
* * * * *
53956 ACTCCAACCCTATTCCTTCGAGGGGATACTCCAACCCCGCTTTTAAACACATCAAAGTTTATATC
1 ACTCCAACCCCATTCCTCCGAGGGGATACTCTAACCCCGTTTTTAAACACATCAAAGTTTAAATC
54021 TTATTCTCACTTAAATTGTCATCATCGAGGAC
66 TTATTCTCACTTAAATTGTCATCATCGAGGAC
* *
54053 ACTTCAACCCCATTCCTCCGAGGGGATACT-TCAACCCCGTTTTTAAACGCATCAAAGTTTAAAT
1 ACTCCAACCCCATTCCTCCGAGGGGATACTCT-AACCCCGTTTTTAAACACATCAAAGTTTAAAT
* *
54117 TTTATTCTCACTTAAATTGTCATCATCGGGGAC
65 CTTATTCTCACTTAAATTGTCATCATCGAGGAC
* *
54150 ACTCCAACCCCATTCCTCCGAGGAGATACTCTAACCTCGTTTTT
1 ACTCCAACCCCATTCCTCCGAGGGGATACTCTAACCCCGTTTTT
54194 CAATCAAAAA
Statistics
Matches: 127, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
97 126 0.99
98 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.31
Consensus pattern (97 bp):
ACTCCAACCCCATTCCTCCGAGGGGATACTCTAACCCCGTTTTTAAACACATCAAAGTTTAAATC
TTATTCTCACTTAAATTGTCATCATCGAGGAC
Found at i:56085 original size:35 final size:35
Alignment explanation
Indices: 56037--56241 Score: 284
Period size: 35 Copynumber: 5.7 Consensus size: 35
56027 GCATTTTTTC
56037 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTT
1 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTT
* * * *
56072 TTTAAAGCTCACAACTCCGTGGCACTCTTTTTCCCTT
1 TTCAAAGCCCACAACTCTGTGGCACACTTTTT--CTT
56109 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTT
1 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTT
* * *
56144 TTCAAAGCCCACAATTCTATGGCACTCTTTTTTCCCTT
1 TTCAAAGCCCACAACTCTGTGGCACAC-TTTTT--CTT
56182 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTT
1 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTT
* *
56217 TTTAAAGCCCACAACTCCGTGGCAC
1 TTCAAAGCCCACAACTCTGTGGCAC
56242 TCCCACAACT
Statistics
Matches: 149, Mismatches: 16, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
35 81 0.54
36 5 0.03
37 36 0.24
38 27 0.18
ACGTcount: A:0.22, C:0.32, G:0.11, T:0.34
Consensus pattern (35 bp):
TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTT
Found at i:56139 original size:72 final size:73
Alignment explanation
Indices: 56037--56243 Score: 362
Period size: 73 Copynumber: 2.8 Consensus size: 73
56027 GCATTTTTTC
*
56037 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTTTTTAAAGCTCACAACTCCGTGGCACTC-TT
1 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
56101 TTTCCCTT
66 TTTCCCTT
* * **
56109 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTTTTCAAAGCCCACAATTCTATGGCACTCTTT
1 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
56174 TTTCCCTT
66 TTTCCCTT
56182 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTC
1 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTC
56244 CCACAACTCC
Statistics
Matches: 125, Mismatches: 9, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
72 57 0.46
73 68 0.54
ACGTcount: A:0.22, C:0.32, G:0.11, T:0.34
Consensus pattern (73 bp):
TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
TTTCCCTT
Found at i:56248 original size:19 final size:19
Alignment explanation
Indices: 56224--56260 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
56214 CTTTTTAAAG
56224 CCCACAACTCCGTGGCACT
1 CCCACAACTCCGTGGCACT
56243 CCCACAACTCCGTGGCAC
1 CCCACAACTCCGTGGCAC
56261 CTTCTTTTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.22, C:0.49, G:0.16, T:0.14
Consensus pattern (19 bp):
CCCACAACTCCGTGGCACT
Found at i:56279 original size:54 final size:54
Alignment explanation
Indices: 56189--56357 Score: 157
Period size: 54 Copynumber: 3.0 Consensus size: 54
56179 CTTTTCAAAG
* * *
56189 CCCACAACTCTGTGGCACACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACT
1 CCCACAACTCCGTGGCACACTTTTTCCTTCTAAAGCCCACAACTCCGTGGCACT
56243 CCCACAACTCCGTGGCAC-CTTCTTTTCCTTCT-AAGCCCACAACTCCGTGGCACCCTTTT
1 CCCACAACTCCGTGGCACAC-T-TTTTCCTTCTAAAGCCCACAACTCCGTGGCA--C---T
* * * *
56302 AAGTCCACGACTCCGTGGCACTC-TTTTCCTT-TAAAGCCCACAACTACGTGGCACT
1 ---CCCACAACTCCGTGGCACACTTTTTCCTTCTAAAGCCCACAACTCCGTGGCACT
56357 C
1 C
56358 TTTTCCTTCT
Statistics
Matches: 96, Mismatches: 7, Indels: 26
0.74 0.05 0.20
Matches are distributed among these distances:
53 1 0.01
54 38 0.40
55 9 0.09
56 1 0.01
58 1 0.01
59 2 0.02
60 27 0.28
62 16 0.17
63 1 0.01
ACGTcount: A:0.21, C:0.38, G:0.14, T:0.28
Consensus pattern (54 bp):
CCCACAACTCCGTGGCACACTTTTTCCTTCTAAAGCCCACAACTCCGTGGCACT
Found at i:56309 original size:27 final size:27
Alignment explanation
Indices: 56269--56328 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
56259 ACCTTCTTTT
*
56269 CCTTCTAAGCCCACAACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCAC
* *
56296 CCTTTTAAGTCCACGACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCAC
*
56323 TCTTTT
1 CCTTTT
56329 CCTTTAAAGC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.18, C:0.38, G:0.15, T:0.28
Consensus pattern (27 bp):
CCTTTTAAGCCCACAACTCCGTGGCAC
