Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2043
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 49080
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33
Found at i:3242 original size:10 final size:10
Alignment explanation
Indices: 3227--3272 Score: 60
Period size: 10 Copynumber: 4.7 Consensus size: 10
3217 CTCAAATAAT
*
3227 TTTTTTTCAC
1 TTTTTTTCAA
3237 TTTTTTTC--
1 TTTTTTTCAA
3245 TTTCTTTTCAA
1 TTT-TTTTCAA
3256 TTTTTTTCAA
1 TTTTTTTCAA
3266 TTTTTTT
1 TTTTTTT
3273 TCTTTTATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
8 3 0.09
9 5 0.15
10 22 0.67
11 3 0.09
ACGTcount: A:0.11, C:0.13, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTTTTTCAA
Found at i:3269 original size:26 final size:25
Alignment explanation
Indices: 3240--3290 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
3230 TTTTCACTTT
3240 TTTTCTTTCTTTTCAATTTTTTTCAA
1 TTTTCTTTCTTTT-AATTTTTTTCAA
* *
3266 TTTTTTTTCTTTTATTTTTTTTCAA
1 TTTTCTTTCTTTTAATTTTTTTCAA
3291 AGCAAATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.14, C:0.12, G:0.00, T:0.75
Consensus pattern (25 bp):
TTTTCTTTCTTTTAATTTTTTTCAA
Found at i:3271 original size:19 final size:18
Alignment explanation
Indices: 3228--3271 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
3218 TCAAATAATT
* *
3228 TTTTTTCACTTTTTTTCT
1 TTTTTTCAATTTTTTTCA
3246 TTCTTTTCAATTTTTTTCAA
1 TT-TTTTCAATTTTTTTC-A
3266 TTTTTT
1 TTTTTT
3272 TTCTTTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 2 0.09
19 18 0.82
20 2 0.09
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.75
Consensus pattern (18 bp):
TTTTTTCAATTTTTTTCA
Found at i:17513 original size:41 final size:41
Alignment explanation
Indices: 17452--17533 Score: 114
Period size: 41 Copynumber: 2.0 Consensus size: 41
17442 ATCAATGATA
* *
17452 TTCAAATACTATCATATGTAAAGTTACGT-TAATTGATTTCC
1 TTCAAATACCATCATATGTAAAGTTAC-TCCAATTGATTTCC
17493 TTCAAATACCATCACT-TGTAAAGTTACTCCAATTGATTTCC
1 TTCAAATACCATCA-TATGTAAAGTTACTCCAATTGATTTCC
17534 GTTGTCTTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
40 1 0.03
41 35 0.95
42 1 0.03
ACGTcount: A:0.33, C:0.20, G:0.09, T:0.39
Consensus pattern (41 bp):
TTCAAATACCATCATATGTAAAGTTACTCCAATTGATTTCC
Found at i:18964 original size:22 final size:23
Alignment explanation
Indices: 18932--18988 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
18922 GTAACAGAGC
*
18932 AATCGAGTTTAACATTTGAATT-
1 AATCGAGTTTAACATTCGAATTA
* * *
18954 AATTGAGTTTAATATTCGGATTA
1 AATCGAGTTTAACATTCGAATTA
18977 AATCGAGTTTAA
1 AATCGAGTTTAA
18989 GTTATTATAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 18 0.62
23 11 0.38
ACGTcount: A:0.37, C:0.07, G:0.16, T:0.40
Consensus pattern (23 bp):
AATCGAGTTTAACATTCGAATTA
Found at i:22659 original size:20 final size:20
Alignment explanation
Indices: 22634--22849 Score: 135
Period size: 20 Copynumber: 9.7 Consensus size: 20
22624 TTTTAACTAG
22634 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
22654 ATGTATCGATACATTTGGAAAAAAAGATAGA
1 ATGTATCGATACA-TT-G------A-A-A-A
* *
22685 ATGTAACGATACATTGAATA
1 ATGTATCGATACATTGAAAA
* * *
22705 ATGTATCGATACATTCATAC
1 ATGTATCGATACATTGAAAA
*
22725 ATGTATTGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
22745 ATGTATCGATACATCTGGGTAAAAAAATAAA
1 ATGTATCGATACAT-T--G-------A-AAA
*
22776 ATGTATCGATACATTGAAGA
1 ATGTATCGATACATTGAAAA
* * *
22796 ATGTATCGATACATTCATAC
1 ATGTATCGATACATTGAAAA
22816 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
*
22836 CTGTATCGATACAT
1 ATGTATCGATACAT
22850 CTGGGTAAAA
Statistics
Matches: 153, Mismatches: 21, Indels: 44
0.70 0.10 0.20
Matches are distributed among these distances:
20 106 0.69
21 4 0.03
22 2 0.01
23 2 0.01
28 2 0.01
29 2 0.01
30 5 0.03
31 30 0.20
ACGTcount: A:0.43, C:0.12, G:0.15, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACATTGAAAA
Found at i:22695 original size:51 final size:48
Alignment explanation
Indices: 22634--22810 Score: 181
Period size: 51 Copynumber: 3.7 Consensus size: 48
22624 TTTTAACTAG
22634 ATGTATCGATACATTGAAAAATGTATCGATACATTTGGAAAAAAAGATAGA
1 ATGTATCGATACATTGAAAAATGTATCGATACATTTGG-AAAAAA-ATA-A
* * * *
22685 ATGTAACGATACATTGAATAATGTATCGATACA-TT-------CATAC
1 ATGTATCGATACATTGAAAAATGTATCGATACATTTGGAAAAAAATAA
* *
22725 ATGTATTGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAAATAAA
1 ATGTATCGATACATTGAAAAATGTATCGATACAT-TTGG-AAAAAAAT-AA
*
22776 ATGTATCGATACATTGAAGAATGTATCGATACATT
1 ATGTATCGATACATTGAAAAATGTATCGATACATT
22811 CATACATGTA
Statistics
Matches: 103, Mismatches: 12, Indels: 23
0.75 0.09 0.17
Matches are distributed among these distances:
40 30 0.29
41 3 0.03
42 1 0.01
50 5 0.05
51 64 0.62
ACGTcount: A:0.44, C:0.10, G:0.16, T:0.31
Consensus pattern (48 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATTTGGAAAAAAATAA
Found at i:22743 original size:91 final size:91
Alignment explanation
Indices: 22634--22860 Score: 366
Period size: 91 Copynumber: 2.5 Consensus size: 91
22624 TTTTAACTAG
* *
22634 ATGTATCGATACATTGAAAAATGTATCGATACAT-TTGGAAAAAAAGATAGAATGTAACGATACA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGAAAAAAA-ATAAAATGTAACGATACA
*
22698 TTGAATAATGTATCGATACATTCATAC
65 TTGAAGAATGTATCGATACATTCATAC
* * *
22725 ATGTATTGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAAATAAAATGTATCGATACAT
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGAAAAAAAATAAAATGTAACGATACAT
22790 TGAAGAATGTATCGATACATTCATAC
66 TGAAGAATGTATCGATACATTCATAC
* *
22816 ATGTATCGATACATTGAAAACTGTATCGATACATCTGGGTAAAAA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGAAAAAA
22861 TGTGACTTTT
Statistics
Matches: 127, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
91 118 0.93
92 9 0.07
ACGTcount: A:0.43, C:0.11, G:0.16, T:0.30
Consensus pattern (91 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGAAAAAAAATAAAATGTAACGATACAT
TGAAGAATGTATCGATACATTCATAC
Found at i:23609 original size:48 final size:48
Alignment explanation
Indices: 23547--23724 Score: 252
Period size: 48 Copynumber: 3.8 Consensus size: 48
23537 AGAAGAGTGC
** * *
23547 CAATGTGCCAATTCAAGGCCAACGACATCGAGCTAAGGGAAAAGTTGA
1 CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAAGGGAAAAGTGGA
23595 CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAAGGGAAAAGTGGA
1 CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAAGGGAAAAGTGGA
* * *
23643 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAA--TAAAGGTGGA
1 CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAAGGGAAAAGTGGA
* * *
23689 CAATGTGCTGATTCAAGGCTAGCGAGATTGAGCTAA
1 CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAA
23725 TAAAGGTGCC
Statistics
Matches: 121, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
46 42 0.35
48 79 0.65
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (48 bp):
CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAAGGGAAAAGTGGA
Found at i:23669 original size:25 final size:24
Alignment explanation
Indices: 23641--23713 Score: 62
Period size: 25 Copynumber: 3.1 Consensus size: 24
23631 GGGAAAAGTG
23641 GACAATGTGCTGATTCAAGGCCAGC
1 GACAATGTGCTGATTCAAGG-CAGC
* * * * *
23666 GACATTGAGCT-AATAAAGG-TG-
1 GACAATGTGCTGATTCAAGGCAGC
23687 GACAATGTGCTGATTCAAGGCTAGC
1 GACAATGTGCTGATTCAAGGC-AGC
23712 GA
1 GA
23714 GATTGAGCTA
Statistics
Matches: 34, Mismatches: 10, Indels: 8
