Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2060
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27443
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.34
Found at i:1459 original size:21 final size:20
Alignment explanation
Indices: 1422--1474 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 20
1412 TTTTTATATT
*
1422 ATTATTTATATAAATTTATA
1 ATTATTTAAATAAATTTATA
* *
1442 ATTAATTTAAATATATTTTTA
1 ATT-ATTTAAATAAATTTATA
1463 ATTA-TTAAATAA
1 ATTATTTAAATAA
1475 TAATTTAGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
19 7 0.25
20 4 0.14
21 17 0.61
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
ATTATTTAAATAAATTTATA
Found at i:3383 original size:21 final size:21
Alignment explanation
Indices: 3357--3396 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
3347 CTTGGCACTT
3357 ACAATCTCACAGATTCAAGTA
1 ACAATCTCACAGATTCAAGTA
3378 ACAATCTCACAGATTCAAG
1 ACAATCTCACAGATTCAAG
3397 AGGAAGCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.42, C:0.25, G:0.10, T:0.23
Consensus pattern (21 bp):
ACAATCTCACAGATTCAAGTA
Found at i:4264 original size:2 final size:2
Alignment explanation
Indices: 4257--4288 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
4247 AATGACATAC
4257 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4289 TAAAATTTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6103 original size:20 final size:20
Alignment explanation
Indices: 6031--6104 Score: 76
Period size: 20 Copynumber: 3.6 Consensus size: 20
6021 CTGCTAAGGA
* *
6031 AATGTATCGATACATTACTA
1 AATGTATCGATACATTTCTC
* *
6051 AATATATCGATACATGTTTTC
1 AATGTATCGATACAT-TTCTC
*
6072 AAATGAATCGATACATTTCTC
1 -AATGTATCGATACATTTCTC
*
6093 ATTGTATCGATA
1 AATGTATCGATA
6105 TATTCTGGGT
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
20 24 0.56
21 6 0.14
22 13 0.30
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (20 bp):
AATGTATCGATACATTTCTC
Found at i:7034 original size:20 final size:21
Alignment explanation
Indices: 6996--7035 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
6986 CAGCCCTTAA
*
6996 TCATGCATTTTTTACCATGTT
1 TCATGCATTTTTCACCATGTT
*
7017 TCATGCA-TTTTCAGCATGT
1 TCATGCATTTTTCACCATGT
7036 CCAACATCTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.20, C:0.20, G:0.12, T:0.47
Consensus pattern (21 bp):
TCATGCATTTTTCACCATGTT
Found at i:14995 original size:155 final size:152
Alignment explanation
Indices: 14711--15452 Score: 415
Period size: 155 Copynumber: 4.9 Consensus size: 152
14701 TAAAATGACG
* * * * * * *
14711 AACCTATTCCTAAATACATACCTTTGGCATAAAAGTGACTTGTTGACTATTTAGGATTTGGTTAT
1 AACCTATT-CTAAATATATACCTTTGGCATAGAAGCGACTAG-TGACTATCTAGGACTTGGTTTT
** * ** * * *
14776 AG-TGAATTAACAAAATGCCTTGGGGTATACCTTCGACGTAAAAGTATCTCGATAATCTTAAAAG
64 AGAAAAATTAAGAAAATGCCTTAAGGTATACTTTCGACGTGAAAGTATCCCGATAATCTTAAAAG
* * * *
14840 ATATAAAATAATAAATAAAAAAATA
