Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2054
Parameters: 2 7 7 80 10 50 1000
Length:  70443

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5350--5377
14
2.0
14
100
0
56
28
28
28
14
1.95
9761--9793
6
5.5
6
100
0
66
84
0
15
0
0.61
10375--10457
13
6.6
13
69
21
52
39
0
2
57
1.12
10358--10514
60
2.7
58
77
14
162
39
0
2
57
1.17
10380--10471
47
2.0
47
87
8
134
41
0
2
56
1.11
10418--10508
32
2.8
31
83
11
87
38
1
2
58
1.18
10423--10503
31
2.8
27
73
21
83
39
1
2
56
1.20
10431--10490
15
3.5
17
78
19
63
40
0
1
58
1.08
10393--10503
58
1.9
58
85
9
154
39
0
2
56
1.19
10495--10548
28
1.9
28
81
7
65
27
3
1
66
1.19
11287--11321
9
4.0
9
88
7
54
77
0
0
22
0.78
11605--11634
2
15.0
2
100
0
60
0
50
0
50
1.00
12794--12820
2
13.5
2
100
0
54
48
0
0
51
1.00
13348--13387
17
2.3
18
91
4
64
57
0
0
42
0.98
13388--13439
24
2.2
25
83
13
65
63
3
5
26
1.34
13437--13477
16
2.5
17
84
7
50
63
0
0
36
0.95
20088--20154
35
1.9
35
87
6
100
35
0
0
64
0.94
20847--20924
38
2.1
36
83
6
95
41
0
0
58
0.98
21262--21339
17
4.4
17
74
17
70
33
0
1
65
1.01
21282--21329
3
17.0
3
76
20
50
31
0
2
66
1.03
21262--21332
11
6.5
11
78
16
62
32
0
1
66
1.01
21266--21326
14
4.2
14
80
12
70
31
0
1
67
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21266--21345
11
6.8
11
75
13
54
31
0
1
67
0.99
21602--21698
11
8.9
11
73
15
67
60
0
2
37
1.08
21604--21698
16
6.2
16
73
16
76
61
0
2
36
1.08
21601--21653
28
2.0
26
88
7
79
62
0
0
37
0.96
22444--22473
4
7.5
4
100
0
60
23
0
0
76
0.78
23459--23499
17
2.4
17
87
4
55
53
0
0
46
1.00
23764--23805
14
2.8
15
89
7
59
76
0
0
23
0.79
23816--23892
20
3.7
21
75
11
70
51
2
0
45
1.14
24648--24715
32
2.1
32
89
5
102
47
1
4
47
1.31
25518--25583
22
3.0
22
84
4
98
56
3
0
40
1.15
25539--25641
36
2.7
38
75
17
99
54
3
0
41
1.19
25579--25624
21
2.1
23
88
8
69
52
2
0
45
1.13
25579--25634
19
2.6
21
81
15
62
51
3
0
44
1.18
27228--27267
15
2.5
16
88
8
55
57
0
0
42
0.98
27228--27270
16
2.6
17
85
10
63
55
0
0
44
0.99
28340--28387
20
2.5
19
86
10
62
2
14
6
77
1.06
29001--29069
33
2.1
32
84
12
88
2
20
0
76
0.91
30944--31072
54
2.4
54
94
2
224
35
18
13
32
1.89
31609--31681
36
2.0
36
100
0
146
36
30
16
16
1.91
34591--34640
26
1.9
26
83
0
64
34
2
2
62
1.18
36299--36325
2
13.5
2
100
0
54
51
0
0
48
1.00
39755--39799
2
22.5
2
90
0
72
48
4
0
46
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41617--41642
11
2.4
11
100
0
52
50
7
0
42
1.31
42417--42449
12
2.6
13
80
9
50
57
3
6
33
1.38
43089--43119
12
2.5
13
94
5
55
48
0
0
51
1.00
43920--44042
14
8.1
14
71
15
66
39
19
3
38
1.68
43919--44043
32
4.0
32
85
2
146
38
19
3
39
1.68
43925--44026
18
6.2
18
67
19
53
36
21
2
39
1.69
49453--49537
41
2.1
40
84
6
109
45
0
1
52
1.08
52315--52366
10
4.9
11
82
15
65
80
0
19
0
0.71
52313--52366
20
2.8
20
88
5
85
79
0
20
0
0.73
62214--62262
21
2.3
22
79
13
57
16
12
12
59
1.62
70394--70418
13
1.9
13
100
0
50
44
0
0
56
0.99

Tables:   1

The End!