genome.fa.s2051.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2051
Parameters: 2 7 7 80 10 50 1000
Length:  82950

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3253--3315	32	2.0	32	84	6	83	39	15	15	28	1.89
5512--6615	55	19.4	55	82	8	1153	26	29	20	23	1.99
5540--6615	225	4.7	222	83	8	1238	27	29	20	23	1.99
7351--7427	21	3.7	21	89	3	111	35	12	16	35	1.88
7538--7563	13	2.0	13	100	0	52	30	15	15	38	1.88
7518--7583	33	2.0	33	87	0	96	25	15	16	42	1.87
10034--10109	27	2.8	28	90	6	111	23	32	21	22	1.98
10063--10267	79	2.6	79	83	3	243	24	29	16	29	1.97
11533--11584	22	2.2	24	83	6	72	19	7	25	48	1.75
11704--11753	19	2.6	19	87	6	66	42	10	12	36	1.76
13577--13634	30	1.9	30	96	0	107	48	5	24	22	1.71
13578--13653	30	2.6	29	87	4	100	43	6	26	23	1.78
14865--14956	36	2.6	35	85	11	127	33	11	23	30	1.91
14865--14991	34	3.8	34	82	10	138	32	11	23	32	1.91
16153--16350	58	3.4	58	76	2	166	51	13	9	25	1.71
17587--17662	20	3.8	19	79	8	89	31	14	14	39	1.86
18568--18635	19	3.9	19	78	21	85	35	11	14	38	1.83
18570--18632	32	2.0	32	96	0	117	34	12	15	36	1.86
18589--18613	13	1.9	13	100	0	50	36	16	16	32	1.90
18675--18700	13	2.0	13	100	0	52	30	15	15	38	1.88
18655--18721	33	2.0	33	85	0	89	26	14	16	41	1.87
21201--21372	52	3.3	51	76	5	157	31	23	11	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22560--22597	20	1.9	20	88	0	58	23	18	10	47	1.79
28685--28746	21	2.9	22	81	13	76	74	11	9	4	1.21
30138--30930	55	14.2	55	83	5	705	26	31	15	26	1.96
30176--31388	28	43.2	28	83	6	804	27	30	15	25	1.96
32277--32332	20	2.8	20	94	0	94	30	14	12	42	1.82
33815--33858	21	2.1	21	83	8	54	25	31	4	38	1.76
35666--35701	13	2.8	13	86	0	54	41	16	13	27	1.87
38734--38778	21	2.1	21	84	8	56	22	20	4	53	1.63
41006--41031	13	2.0	13	100	0	52	30	15	15	38	1.88
48258--48288	16	1.9	16	93	0	53	29	29	9	32	1.89
48545--48598	16	3.2	16	76	5	54	24	25	11	38	1.88
48640--48689	16	3.1	16	82	0	64	16	26	20	38	1.92
49337--49496	35	4.5	34	72	19	96	29	20	13	36	1.90
49900--49932	16	2.1	16	100	0	66	27	24	12	36	1.91
51516--51582	32	2.1	32	89	10	102	32	14	17	34	1.91
51538--51562	13	1.9	13	100	0	50	36	16	16	32	1.90
51614--51666	20	2.6	21	84	3	72	28	16	15	39	1.89
61295--61328	18	2.0	17	88	11	52	38	8	0	52	1.33
61740--61798	30	2.0	30	82	0	73	30	11	13	44	1.80
63704--63730	2	13.5	2	100	0	54	51	0	0	48	1.00
73063--73127	19	3.8	18	75	24	77	32	12	16	38	1.86
73065--73132	32	2.1	32	97	0	127	33	11	17	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73084--73108	13	1.9	13	100	0	50	36	16	16	32	1.90
73170--73194	13	1.9	13	100	0	50	32	16	16	36	1.90
73203--73331	52	2.5	52	96	0	231	35	17	17	28	1.93

Tables:   1

The End!