genome.fa.s2061.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2061
Parameters: 2 7 7 80 10 50 1000
Length:  139112

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--44	20	2.0	21	95	4	75	75	4	0	19	0.98
385--421	19	2.0	19	89	5	58	45	0	8	45	1.32
5790--5834	16	2.8	16	78	15	56	66	0	0	33	0.92
6823--7120	148	2.0	149	86	1	411	53	10	6	29	1.59
7670--7707	13	2.8	14	84	4	51	65	0	0	34	0.93
7936--8043	52	2.1	52	81	8	123	52	0	0	46	1.06
7969--8031	20	3.3	20	74	14	62	57	1	0	41	1.08
8035--8076	19	2.0	22	82	13	54	64	0	0	35	0.94
11245--11278	16	2.1	16	88	0	50	20	0	5	73	1.04
20729--20763	18	1.9	18	88	11	54	77	0	2	20	0.90
22568--22608	13	3.2	13	89	0	64	31	12	21	34	1.91
23074--23212	39	3.6	39	74	1	127	46	5	10	38	1.60
23198--23652	173	2.7	169	80	7	512	40	7	18	33	1.79
23719--23914	92	2.1	92	83	5	245	39	4	19	36	1.71
23768--23940	92	1.9	92	82	7	217	39	5	19	35	1.74
26123--26636	271	1.9	271	93	0	884	32	12	20	34	1.90
28559--28613	7	8.0	7	76	11	51	27	0	1	70	0.97
28560--28595	16	2.4	14	90	9	54	22	0	2	75	0.94
28551--28610	12	4.8	12	75	15	50	28	0	1	70	0.97
30741--30782	22	1.9	22	85	0	57	52	26	16	4	1.63
30967--31012	23	2.0	23	91	0	74	36	4	30	28	1.76
33045--33070	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33025--33088	32	2.0	33	90	3	103	28	14	15	42	1.86
33832--33880	20	2.4	20	96	3	89	44	18	4	32	1.68
35650--35688	13	3.0	13	92	0	60	38	15	17	28	1.91
41208--41246	20	2.0	20	85	5	53	38	10	10	41	1.73
41279--41340	32	1.9	33	90	3	99	30	14	12	41	1.83
43257--43543	158	1.8	158	88	1	441	47	13	6	32	1.69
43388--43667	138	2.0	138	89	5	424	47	13	7	31	1.71
43714--44117	157	2.6	155	86	5	530	45	12	7	34	1.70
44251--44343	4	22.5	4	71	23	52	1	25	0	73	0.90
44255--44313	11	5.4	11	73	15	50	1	22	0	76	0.88
44252--44340	26	3.5	26	77	8	67	1	24	0	74	0.89
46123--46163	21	2.0	20	90	4	64	31	19	7	41	1.79
46433--46498	28	2.3	29	92	5	107	33	22	4	39	1.75
47852--47931	28	2.8	28	74	20	76	50	15	13	21	1.78
54627--54681	13	4.7	13	70	25	59	38	16	12	32	1.86
54627--54695	33	2.1	33	89	5	104	39	14	13	33	1.85
54723--54778	19	2.9	19	89	5	85	35	17	12	33	1.88
54764--54790	13	2.1	13	100	0	54	40	14	14	29	1.86
63292--63419	52	2.5	52	94	3	224	30	17	17	33	1.94
63428--63452	13	1.9	13	100	0	50	36	16	16	32	1.90
63493--63559	33	2.0	33	88	0	98	40	13	11	34	1.81
63515--63539	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64676--64730	20	2.8	20	91	0	83	34	18	10	36	1.86
65357--65418	31	2.0	32	93	3	108	22	22	9	45	1.81
65871--65915	22	2.1	21	87	4	63	62	2	8	26	1.37
69897--69963	33	2.0	33	85	0	89	44	16	13	25	1.84
69918--69943	13	2.0	13	100	0	52	38	15	15	30	1.88
69983--70050	19	3.9	18	76	23	83	38	14	11	35	1.83
70005--70029	13	1.9	13	100	0	50	32	16	16	36	1.90
69986--70048	32	2.0	32	96	0	117	36	15	12	34	1.86
70711--71449	55	13.3	55	89	3	1065	21	20	30	28	1.98
70783--70871	29	3.2	29	69	15	96	22	17	31	28	1.97
72405--72450	15	3.2	14	84	9	58	0	6	6	86	0.69
72430--72463	14	2.6	14	90	9	54	0	14	2	82	0.79
72430--72464	13	2.8	13	91	4	54	0	14	5	80	0.89
85338--85363	13	2.0	13	100	0	52	38	15	15	30	1.88
85317--85383	33	2.0	33	88	0	98	43	16	14	25	1.86
85403--85470	19	3.9	18	76	23	83	38	14	11	35	1.83
85425--85449	13	1.9	13	100	0	50	32	16	16	36	1.90
85406--85468	32	2.0	32	96	0	117	36	15	12	34	1.86
86141--86191	22	2.3	23	86	3	68	25	0	0	74	0.82
89079--89141	21	2.9	21	75	15	65	38	1	9	50	1.44
97447--97560	30	3.8	30	80	2	122	28	25	14	31	1.95
97445--97561	59	2.0	60	87	1	173	27	26	14	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97590--98221	31	19.8	31	77	5	435	31	30	15	22	1.95
97598--98221	64	9.8	62	78	5	478	32	29	15	22	1.95
101233--101279	15	2.9	15	84	15	58	29	19	4	46	1.68
108942--108995	20	2.6	21	82	2	65	37	18	11	33	1.86
109036--109094	20	3.0	20	87	0	82	35	13	5	45	1.66
109954--109978	13	1.9	13	100	0	50	32	16	16	36	1.90
109933--109996	33	2.0	32	93	3	110	32	15	14	37	1.87
109934--109996	19	3.6	18	74	26	64	33	15	14	36	1.88
115704--115767	28	2.3	28	91	2	103	32	15	26	25	1.95
115756--115872	51	2.3	51	82	2	146	35	11	21	31	1.88
115808--116055	79	3.1	79	80	2	291	33	13	24	28	1.93
116013--116085	28	2.6	28	80	4	85	28	15	30	26	1.96
116095--116216	51	2.4	51	76	5	131	33	9	22	33	1.87
118543--118637	40	2.4	40	85	3	129	43	11	15	29	1.82
118543--118637	20	4.8	20	81	12	106	43	11	15	29	1.82
120364--120388	13	1.9	13	100	0	50	32	16	16	36	1.90
121022--121078	13	3.9	13	76	24	60	35	14	17	33	1.90
121035--121097	19	3.7	18	76	24	73	33	12	17	36	1.88
121021--121105	32	2.7	32	98	0	161	32	12	17	36	1.88
121150--121174	13	1.9	13	100	0	50	32	16	16	36	1.90
121183--121311	52	2.5	52	94	0	231	35	17	17	28	1.93
129705--129854	52	2.9	52	90	4	232	32	17	16	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129896--129949	20	2.7	21	85	8	76	42	16	11	29	1.83
135839--135923	31	2.7	31	82	12	111	41	5	17	35	1.74

Tables:   1

The End!