Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold2049

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35


Found at i:591 original size:15 final size:15

Alignment explanation


    Indices: 571--600  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        561 TATTTATAGG

                           
        571 CTAGAATGTTGACAT
          1 CTAGAATGTTGACAT

                           
        586 CTAGAATGTTGACAT
          1 CTAGAATGTTGACAT

        601 ACTCGTTGGA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.33, C:0.13, G:0.20, T:0.33


Consensus pattern (15 bp):   
CTAGAATGTTGACAT

Found at i:931 original size:20 final size:22

Alignment explanation


    Indices: 908--948  Score: 68
    Period size: 20  Copynumber: 2.0  Consensus size: 22

        898 CAAAGCAATA

                                  
        908 TGTATCGATA-TTTCT-GGGTC
          1 TGTATCGATACTTTCTAGGGTC

                                 
        928 TGTATCGATACTTTCTAGGGT
          1 TGTATCGATACTTTCTAGGGT

        949 TTTGACCTTT


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  20   10  0.53
  21    5  0.26
  22    4  0.21

ACGTcount: A:0.17, C:0.15, G:0.24, T:0.44


Consensus pattern (22 bp):   
TGTATCGATACTTTCTAGGGTC
Done.