genome.fa.s2053.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2053
Parameters: 2 7 7 80 10 50 1000
Length:  60693

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4523--4587	20	3.6	20	73	26	81	29	12	18	40	1.87
4520--4620	33	3.1	33	94	1	168	31	13	17	36	1.89
4543--4600	13	3.9	13	73	26	53	32	13	17	36	1.89
6057--6086	10	3.0	10	95	0	51	23	30	16	30	1.96
6148--6196	18	2.5	20	90	6	75	30	16	18	34	1.93
6184--6208	13	1.9	13	100	0	50	36	16	16	32	1.90
6829--6945	51	2.3	51	89	1	173	43	9	16	30	1.79
7797--7830	11	3.1	11	88	12	52	0	17	0	82	0.67
7800--7838	15	2.6	14	84	11	51	0	20	0	79	0.73
7789--7838	26	1.9	26	87	0	73	2	22	0	76	0.89
8473--9008	167	3.2	165	86	5	699	49	9	13	27	1.72
9949--10039	42	2.2	42	84	4	112	35	19	28	16	1.94
9977--10195	42	5.2	41	71	12	133	33	20	27	18	1.96
10315--10532	43	5.1	43	75	2	170	33	16	30	20	1.94
10331--10492	85	1.9	86	82	3	202	32	17	30	19	1.95
10807--10919	42	2.7	42	72	2	102	33	15	30	20	1.93
10952--11137	43	4.3	43	79	2	151	32	17	30	19	1.95
10970--11137	86	2.0	86	79	2	185	33	17	30	18	1.94
11232--11372	44	3.2	44	74	7	135	33	15	29	21	1.95
11232--11345	43	2.6	44	81	5	133	34	15	26	23	1.95
11363--11688	48	6.8	48	80	2	350	40	18	21	20	1.92
11363--11627	143	1.9	143	82	1	343	40	18	20	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12646--12839	88	2.2	88	80	4	212	47	11	18	22	1.81
12704--12870	88	1.9	88	86	4	239	47	10	19	22	1.80
12724--12872	44	3.4	43	69	12	124	47	12	20	20	1.81
14697--14772	31	2.5	31	93	2	127	25	15	11	47	1.80
21173--21229	19	2.9	19	82	10	71	33	10	17	38	1.84
22970--23010	21	2.0	21	85	9	57	39	12	9	39	1.76
23050--23120	20	3.6	19	77	7	70	40	16	12	29	1.86
23197--23227	10	3.1	10	90	0	53	22	29	6	41	1.78
23215--23270	21	2.6	22	94	5	105	26	25	10	37	1.88
23353--23378	13	2.0	13	100	0	52	30	15	23	30	1.95
23857--23923	37	1.9	35	88	11	102	32	11	25	29	1.92
27011--27035	13	1.9	13	100	0	50	44	16	8	32	1.76
28678--28718	21	2.0	21	85	9	57	39	12	9	39	1.76
28758--28828	20	3.6	19	77	7	70	40	16	12	29	1.86
28905--28935	10	3.1	10	90	0	53	22	29	6	41	1.78
28923--28978	21	2.6	22	94	5	105	26	25	10	37	1.88
29061--29086	13	2.0	13	100	0	52	30	15	23	30	1.95
29566--29632	37	1.9	35	88	11	102	32	11	25	29	1.92
36323--36857	271	2.0	268	85	4	729	34	16	19	30	1.94
37327--37378	20	2.7	20	90	3	79	28	11	21	38	1.88
37420--37472	20	2.6	21	82	8	65	30	16	15	37	1.90
38067--38098	16	2.0	16	93	0	55	40	12	6	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40161--40191	8	3.8	8	95	4	53	61	25	0	12	1.32
44424--44468	3	15.0	3	90	0	72	31	35	0	33	1.58
46048--46115	33	2.1	32	86	2	91	32	13	19	35	1.90
46145--46196	21	2.5	21	81	9	63	28	17	15	38	1.90
46963--47027	33	2.0	33	88	11	98	30	15	15	38	1.88
47051--47107	20	3.0	19	87	12	82	33	15	15	35	1.90
47077--47140	32	2.0	33	87	3	94	39	14	15	31	1.87
52372--52402	3	10.3	3	92	0	53	29	35	0	35	1.58
53996--54021	13	2.0	13	100	0	52	38	15	15	30	1.88
53974--54042	33	2.1	33	91	5	113	31	13	18	36	1.89
54083--54135	20	2.6	21	82	8	65	30	16	15	37	1.90
54123--54147	13	1.9	13	100	0	50	36	16	16	32	1.90
56051--56317	148	1.8	150	82	4	346	41	11	12	34	1.79
57425--57465	11	3.5	11	81	12	55	0	19	2	78	0.87
58110--58655	167	3.3	166	82	11	660	50	9	12	27	1.70

Tables:   1

The End!