0.65 0.19 0.15
Matches are distributed among these distances:
21 9 0.26
22 7 0.21
24 7 0.21
25 11 0.32
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.22
Consensus pattern (24 bp):
GACAATGTGCTGATTCAAGGCAGC
Found at i:23690 original size:21 final size:22
Alignment explanation
Indices: 23664--23733 Score: 61
Period size: 21 Copynumber: 3.1 Consensus size: 22
23654 TTCAAGGCCA
23664 GCGACATTGAGCTAATAAAGGT
1 GCGACATTGAGCTAATAAAGGT
* * * *
23686 G-GACAATGTGCTGATTCAAGGCT
1 GCGACATTGAGCT-AATAAAGG-T
*
23709 AGCGAGATTGAGCTAATAAAGGT
1 -GCGACATTGAGCTAATAAAGGT
23732 GC
1 GC
23734 CAATATGCTG
Statistics
Matches: 35, Mismatches: 9, Indels: 8
0.67 0.17 0.15
Matches are distributed among these distances:
21 9 0.26
22 9 0.26
23 2 0.06
24 7 0.20
25 8 0.23
ACGTcount: A:0.33, C:0.14, G:0.30, T:0.23
Consensus pattern (22 bp):
GCGACATTGAGCTAATAAAGGT
Found at i:23705 original size:46 final size:47
Alignment explanation
Indices: 23547--23758 Score: 250
Period size: 48 Copynumber: 4.5 Consensus size: 47
23537 AGAAGAGTGC
** * * *
23547 CAATGTGCCAATTCAAGGCCAACGACATCGAGCTAAGGGAAAAGTTGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAA-GGAAAAGTGGA
*
23595 CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAAGGGAAAAGTGGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAA-GGAAAAGTGGA
* *
23643 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAA-TAAAGGTGGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGAAAAGTGGA
* * * * *
23689 CAATGTGCTGATTCAAGGCTAGCGAGATTGAGCTAA-TAAAGGT-GC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGAAAAGTGGA
* *
23734 CAATATGCTGATTCAATGCCAGCGA
1 CAATGTGCTGATTCAAGGCCAGCGA
23759 TATCGGACTT
Statistics
Matches: 151, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
45 23 0.15
46 49 0.32
48 79 0.52
ACGTcount: A:0.34, C:0.18, G:0.27, T:0.21
Consensus pattern (47 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGAAAAGTGGA
Found at i:23937 original size:28 final size:28
Alignment explanation
Indices: 23872--28286 Score: 3993
Period size: 28 Copynumber: 157.0 Consensus size: 28
23862 CACCGACTTG
23872 TGTGGGCTTTGAAAGGGGATGCCACTGACT
1 TGTGGGCTTTGAAA--GGATGCCACTGACT
* * * *
23902 TATGGGCTTTGAAGGGGTACCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
23930 TGTAGGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
23958 TATGGGCTTTGGAAGGGTGCCATTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
23986 TGTGTAGGCTTTGAAATGGTATGCCATTGACT
1 TGTG--GGCTTTGAAA-GG-ATGCCACTGACT
* * *
24018 TGTGGGCTTTGAAAGGGTGCCACTAACG
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
24046 TGTGGGCTTTGAAAGGATGCCGCTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
24074 TGTGGGCTTTGAAAGAATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
24102 TATGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
** *
24130 TGTGGGCTTTGAAAATATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
24158 TGTGGGCTTTAAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
24186 TGTGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
*
24215 TGTGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
*
24244 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
24272 TGTAGGCTTTGAAAATG-TGCCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
**
24300 TGTGGGCTTTGAAAATATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
24328 TGTAGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* * *
24357 TGTGAGCTTTGAAAAGATGCCACTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
24385 TATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
24413 TATGGGCATTGAAAAGG-TGCCACTAACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
* *
24441 TGTGGCCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
24469 TGTGGGCTTTAAAAGGATACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* ** *
24497 TGT-GGCTTTGAAAGGGTGTTACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
24524 TGTGGGCTTTAAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
24552 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
24580 TGTGGGTTTTGAAAAGTTACCA-TTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
24607 TGTGGGCTTTTAAAGAGATGCCACTAACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACT
* * *
24636 TGTGGTCTTTCG-AAGAGATGTCACTAACT
1 TGTGGGCTTT-GAAAG-GATGCCACTGACT
*
24665 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
24693 TGTAGG-TTTTAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
24720 TGTGGGCTTTGAAAAGATGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
24748 T-TTGGCTTTTTG-AAGAGATGCCA-TAGACT
1 TGTGGGC--TTTGAAAG-GATGCCACT-GACT
*
24777 TGTGGGCTTTGAAAGGATGCCACTCACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
24805 TATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
24833 TGTGGGCTTTGAAAGCG-TGCCACTGACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACT
* * *
24861 TGTGGGCTTTGAAAAGAAGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
24889 TGTGGGCTTTGAAAGGATGCCACTAACC
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
24917 TGTGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* *
24946 TGTGGTCTTTTG-AAGAGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* * * *
24975 TGTGGGTTTTGAAAAGATGTCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
25003 TGTGGGCTTTGAAAGGGTGCCATTCATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
25031 TATGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* ** *
25059 TATGAGTTTTTG-AAGAGATGCCACTAACT
1 TGTG-GGCTTTGAAAG-GATGCCACTGACT
* * *
25088 TGTGGGCTTTGAAAAGTTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
25116 TGTGCGCTTTGTAATGA-GACCACTGACT
1 TGTGGGCTTTGAAAGGATG-CCACTGACT
* * *
25144 TGTGAGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
25172 TGTGGGCTTCGAAAGGGTGTCACT-ATCT
1 TGTGGGCTTTGAAAGGATGCCACTGA-CT
*
25200 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
25228 TGTGGGCTTTGAAAAGAAGGCATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
25256 TATGGGCTTTGATAA-GATGCCACTGACT
1 TGTGGGCTTTGA-AAGGATGCCACTGACT
* *
25284 TGTGGGTTTTGAAAGGATACCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
25312 TATGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
** * *
25341 TGTGTTCTTTTG-AAGAGATGCCACTAACC
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* * *
25370 TGTGGGTTTTGAAAGGATTCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
25398 TGTGGGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
25426 TGTGGGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
**
25454 TGTGGGCTTTGAAAATATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
25482 TATGGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* *
25511 TGTAGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
25539 TGTAGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
25567 TGT-GGTTTTCGAAAAGATGCCATTGACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACT
* *
25595 TGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* ** *
25623 TGTGGTCTTCAAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
25651 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
25679 TGTGGGCTTTCATA-GAGTGCTACTAACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACT
*
25707 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
