genome.fa.s2045.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2045
Parameters: 2 7 7 80 10 50 1000
Length:  191657

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3949--4047	25	3.8	25	76	17	76	46	24	7	22	1.76
3951--4047	28	3.6	27	82	8	110	46	24	6	22	1.75
3979--4049	27	2.6	28	90	2	108	47	23	5	22	1.72
8545--8573	15	1.9	15	100	0	58	34	0	17	48	1.47
14862--14972	57	1.9	57	94	0	195	27	11	18	42	1.85
17325--17370	24	1.9	24	90	0	74	43	28	6	21	1.77
17351--17428	28	2.9	28	86	7	99	48	23	6	21	1.73
17375--17429	28	2.0	28	100	0	110	49	21	10	18	1.78
21932--21977	24	1.9	24	86	0	65	43	26	6	23	1.78
25671--25711	20	2.2	18	86	8	55	78	2	12	7	1.06
26564--26607	2	22.0	2	100	0	88	50	0	0	50	1.00
28969--29011	14	3.1	14	86	0	59	32	4	0	62	1.15
28972--29010	19	2.1	19	85	9	53	33	5	0	61	1.18
28946--28997	26	2.0	25	82	17	63	32	7	1	57	1.38
37088--37160	22	3.2	22	66	27	62	35	17	15	31	1.91
37089--37180	46	2.0	46	100	0	184	34	19	13	32	1.90
41430--41487	12	4.7	12	76	19	57	25	3	1	68	1.14
45184--45209	8	3.2	8	100	0	52	88	0	0	11	0.52
46646--46694	22	2.3	22	82	10	57	32	0	4	63	1.13
46665--46745	11	6.3	13	73	22	64	28	2	2	66	1.17
51229--51326	24	3.8	25	79	12	101	44	24	9	21	1.81
51231--51351	25	4.6	27	83	9	101	45	24	6	23	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55823--55945	27	4.8	25	80	12	106	45	24	8	21	1.79
55825--55945	25	4.7	26	84	9	122	45	24	7	22	1.78
55825--55950	24	4.9	24	77	12	92	46	24	7	22	1.77
63086--63134	2	24.5	2	100	0	98	48	0	0	51	1.00
63301--63488	93	2.0	93	95	0	340	19	24	18	37	1.94
68149--68195	20	2.3	20	85	0	58	31	4	51	12	1.59
68243--68345	27	3.9	27	77	3	95	45	21	10	22	1.82
72813--72882	24	2.8	25	82	10	81	45	21	10	22	1.81
72844--72917	27	2.7	27	82	0	94	45	14	12	27	1.80
73216--73296	21	3.7	23	73	18	73	30	2	1	65	1.13
73225--73274	13	4.1	13	75	15	52	30	4	0	66	1.10
73230--73304	37	2.0	39	85	15	104	30	5	0	64	1.16
77364--77434	27	2.6	27	86	6	90	23	7	22	46	1.76
81937--82007	27	2.6	27	88	6	99	22	7	23	46	1.76
82084--82129	20	2.3	20	88	0	65	10	50	4	34	1.57
90843--90875	14	2.4	14	94	0	57	27	9	0	63	1.24
92365--92401	17	2.2	16	86	9	56	32	27	8	32	1.86
92370--92403	17	2.0	17	100	0	68	29	29	5	35	1.81
94475--94522	10	4.5	11	79	10	55	27	4	0	68	1.07
94470--94528	21	2.7	21	82	15	75	28	3	0	67	1.06
94470--94535	13	5.6	12	78	18	68	28	3	0	68	1.05
94770--94821	18	3.2	16	82	15	54	63	0	5	30	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95010--95039	2	15.0	2	92	0	51	50	3	0	46	1.18
95041--95101	31	2.0	31	81	6	72	49	3	13	34	1.58
98002--98080	39	2.0	39	100	0	158	49	7	7	35	1.60
98966--99181	34	6.4	34	88	1	292	24	7	27	40	1.83
98966--99183	67	3.2	67	88	1	319	24	7	27	40	1.82
99486--99549	19	3.3	20	89	4	87	29	17	18	34	1.94
103615--103832	34	6.5	34	88	1	296	24	7	27	40	1.82
103615--103834	67	3.3	67	88	1	323	24	7	27	40	1.82
106536--106569	12	2.8	13	82	17	54	35	0	0	64	0.94
110422--110454	17	1.9	17	88	11	50	39	0	0	60	0.97
114385--114465	28	2.9	27	75	12	83	46	20	6	25	1.74
114509--114589	28	2.9	27	78	12	92	46	20	7	24	1.76
114348--114595	124	2.0	124	99	0	487	45	22	8	22	1.79
114519--114587	27	2.5	27	86	6	86	46	21	7	24	1.77
115872--115996	27	4.9	24	74	13	97	20	6	25	47	1.74
115876--115996	25	4.6	27	81	9	92	21	6	25	46	1.75
115929--115998	24	2.8	25	87	6	90	21	7	25	45	1.77
122774--122814	2	20.5	2	94	0	73	51	46	0	2	1.14
125189--125216	2	14.0	2	100	0	56	50	0	0	50	1.00
126978--127044	27	2.5	26	73	9	64	47	0	0	52	1.00
128972--129010	13	3.0	13	82	14	53	28	2	0	69	1.02
129485--129509	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134070--134127	1	58.0	1	85	0	71	91	3	5	0	0.51
134068--134125	29	2.0	29	96	0	107	87	3	8	0	0.64
134068--134129	30	2.1	30	90	6	99	85	3	11	0	0.71
142652--142709	1	58.0	1	85	0	71	91	3	5	0	0.51
142650--142707	29	2.0	29	96	0	107	87	3	8	0	0.64
142650--142711	30	2.1	30	90	6	99	85	3	11	0	0.71
149551--149631	31	2.6	31	78	5	83	56	1	1	40	1.15
150148--150193	20	2.2	21	88	7	76	65	4	2	28	1.23
150499--150523	8	3.1	8	100	0	50	88	0	0	12	0.53
150504--150549	22	2.1	22	83	0	56	69	0	4	26	1.07
154240--154265	1	26.0	1	100	0	52	0	100	0	0	0.00
164148--164287	72	1.9	72	95	0	253	20	27	11	40	1.87
170476--170504	15	2.0	15	93	6	51	44	0	0	55	0.99
171035--171063	12	2.5	12	94	5	51	27	0	17	55	1.42
171312--171390	31	2.5	31	87	0	122	29	13	21	35	1.92
173076--173132	19	3.0	19	72	10	53	61	0	3	35	1.13
173115--173150	18	2.1	18	89	5	56	47	0	0	52	1.00
173130--173190	22	2.5	25	76	20	74	40	1	6	50	1.38
173148--173206	22	2.6	22	94	2	100	35	5	8	50	1.55
174223--174281	26	2.3	25	83	13	75	30	1	0	67	1.00
174223--174279	17	3.5	17	76	17	50	31	1	0	66	1.02
174226--174280	25	2.2	26	83	9	69	30	1	0	67	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
176615--176640	2	13.0	2	100	0	52	50	0	0	50	1.00
177108--177148	2	20.5	2	100	0	82	51	0	0	48	1.00
179887--179942	21	2.7	21	91	0	94	28	10	12	48	1.74

Tables:   1

The End!