Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold207
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1047254
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 71453 characters in sequence are not A, C, G, or T
File 5 of 6
Found at i:739856 original size:154 final size:156
Alignment explanation
Indices: 739649--739936 Score: 429
Period size: 154 Copynumber: 1.8 Consensus size: 156
739639 GAAAGCATCT
739649 TGCTCTTTGAAGACTGAAAAGTGCCACCAACTTGGGTGGGCTTTAAAAAGAGAAGGCGTCCTGCT
1 TGCTCTTTGAAGACTGAAAAGTGCCACCAACTTGGGTGGGCTTTAAAAAGAGAAGGCGTCCTGCT
* ** *
739714 CTTTGAGGACT-GAAAGTGCCACCGGCTTGTGTGGGCTTT-AAAAGGCATCCTGCTCTTTGAGGA
66 CTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGCCTTTAAAAAGGCATCCTGCTCTTTGAGGA
739777 TAAAAAGGCGAAAAGAGAGAGCGTCC
131 TAAAAAGGCGAAAAGAGAGAGCGTCC
* * * *
739803 TGCTCTTTGAGGACT-AGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGC
1 TGCTCTTTGAAGACTGA-AAAGTGCCACCAACTTGGGTGGGCTTTAAAAAGAGAAGGCGTCCTGC
*
739867 TCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGCCTTTGAAAGAAAAGGCGTCCTGCTCTTT
65 TCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGCCTTT---A-AAAAGGCATCCTGCTCTTT
739932 GAGGA
126 GAGGA
739937 CTGGAAAATG
Statistics
Matches: 118, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
153 1 0.01
154 70 0.59
155 24 0.20
160 23 0.19
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (156 bp):
TGCTCTTTGAAGACTGAAAAGTGCCACCAACTTGGGTGGGCTTTAAAAAGAGAAGGCGTCCTGCT
CTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGCCTTTAAAAAGGCATCCTGCTCTTTGAGGA
TAAAAAGGCGAAAAGAGAGAGCGTCC
Found at i:740022 original size:276 final size:279
Alignment explanation
Indices: 739523--740258 Score: 826
Period size: 276 Copynumber: 2.6 Consensus size: 279
739513 AAGGAAGTGT
* *
739523 GTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGTGTCC
1 GTCCTACTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTT-AAAAG-AAAGGCGTCC
* * ** * *
739588 TGCCCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCC-TTGCAAA-AAGAAAGCATCTTG
63 TGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGT-GGCCTTTG-AAAGAA-AAGGCATCCTG
* * * * *
739651 CTCTTTGAAGACT-GAAAAGTGCCACCAACTTGGGTGGGCTTTAAAAAGAGAAGGCGTCCTGCTC
125 CTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGCATCCTGCTC
* * ** *
739715 TTTGAGGACTGAAAGTGCCACCGGCTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGA-T-
189 TTTAAGGACTGAAAATGCCACCAACTTGTGTGAGCTTTAAAAGGCATCCTGCTCTTTGAGGACTG
*
739778 AAAAAGGCGA-AA-AGAG-AG-A-GC
254 AAAAAGGCCACAATAGAGTAGAAGGC
* *
739799 GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCC
1 GTCCTACTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GA-AAGGCGTCC
*
739864 TGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGCCTTTGAAAGAAAAGGCGTCCTGCTC
63 TGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGCCTTTGAAAGAAAAGGCATCCTGCTC
* * *
739929 TTTGAGGACTGGAAAATGCCACCCACTTGTGTGGGCTTTGAAAAGAAAAAGCATCTTGCTCTTTA
128 TTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGCATCCTGCTCTTTA
** *
739994 AGGACTGGAAAATGCCACCAACTTGTGTGAGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGGAA
193 AGGACT-GAAAATGCCACCAACTTGTGTGAGCTTTAAAAGGCATCCTGCTCTTTGAGGACTGAAA
* * * *
740059 AATGCCACCAACTTGTGTGGGCTTTGGAAGGC
257 AAGGCCA-CAA----T-AGAG---TAGAAGGC
*
740091 GTCCTACTCTTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTT----GAAAGGCGTCCTG
1 GTCCTACTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAGGCGTCCTG
* *
740152 CTCTTTGAGGACTGGAAAATGCCACTAACTTGTGTGGGCTTT--AAG---AGGCATCCTGCTCTT
65 CTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGCCTTTGAAAGAAAAGGCATCCTGCTCTT
*
740212 TGAGGACTGGAAAATGCCACCAACCTGTGTGGGCTTTAAAAAGAAAA
130 TGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAAGAAAA
740259 GGTGTTTATT
Statistics
Matches: 395, Mismatches: 41, Indels: 43
0.82 0.09 0.09