25735 TATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
25763 TGTGGACTTTGAAAGGATGCCACTTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
25791 TGTGGGCTTTGAAAGGGTGCCACTTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
25819 TATGGGCTTTGAAAAGAAGCCATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
25847 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * *
25875 TATGGGATTTAAAAGGGTACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
25903 TGTGGGCTTTAGAAA-AATGCCACTAACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACT
* * *
25931 TGTGAGCTTTTG-AAGAGATGCAACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* * * * *
25960 TGTCGGCTTTCAAATGATGCTACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
25988 TGTAGGCTTTGAAAAGG-TGCCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
* *
26016 TGTGGGCTTTGAAAGGATGCTACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
26044 TGTAGGCTTTGAAAAGG-TGCCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
*
26072 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
26100 TGTGGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
*
26129 TGTGAGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
26157 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
26185 TATGGGCATTGAAAAGG-TACCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
26213 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
26241 TGTGGGCTTTAAAAGGATACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *** *
26269 TGTGGGCTTTGAAAGGGTATTACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
26297 TGTGGGCTTTAAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
26325 TGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
26353 TGTGGGCTTTGAAAAGTTGCCAGT-ACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
26380 TGTGGGCTTTTAAAGAGATGCCACTAACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACT
*
26409 TGTGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
*
26438 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
26466 TGTAGGCTTT-AAAGGGTGTCACTGACC
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
26493 TGTGGGTTTTAAAAAGATGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
26521 TGTGGGTTTTTAAAGAGATGCCATTGACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACT
26550 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
26578 TATGGTCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
26606 TGTGGGCTTTGAAAGGGTGTCACTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
26634 TGTGGGCTTTGAAAAGATGCCAATAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
26662 TGTGGGCTTTGAAAGGATGCCACTAACC
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
26690 TGTGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* *
26719 TGTGGTCTTTTG-AAGAGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* * * * *
26748 TGTGTGTTTTGAAAAGATGTCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
26776 TATGGGTTTTGAAAGGGTGCCACTCATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
26804 TATGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
26832 TGTGGGCTTTTGAAAAGATGCCACTGACT
1 TGTGGGC-TTTGAAAGGATGCCACTGACT
** * ** * *
26861 TGTTTGCTTTGAAAAGATGTGACTAACC
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
26889 TGTGGGCTTTGAAAGGATACCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
26917 TGTGAGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
26945 TGTGGGCTTTAAAAGGGTACCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
26973 TGTGGGCATTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
27001 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
27029 TGTGGGCTTTGATAA-GATGCCACTGACT
1 TGTGGGCTTTGA-AAGGATGCCACTGACT
27057 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
27085 TAG-GGTCTTTTG-AAGAGATGCCACTAACT
1 T-GTGGGC-TTTGAAAG-GATGCCACTGACT
* * *
27114 TGTGTGATTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
27142 TGTGGGCTTTAAAAAGG-TGCCGCTGACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACT
*
27170 TGTGGGCTTTGAAATGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
27198 TGTGGGCTTTTG-AAGAGATGCCATTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
27227 TGTGGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
27256 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
27284 TGTAGGCTTGGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
27312 TGTGGTCTTCGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
27340 TGTGGGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
27368 TGTGGGCTTTGAAA-GAGTGCTACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACT
*
27396 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
27424 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
27452 TGTGGGCTTTGAAAGGATGCCACTTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
27480 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
27508 TGTGGGCTTTGAAAGGAAGCGATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
27536 TGTGGGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
27564 TGTGGGCTTTAAAAGGGTACCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
27592 TGTGGGCTTTGGAAA-AATGCCACTAACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACT
*
27620 TGTGAGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* *
27649 TGTGGGCTTTGAAAAGATGCTACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
27677 TGTGGGCTTTGAAAAGG-TGCTACTGACA
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
*** * ** *
27705 TG-CCACTAACTTG--TGG--G-CTTTGA-A
1 TGTGGGCT---TTGAAAGGATGCCACTGACT
* * * ** *** * ** **
27729 AGAGTGCCACTGACTTG-TGGGCTTTGAAA
1 TGTG-GGCTTTGAAAGGAT-GCCACTGACT
* ** * ** *** * * * **
27758 GGACGCCACTGATTTG-TGGGC-TTTAAA
1 TGTGGGCTTTGAAAGGAT-GCCACTGACT
* ** *** * ** **
27785 AG-GGTGCCACTGACTTG-TGGGCTTTGAAA
1 TGTGG-G-CTTTGAAAGGAT-GCCACTGACT
* * *** * ** *
27814 AGAT--GCTACTGACTTG-TGGGCTTTGA-A
1 TG-TGGGCT-TTGAAAGGAT-GCCACTGACT
* * * *
27841 AG-GGTGCTACTG--A-CATGCCACTAACT
1 TGTGG-GCT-TTGAAAGGATGCCACTGACT
*
27867 TGTGGGCTTTGAAA-GAGCGCCACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACT
* *
27895 TGTGGGCTTTGAAAAGATGTCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
27923 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
27951 TGTAGGCTTT-AAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
27978 TGTGGGCTTTGAAAAGATTCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
28006 TGTGGGTTTTTG-AAGAGATGCCATTGACT
1 TGTGGG-CTTTGAAAG-GATGCCACTGACT
*
28035 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
28063 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * *
28091 TTTGGGGTTTGAAAAGAAGCCATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
28119 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
28147 TGTGGGCTTTAAAAGGGTACCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
28175 TGTGAGCTTTGGAAA-AATGCCACTAACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACT
* *
28203 TGTGAGCTTTTG-AAGATATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
28232 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
28260 TGTGGGCTTTGAAAGGGTGCTACTGAC
1 TGTGGGCTTTGAAAGGATGCCACTGAC
28287 ATGCCACTAA
Statistics
Matches: 3677, Mismatches: 577, Indels: 264
0.81 0.13 0.06
Matches are distributed among these distances:
23 2 0.00
24 2 0.00