129 ACACAAAATAAT-AAGAAAAAAACA
* * *
14865 AATCTATTCTAAATATATACTTTTGGCACAGAAGCGATCTAGTGACTATCTAGGACTTGGTTTTA
1 AACCTATTCTAAATATATACCTTTGGCATAGAAGCGA-CTAGTGACTATCTAGGACTTGGTTTTA
14930 GAAAAATTAAGAAAATGCTCTT-AGGTAATACTTTCGACGTGAAAGTATCCCGATAATCTTAAAA
65 GAAAAATTAAGAAAATGC-CTTAAGGT-ATACTTTCGACGTGAAAGTATCCCGATAATCTTAAAA
* * *
14994 GACGCAAAATGATAAGAAAAAGACA
128 GACACAAAATAATAAGAAAAAAACA
* * * * * * * *
15019 AACCTA-TCATAAATATACACCATTGGCATAGAAACGACCTGGTAACTATCTAGCACTCGATTTT
1 AACCTATTC-TAAATATATACCTTTGGCATAGAAGCGA-CTAGTGACTATCTAGGACTTGGTTTT
* * * ** * * *
15083 AGAAAAGTTACGAAAATGCCTTTAAGGTATA-TCTTCGATGTGAAAGTATCTTGGTAACCCT-AA
64 AGAAAAATTAAGAAAATGCC-TTAAGGTATACT-TTCGACGTGAAAGTATCCCGATAATCTTAAA
* * *
15146 AGAGCGTA-AAAATAACAAGAAAAAGATA
127 AGA-C--ACAAAATAATAAGAAAAAAACA
** * * * * * * * *
15174 AACCTACCCTAAA-ACTATACCTTTGGCATAGAAGCGATTCGATGGCCACCTA-CAATTCGATTT
1 AACCTATTCTAAATA-TATACCTTTGGCATAGAAGCGACTAG-TGACTATCTAGGACTT-GGTTT
** ** * * * *
15237 TAGAAAAATTACCAAAACACCCTCAAAGTATACCTTT-GACGTAAAAGTATCTCGATAA-CTCTA
63 TAGAAAAATTAAGAAAA-TGCCTTAAGGTATA-CTTTCGACGTGAAAGTATCCCGATAATCT-TA
* * *
15300 AAGGACATAAAAATGATAAG--AAAAA-A
125 AAAGACA-CAAAATAATAAGAAAAAAACA
* * * * * * * * * ** *
15326 AA-CTATCCTAATTGTACACCTTTGGTATA-AA--AAC-GGTGATTACCTAGGA-TTCAATTCTA
1 AACCTATTCTAAATATATACCTTTGGCATAGAAGCGACTAGTGACTATCTAGGACTT-GGTTTTA
** * * *
15385 GAAAAATTACTAAAATGCCTTTAGTGTATACTTTCGACATGAAAATATCCCGATAATCTTAAAAG
65 GAAAAATTAAGAAAATGCCTTAAG-GTATACTTTCGACGTGAAAGTATCCCGATAATCTTAAAAG
15450 ACA
129 ACA
15453 TGAAAATATT
Statistics
Matches: 461, Mismatches: 100, Indels: 62
0.74 0.16 0.10
Matches are distributed among these distances:
145 8 0.02
146 59 0.13
147 4 0.01
148 1 0.00
150 2 0.00
151 21 0.05
152 3 0.01
153 59 0.13
154 136 0.30
155 158 0.34
156 9 0.02
157 1 0.00
ACGTcount: A:0.41, C:0.16, G:0.15, T:0.28
Consensus pattern (152 bp):
AACCTATTCTAAATATATACCTTTGGCATAGAAGCGACTAGTGACTATCTAGGACTTGGTTTTAG
AAAAATTAAGAAAATGCCTTAAGGTATACTTTCGACGTGAAAGTATCCCGATAATCTTAAAAGAC
ACAAAATAATAAGAAAAAAACA
Found at i:15014 original size:153 final size:154
Alignment explanation
Indices: 14702--15132 Score: 399
Period size: 154 Copynumber: 2.8 Consensus size: 154
14692 AAAACGGCTT
* * * * * * *
14702 AAAATGACGAACCTATTCCTAAATACATACCTTTGGCATAAAAGTGACTTGTTGACTATTTAGGA
1 AAAAAGACAAACCTATT-CTAAATATATACCTTTGGCATAGAAGCGACTAG-TGACTATCTAGGA
* * ** * ** * * *
14767 TTTGGTTATAG-TGAATTAACAAAATGCCTTGGGGTATACCTTCGACGTAAAAGTATCTCGATAA
64 CTTGGTTTTAGAAAAATTAAGAAAATGCCTTAAGGTATACTTTCGACGTGAAAGTATCCCGATAA
* *
14831 TCTTAAAAGATATAAAATAATAAATA
129 TCTTAAAAGACACAAAATAATAAATA
* * * *
14857 AAAAA-ATAAATCTATTCTAAATATATACTTTTGGCACAGAAGCGATCTAGTGACTATCTAGGAC
1 AAAAAGACAAACCTATTCTAAATATATACCTTTGGCATAGAAGCGA-CTAGTGACTATCTAGGAC
14921 TTGGTTTTAGAAAAATTAAGAAAATGCTCTT-AGGTAATACTTTCGACGTGAAAGTATCCCGATA
65 TTGGTTTTAGAAAAATTAAGAAAATGC-CTTAAGGT-ATACTTTCGACGTGAAAGTATCCCGATA
