genome.fa.s2062.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2062
Parameters: 2 7 7 80 10 50 1000
Length:  49320

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77--107	2	15.5	2	93	0	53	48	0	3	48	1.17
1525--1561	19	1.9	19	94	0	65	35	21	16	27	1.94
5535--5592	19	3.1	18	88	11	89	32	17	15	34	1.91
5576--5601	13	2.0	13	100	0	52	38	15	15	30	1.88
7110--7135	13	2.0	13	100	0	52	30	15	15	38	1.88
9229--9357	51	2.6	48	85	9	177	25	27	13	33	1.93
9292--9486	79	2.5	77	80	5	232	28	25	12	32	1.93
9288--9686	200	2.0	196	83	6	502	29	25	12	31	1.93
9509--9733	79	2.8	80	79	5	217	29	24	12	33	1.92
9488--9765	78	3.5	78	77	6	283	29	25	12	32	1.93
9488--9789	157	1.9	159	81	4	369	29	25	13	31	1.93
9725--9844	51	2.4	51	84	0	168	29	26	14	30	1.95
9824--9900	28	2.8	28	78	7	77	23	28	20	27	1.99
9852--10023	79	2.2	80	82	3	213	27	23	15	33	1.95
18551--18612	19	3.6	18	69	24	53	33	17	14	33	1.90
18639--18713	20	3.8	19	85	3	96	36	13	14	36	1.85
19605--19659	3	18.3	3	100	0	110	67	0	0	32	0.91
21305--21334	2	15.5	2	93	6	53	0	50	0	50	1.00
21542--21757	116	1.9	116	85	5	303	37	16	10	35	1.84
22820--23010	79	2.4	78	82	6	210	38	17	13	30	1.88
24900--24990	46	2.0	46	83	10	116	39	8	10	40	1.72
28200--28234	16	2.2	16	90	10	54	17	0	8	74	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34105--34143	20	1.9	21	84	5	53	41	0	5	53	1.23
35042--35086	21	2.1	21	84	8	56	55	0	0	44	0.99
35056--35098	21	2.0	21	86	0	59	51	2	0	46	1.13
35109--35155	25	1.9	25	83	12	62	46	6	2	44	1.40
37974--38178	35	5.9	35	92	0	340	45	5	30	18	1.71
39395--40136	79	9.4	79	91	0	1173	27	26	14	31	1.95
46341--46834	115	4.2	115	88	6	701	26	28	19	25	1.99
46346--46844	61	8.5	60	83	12	626	25	28	19	26	1.99
46345--46844	237	2.1	231	89	6	767	25	28	19	26	1.99
46877--46986	55	2.0	55	92	3	186	27	30	20	22	1.98
46726--47297	155	3.7	150	86	7	785	25	30	19	24	1.98
47003--47143	54	2.4	57	84	11	173	26	29	21	21	1.99
47164--47359	60	3.3	58	86	7	265	25	29	21	23	1.99
47008--47570	215	2.6	214	91	4	867	24	28	20	26	1.99
47400--47632	61	3.9	59	89	5	351	25	24	20	30	1.99
47649--47786	73	1.9	74	89	1	215	21	21	15	40	1.91
47649--47786	37	3.8	37	90	1	206	21	21	15	40	1.91
48553--48756	35	5.9	34	89	5	320	45	5	29	18	1.73
48653--48718	21	3.5	21	67	26	56	50	6	24	19	1.70

Tables:   1

The End!