Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2064
Parameters: 2 7 7 80 10 50 1000
Length:  44040

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5721--5843
47
2.6
47
94
0
210
4
13
34
46
1.65
5993--6033
17
2.4
18
88
8
59
4
26
12
56
1.56
5990--6203
45
4.8
45
92
0
338
7
23
13
55
1.64
6037--6116
18
5.0
17
69
23
66
8
23
15
52
1.70
6346--6379
16
2.1
17
88
5
52
20
2
0
76
0.92
6952--6993
17
2.5
17
100
0
84
42
11
19
26
1.85
7091--7142
16
3.5
14
78
14
59
7
3
9
78
1.06
7096--7142
24
1.9
24
86
4
67
8
4
10
76
1.13
9340--10785
482
3.0
481
94
0
2525
37
16
10
34
1.84
11335--11369
2
17.5
2
93
0
61
48
0
0
51
1.00
17164--17224
28
2.2
28
100
0
122
37
9
18
34
1.83
22248--22329
5
17.6
5
68
18
52
62
0
1
36
1.03
22245--22323
34
2.4
32
75
10
81
64
0
0
35
0.94
22604--22633
12
2.4
13
88
11
53
46
0
0
53
1.00
22826--22956
53
2.4
55
81
9
137
56
2
5
35
1.35
31237--31310
19
3.6
19
73
19
76
24
5
21
48
1.71
32858--32891
12
2.8
12
90
4
50
85
0
14
0
0.60
40407--40452
17
2.7
17
86
6
58
63
0
2
34
1.07
40419--40490
17
3.8
20
83
9
73
54
0
0
45
0.99
40453--40524
22
3.3
22
80
14
69
43
1
0
55
1.08
40482--40529
24
2.0
24
84
8
62
43
2
0
54
1.12
42643--42701
19
2.9
20
78
16
59
57
0
0
42
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42655--42709
19
2.8
20
82
17
64
61
0
0
38
0.96
42655--42713
21
2.9
21
76
19
54
62
0
0
37
0.95
42650--42717
33
2.1
33
83
5
84
60
0
0
39
0.97
43048--43072
13
1.9
13
100
0
50
88
0
12
0
0.53
43101--43134
17
1.9
17
88
5
50
38
11
20
29
1.88

Tables:   1

The End!