25 11 0.00
26 8 0.00
27 193 0.05
28 2724 0.74
29 680 0.18
30 41 0.01
31 2 0.00
32 14 0.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.31
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGATGCCACTGACT
Found at i:23958 original size:56 final size:56
Alignment explanation
Indices: 23872--29326 Score: 5604
Period size: 56 Copynumber: 96.1 Consensus size: 56
23862 CACCGACTTG
* * * *
23872 TGTGGGCTTTGAAAGGGGATGCCACTGACTTATGGGCTTTGAAGGGGTACCACTGACT
1 TGTGGGCTTTGAAA--GGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * * * *
23930 TGTAGGCTTTAAAAGGGTGCCACTGACTTATGGGCTTTGGAAGGGTGCCATTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
23986 TGTGTAGGCTTTGAAATGGTATGCCATTGACTTGTGGGCTTTGAAAGGGTGCCACTAACG
1 TGTG--GGCTTTGAAA-GG-ATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
24046 TGTGGGCTTTGAAAGGATGCCGCTGACTTGTGGGCTTTGAAAGAATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * ** *
24102 TATGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAATATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* *
24158 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTGACT
* *
24215 TGTGGTCTTTTG-AAGAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * **
24272 TGTAGGCTTTGAAAATG-TGCCACTGACTTGTGGGCTTTGAAAATATGCCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
24328 TGTAGGCTTTTG-AAGAGATGCCACTGACTTGTGAGCTTTGAAAAGATGCCACTGATT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
24385 TATGGGCTTTGAAAGGATGCCACTAACTTATGGGCATTGAAAAGG-TGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG-AAAGGATGCCACTGACT
* * * * *
24441 TGTGGCCTTTGAAAAGATGCCACTGACTTGTGGGCTTTAAAAGGATACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* ** * * *
24497 TGT-GGCTTTGAAAGGGTGTTACTAACTTGTGGGCTTTAAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * *
24552 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGTTTTGAAAAGTTACCA-TTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
24607 TGTGGGCTTTTAAAGAGATGCCACTAACTTGTGGTCTTTCG-AAGAGATGTCACTAACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACTTGTGGGCTTT-GAAAG-GATGCCACTGACT
* * * *
24665 TGTGGGCTTTGAAAGGATGCCACTAACTTGTAGG-TTTTAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
24720 TGTGGGCTTTGAAAAGATGCCATTGACTT-TTGGCTTTTTG-AAGAGATGCCA-TAGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC--TTTGAAAG-GATGCCACT-GACT
* * *
24777 TGTGGGCTTTGAAAGGATGCCACTCACTTATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
24833 TGTGGGCTTTGAAAGCG-TGCCACTGACTTGTGGGCTTTGAAAAGAAGCCACTAACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
24889 TGTGGGCTTTGAAAGGATGCCACTAACCTGTGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTGACT
* * * * * *
24946 TGTGGTCTTTTG-AAGAGATGCCACTAACTTGTGGGTTTTGAAAAGATGTCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * *
25003 TGTGGGCTTTGAAAGGGTGCCATTCATTTATGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* ** * * * *
25059 TATGAGTTTTTG-AAGAGATGCCACTAACTTGTGGGCTTTGAAAAGTTGCCACTAACT
1 TGTG-GGCTTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * *
25116 TGTGCGCTTTGTAATGA-GACCACTGACTTGTGAGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATG-CCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
25172 TGTGGGCTTCGAAAGGGTGTCACT-ATCTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGA-CTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * *
25228 TGTGGGCTTTGAAAAGAAGGCATTAACTTATGGGCTTTGATAA-GATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGA-AAGGATGCCACTGACT
* * * *
25284 TGTGGGTTTTGAAAGGATACCACTGACTTATGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTGACT
** * * * * *
25341 TGTGTTCTTTTG-AAGAGATGCCACTAACCTGTGGGTTTTGAAAGGATTCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
25398 TGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
** *
25454 TGTGGGCTTTGAAAATATGCCACTGACTTATGGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTGACT
* * * * *
25511 TGTAGGCTTTGAAAGGATGCCACTAACTTGTAGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
25567 TGT-GGTTTTCGAAAAGATGCCATTGACTTGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* ** * *
25623 TGTGGTCTTCAAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
25679 TGTGGGCTTTCATA-GAGTGCTACTAACTTGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
25735 TATGGGCTTTGAAAGGATGCCACTAACTTGTGGACTTTGAAAGGATGCCACTTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * * *
25791 TGTGGGCTTTGAAAGGGTGCCACTTACTTATGGGCTTTGAAAAGAAGCCATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * * *
25847 TGTGGGCTTTGAAAGGATGCCACTAACTTATGGGATTTAAAAGGGTACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
25903 TGTGGGCTTTAGAAA-AATGCCACTAACTTGTGAGCTTTTG-AAGAGATGCAACTAACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTGACT
* * * * * *
25960 TGTCGGCTTTCAAATGATGCTACTAACTTGTAGGCTTTGAAAAGG-TGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG-AAAGGATGCCACTGACT
* * *
26016 TGTGGGCTTTGAAAGGATGCTACTAACTTGTAGGCTTTGAAAAGG-TGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG-AAAGGATGCCACTGACT
*
26072 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTGACT
* *
26129 TGTGAGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
26185 TATGGGCATTGAAAAGG-TACCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *** *
26241 TGTGGGCTTTAAAAGGATACCACTAACTTGTGGGCTTTGAAAGGGTATTACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
26297 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
26353 TGTGGGCTTTGAAAAGTTGCCAGT-ACTTGTGGGCTTTTAAAGAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAG-GATGCCACTGACT
* *
26409 TGTGGTCTTTTG-AAGAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * * * *
26466 TGTAGGCTTT-AAAGGGTGTCACTGACCTGTGGGTTTTAAAAAGATGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
26521 TGTGGGTTTTTAAAGAGATGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * *
26578 TATGGTCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGTCACTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
26634 TGTGGGCTTTGAAAAGATGCCAATAACTTGTGGGCTTTGAAAGGATGCCACTAACC
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
26690 TGTGGTCTTTTG-AAGAGATGCCACTGACTTGTGGTCTTTTG-AAGAGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTGACT
* * * * * * * * * *
26748 TGTGTGTTTTGAAAAGATGTCACTAACTTATGGGTTTTGAAAGGGTGCCACTCATT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
26804 TATGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAGGATGCCACTGACT
** * ** * * *
26861 TGTTTGCTTTGAAAAGATGTGACTAACCTGTGGGCTTTGAAAGGATACCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * *
26917 TGTGAGTTTTGAAAGGATGCCACTAACTTGTGGGCTTTAAAAGGGTACCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
26973 TGTGGGCATTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
27029 TGTGGGCTTTGATAA-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGA-AAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
27085 TAG-GGTCTTTTG-AAGAGATGCCACTAACTTGTGTGATTTGAAAGGATGCCACTAACT
1 T-GTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
27142 TGTGGGCTTTAAAAAGG-TGCCGCTGACTTGTGGGCTTTGAAATGATGCCACTGACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
*
27198 TGTGGGCTTTTG-AAGAGATGCCATTGACTTGTGGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTGACT
* * * *