Found at i:56333 original size:33 final size:33
Alignment explanation
Indices: 56243--56497 Score: 265
Period size: 33 Copynumber: 7.7 Consensus size: 33
56233 CCGTGGCACT
*
56243 CCCACAACTCCGTGGCACCTTCTTTTCCTTCTAAG
1 CCCACAACTCCGTGGCA-C-TCTTTTCCTTTTAAG
56278 CCCACAACTCCGTGGCA--C----CCTTTTAAG
1 CCCACAACTCCGTGGCACTCTTTTCCTTTTAAG
* * *
56305 TCCACGACTCCGTGGCACTCTTTTCCTTTAAAG
1 CCCACAACTCCGTGGCACTCTTTTCCTTTTAAG
* *
56338 CCCACAACTACGTGGCACTCTTTTCCTTCTAAG
1 CCCACAACTCCGTGGCACTCTTTTCCTTTTAAG
*
56371 CCCACAACTCCGTGGCACTCTTTTTCCTTCTAAG
1 CCCACAACTCCGTGGCACTC-TTTTCCTTTTAAG
56405 CCCACAACTCCGTGGCACTCTTTTTTTCCTTTTTAAAG
1 CCCACAACTCCGTGGCACTC---TTTTCC-TTTT-AAG
**
56443 CCCACAACTCTATGGCAC-CTTGTTCCTTTTAAG
1 CCCACAACTCCGTGGCACTCTT-TTCCTTTTAAG
* * *
56476 TCCACAACTTCGTGACA-TCTTT
1 CCCACAACTCCGTGGCACTCTTT
56498 CACCCTCTCT
Statistics
Matches: 189, Mismatches: 18, Indels: 29
0.80 0.08 0.12
Matches are distributed among these distances:
27 23 0.12
29 1 0.01
31 1 0.01
32 1 0.01
33 73 0.39
34 39 0.21
35 21 0.11
36 7 0.04
37 4 0.02
38 19 0.10
ACGTcount: A:0.20, C:0.36, G:0.12, T:0.33
Consensus pattern (33 bp):
CCCACAACTCCGTGGCACTCTTTTCCTTTTAAG
Found at i:56541 original size:34 final size:31
Alignment explanation
Indices: 56499--56638 Score: 180
Period size: 34 Copynumber: 4.5 Consensus size: 31
56489 GACATCTTTC
56499 ACCCTCTCTAAAGCCCACACAAGTCGGTGGCAA
1 ACCCTCTC-AAAGCCCACACAAGTCGGTGGC-A
*
56532 ACCCTTCTCTAAAGCCCACACAAGTTGGTGGCA
1 ACCC-TCTC-AAAGCCCACACAAGTCGGTGGCA
* *
56565 ACCCCCTCAAAGCCCACACAAGTTGGTGGCA
1 ACCCTCTCAAAGCCCACACAAGTCGGTGGCA
56596 A-CC-C-CAAAGCCCACACAAGTCGGTGGCA
1 ACCCTCTCAAAGCCCACACAAGTCGGTGGCA
*
56624 ACCC-CTCTAAGCCCA
1 ACCCTCTCAAAGCCCA
56639 ATATAGCTGG
Statistics
Matches: 100, Mismatches: 4, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
28 24 0.24
29 4 0.04
30 10 0.10
31 24 0.24
32 3 0.03
33 9 0.09
34 26 0.26
ACGTcount: A:0.29, C:0.39, G:0.18, T:0.14
Consensus pattern (31 bp):
ACCCTCTCAAAGCCCACACAAGTCGGTGGCA
Found at i:56749 original size:49 final size:49
Alignment explanation
Indices: 56631--56999 Score: 438
Period size: 49 Copynumber: 7.7 Consensus size: 49
56621 GCAACCCCTC
* *
56631 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTCATCTT
* * *
56683 GAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
56732 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
56781 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
56824 TAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
56873 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
56916 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC--CTT-CATCTT
* *
56968 TAAGTTCAATGTAGCTGGCCTTGAATCAGCAC
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCAC
57000 GTTGACATCC
Statistics
Matches: 275, Mismatches: 27, Indels: 30
0.83 0.08 0.09
Matches are distributed among these distances:
43 78 0.28
45 2 0.01
47 1 0.00
49 126 0.46
50 1 0.00
51 1 0.00
52 66 0.24
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
Found at i:56850 original size:92 final size:92
Alignment explanation
Indices: 56729--56999 Score: 470
Period size: 92 Copynumber: 2.9 Consensus size: 92
56719 GCACCTTCAT
*
56729 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
56794 GCTGGCCTTGACTCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
*
56821 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
56886 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* *
56913 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG--CATCTT-CATCTTTAAGTCCAAT
56978 GTAGCTGGCCTTGAATCAGCAC
63 GTAGCTGGCCTTGAATCAGCAC
57000 GTTGACATCC
Statistics
Matches: 171, Mismatches: 5, Indels: 3
0.96 0.03 0.02
Matches are distributed among these distances:
92 129 0.75
94 5 0.03
95 37 0.22
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.32
Consensus pattern (92 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:57042 original size:55 final size:55
Alignment explanation
Indices: 56913--57295 Score: 280
Period size: 55 Copynumber: 6.7 Consensus size: 55
56903 ACATTGGCAC
* *
56913 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA--CATTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * **
56965 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * * * *
57020 CTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATT-G-A-C---ATC-CTTTT-TC-TCAT
* *
57084 CATTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAT-C----T-TCAT
1 C--TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * **
57135 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * * * * *
57190 CTTTAGGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATT-G-A-C---ATC-C-TTT-T--TC-TC
57255 AT
54 AT
*
57257 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTG
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTG
57296 GCACCTTCAT
Statistics
Matches: 257, Mismatches: 42, Indels: 50
0.74 0.12 0.14
Matches are distributed among these distances:
49 36 0.14
50 1 0.00
51 5 0.02
52 37 0.14
53 1 0.00
54 7 0.03
55 64 0.25
56 2 0.01
57 2 0.01
58 3 0.01
60 2 0.01
61 6 0.02
62 6 0.02
63 6 0.02
64 6 0.02
65 1 0.00
66 36 0.14
67 36 0.14
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.37
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
Found at i:57202 original size:170 final size:171
Alignment explanation
Indices: 56913--57306 Score: 709
Period size: 170 Copynumber: 2.3 Consensus size: 171
56903 ACATTGGCAC
*
56913 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG--CATCTT-CATCTTTAAGTTCAAT
56978 GTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCC
63 GTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCC
57043 ATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCATCAT
128 ATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCATCAT
*
57087 -TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
*
57151 GCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAGGCCCAATATCGTTGGCCATG
66 GCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCATG
57216 AATCAACATATTGGCATCTTTATCACTTTTCTCATCATCAT
131 AATCAACATATTGGCATCTTTATCACTTTTCTCATCATCAT
* *
57257 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATC
57307 ATCTCTAAAA
Statistics
Matches: 214, Mismatches: 5, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
170 124 0.58
171 52 0.24
173 38 0.18
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (171 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
GCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCATG
AATCAACATATTGGCATCTTTATCACTTTTCTCATCATCAT
Found at i:58143 original size:13 final size:13
Alignment explanation
Indices: 58125--58149 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
58115 CATAAAATGT
58125 TGTATCGATACAA
1 TGTATCGATACAA
58138 TGTATCGATACA
1 TGTATCGATACA
58150 TTTTTTTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:58233 original size:13 final size:13
Alignment explanation
Indices: 58215--58239 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
58205 ATTACTCACA
58215 TGTATCGATACAT
1 TGTATCGATACAT
58228 TGTATCGATACA
1 TGTATCGATACA
58240 CTGATTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:58291 original size:52 final size:51
Alignment explanation
Indices: 58228--58368 Score: 219
Period size: 52 Copynumber: 2.7 Consensus size: 51
58218 ATCGATACAT
**
58228 TGTATCGATACACTGATTTTTGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACACT-ATTAATGTATCGATACATGCAGGCAAATTTGCCCAGA
* *
58280 TGTATCGATACATTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACACTAT-TAATGTATCGATACATGCAGGCAAATTTGCCCAGA
58332 TGTATCGATACACTATTAAATGTATCGATACATGCAG
1 TGTATCGATACACTATT-AATGTATCGATACATGCAG
58369 TAACTTTTCA
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
51 2 0.02
52 79 0.98
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (51 bp):
TGTATCGATACACTATTAATGTATCGATACATGCAGGCAAATTTGCCCAGA
Found at i:66567 original size:32 final size:31
Alignment explanation
Indices: 66535--66768 Score: 177
Period size: 35 Copynumber: 7.1 Consensus size: 31
66525 CTTTTTAAGT
* *
66535 CCACGACTCAGTGGCATCTTTTCCTTTAAAGT
1 CCACGACTCAGTGGCAT-TTTTCCTTCAAAGC
*
66567 CCACGACTCAGTGGCATTTTGT-C-TCAAAGT
1 CCACGACTCAGTGGCATTTT-TCCTTCAAAGC
*
66597 CCACGACTCAGT-GCATTTTTTCTTCAAAGC
1 CCACGACTCAGTGGCATTTTTCCTTCAAAGC
*
66627 CCACGACTCAGTGGCATTTTTTCTTCAAAGC
1 CCACGACTCAGTGGCATTTTTCCTTCAAAGC
* * * *
66658 CCACAACTCTGTGGCACACTTTTTCTTTTTAAAGC
1 CCACGACTCAGTGG--CA-TTTTTC-CTTCAAAGC
* *
66693 CCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGC
1 CCACGACTCAGTGGCA---TTTTT-CC--TTCAAAGC
* * *
66730 CCACAACTCTGTGGCACACTTTTTCTTTTCAAAGC
1 CCACGACTCAGTGG--CA-TTTTTC-CTTCAAAGC
66765 CCAC
1 CCAC
66769 AATTCTATGG
Statistics
Matches: 174, Mismatches: 12, Indels: 29
0.81 0.06 0.13
Matches are distributed among these distances:
28 1 0.01
29 8 0.05
30 36 0.21
31 34 0.20
32 18 0.10
33 4 0.02
34 5 0.03
35 38 0.22
36 2 0.01
37 26 0.15
39 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.14, T:0.33
Consensus pattern (31 bp):
CCACGACTCAGTGGCATTTTTCCTTCAAAGC
Found at i:66598 original size:30 final size:31
Alignment explanation
Indices: 66531--66673 Score: 200
Period size: 30 Copynumber: 4.6 Consensus size: 31
66521 TTTTCTTTTT
* *
66531 AAGTCCACGACTCAGTGGCATCTTTTCCTTTA
1 AAGTCCACGACTCAGTGGCAT-TTTTTCTTCA
*
66563 AAGTCCACGACTCAGTGGCATTTTGTC-TCA
1 AAGTCCACGACTCAGTGGCATTTTTTCTTCA
66593 AAGTCCACGACTCAGT-GCATTTTTTCTTCA
1 AAGTCCACGACTCAGTGGCATTTTTTCTTCA
*
66623 AAGCCCACGACTCAGTGGCATTTTTTCTTCA
1 AAGTCCACGACTCAGTGGCATTTTTTCTTCA
* * *
66654 AAGCCCACAACTCTGTGGCA
1 AAGTCCACGACTCAGTGGCA
66674 CACTTTTTCT
Statistics