* * *
14985 ATCTTAAAAGACGCAAAATGAT-AA-G
128 ATCTTAAAAGACACAAAATAATAAATA
* * * * * *
15010 AAAAAGACAAACCTA-TCATAAATATACACCATTGGCATAGAAACGACCTGGTAACTATCTAGCA
1 AAAAAGACAAACCTATTC-TAAATATATACCTTTGGCATAGAAGCGA-CTAGTGACTATCTAGGA
* * * * *
15074 CTCGATTTTAGAAAAGTTACGAAAATGCCTTTAAGGTATA-TCTTCGATGTGAAAGTATC
64 CTTGGTTTTAGAAAAATTAAGAAAATGCC-TTAAGGTATACT-TTCGACGTGAAAGTATC
15133 TTGGTAACCC
Statistics
Matches: 226, Mismatches: 41, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
153 54 0.24
154 118 0.52
155 54 0.24
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (154 bp):
AAAAAGACAAACCTATTCTAAATATATACCTTTGGCATAGAAGCGACTAGTGACTATCTAGGACT
TGGTTTTAGAAAAATTAAGAAAATGCCTTAAGGTATACTTTCGACGTGAAAGTATCCCGATAATC
TTAAAAGACACAAAATAATAAATA
Found at i:16722 original size:17 final size:17
Alignment explanation
Indices: 16702--16765 Score: 56
Period size: 17 Copynumber: 3.4 Consensus size: 17
16692 TAAAATCTAT
16702 AAACTCAATCAATCATC
1 AAACTCAATCAATCATC
* *
16719 AAACTCAATAAAATAAAATC
1 AAACTCAAT-CAAT--CATC
16739 TATAAACTCAATCAATCATC
1 ---AAACTCAATCAATCATC
16759 AAACTCA
1 AAACTCA
16766 CTAAAATGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 12
0.70 0.08 0.23
Matches are distributed among these distances:
17 16 0.43
18 3 0.08
20 6 0.16
22 3 0.08
23 9 0.24
ACGTcount: A:0.53, C:0.23, G:0.00, T:0.23
Consensus pattern (17 bp):
AAACTCAATCAATCATC
Found at i:16730 original size:40 final size:40
Alignment explanation
Indices: 16686--16777 Score: 166
Period size: 40 Copynumber: 2.3 Consensus size: 40
16676 ACCTTTTAAC
16686 ATAAAATAAAATCTATAAACTCAATCAATCATCAAACTCA
1 ATAAAATAAAATCTATAAACTCAATCAATCATCAAACTCA
16726 ATAAAATAAAATCTATAAACTCAATCAATCATCAAACTCA
1 ATAAAATAAAATCTATAAACTCAATCAATCATCAAACTCA
* *
16766 CTAAAATGAAAT
1 ATAAAATAAAAT
16778 ATCAAAGATT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.55, C:0.18, G:0.01, T:0.25
Consensus pattern (40 bp):
ATAAAATAAAATCTATAAACTCAATCAATCATCAAACTCA
Found at i:17287 original size:27 final size:27
Alignment explanation
Indices: 17252--17351 Score: 137
Period size: 27 Copynumber: 3.7 Consensus size: 27
17242 AAACAACATG
* * * * *
17252 CCACCATTTTTGGCAAATAAAAAGAAA
1 CCACAATTTTTGACAAACACAAAGTAA
* *
17279 TCACCATTTTTGACAAACACAAAGTAA
1 CCACAATTTTTGACAAACACAAAGTAA
17306 CCACAATTTTTGACAAACACAAAGTAA
1 CCACAATTTTTGACAAACACAAAGTAA
17333 CCACAATTTTTGACAAACA
1 CCACAATTTTTGACAAACA
17352 ATGGGTACTT
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.46, C:0.22, G:0.08, T:0.24
Consensus pattern (27 bp):
CCACAATTTTTGACAAACACAAAGTAA
Found at i:17291 original size:51 final size:53
Alignment explanation
Indices: 17236--17352 Score: 130
Period size: 54 Copynumber: 2.2 Consensus size: 53
17226 AGCCACAAAA
* * * * * * *
17236 TTTGACAAACAACA-T-GCCACCATTTTTGGCAAATAAAAAGAAATCACCATT
1 TTTGACAAACAAAAGTAACCACAATTTTTGACAAACAAAAAGAAACCACAATT
* *