27256 TGTGGGCTTTGAAAGGATGCCACTGACTTGTAGGCTTGGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
27312 TGTGGTCTTCGAAAAGATGCCACTGACTTGTGGGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* *
27368 TGTGGGCTTTGAAA-GAGTGCTACTGACTTGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* *
27424 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
27480 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGAAGCGATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * *
27536 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTAAAAGGGTACCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
27592 TGTGGGCTTTGGAAA-AATGCCACTAACTTGTGAGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTGACT
* * *
27649 TGTGGGCTTTGAAAAGATGCTACTGACTTGTGGGCTTTGAAAAGGTGCTACTGACATGCCACTAA
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG-AAA---G-----G--ATGCCACTGA
27714 CT
55 CT
* *
27716 TGTGGGCTTTGAAA-GAGTGCCACTGACTTGTGGGCTTTGAAAGGACGCCACTGATT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
27772 TGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGATGCTACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* *
27828 TGTGGGCTTTGAAAGGGTGCTACTGACATGCCACTAACTTGTGGGCTTTGAAA-GAGCGCCACTG
1 TGTGGGCTTTGAAA----G-----G--ATGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTG
27892 ACT
54 ACT
* * *
27895 TGTGGGCTTTGAAAAGATGTCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
27951 TGTAGGCTTT-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGATTCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
28006 TGTGGGTTTTTG-AAGAGATGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGG-CTTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * * *
28063 TGTGGGCTTTGAAAGGGTGCCACTGACTTTTGGGGTTTGAAAAGAAGCCATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
28119 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTAAAAGGGTACCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
28175 TGTGAGCTTTGGAAA-AATGCCACTAACTTGTGAGCTTTTG-AAGATATGCCACTGACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTGACT
*
28232 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCTACTGACATGCCACTAA
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAA----G-----G--ATGCCACTGA
28297 CT
55 CT
* *
28299 TGTGGGCTTTGAAA-GAGTGCCACTGACTTGTGGGCTTTGAAAAGATGTCACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
28355 TGTGGGCTTTGAAAGGATGCCACTAACTTGTAGGCTTT-AAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
28410 TGTGGGCTTTGAAAAGATGCCATTGACTTGTGGGTTTTTG-AAGAGATGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGG-CTTTGAAAG-GATGCCACTGACT
* *
28467 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
28523 TGTGGGCTTTGAAAAGAAGCCATTAACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * *
28579 TGTGGGCTTTAAAAGGGTACCATTGACTTGTGGGCTTTGGAAA-AATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTT-GAAAGGATGCCACTGACT
* *
28635 TGTGAGCTTTTG-AAGAGATACCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
*
28692 TGTGGGCTTTGAAAGGGTGCTACTAACATGCCACTAACTTGTGGGCTTTGAAA-GAGTGCCACTG
1 TGTGGGCTTTGAAA--G-G--------ATGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTG
28756 ACT
54 ACT
* * * *
28759 TGTGGGCTTTGAAAGGACGCCACTGATTTGTGGGCTTTAAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTT-GAAAGGATGCCACTGACT
* *
28816 TGTGGGC-TTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
28871 TGTGAGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTGAAA-GATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
28926 TGTGGGTTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAA-GAGTGCTACTTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCAC-TGACT
*
28983 TGTGGGCTTTGAAA-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTGT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGAC--T
* * *
29040 TGAGGGCCTTTGAAAGGATGCCACTTACTTGTGGGCTTTGAAAGGGTAGCCACTGACT
1 TGTGGG-CTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGAT-GCCACTGACT
* *
29098 TGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
** *
29154 TGTGGGCTTTGAAAGGATGCCACCAACTTGTGGGCTTTGAAAGGGTG-CACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * **
29209 TTTGGTCTTTGAAAAGG-TGTCC-CTGACTTGTGGTC-TTGAAAGGATGCCTTTGACT
1 TGTGGGCTTTG-AAAGGATG-CCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * * * * *
29264 TGTGGTCTTTAAAAAGGGCTGCCACGGAGTTGTGGTCTTT-ATAAGGTTGCCACGGAGT
1 TGTGGGCTTT-GAAA-GGATGCCACTGACTTGTGGGCTTTGA-AAGGATGCCACTGACT
29322 TGTGG
1 TGTGG
29327 ACTTAAAAGG
Statistics
Matches: 4560, Mismatches: 642, Indels: 390
0.82 0.11 0.07
Matches are distributed among these distances:
54 13 0.00
55 402 0.09
56 2576 0.56
57 1047 0.23
58 234 0.05
59 33 0.01
60 45 0.01
61 2 0.00
63 1 0.00
64 1 0.00
65 3 0.00
66 11 0.00
67 192 0.04
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (56 bp):
TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
Found at i:24124 original size:84 final size:84
Alignment explanation
Indices: 23872--29256 Score: 5624
Period size: 84 Copynumber: 63.2 Consensus size: 84
23862 CACCGACTTG
* * * * * *
23872 TGTGGGCTTTGAAAGGGGATGCCACTGACTTATGGGCTTTGAAGGGGTACCACTGACTTGTAGGC
1 TGTGGGCTTTGAAA--GGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC
* *
23937 TTTAAAAGGGTGCCACTGACT
64 TTTGAAAGGATGCCACTGACT
* * * * * * *
23958 TATGGGCTTTGGAAGGGTGCCATTGATTTGTGTAGGCTTTGAAATGGTATGCCATTGACTTGTGG
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTG--GGCTTTGAAA-GG-ATGCCACTGACTTGTGG
* * *
24023 GCTTTGAAAGGGTGCCACTAACG
62 GCTTTGAAAGGATGCCACTGACT
* * * * *
24046 TGTGGGCTTTGAAAGGATGCCGCTGACTTGTGGGCTTTGAAAGAATGCCACTAACTTATGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
*
24111 TGAAAGGGTGCCACTGACT
66 TGAAAGGATGCCACTGACT
** * *
24130 TGTGGGCTTTGAAAATATGCCACTAACTTGTGGGCTTTAAAAGGATGCCACTGACTTGTGGTCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-T
24195 TTG-AAGAGATGCCACTGACT
65 TTGAAAG-GATGCCACTGACT
* * * *
24215 TGTGGTCTTTTG-AAGAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTAGGC
1 TGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC
*
24279 TTTGAAAATG-TGCCACTGACT
64 TTTG-AAAGGATGCCACTGACT
** * * *
24300 TGTGGGCTTTGAAAATATGCCACTGACTTGTAGGCTTTTG-AAGAGATGCCACTGACTTGTGAGC
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGC
* *
24364 TTTGAAAAGATGCCACTGATT
64 TTTGAAAGGATGCCACTGACT
* * * * *
24385 TATGGGCTTTGAAAGGATGCCACTAACTTATGGGCATTGAAAAGG-TGCCACTAACTTGTGGCCT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGCT
*
24449 TTGAAAAGATGCCACTGACT
65 TTGAAAGGATGCCACTGACT
* * * ** *
24469 TGTGGGCTTTAAAAGGATACCACTAACTTGT-GGCTTTGAAAGGGTGTTACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
* *
24533 TAAAAGGATGCCACTAACT
66 TGAAAGGATGCCACTGACT
* * * * * * *
24552 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGTTTTGAAAAGTTACCA-TTACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
* *
24616 TTAAAGAGATGCCACTAACT
66 TGAAAG-GATGCCACTGACT
* * * *
24636 TGTGGTCTTTCG-AAGAGATGTCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTAGG-
1 TGTGGGCTTT-GAAAG-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC
* *
24699 TTTTAAAGGGTGCCACTGACT
64 TTTGAAAGGATGCCACTGACT
* * * *
24720 TGTGGGCTTTGAAAAGATGCCATTGACTT-TTGGCTTTTTG-AAGAGATGCCA-TAGACTTGTGG
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC--TTTGAAAG-GATGCCACT-GACTTGTGG
*