Matches: 102, Mismatches: 7, Indels: 5
0.89 0.06 0.04
Matches are distributed among these distances:
29 9 0.09
30 36 0.35
31 36 0.35
32 21 0.21
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.31
Consensus pattern (31 bp):
AAGTCCACGACTCAGTGGCATTTTTTCTTCA
Found at i:66695 original size:35 final size:35
Alignment explanation
Indices: 66619--66854 Score: 300
Period size: 35 Copynumber: 6.7 Consensus size: 35
66609 GCATTTTTTC
* * *
66619 TTCAAAGCCCACGACTCAGTGG--CA-TTTTT-TC
1 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTT
66650 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTT
1 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTT
* * *
66685 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTT
1 TTCAAAGCCCACAACTCTGTGGCACACTTTTT--CTT
66722 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTT
1 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTT
* * *
66757 TTCAAAGCCCACAATTCTATGGCACTCTTTTTTCCCTT
1 TTCAAAGCCCACAACTCTGTGGCACAC-TTTTT--CTT
66795 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTT
1 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTT
* *
66830 TTTAAAGCCCACAACTCCGTGGCAC
1 TTCAAAGCCCACAACTCTGTGGCAC
66855 TCCCACAACT
Statistics
Matches: 179, Mismatches: 17, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
31 20 0.11
33 2 0.01
34 5 0.03
35 83 0.46
36 5 0.03
37 37 0.21
38 27 0.15
ACGTcount: A:0.22, C:0.32, G:0.12, T:0.33
Consensus pattern (35 bp):
TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTT
Found at i:66736 original size:72 final size:73
Alignment explanation
Indices: 66650--66856 Score: 371
Period size: 73 Copynumber: 2.8 Consensus size: 73
66640 GCATTTTTTC
66650 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTC-TT
1 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
66714 TTTCCCTT
66 TTTCCCTT
* * **
66722 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTTTTCAAAGCCCACAATTCTATGGCACTCTTT
1 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
66787 TTTCCCTT
66 TTTCCCTT
66795 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTC
1 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTC
66857 CCACAACTCC
Statistics
Matches: 126, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
72 58 0.46
73 68 0.54
ACGTcount: A:0.22, C:0.33, G:0.11, T:0.34
Consensus pattern (73 bp):
TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
TTTCCCTT
Found at i:66861 original size:19 final size:19
Alignment explanation
Indices: 66837--66873 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
66827 CTTTTTAAAG
66837 CCCACAACTCCGTGGCACT
1 CCCACAACTCCGTGGCACT
66856 CCCACAACTCCGTGGCAC
1 CCCACAACTCCGTGGCAC
66874 CTTCTTTTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.22, C:0.49, G:0.16, T:0.14
Consensus pattern (19 bp):
CCCACAACTCCGTGGCACT
Found at i:66892 original size:54 final size:54
Alignment explanation
Indices: 66802--66970 Score: 157
Period size: 54 Copynumber: 3.0 Consensus size: 54
66792 CTTTTCAAAG
* * *
66802 CCCACAACTCTGTGGCACACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACT
1 CCCACAACTCCGTGGCACACTTTTTCCTTCTAAAGCCCACAACTCCGTGGCACT
66856 CCCACAACTCCGTGGCAC-CTTCTTTTCCTTCT-AAGCCCACAACTCCGTGGCACCCTTTT
1 CCCACAACTCCGTGGCACAC-T-TTTTCCTTCTAAAGCCCACAACTCCGTGGCA--C---T
* * * *
66915 AAGTCCACGACTCCGTGGCACTC-TTTTCCTT-TAAAGCCCACAACTACGTGGCACT
1 ---CCCACAACTCCGTGGCACACTTTTTCCTTCTAAAGCCCACAACTCCGTGGCACT
66970 C
1 C
66971 TTTTCCTTCT
Statistics
Matches: 96, Mismatches: 7, Indels: 26
0.74 0.05 0.20
Matches are distributed among these distances:
53 1 0.01
54 38 0.40
55 9 0.09
56 1 0.01
58 1 0.01
59 2 0.02
60 27 0.28
62 16 0.17
63 1 0.01
ACGTcount: A:0.21, C:0.38, G:0.14, T:0.28
Consensus pattern (54 bp):
CCCACAACTCCGTGGCACACTTTTTCCTTCTAAAGCCCACAACTCCGTGGCACT
Found at i:66922 original size:27 final size:27
Alignment explanation
Indices: 66882--66941 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
66872 ACCTTCTTTT
*
66882 CCTTCTAAGCCCACAACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCAC
* *
66909 CCTTTTAAGTCCACGACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCAC
*
66936 TCTTTT
1 CCTTTT
66942 CCTTTAAAGC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.18, C:0.38, G:0.15, T:0.28
Consensus pattern (27 bp):
CCTTTTAAGCCCACAACTCCGTGGCAC
Found at i:66946 original size:33 final size:33
Alignment explanation
Indices: 66856--67110 Score: 274
Period size: 33 Copynumber: 7.7 Consensus size: 33
66846 CCGTGGCACT
*
66856 CCCACAACTCCGTGGCACCTTCTTTTCCTTCTAAG
1 CCCACAACTCCGTGGCA-C-TCTTTTCCTTTTAAG
66891 CCCACAACTCCGTGGCA--C----CCTTTTAAG
1 CCCACAACTCCGTGGCACTCTTTTCCTTTTAAG
* * *
66918 TCCACGACTCCGTGGCACTCTTTTCCTTTAAAG
1 CCCACAACTCCGTGGCACTCTTTTCCTTTTAAG
* *
66951 CCCACAACTACGTGGCACTCTTTTCCTTCTAAG
1 CCCACAACTCCGTGGCACTCTTTTCCTTTTAAG
*
