genome.fa.s2036.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2036
Parameters: 2 7 7 80 10 50 1000
Length:  93304

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106--140	16	2.2	16	90	5	54	11	20	14	54	1.70
4204--4229	13	2.0	13	100	0	52	30	15	15	38	1.88
4184--4247	32	2.0	33	90	3	103	28	14	15	42	1.86
6320--6767	166	2.8	165	81	10	494	30	11	7	50	1.66
6611--6636	13	2.0	13	100	0	52	15	7	7	69	1.35
15535--15607	20	3.6	20	81	3	101	35	13	19	31	1.91
15553--15628	21	3.7	21	80	3	100	42	11	17	28	1.84
15535--15628	41	2.3	41	98	0	179	39	12	18	29	1.88
28546--28720	71	2.4	71	77	7	190	23	21	14	41	1.89
28664--28772	56	1.9	56	88	3	166	26	26	11	34	1.91
28720--28925	74	2.7	76	83	7	251	24	23	14	36	1.93
28720--28967	76	3.4	74	78	9	260	25	24	15	35	1.94
28864--28997	69	2.0	69	79	7	150	27	25	15	31	1.96
42404--42435	16	2.0	16	100	0	64	18	12	0	68	1.20
48057--48129	20	3.8	20	83	7	105	38	12	17	31	1.87
49007--49492	28	16.8	28	79	6	434	24	17	28	29	1.97
49007--49498	58	8.5	58	78	6	473	24	17	28	29	1.97
49007--49492	86	5.6	85	82	5	542	24	17	28	29	1.97
50731--50822	8	11.6	8	76	11	75	1	2	11	84	0.76
50731--50823	10	9.4	10	79	13	104	1	2	11	84	0.75
50731--50822	19	4.7	19	82	16	116	1	2	11	84	0.76
50760--50823	1	64.0	1	80	0	65	0	0	10	89	0.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50731--50825	9	9.8	9	80	14	93	1	2	12	84	0.77
56687--56768	28	2.9	28	83	7	96	25	17	32	24	1.96
56748--56920	52	3.4	51	80	5	195	32	11	25	30	1.91
56892--56948	28	1.9	28	86	10	78	28	17	31	22	1.97
56906--56977	27	2.6	27	86	2	90	20	20	34	23	1.96
59430--59455	13	2.0	13	100	0	52	38	15	15	30	1.88
59409--59475	33	2.0	33	88	0	98	43	16	14	25	1.86
59517--59541	13	1.9	13	100	0	50	32	16	16	36	1.90
59498--59560	32	2.0	32	93	0	108	38	15	12	33	1.86
59495--59562	19	3.9	19	76	21	76	39	14	11	33	1.83
69734--69773	21	2.0	21	90	5	64	57	10	10	22	1.61
70183--70211	13	2.1	14	93	6	51	6	0	20	72	1.07
70632--70745	20	5.7	20	84	0	147	40	12	15	31	1.85
73134--73175	22	1.9	22	95	0	75	35	19	23	21	1.96
84126--84192	33	2.0	33	88	0	98	40	14	11	32	1.83
84148--84172	13	1.9	13	100	0	50	32	16	16	36	1.90
84897--85218	52	6.4	49	78	8	292	31	17	25	24	1.97
84897--85228	101	3.3	99	85	5	393	31	17	25	25	1.97
86673--86740	19	3.9	19	74	21	76	35	10	14	39	1.80
86675--86737	32	2.0	32	93	0	108	34	11	15	38	1.83
86780--86805	13	2.0	13	100	0	52	30	15	15	38	1.88
86760--86826	33	2.0	33	88	0	98	25	14	16	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89331--89500	52	3.3	53	78	11	181	28	25	13	32	1.94
89160--89567	212	1.9	212	86	4	579	28	27	12	31	1.93

Tables:   1

The End!