17287 TTTGACAAACACAAAGTAACCACAATTTTTGACAAACACAAAGTAACCACAATT
1 TTTGACAAACA-AAAGTAACCACAATTTTTGACAAACAAAAAGAAACCACAATT
17341 TTTGACAAACAA
1 TTTGACAAACAA
17353 TGGGTACTTT
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
51 11 0.20
52 2 0.04
53 2 0.04
54 39 0.72
ACGTcount: A:0.46, C:0.21, G:0.09, T:0.24
Consensus pattern (53 bp):
TTTGACAAACAAAAGTAACCACAATTTTTGACAAACAAAAAGAAACCACAATT
Found at i:21876 original size:27 final size:27
Alignment explanation
Indices: 21833--21906 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
21823 AAACAACATG
*
21833 TCACCATTTTTGACAAATAAAAAGAAA
1 TCACAATTTTTGACAAATAAAAAGAAA
* * * *
21860 -CTACTATTTTTGACAAACATAAAGTAA
1 TC-ACAATTTTTGACAAATAAAAAGAAA
21887 TCACAATTTTTGACAAATAA
1 TCACAATTTTTGACAAATAA
21907 TGAGTGGTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
26 1 0.03
27 36 0.95
28 1 0.03
ACGTcount: A:0.47, C:0.15, G:0.07, T:0.31
Consensus pattern (27 bp):
TCACAATTTTTGACAAATAAAAAGAAA
Found at i:22562 original size:20 final size:18
Alignment explanation
Indices: 22537--22652 Score: 71
Period size: 20 Copynumber: 6.3 Consensus size: 18
22527 TTACGGCTAT
22537 ATATAATATACATAAATATA
1 ATATAATATA-ATAAATA-A
* *
22557 ATATAAATAAAATAATTAAA
1 ATAT-AATATAATAAAT-AA
22577 ATATAATATAATTAAATAA
1 ATATAATATAA-TAAATAA
**
22596 ATAT-AT-T-A-AAATTT
1 ATATAATATAATAAATAA
*
22610 ATATAATATAAATGAATAA
1 ATATAATAT-AATAAATAA
*
22629 CATATAA-ATATTAATATAA
1 -ATATAATATAATAA-ATAA
22648 ATATA
1 ATATA
22653 TTAATATTTA
Statistics
Matches: 75, Mismatches: 11, Indels: 22
0.69 0.10 0.20
Matches are distributed among these distances:
14 8 0.11
15 2 0.03
16 2 0.03
17 1 0.01
18 11 0.15
19 21 0.28
20 24 0.32
21 6 0.08
ACGTcount: A:0.61, C:0.02, G:0.01, T:0.36
Consensus pattern (18 bp):
ATATAATATAATAAATAA
Found at i:22578 original size:14 final size:15
Alignment explanation
Indices: 22548--22621 Score: 75
Period size: 14 Copynumber: 5.0 Consensus size: 15
22538 TATAATATAC
22548 ATAAATATAA-TATAA
1 ATAAATATAATTA-AA
22563 ATAAA-ATAATTAAA
1 ATAAATATAATTAAA
22577 ATATAATATAATT-AA
1 ATA-AATATAATTAAA
22592 ATAAATAT-ATTAAA
1 ATAAATATAATTAAA
**
22606 ATTTATATAATATAAA
1 ATAAATATAAT-TAAA
22622 TGAATAACAT
Statistics
Matches: 51, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
13 3 0.06
14 22 0.43
15 16 0.31
16 10 0.20
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (15 bp):
ATAAATATAATTAAA
Found at i:22655 original size:14 final size:14
Alignment explanation
Indices: 22537--22659 Score: 63
Period size: 14 Copynumber: 9.3 Consensus size: 14
22527 TTACGGCTAT
* *
22537 ATATAATATACATAA
1 ATATAA-ATATATTA
22552 ATAT-AATATA--A
1 ATATAAATATATTA
22563 ATA-AAATA-ATTA
1 ATATAAATATATTA
*
22575 AAATATAATATAATTA
1 ATATA-AATAT-ATTA
22591 A-ATAAATATATTA
1 ATATAAATATATTA
**
22604 A-A-ATTTATA-TA
1 ATATAAATATATTA
22615 ATATAAATGA-A-TA
1 ATATAAAT-ATATTA
*
22628 ACATATAA-ATATTA