66984 CCCACAACTCCGTGGCACTCTTTTTCCTTCTAAG
1 CCCACAACTCCGTGGCACTC-TTTTCCTTTTAAG
67018 CCCACAACTCCGTGGCACTCTTTTTTTCCTTTTTAAAG
1 CCCACAACTCCGTGGCACTC---TTTTCC-TTTT-AAG
*
67056 CCCACAACTCTGTGGCAC-CTTGTTCCTTTTAAG
1 CCCACAACTCCGTGGCACTCTT-TTCCTTTTAAG
* * *
67089 TCCACAACTTCGTGACA-TCTTT
1 CCCACAACTCCGTGGCACTCTTT
67111 CACCCTCTCT
Statistics
Matches: 191, Mismatches: 16, Indels: 29
0.81 0.07 0.12
Matches are distributed among these distances:
27 23 0.12
29 1 0.01
31 1 0.01
32 1 0.01
33 74 0.39
34 39 0.20
35 21 0.11
36 7 0.04
37 4 0.02
38 20 0.10
ACGTcount: A:0.19, C:0.36, G:0.13, T:0.33
Consensus pattern (33 bp):
CCCACAACTCCGTGGCACTCTTTTCCTTTTAAG
Found at i:67154 original size:34 final size:31
Alignment explanation
Indices: 67112--67251 Score: 180
Period size: 34 Copynumber: 4.5 Consensus size: 31
67102 GACATCTTTC
67112 ACCCTCTCTAAAGCCCACACAAGTCGGTGGCAA
1 ACCCTCTC-AAAGCCCACACAAGTCGGTGGC-A
*
67145 ACCCTTCTCTAAAGCCCACACAAGTTGGTGGCA
1 ACCC-TCTC-AAAGCCCACACAAGTCGGTGGCA
* *
67178 ACCCCCTCAAAGCCCACACAAGTTGGTGGCA
1 ACCCTCTCAAAGCCCACACAAGTCGGTGGCA
67209 A-CC-C-CAAAGCCCACACAAGTCGGTGGCA
1 ACCCTCTCAAAGCCCACACAAGTCGGTGGCA
*
67237 ACCC-CTCTAAGCCCA
1 ACCCTCTCAAAGCCCA
67252 ATATAGCTGG
Statistics
Matches: 100, Mismatches: 4, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
28 24 0.24
29 4 0.04
30 10 0.10
31 24 0.24
32 3 0.03
33 9 0.09
34 26 0.26
ACGTcount: A:0.29, C:0.39, G:0.18, T:0.14
Consensus pattern (31 bp):
ACCCTCTCAAAGCCCACACAAGTCGGTGGCA
Found at i:67362 original size:49 final size:49
Alignment explanation
Indices: 67244--67612 Score: 438
Period size: 49 Copynumber: 7.7 Consensus size: 49
67234 GCAACCCCTC
* *
67244 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTCATCTT
* * *
67296 GAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
67345 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
67394 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
67437 TAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
67486 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
67529 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC--CTT-CATCTT
* *
67581 TAAGTTCAATGTAGCTGGCCTTGAATCAGCAC
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCAC
67613 GTTGACATCC
Statistics
Matches: 275, Mismatches: 27, Indels: 30
0.83 0.08 0.09
Matches are distributed among these distances:
43 78 0.28
45 2 0.01
47 1 0.00
49 126 0.46
50 1 0.00
51 1 0.00
52 66 0.24
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
Found at i:67463 original size:92 final size:92
Alignment explanation
Indices: 67342--67612 Score: 470
Period size: 92 Copynumber: 2.9 Consensus size: 92
67332 GCACCTTCAT
*
67342 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
67407 GCTGGCCTTGACTCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
*
67434 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
67499 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* *
67526 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG--CATCTT-CATCTTTAAGTCCAAT
67591 GTAGCTGGCCTTGAATCAGCAC
63 GTAGCTGGCCTTGAATCAGCAC
67613 GTTGACATCC
Statistics
Matches: 171, Mismatches: 5, Indels: 3
0.96 0.03 0.02
Matches are distributed among these distances:
92 129 0.75
94 5 0.03
95 37 0.22
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.32
Consensus pattern (92 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:67655 original size:55 final size:55
Alignment explanation
Indices: 67526--67908 Score: 280
Period size: 55 Copynumber: 6.7 Consensus size: 55
67516 ACATTGGCAC
* *
67526 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA--CATTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * **
67578 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * * * *
67633 CTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATT-G-A-C---ATC-CTTTT-TC-TCAT
* *
67697 CATTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAT-C----T-TCAT
1 C--TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * **
67748 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * * * * *
67803 CTTTAGGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATT-G-A-C---ATC-C-TTT-T--TC-TC
67868 AT
54 AT
*
67870 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTG
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTG
67909 GCACCTTCAT
Statistics
Matches: 257, Mismatches: 42, Indels: 50
0.74 0.12 0.14
Matches are distributed among these distances:
49 36 0.14
50 1 0.00
51 5 0.02
52 37 0.14
53 1 0.00
54 7 0.03
55 64 0.25
56 2 0.01
57 2 0.01
58 3 0.01
60 2 0.01
61 6 0.02
62 6 0.02
63 6 0.02
64 6 0.02
65 1 0.00
66 36 0.14
67 36 0.14
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.37
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
Found at i:67815 original size:170 final size:171
