genome.fa.s2044.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2044
Parameters: 2 7 7 80 10 50 1000
Length:  81672

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3233--3433	52	3.9	52	93	3	334	29	17	19	33	1.95
3422--3446	13	1.9	13	100	0	50	36	16	16	32	1.90
3510--3534	13	1.9	13	100	0	50	32	16	16	36	1.90
3592--3633	21	2.0	21	90	0	66	35	14	14	35	1.86
6109--6176	34	2.0	34	88	0	100	57	5	11	25	1.56
6956--7114	20	7.8	20	78	6	153	30	20	12	36	1.90
6955--7112	41	3.9	40	86	8	196	31	20	13	35	1.91
9415--9485	27	2.6	27	88	0	106	25	36	16	21	1.94
15583--15854	27	10.0	27	85	5	307	23	31	17	26	1.97
15583--15854	82	3.3	81	85	4	332	23	31	17	26	1.97
15750--16595	28	30.2	28	79	6	690	27	31	17	22	1.97
15574--16595	56	18.3	56	78	8	736	27	31	17	23	1.97
15579--16595	84	12.2	84	78	7	713	27	31	17	23	1.97
20381--20516	51	2.7	51	94	0	236	41	11	19	27	1.85
20480--20556	20	3.8	20	84	6	102	40	12	16	29	1.86
21214--21368	21	7.7	19	75	19	127	33	19	12	34	1.89
21214--21369	41	3.8	41	92	0	242	33	19	12	35	1.89
21214--21458	20	11.7	20	71	12	152	32	18	11	36	1.88
23724--23792	27	2.6	27	88	0	111	23	39	17	20	1.92
25587--25643	3	19.7	3	82	13	75	64	0	1	33	1.04
25587--25643	28	2.1	27	87	9	80	64	0	1	33	1.04
31260--31529	79	3.4	76	77	8	281	27	25	12	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31466--31582	51	2.3	51	83	0	153	27	29	11	31	1.92
31390--31789	130	3.1	129	84	2	496	27	26	12	34	1.92
31648--31984	158	2.1	158	84	5	423	27	23	12	36	1.91
31646--31984	79	4.3	79	77	5	328	27	23	13	36	1.92
32215--32263	23	2.2	22	81	3	53	14	2	16	67	1.33
33689--33742	22	2.6	21	77	16	58	50	9	1	38	1.45
34049--34083	18	1.9	18	88	11	54	37	2	8	51	1.47
35666--35753	45	2.0	45	93	0	149	27	18	12	42	1.86
36219--36340	61	2.0	61	100	0	244	36	8	13	42	1.74
38256--38300	2	22.5	2	95	0	81	2	46	0	51	1.13
40582--40628	17	2.8	16	83	9	58	68	0	0	31	0.90
48119--48182	33	1.9	33	83	0	83	35	10	10	42	1.75
48709--48766	21	2.7	21	74	15	55	34	17	17	31	1.93
48615--48854	114	2.1	113	82	3	277	32	16	19	32	1.94
49294--49341	11	4.6	10	79	7	51	75	0	25	0	0.81
51217--51425	100	2.0	103	80	7	228	32	19	9	38	1.84
51371--51528	80	2.0	80	85	7	214	32	22	3	40	1.72
52147--52273	52	2.4	52	93	0	218	37	19	16	26	1.93
61186--61482	150	2.0	150	95	0	540	38	17	14	29	1.90
63243--63315	20	3.7	19	72	18	60	36	16	15	31	1.90
65108--65158	26	2.0	26	100	0	102	41	15	19	23	1.90
66879--66904	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66856--66924	33	2.1	33	91	0	111	33	14	15	36	1.89
66976--67030	20	2.8	20	88	5	76	30	14	14	40	1.86
69466--69504	13	3.0	13	92	0	60	35	12	17	33	1.88
75725--75779	20	2.8	20	88	5	76	30	14	14	40	1.86
76905--76954	4	11.5	4	80	16	55	52	0	2	46	1.12
76901--76938	9	4.3	9	84	15	53	57	0	0	42	0.98
76901--76954	13	4.2	13	77	15	58	53	0	1	44	1.11
77613--77652	21	2.0	21	85	5	55	57	2	5	35	1.34
78433--78458	13	2.0	13	100	0	52	69	7	0	23	1.14
78703--78733	16	1.9	16	100	0	62	45	32	12	9	1.75
78689--78772	16	5.2	16	72	11	55	42	27	11	17	1.84
80977--81021	20	2.2	20	84	4	54	44	2	2	51	1.26

Tables:   1

The End!