Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2040
Parameters: 2 7 7 80 10 50 1000
Length:  59511

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1434--1595
34
4.8
33
85
6
218
18
32
12
37
1.88
1427--1590
67
2.4
68
87
8
235
18
32
12
35
1.88
1529--1644
34
3.9
28
79
14
101
22
31
16
30
1.96
1583--1690
28
3.8
28
75
7
94
30
30
17
21
1.96
1807--2042
49
4.7
49
82
6
260
25
25
19
30
1.98
2866--2929
19
3.7
19
70
23
68
34
14
14
37
1.86
2867--2934
32
2.1
32
94
0
118
35
13
14
36
1.85
3015--3145
53
2.5
53
93
1
228
33
17
18
30
1.94
6555--6595
20
2.0
20
86
9
57
0
19
12
68
1.21
6551--6617
27
2.5
26
77
15
66
1
16
11
70
1.24
6555--6622
21
3.0
22
77
12
66
1
14
13
70
1.24
6652--6712
27
2.3
26
80
11
61
3
16
8
72
1.23
10976--11004
14
2.1
14
100
0
58
24
27
20
27
1.99
13461--13485
13
1.9
13
100
0
50
32
16
16
36
1.90
13535--13587
19
2.7
19
88
2
70
32
18
18
30
1.96
14735--14801
33
2.1
32
88
2
98
34
10
19
35
1.86
16887--16926
20
2.0
21
85
5
55
5
20
50
25
1.68
23545--23570
13
2.0
13
100
0
52
38
15
15
30
1.88
23523--23590
33
2.1
33
94
2
120
32
13
20
33
1.91
29383--29507
20
5.7
20
70
18
97
42
12
15
30
1.83
29383--29569
51
3.9
51
76
14
225
42
11
17
28
1.83
29386--29558
91
1.9
91
96
0
319
42
11
16
29
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32822--32949
63
2.0
63
96
0
238
25
16
21
36
1.94
33975--34214
41
5.9
41
79
5
209
37
13
10
38
1.79
33975--34187
81
2.6
81
81
2
239
36
14
10
38
1.81
35491--35606
58
2.0
57
86
1
160
34
18
15
31
1.93
40435--40487
19
2.7
19
91
2
79
35
16
16
30
1.92
40435--40507
20
3.7
20
85
3
85
34
16
17
31
1.93
43299--43511
91
2.3
90
92
3
347
33
16
14
35
1.89
51281--51347
33
2.0
33
82
0
80
26
31
13
28
1.94
52279--52333
19
2.8
20
88
2
85
34
14
16
34
1.89
52873--52898
13
2.0
13
100
0
52
38
15
15
30
1.88
55129--55173
21
2.1
21
84
8
56
53
4
20
22
1.63
56975--57005
15
2.1
15
93
0
53
48
16
22
12
1.80
59285--59366
28
2.9
28
80
7
96
26
17
31
24
1.97
59349--59511
52
3.2
50
77
6
173
34
9
25
30
1.88

Tables:   1

The End!