Alignment explanation
Indices: 67526--67919 Score: 709
Period size: 170 Copynumber: 2.3 Consensus size: 171
67516 ACATTGGCAC
*
67526 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG--CATCTT-CATCTTTAAGTTCAAT
67591 GTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCC
63 GTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCC
67656 ATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCATCAT
128 ATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCATCAT
*
67700 -TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
*
67764 GCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAGGCCCAATATCGTTGGCCATG
66 GCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCATG
67829 AATCAACATATTGGCATCTTTATCACTTTTCTCATCATCAT
131 AATCAACATATTGGCATCTTTATCACTTTTCTCATCATCAT
* *
67870 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATC
67920 ATCTCTAAAA
Statistics
Matches: 214, Mismatches: 5, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
170 124 0.58
171 52 0.24
173 38 0.18
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (171 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
GCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCATG
AATCAACATATTGGCATCTTTATCACTTTTCTCATCATCAT
Found at i:68756 original size:13 final size:13
Alignment explanation
Indices: 68738--68762 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68728 CATAAAATGT
68738 TGTATCGATACAA
1 TGTATCGATACAA
68751 TGTATCGATACA
1 TGTATCGATACA
68763 TTTTTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:68846 original size:13 final size:13
Alignment explanation
Indices: 68828--68852 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68818 ATTACTCACA
68828 TGTATCGATACAT
1 TGTATCGATACAT
68841 TGTATCGATACA
1 TGTATCGATACA
68853 CTGATTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:68904 original size:52 final size:51
Alignment explanation
Indices: 68841--68981 Score: 219
Period size: 52 Copynumber: 2.7 Consensus size: 51
68831 ATCGATACAT
**
68841 TGTATCGATACACTGATTTTTGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACACT-ATTAATGTATCGATACATGCAGGCAAATTTGCCCAGA
* *
68893 TGTATCGATACATTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACACTAT-TAATGTATCGATACATGCAGGCAAATTTGCCCAGA
68945 TGTATCGATACACTATTAAATGTATCGATACATGCAG
1 TGTATCGATACACTATT-AATGTATCGATACATGCAG
68982 TAACTTTTCA
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
51 2 0.02
52 79 0.98
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (51 bp):
TGTATCGATACACTATTAATGTATCGATACATGCAGGCAAATTTGCCCAGA
Found at i:77193 original size:30 final size:31
Alignment explanation
Indices: 77159--77298 Score: 196
Period size: 30 Copynumber: 4.6 Consensus size: 31
77149 TCTTTTAAGT
* *
77159 AGTCCACGACTCAGTGGCATCTTTCCTT-AA
1 AGTCCACGACTCAGTGGCATTTTTTCTTCAA
*
77189 AGTCCACGACTCAGTGGCATTTTGTC-TCAA
1 AGTCCACGACTCAGTGGCATTTTTTCTTCAA
77219 AGTCCACGACTCAGT-GCATTTTTTCTTCAA
1 AGTCCACGACTCAGTGGCATTTTTTCTTCAA
*
77249 AGCCCACGACTCAGTGGCATTTTTTCTTCAA
1 AGTCCACGACTCAGTGGCATTTTTTCTTCAA
* * *
77280 AGCCCACAACTCTGTGGCA
1 AGTCCACGACTCAGTGGCA
77299 CACTTTTTCT
Statistics
Matches: 100, Mismatches: 7, Indels: 5
0.89 0.06 0.04
Matches are distributed among these distances:
29 10 0.10
30 58 0.58
31 32 0.32
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.30
Consensus pattern (31 bp):
AGTCCACGACTCAGTGGCATTTTTTCTTCAA
Found at i:77320 original size:35 final size:35
Alignment explanation
Indices: 77244--77477 Score: 282
Period size: 35 Copynumber: 6.7 Consensus size: 35
77234 GCATTTTTTC
* * *
77244 TTCAAAGCCCACGACTCAGTGG--CA-TTTTT-TC
1 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTT
77275 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTT
1 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTT
* * *
77310 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTT
1 TTCAAAGCCCACAACTCTGTGGCACACTTTTT--CTT
77347 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTT
1 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTT
* * *
77382 TTCAAAGCCCACAATTCTATGGCACTCTTTTTTCCCTT
1 TTCAAAGCCCACAACTCTGTGGCACAC-TTTTT--CTT
77420 TTCAAAGCCCACAACTCTGTGGCACAC--TTTCTT
1 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTT
* *
77453 TTTAAAGCCCACAACTCCGTGGCAC
1 TTCAAAGCCCACAACTCTGTGGCAC
77478 TCCCACAACT
Statistics
Matches: 177, Mismatches: 17, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
31 20 0.11
33 28 0.16
34 5 0.03
35 60 0.34
36 5 0.03
37 32 0.18
38 27 0.15
ACGTcount: A:0.23, C:0.32, G:0.12, T:0.33
Consensus pattern (35 bp):
TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTT
Found at i:77361 original size:72 final size:73
Alignment explanation
Indices: 77275--77479 Score: 353
Period size: 72 Copynumber: 2.8 Consensus size: 73
77265 GCATTTTTTC