1 ATATA-AATATATTA
22642 ATATAAATATATTA
1 ATATAAATATATTA
22656 ATAT
1 ATAT
22660 TTAATGTCTA
Statistics
Matches: 86, Mismatches: 8, Indels: 29
0.70 0.07 0.24
Matches are distributed among these distances:
10 1 0.01
11 11 0.13
12 10 0.12
13 23 0.27
14 29 0.34
15 7 0.08
16 5 0.06
ACGTcount: A:0.60, C:0.02, G:0.01, T:0.37
Consensus pattern (14 bp):
ATATAAATATATTA
Found at i:22660 original size:6 final size:6
Alignment explanation
Indices: 22548--22652 Score: 55
Period size: 6 Copynumber: 17.5 Consensus size: 6
22538 TATAATATAC
22548 ATAAAT AT-AAT ATAAAT A-AAAT AATTAAA- ATATAAT AT-AAT -TAAAT
1 ATAAAT ATAAAT ATAAAT ATAAAT -A-TAAAT ATA-AAT ATAAAT ATAAAT
** *
22594 A-AATAT ATTAAA- ATTTAT AT-AAT ATAAAT GAATAACAT ATAAAT ATTAAT
1 ATAA-AT A-TAAAT ATAAAT ATAAAT ATAAAT --ATAA-AT ATAAAT ATAAAT
22644 ATAAAT ATA
1 ATAAAT ATA
22653 TTAATATTTA
Statistics
Matches: 78, Mismatches: 5, Indels: 32
0.68 0.04 0.28
Matches are distributed among these distances:
4 1 0.01
5 25 0.32
6 34 0.44
7 7 0.09
8 9 0.12
9 2 0.03
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.36
Consensus pattern (6 bp):
ATAAAT
Found at i:23119 original size:15 final size:16
Alignment explanation
Indices: 23080--23119 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
23070 AGTCAAGTTT
*
23080 GGCTGCAACTTTATAA
1 GGCTGAAACTTTATAA
23096 GGCTGAAACTTTATAA
1 GGCTGAAACTTTATAA
23112 GG-TGAAAC
1 GGCTGAAAC
23120 AAACAGCGCG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.28
Consensus pattern (16 bp):
GGCTGAAACTTTATAA
Found at i:25790 original size:17 final size:17
Alignment explanation
Indices: 25768--25804 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
25758 AGAATACCCC
25768 CAAATGGCTCGTGAATT
1 CAAATGGCTCGTGAATT
*
25785 CAAATGGCTCGTGACTT
1 CAAATGGCTCGTGAATT
25802 CAA
1 CAA
25805 GCGTAGCATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (17 bp):
CAAATGGCTCGTGAATT
Found at i:26751 original size:13 final size:13
Alignment explanation
Indices: 26729--26760 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
26719 AAGAGATTGA
*
26729 AGAGGGATACAAG
1 AGAGGAATACAAG
26742 AGAGGAATACAAG
1 AGAGGAATACAAG
26755 AGAGGA
1 AGAGGA
26761 TGCTTGAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.50, C:0.06, G:0.38, T:0.06
Consensus pattern (13 bp):
AGAGGAATACAAG
Found at i:26904 original size:27 final size:28
Alignment explanation
Indices: 26866--26944 Score: 101
Period size: 27 Copynumber: 2.9 Consensus size: 28
26856 AAACAATAAG
*
26866 CCATAATTTTTGACAAACTA-AAAGGAA
1 CCATCATTTTTGACAAACTACAAAGGAA
*
26893 CCATCATTTTTGACAAA-TACAAAGTAA
1 CCATCATTTTTGACAAACTACAAAGGAA
* *
26920 CCACCATTGTTGACAAAC-ACAAAGG
1 CCATCATTTTTGACAAACTACAAAGG
26945 GTGGCTTTTT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
26 2 0.04
27 43 0.96
ACGTcount: A:0.44, C:0.20, G:0.11, T:0.24
Consensus pattern (28 bp):
CCATCATTTTTGACAAACTACAAAGGAA
Done.