24782 GCTTTGAAAGGATGCCACTCACT
62 GCTTTGAAAGGATGCCACTGACT
*
24805 TATGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGCG-TGCCACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAG-GATGCCACTGACTTGTGGGCT
* * *
24869 TTGAAAAGAAGCCACTAACT
65 TTGAAAGGATGCCACTGACT
* * *
24889 TGTGGGCTTTGAAAGGATGCCACTAACCTGTGGTCTTTTG-AAGAGATGCCACTGACTTGTGGTC
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGC
*
24953 TTTTG-AAGAGATGCCACTAACT
64 -TTTGAAAG-GATGCCACTGACT
* * * * * * * *
24975 TGTGGGTTTTGAAAAGATGTCACTAACTTGTGGGCTTTGAAAGGGTGCCATTCATTTATGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
*
25040 TGAAAAGATGCCACTGACT
66 TGAAAGGATGCCACTGACT
* ** * * * *
25059 TATGAGTTTTTG-AAGAGATGCCACTAACTTGTGGGCTTTGAAAAGTTGCCACTAACTTGTGCGC
1 TGTG-GGCTTTGAAAG-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC
* *
25123 TTTGTAATGA-GACCACTGACT
64 TTTGAAAGGATG-CCACTGACT
* * * * *
25144 TGTGAGTTTTGAAAGGATGCCACTAACTTGTGGGCTTCGAAAGGGTGTCACT-ATCTTGTGGGCT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGA-CTTGTGGGCT
*
25208 TTGAAAGGATGCCACTAACT
65 TTGAAAGGATGCCACTGACT
* * * * * *
25228 TGTGGGCTTTGAAAAGAAGGCATTAACTTATGGGCTTTGATAA-GATGCCACTGACTTGTGGGTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGA-AAGGATGCCACTGACTTGTGGGCT
*
25292 TTGAAAGGATACCACTGACT
65 TTGAAAGGATGCCACTGACT
* * * ** * *
25312 TATGGTCTTTTG-AAGAGATGCCACTGACTTGTGTTCTTTTG-AAGAGATGCCACTAACCTGTGG
1 TGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGG
* * *
25375 GTTTTGAAAGGATTCCACTAACT
62 GCTTTGAAAGGATGCCACTGACT
* * * * *
25398 TGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
**
25463 TGAAAATATGCCACTGACT
66 TGAAAGGATGCCACTGACT
* * * * *
25482 TATGGGCTTTTG-AAGAGATGCCACTGACTTGTAGGCTTTGAAAGGATGCCACTAACTTGTAGGC
1 TGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC
* *
25546 TTTGAAAGGGTGCCACTAACT
64 TTTGAAAGGATGCCACTGACT
* * * * * * *
25567 TGT-GGTTTTCGAAAAGATGCCATTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGTCT
1 TGTGGGCTTT-GAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
** *
25631 TCAAAAAGATGCCACTGACT
65 TTGAAAGGATGCCACTGACT
* * * *
25651 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTCATA-GAGTGCTACTAACTTGTGGGCT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCT
*
25715 TTGAAAAGATGCCACTGACT
65 TTGAAAGGATGCCACTGACT
* * *
25735 TATGGGCTTTGAAAGGATGCCACTAACTTGTGGACTTTGAAAGGATGCCACTTACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
* *
25800 TGAAAGGGTGCCACTTACT
66 TGAAAGGATGCCACTGACT
* * * * * * *
25819 TATGGGCTTTGAAAAGAAGCCATTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTATGGGATT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
* * * *
25884 TAAAAGGGTACCACTAACT
66 TGAAAGGATGCCACTGACT
* * * * *
25903 TGTGGGCTTTAGAAA-AATGCCACTAACTTGTGAGCTTTTG-AAGAGATGCAACTAACTTGTCGG
1 TGTGGGCTTT-GAAAGGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGG
* * * *
25966 CTTTCAAATGATGCTACTAACT
63 CTTTGAAAGGATGCCACTGACT
* * * * *
25988 TGTAGGCTTTGAAAAGG-TGCCACTGACTTGTGGGCTTTGAAAGGATGCTACTAACTTGTAGGCT
1 TGTGGGCTTTG-AAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
26052 TTGAAAAGG-TGCCACTGACT
65 TTG-AAAGGATGCCACTGACT
*
26072 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTTG-AAGAGATGCCACTGACTTGTGAGC
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGC
26136 TTTGAAAGGATGCCACTGACT
64 TTTGAAAGGATGCCACTGACT
* * *
26157 TGTGGGCTTTGAAAGGATGCCACTAACTTATGGGCATTGAAAAGG-TACCACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGCT
26221 TTGAAAGGATGCCACTGACT
65 TTGAAAGGATGCCACTGACT
* * * *** *
26241 TGTGGGCTTTAAAAGGATACCACTAACTTGTGGGCTTTGAAAGGGTATTACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
* *
26306 TAAAAGGATGCCACTAACT
66 TGAAAGGATGCCACTGACT
* * * *
26325 TGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAAGTTGCCAGT-ACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
* *
26389 TTAAAGAGATGCCACTAACT
66 TGAAAG-GATGCCACTGACT
* * * *
26409 TGTGGTCTTTTG-AAGAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTAGGC
1 TGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC
* * *
26473 TTT-AAAGGGTGTCACTGACC
64 TTTGAAAGGATGCCACTGACT
* * * * * * * *
26493 TGTGGGTTTTAAAAAGATGCCATTGACTTGTGGGTTTTTAAAGAGATGCCATTGACTTGTGGGCT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAG-GATGCCACTGACTTGTGGGCT
26558 TTGAAAGGATGCCACTGACT
65 TTGAAAGGATGCCACTGACT
* * * * *
26578 TATGGTCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGTCACTGATTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
* * *
26643 TGAAAAGATGCCAATAACT
66 TGAAAGGATGCCACTGACT
* * *
26662 TGTGGGCTTTGAAAGGATGCCACTAACCTGTGGTCTTTTG-AAGAGATGCCACTGACTTGTGGTC
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGC
*
26726 TTTTG-AAGAGATGCCACTAACT
64 -TTTGAAAG-GATGCCACTGACT
* * * * * * * * * *
26748 TGTGTGTTTTGAAAAGATGTCACTAACTTATGGGTTTTGAAAGGGTGCCACTCATTTATGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
*
26813 TGAAAAGATGCCACTGACT
66 TGAAAGGATGCCACTGACT
* * ** * ** * *
26832 TGTGGGCTTTTGAAAAGATGCCACTGACTTGTTTGCTTTGAAAAGATGTGACTAACCTGTGGGCT
1 TGTGGGC-TTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
*
26897 TTGAAAGGATACCACTGACT
65 TTGAAAGGATGCCACTGACT
* * * * * *
26917 TGTGAGTTTTGAAAGGATGCCACTAACTTGTGGGCTTTAAAAGGGTACCACTGACTTGTGGGCAT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
*
26982 TGAAAGGATGCCACTAACT
66 TGAAAGGATGCCACTGACT
* *
27001 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGATAA-GATGCCACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGA-AAGGATGCCACTGACTTGTGGGCT
27065 TTGAAAGGATGCCACTGACT
65 TTGAAAGGATGCCACTGACT
* * * *
27085 TAG-GGTCTTTTG-AAGAGATGCCACTAACTTGTGTGATTTGAAAGGATGCCACTAACTTGTGGG
1 T-GTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGG
* *
27148 CTTTAAAAAGG-TGCCGCTGACT
63 CTTT-GAAAGGATGCCACTGACT
* * *
27170 TGTGGGCTTTGAAATGATGCCACTGACTTGTGGGCTTTTG-AAGAGATGCCATTGACTTGTGGGC
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGC
27234 TTTTG-AAGAGATGCCACTGACT
64 -TTTGAAAG-GATGCCACTGACT
* * * * * *
27256 TGTGGGCTTTGAAAGGATGCCACTGACTTGTAGGCTTGGAAAGGGTGCCACTAACTTGTGGTCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
* *
27321 CGAAAAGATGCCACTGACT
66 TGAAAGGATGCCACTGACT
* *
27340 TGTGGGTTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAA-GAGTGCTACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCT
*
27404 TTGAAAAGATGCCACTGACT
65 TTGAAAGGATGCCACTGACT
*
27424 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTTACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
*
27489 TGAAAGGGTGCCACTGACT
66 TGAAAGGATGCCACTGACT
* * * * *
27508 TGTGGGCTTTGAAAGGAAGCGATTAACTTGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
* * * *
27573 TAAAAGGGTACCATTGACT
66 TGAAAGGATGCCACTGACT
* *
27592 TGTGGGCTTTGGAAA-AATGCCACTAACTTGTGAGCTTTTG-AAGAGATGCCACTGACTTGTGGG
1 TGTGGGCTTT-GAAAGGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGG
* *
27655 CTTTGAAAAGATGCTACTGACT
63 CTTTGAAAGGATGCCACTGACT
27677 TGTGGGCTTTGAAAAGGTGCTACTGACATGCCACTAACTTGTGGGCTTTGAAA-GAGTGCCACTG
1 TGTGGGCTTTG-AAA---G-----G--ATGCCACTAACTTGTGGGCTTTGAAAGGA-TGCCACTG
* *
27741 ACTTGTGGGCTTTGAAAGGACGCCACTGATT
54 ACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
27772 TGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGATGCTACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
*