77275 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTC-TT
1 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
77339 TTTCCCTT
66 TTTCCCTT
* * **
77347 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTTTTCAAAGCCCACAATTCTATGGCACTCTTT
1 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
77412 TTTCCCTT
66 TTTCCCTT
77420 TTCAAAGCCCACAACTCTGTGGCACAC--TTTCTTTTTAAAGCCCACAACTCCGTGGCACTC
1 TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTC
77480 CCACAACTCC
Statistics
Matches: 124, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
71 29 0.23
72 58 0.47
73 37 0.30
ACGTcount: A:0.22, C:0.33, G:0.11, T:0.33
Consensus pattern (73 bp):
TTCAAAGCCCACAACTCTGTGGCACACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
TTTCCCTT
Found at i:77484 original size:19 final size:19
Alignment explanation
Indices: 77460--77496 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
77450 CTTTTTAAAG
77460 CCCACAACTCCGTGGCACT
1 CCCACAACTCCGTGGCACT
77479 CCCACAACTCCGTGGCAC
1 CCCACAACTCCGTGGCAC
77497 CTTCTTTTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.22, C:0.49, G:0.16, T:0.14
Consensus pattern (19 bp):
CCCACAACTCCGTGGCACT
Found at i:77545 original size:27 final size:27
Alignment explanation
Indices: 77505--77564 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
77495 ACCTTCTTTT
*
77505 CCTTCTAAGCCCACAACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCAC
* *
77532 CCTTTTAAGTCCACGACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCAC
*
77559 TCTTTT
1 CCTTTT
77565 CCTTTAAAGC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.18, C:0.38, G:0.15, T:0.28
Consensus pattern (27 bp):
CCTTTTAAGCCCACAACTCCGTGGCAC
Found at i:77569 original size:33 final size:33
Alignment explanation
Indices: 77479--77733 Score: 274
Period size: 33 Copynumber: 7.7 Consensus size: 33
77469 CCGTGGCACT
*
77479 CCCACAACTCCGTGGCACCTTCTTTTCCTTCTAAG
1 CCCACAACTCCGTGGCA-C-TCTTTTCCTTTTAAG
77514 CCCACAACTCCGTGGCA--C----CCTTTTAAG
1 CCCACAACTCCGTGGCACTCTTTTCCTTTTAAG
* * *
77541 TCCACGACTCCGTGGCACTCTTTTCCTTTAAAG
1 CCCACAACTCCGTGGCACTCTTTTCCTTTTAAG
* *
77574 CCCACAACTACGTGGCACTCTTTTCCTTCTAAG
1 CCCACAACTCCGTGGCACTCTTTTCCTTTTAAG
*
77607 CCCACAACTCCGTGGCACTCTTTTTCCTTCTAAG
1 CCCACAACTCCGTGGCACTC-TTTTCCTTTTAAG
77641 CCCACAACTCCGTGGCACTCTTTTTTTCCTTTTTAAAG
1 CCCACAACTCCGTGGCACTC---TTTTCC-TTTT-AAG
*
77679 CCCACAACTCTGTGGCAC-CTTGTTCCTTTTAAG
1 CCCACAACTCCGTGGCACTCTT-TTCCTTTTAAG
* * *
77712 TCCACAACTTCGTGACA-TCTTT
1 CCCACAACTCCGTGGCACTCTTT
77734 CACCCTCTCT
Statistics
Matches: 191, Mismatches: 16, Indels: 29
0.81 0.07 0.12
Matches are distributed among these distances:
27 23 0.12
29 1 0.01
31 1 0.01
32 1 0.01
33 74 0.39
34 39 0.20
35 21 0.11
36 7 0.04
37 4 0.02
38 20 0.10
ACGTcount: A:0.19, C:0.36, G:0.13, T:0.33
Consensus pattern (33 bp):
CCCACAACTCCGTGGCACTCTTTTCCTTTTAAG
Found at i:77777 original size:34 final size:31
Alignment explanation
Indices: 77735--77874 Score: 180
Period size: 34 Copynumber: 4.5 Consensus size: 31
77725 GACATCTTTC
77735 ACCCTCTCTAAAGCCCACACAAGTCGGTGGCAA
1 ACCCTCTC-AAAGCCCACACAAGTCGGTGGC-A
*
77768 ACCCTTCTCTAAAGCCCACACAAGTTGGTGGCA
1 ACCC-TCTC-AAAGCCCACACAAGTCGGTGGCA
* *
77801 ACCCCCTCAAAGCCCACACAAGTTGGTGGCA
1 ACCCTCTCAAAGCCCACACAAGTCGGTGGCA
77832 A-CC-C-CAAAGCCCACACAAGTCGGTGGCA
1 ACCCTCTCAAAGCCCACACAAGTCGGTGGCA
*
77860 ACCC-CTCTAAGCCCA
1 ACCCTCTCAAAGCCCA
77875 ATATAGCTGG
Statistics
Matches: 100, Mismatches: 4, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
28 24 0.24
29 4 0.04
30 10 0.10
31 24 0.24
32 3 0.03
33 9 0.09
34 26 0.26
ACGTcount: A:0.29, C:0.39, G:0.18, T:0.14
Consensus pattern (31 bp):
ACCCTCTCAAAGCCCACACAAGTCGGTGGCA
Found at i:77985 original size:49 final size:49
Alignment explanation
Indices: 77867--78235 Score: 438
Period size: 49 Copynumber: 7.7 Consensus size: 49
77857 GCAACCCCTC
* *
77867 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTCATCTT
* * *
77919 GAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
77968 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
78017 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
78060 TAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
78109 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
78152 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC--CTT-CATCTT
* *
78204 TAAGTTCAATGTAGCTGGCCTTGAATCAGCAC
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCAC
78236 GTTGACATCC
Statistics
Matches: 275, Mismatches: 27, Indels: 30
0.83 0.08 0.09
Matches are distributed among these distances:
43 78 0.28
45 2 0.01
47 1 0.00
49 126 0.46
50 1 0.00
51 1 0.00
52 66 0.24
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
Found at i:78086 original size:92 final size:92
Alignment explanation
Indices: 77965--78235 Score: 470