27837 TGAAAGGGTGCTACTGACATGCCACTAACT
66 TGAAA----G-----G--ATGCCACTGACT
* * * *
27867 TGTGGGCTTTGAAA-GAGCGCCACTGACTTGTGGGCTTTGAAAAGATGTCACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAGGA-TGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
*
27931 TTGAAAGGATGCCACTAACT
65 TTGAAAGGATGCCACTGACT
* * * * * * *
27951 TGTAGGCTTT-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGATTCCATTGACTTGTGGGTTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGG-CT
*
28015 TTG-AAGAGATGCCATTGACT
65 TTGAAAG-GATGCCACTGACT
* * *
28035 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTTTGGGGTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
* * * *
28100 TGAAAAGAAGCCATTAACT
66 TGAAAGGATGCCACTGACT
* * * * *
28119 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTAAAAGGGTACCATTGACTTGTGAGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
* *
28184 TGGAAA-AATGCCACTAACT
66 T-GAAAGGATGCCACTGACT
* * *
28203 TGTGAGCTTTTG-AAGATATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC
1 TGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC
*
28267 TTTGAAAGGGTGCTACTGACATGCCACTAACT
64 TTTGAAA----G-----G--ATGCCACTGACT
* * *
28299 TGTGGGCTTTGAAA-GAGTGCCACTGACTTGTGGGCTTTGAAAAGATGTCACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAGGA-TGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
*
28363 TTGAAAGGATGCCACTAACT
65 TTGAAAGGATGCCACTGACT
* * * * * *
28383 TGTAGGCTTT-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGATGCCATTGACTTGTGGGTTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGG-CT
*
28447 TTG-AAGAGATGCCATTGACT
65 TTGAAAG-GATGCCACTGACT
*
28467 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
* * * *
28532 TGAAAAGAAGCCATTAACT
66 TGAAAGGATGCCACTGACT
* * * *
28551 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTAAAAGGGTACCATTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
* *
28616 TGGAAA-AATGCCACTAACT
66 T-GAAAGGATGCCACTGACT
* * *
28635 TGTGAGCTTTTG-AAGAGATACCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC
1 TGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC
*
28699 TTTGAAAGGGTGCTACTAACATGCCACTAACT
64 TTTGAAA--G-G--------ATGCCACTGACT
* * *
28731 TGTGGGCTTTGAAA-GAGTGCCACTGACTTGTGGGCTTTGAAAGGACGCCACTGATTTGTGGGCT
1 TGTGGGCTTTGAAAGGA-TGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
* *
28795 TTAAAAAGGGTGCCACTGACT
65 TT-GAAAGGATGCCACTGACT
* * * *
28816 TGTGGGC-TTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGAGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
* *
28880 TAAAAGGGTGCCACTGACT
66 TGAAAGGATGCCACTGACT
* * *
28899 TGTGGGCTTTGAAA-GATGCCACTGACTTGTGGGTTTTGAAAGGATGCCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
*
28963 TGAAA-GAGTGCTACTTGACT
66 TGAAAGGA-TGCCAC-TGACT
* * *
28983 TGTGGGCTTTGAAA-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTGTTGAGGGC
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGAC--TTGTGGG-
*
29047 CTTTGAAAGGATGCCACTTACT
63 CTTTGAAAGGATGCCACTGACT
* * *
29069 TGTGGGCTTTGAAAGGGTAGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAGGAT-GCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
*
29134 TTGAAAGGATGCCACTGATT
65 TTGAAAGGATGCCACTGACT
* * * *
29154 TGTGGGCTTTGAAAGGATGCCACCAACTTGTGGGCTTTGAAAGGGTG-CACTGACTTTTGGTCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
29218 TGAAAAGG-TGTCC-CTGACT
66 TG-AAAGGATG-CCACTGACT
*
29237 TGTGGTC-TTGAAAGGATGCC
1 TGTGGGCTTTGAAAGGATGCC
29257 TTTGACTTGT
Statistics
Matches: 4497, Mismatches: 611, Indels: 386
0.82 0.11 0.07
Matches are distributed among these distances:
82 23 0.01
83 369 0.08
84 2152 0.48
85 1193 0.27
86 340 0.08
87 19 0.00
88 97 0.02
91 3 0.00
93 2 0.00
94 10 0.00
95 226 0.05
96 63 0.01
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (84 bp):
TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
TGAAAGGATGCCACTGACT
Found at i:27728 original size:39 final size:39
Alignment explanation
Indices: 27665--27742 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 39
27655 CTTTGAAAAG
* * *
27665 ATGCTACTGACTTGTGGGCTTTGAAA-AGGTGCTACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGA-GTGCCACTGAC
27704 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
27743 TTGTGGGCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
39 34 0.97
40 1 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
Found at i:27892 original size:39 final size:39
Alignment explanation
Indices: 27816--27893 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 39
27806 CTTTGAAAAG
* * * * *
27816 ATGCTACTGACTTGTGGGCTTTGAAAGGGTGCTACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGCGCCACTGAC
27855 ATGCCACTAACTTGTGGGCTTTGAAAGAGCGCCACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGCGCCACTGAC
27894 TTGTGGGCTT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
ATGCCACTAACTTGTGGGCTTTGAAAGAGCGCCACTGAC
Found at i:28302 original size:39 final size:39
Alignment explanation
Indices: 28248--28325 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
28238 CTTTGAAAGG
* * *
28248 ATGCCACTGACTTGTGGGCTTTGAAAGGGTGCTACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
28287 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
28326 TTGTGGGCTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
Found at i:28328 original size:28 final size:29
Alignment explanation
Indices: 28287--29273 Score: 1007
Period size: 28 Copynumber: 34.8 Consensus size: 29
28277 TGCTACTGAC
*
28287 ATGCCACTAACTTGTGGGCTTTGAAAGAG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
28316 -TGCCACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
28343 ATGTCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
28371 ATGCCACTAACTTGTAGGCTTT-AAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
28398 GTGCCACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
28426 ATGCCATTGACTTGTGGGTTTTTG-AAGAG
1 ATGCCACTGACTTGTGGG-CTTTGAAAGAG
*
28455 ATGCCATTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
28483 ATGCCACTAACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
28511 GTGCCACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
28539 AAGCCATTAACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
28567 ATGCCACTAACTTGTGGGCTTTAAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
28595 GTACCATTGACTTGTGGGCTTTGGAAA-A-
1 ATGCCACTGACTTGTGGGCTTT-GAAAGAG
* *
28623 ATGCCACTAACTTGTGAGCTTTTG-AAGAG
1 ATGCCACTGACTTGTGGGC-TTTGAAAGAG
*
28652 ATACCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
28680 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* ** **
28708 GTGCTACTAACATGCCACTAACT-TGTGGGCTTTGAA-AG
1 ATGC--C--AC-TG--ACT---TGTG-GGCTTTGAAAGAG
28746 AGTGCCACTGACTTGTGGGCTTTGAAAG-G
1 A-TGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
28775 ACGCCACTGATTTGTGGGCTTT-AAAAAGG
1 ATGCCACTGACTTGTGGGCTTTGAAAGA-G
*
28804 GTGCCACTGACTTGTGGGC-TTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
28831 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
28859 ATGCCACTAACTTGTGAGCTTTAAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
28887 GTGCCACTGACTTGTGGGCTTTG-AA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
28914 ATGCCACTGACTTGTGGGTTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
28942 ATGCCACTAACTTGTGGGCTTTGAAAGAG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