Period size: 92 Copynumber: 2.9 Consensus size: 92
77955 GCACCTTCAT
*
77965 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
78030 GCTGGCCTTGACTCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
*
78057 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
78122 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* *
78149 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG--CATCTT-CATCTTTAAGTCCAAT
78214 GTAGCTGGCCTTGAATCAGCAC
63 GTAGCTGGCCTTGAATCAGCAC
78236 GTTGACATCC
Statistics
Matches: 171, Mismatches: 5, Indels: 3
0.96 0.03 0.02
Matches are distributed among these distances:
92 129 0.75
94 5 0.03
95 37 0.22
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.32
Consensus pattern (92 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:78278 original size:55 final size:55
Alignment explanation
Indices: 78149--78527 Score: 272
Period size: 55 Copynumber: 6.6 Consensus size: 55
78139 ACATTGGCAC
* *
78149 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA--CATTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * **
78201 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * * * *
78256 CTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATT-G-A-C---ATC-CTTTT-TC-TCAT
* *
78320 CATTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAT-C----T-TCAT
1 C--TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * **
78371 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * * * * *
78426 CTTTAGGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATT-G-A-C---ATC-C-TTT-T--TC-TC
78491 AT
54 AT
*
78493 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
78528 TGGCACCTTC
Statistics
Matches: 253, Mismatches: 42, Indels: 49
0.74 0.12 0.14
Matches are distributed among these distances:
49 36 0.14
50 1 0.00
51 5 0.02
52 37 0.15
53 1 0.00
54 7 0.03
55 64 0.25
56 2 0.01
57 2 0.01
58 3 0.01
60 2 0.01
61 6 0.02
62 6 0.02
63 6 0.02
64 6 0.02
65 1 0.00
66 35 0.14
67 33 0.13
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.37
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
Found at i:78438 original size:170 final size:171
Alignment explanation
Indices: 78149--78540 Score: 691
Period size: 170 Copynumber: 2.3 Consensus size: 171
78139 ACATTGGCAC
*
78149 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG--CATCTT-CATCTTTAAGTTCAAT
78214 GTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCC
63 GTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCC
78279 ATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCATCAT
128 ATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCATCAT
*
78323 -TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
*
78387 GCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAGGCCCAATATCGTTGGCCATG
66 GCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCATG
78452 AATCAACATATTGGCATCTTTATCACTTTTCTCATCATCAT
131 AATCAACATATTGGCATCTTTATCACTTTTCTCATCATCAT
* *
78493 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGC--ATTGGCACCTTCATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATC
78541 ATCTCTAAAA
Statistics
Matches: 212, Mismatches: 5, Indels: 7
0.95 0.02 0.03
Matches are distributed among these distances:
169 14 0.07
170 124 0.58
171 36 0.17
173 38 0.18
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.36
Consensus pattern (171 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
GCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCATG
AATCAACATATTGGCATCTTTATCACTTTTCTCATCATCAT
Found at i:79375 original size:13 final size:13
Alignment explanation
Indices: 79357--79381 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79347 CATAAAATGT
79357 TGTATCGATACAA
1 TGTATCGATACAA
79370 TGTATCGATACA
1 TGTATCGATACA
79382 TTTTTTTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:79466 original size:13 final size:13
Alignment explanation
Indices: 79448--79472 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79438 ATTACTCACA
79448 TGTATCGATACAT
1 TGTATCGATACAT
79461 TGTATCGATACA
1 TGTATCGATACA
79473 CTGATTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:79524 original size:52 final size:51
Alignment explanation
Indices: 79461--79601 Score: 219
Period size: 52 Copynumber: 2.7 Consensus size: 51
79451 ATCGATACAT
**
79461 TGTATCGATACACTGATTTTTGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACACT-ATTAATGTATCGATACATGCAGGCAAATTTGCCCAGA
* *
79513 TGTATCGATACATTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACACTAT-TAATGTATCGATACATGCAGGCAAATTTGCCCAGA
79565 TGTATCGATACACTATTAAATGTATCGATACATGCAG
1 TGTATCGATACACTATT-AATGTATCGATACATGCAG
79602 TAACTTTTCA
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
51 2 0.02
52 79 0.98
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (51 bp):
TGTATCGATACACTATTAATGTATCGATACATGCAGGCAAATTTGCCCAGA
Done.