28971 -TGCTACTTGACTTGTGGGCTTTG-AA-AG
1 ATGCCAC-TGACTTGTGGGCTTTGAAAGAG
28998 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
29026 ATGCCACTAACTGTTGAGGGCCTTTGAAAG-G
1 ATGCCACTGAC--TTGTGGG-CTTTGAAAGAG
*
29057 ATGCCACTTACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
29085 GTAGCCACTGACTTGTGGGCTTTGAAA-AG
1 AT-GCCACTGACTTGTGGGCTTTGAAAGAG
29114 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
29142 ATGCCACTGATTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
**
29170 ATGCCACCAACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
29198 GTG-CACTGACTTTTGGTCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
29225 GTGTCC-CTGACTTGTGGTC-TTGAAAG-G
1 ATG-CCACTGACTTGTGGGCTTTGAAAGAG
** *
29252 ATGCCTTTGACTTGTGGTCTTT
1 ATGCCACTGACTTGTGGGCTTT
29274 AAAAAGGGCT
Statistics
Matches: 816, Mismatches: 87, Indels: 111
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.00
27 135 0.17
28 493 0.60
29 129 0.16
30 9 0.01
31 20 0.02
32 5 0.01
33 2 0.00
34 2 0.00
35 5 0.01
37 3 0.00
38 8 0.01
39 3 0.00
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.30
Consensus pattern (29 bp):
ATGCCACTGACTTGTGGGCTTTGAAAGAG
Found at i:28352 original size:67 final size:67
Alignment explanation
Indices: 28220--28353 Score: 209
Period size: 67 Copynumber: 2.0 Consensus size: 67
28210 TTTTGAAGAT
* * *
28220 ATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCTACTG
1 ATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCTACTG
28285 AC
66 AC
28287 ATGCCACTAACTTGTGGGCTTTGAAA-GAGTGCCACTGACTTGTGGGCTTTGAAAAGATG-TCAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAAGATGCT-AC
28350 TGAC
64 TGAC
28354 TTGTGGGCTT
Statistics
Matches: 62, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
66 3 0.05
67 59 0.95
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.28
Consensus pattern (67 bp):
ATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCTACTG
AC
Found at i:29322 original size:28 final size:28
Alignment explanation
Indices: 28730--29365 Score: 128
Period size: 28 Copynumber: 22.6 Consensus size: 28
28720 TGCCACTAAC
* * * *
28730 TTGTGGGCTTTGAAAGAG-TGCCACTGAC
1 TTGTGGTCTTTAAAAG-GTTGCCACGGAG
* * ** * *
28758 TTGTGGGCTTTGAAAGGACGCCACTGAT
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * * *
28786 TTGTGGGCTTTAAAAAGGGTGCCACTGAC
1 TTGTGGTCTTT-AAAAGGTTGCCACGGAG
* * * * *
28815 TTGTGGGCTTGAAAA-GATGCCACTGAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * * ** *
28842 TTGTGGGCTTTGAAAGGATGCCACTAAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * *
28870 TTGTGAG-CTTTAAAAGGGTGCCACTGAC
1 TTGTG-GTCTTTAAAAGGTTGCCACGGAG
* * * * *
28898 TTGTGGGCTTTGAAA-GATGCCACTGAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * ** *
28925 TTGTGGGT-TTTGAAAGGATGCCACTAAC
1 TTGT-GGTCTTTAAAAGGTTGCCACGGAG
* * * * *
28953 TTGTGGGCTTTGAAAGAG-TGCTACTTGAC
1 TTGTGGTCTTTAAAAG-GTTGCCAC-GGAG
* * * * *
28982 TTGTGGGCTTTGAAA-GATGCCACTGAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * * **
29009 TTGTGGGCTTTGAAAGGATGCCACTAACTG
1 TTGTGGTCTTTAAAAGGTTGCCACGGA--G
* * * * ** *
29039 TTGAGGGCCTTTGAAAGGATGCCACTTAC
1 TTG-TGGTCTTTAAAAGGTTGCCACGGAG
* * * * *
29068 TTGTGGGCTTTGAAAGGGTAGCCACTGAC
1 TTGTGGTCTTT-AAAAGGTTGCCACGGAG
* * * *
29097 TTGTGGGCTTTGAAAA-GATGCCACTGAC
1 TTGTGGTCTTT-AAAAGGTTGCCACGGAG
* * * * *
29125 TTGTGGGCTTTGAAAGGATGCCACTGAT
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * * ** *
29153 TTGTGGGCTTTGAAAGGATGCCACCAAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * * * *
29181 TTGTGGGCTTTGAAAGGGTG-CACTGAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * *
29208 TTTTGGTCTTTGAAAAGG-TGTCC-CTGAC
1 TTGTGGTCTTT-AAAAGGTTG-CCACGGAG
* * *** *
29236 TTGTGGTC-TTGAAAGGATGCCTTTGAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
*
29263 TTGTGGTCTTTAAAAAGGGCTGCCACGGAG
1 TTGTGGTCTTT-AAAA-GGTTGCCACGGAG
*
29293 TTGTGGTCTTTATAAGGTTGCCACGGAG
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* *
29321 TTGTGGAC-TTAAAAGGTTGCCATTGGAG
1 TTGTGGTCTTTAAAAGGTTGCCA-CGGAG
* * *
29349 TTATGGACTTAAAAAGG
1 TTGTGGTCTTTAAAAGG
29366 AATGCAACTA
Statistics
Matches: 516, Mismatches: 65, Indels: 53
0.81 0.10 0.08
Matches are distributed among these distances:
26 7 0.01
27 118 0.23
28 261 0.51
29 87 0.17
30 22 0.04
31 21 0.04
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
TTGTGGTCTTTAAAAGGTTGCCACGGAG
Found at i:40790 original size:27 final size:27
Alignment explanation
Indices: 40756--40820 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
40746 GCCACCCATT
*
40756 TGTTTGTCAAAAATGGTGGTTAT-TTTG
1 TGTTTGTCAAAAATGGTGGTT-TCCTTG
40783 TGTTTGTCAAAAATGGTGGTTTCCTTG
1 TGTTTGTCAAAAATGGTGGTTTCCTTG
*
40810 TATTTGTCAAA
1 TGTTTGTCAAA
40821 TATGAAGGCT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 1 0.03
27 34 0.97
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (27 bp):
TGTTTGTCAAAAATGGTGGTTTCCTTG
Found at i:45358 original size:24 final size:26
Alignment explanation
Indices: 45334--45455 Score: 74
Period size: 27 Copynumber: 4.7 Consensus size: 26
45324 GCCACCCATT
* *
45334 TGTTTGTTAAAAATGTTGGTTATTTTG
1 TGTTTGTCAAAAATGGTGGTTA-TTTG
45361 TGTTTGTCAAAAATGGTGGTT-TCCTTG
1 TGTTTGTCAAAAATGGTGGTTAT--TTG
* * * *
45388 TATTTGTCAAATATGGAGGCTT-GTT-
1 TGTTTGTCAAAAATGGTGG-TTATTTG
* * * *
45413 TATTTGTCAAAATTGGTGGCT-TGT-
1 TGTTTGTCAAAAATGGTGGTTATTTG
*
45437 TGTTTGTCAAAATTGGTGG
1 TGTTTGTCAAAAATGGTGG
45456 CTAATTTTTA
Statistics
Matches: 79, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
24 20 0.25
25 17 0.22
26 2 0.03
27 38 0.48
28 2 0.03
ACGTcount: A:0.21, C:0.07, G:0.25, T:0.47
Consensus pattern (26 bp):
TGTTTGTCAAAAATGGTGGTTATTTG
Found at i:45388 original size:27 final size:27
Alignment explanation
Indices: 45334--45403 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
45324 GCCACCCATT
* * *
45334 TGTTTGTTAAAAATGTTGGTTATTTTG
1 TGTTTGTCAAAAATGGTGGTTATCTTG
45361 TGTTTGTCAAAAATGGTGGTT-TCCTTG
1 TGTTTGTCAAAAATGGTGGTTAT-CTTG
* *
45388 TATTTGTCAAATATGG
1 TGTTTGTCAAAAATGG
45404 AGGCTTGTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 1 0.03
27 36 0.97
ACGTcount: A:0.23, C:0.06, G:0.23, T:0.49
Consensus pattern (27 bp):
TGTTTGTCAAAAATGGTGGTTATCTTG
Found at i:45456 original size:24 final size:24
Alignment explanation
Indices: 45361--45457 Score: 97
Period size: 24 Copynumber: 3.9 Consensus size: 24
45351 GGTTATTTTG
* * *
45361 TGTTTGTCAAAAATGGTGGTTTCCT
1 TGTTTGTCAAAATTGGTGGCTT-GT
*
45386 TGTATTTGTC-AAATATGGAGGCTTGTT
1 TG--TTTGTCAAAAT-TGGTGGCTTG-T
*
45413 TATTTGTCAAAATTGGTGGCTTGT
1 TGTTTGTCAAAATTGGTGGCTTGT
45437 TGTTTGTCAAAATTGGTGGCT
1 TGTTTGTCAAAATTGGTGGCT
45458 AATTTTTATT
Statistics
Matches: 60, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
24 21 0.35
25 17 0.28
26 7 0.12
27 15 0.25
ACGTcount: A:0.21, C:0.09, G:0.26, T:0.44
Consensus pattern (24 bp):
TGTTTGTCAAAATTGGTGGCTTGT
Found at i:47149 original size:15 final size:15
Alignment explanation
Indices: 47129--47159 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
47119 AATAATTTGT
47129 ACACAATCTTACTTG
1 ACACAATCTTACTTG
47144 ACACAATCTTACTTG
1 ACACAATCTTACTTG
47159 A
1 A
47160 TTTGACAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.26, G:0.06, T:0.32
Consensus pattern (15 bp):
ACACAATCTTACTTG
Done.