Matches are distributed among these distances:
275 79 0.20
276 141 0.36
277 2 0.01
278 7 0.02
280 2 0.01
281 58 0.15
284 3 0.01
286 53 0.13
287 2 0.01
290 1 0.00
291 4 0.01
292 43 0.11
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (279 bp):
GTCCTACTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAGGCGTCCTGC
TCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGCCTTTGAAAGAAAAGGCATCCTGCTCTTT
GAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGCATCCTGCTCTTTAAGG
ACTGAAAATGCCACCAACTTGTGTGAGCTTTAAAAGGCATCCTGCTCTTTGAGGACTGAAAAAGG
CCACAATAGAGTAGAAGGC
Found at i:740058 original size:55 final size:55
Alignment explanation
Indices: 739797--740252 Score: 565
Period size: 55 Copynumber: 8.0 Consensus size: 55
739787 AAAAGAGAGA
*
739797 GCGTCCTGCTCTTTGAGGACTAGG-AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAG
1 GCGTCCTGCTCTTTGAGGACT-GGAAAATGCCACCAACTTGTGTGGGCTTT---A--A-AAG
*
739858 GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGCCTTTGAAAGAAAAG
1 GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-----AAAAG
*
739918 GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCCACTTGTGTGGGCTTTGAAAAG
1 GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAAAG
* * * *
739974 AAAAAGCATCTTGCTCTTTAAGGACTGGAAAATGCCACCAACTTGTGTGAGCTTTAAAAG
1 -----GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAG
* **
740034 GTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGGAAG
1 GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAG
* * * *
740089 GCGTCCTACTCTTTGAGGA-TTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAG
1 GCGTCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAG
* *
740144 GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACTAACTTGTGTGGGCTTTAAGAG
1 GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAG
* *
740199 GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACCTGTGTGGGCTTTAAAA
1 GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAA
740253 AGAAAAGGTG
Statistics
Matches: 353, Mismatches: 32, Indels: 26
0.86 0.08 0.06
Matches are distributed among these distances:
54 5 0.01
55 185 0.52
56 11 0.03
60 58 0.16
61 91 0.26
63 3 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (55 bp):
GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAG
Found at i:743861 original size:106 final size:107
Alignment explanation
Indices: 743528--743861 Score: 312
Period size: 106 Copynumber: 3.1 Consensus size: 107
743518 CAGTAAACCC
* * * *
743528 AAAGAT-AAAATTATAAAAATATTT-AGAAACAAAGAGAAAATTTGAG--TTTTTTATATAGAAC
1 AAAGATCAAAATTAT-GAAATATTTAAG-AACAAAGAGTAAATTTGAGTTTTTTTTTTAAAGAAC
* * *
743589 GAGGTTAGAGTAT-CTTCTTGAAGTTGTGGGGTTGGAG-TTACCTT
64 GAGGTTAGAGTATCCTT-TTGGAGTAGTGGGGTTGGAGTTTTCC-T
* * * *
743633 AAA-ATCGAAGATTATGAAAATATTTAAGAACAAAAAGTAAATTTAAGATTTTTTTTTTTAAGAA
1 AAAGATC-AAAATTATG-AAATATTTAAGAACAAAGAGTAAATTTGAG-TTTTTTTTTTAAAGAA
* * ** ** * *
743697 -TAGAGTTGGAGTATCCCCTCAGAGTAGTGGAGTTGGAGTTTTTC-
63 CGAG-GTTAGAGTATCCTTTTGGAGTAGTGGGGTTGGAGTTTTCCT
743741 AAAG-TCAAAGATTATGAAATATTTAAGAACAAAGAGTAAATTTGAGTTTTTTTTTTAAAGAACG
1 AAAGATCAAA-ATTATGAAATATTTAAGAACAAAGAGTAAATTTGAGTTTTTTTTTTAAAGAACG
* * *
743805 AGGGTAGATTATCCTTTTGGAGTCGTGGGGTTGGAGTTTTCCT
65 AGGTTAGAGTATCCTTTTGGAGTAGTGGGGTTGGAGTTTTCCT
743848 AAAGAT-AAAATTAT
1 AAAGATCAAAATTAT
743862 ACGAAAAGAA
Statistics
Matches: 180, Mismatches: 34, Indels: 29
0.74 0.14 0.12
Matches are distributed among these distances:
104 2 0.01
105 3 0.02
106 81 0.45
107 41 0.23
108 14 0.08
109 35 0.19
110 4 0.02
ACGTcount: A:0.38, C:0.07, G:0.21, T:0.35
Consensus pattern (107 bp):
AAAGATCAAAATTATGAAATATTTAAGAACAAAGAGTAAATTTGAGTTTTTTTTTTAAAGAACGA
GGTTAGAGTATCCTTTTGGAGTAGTGGGGTTGGAGTTTTCCT
Found at i:744128 original size:194 final size:194
Alignment explanation
Indices: 743712--744142 Score: 464
Period size: 194 Copynumber: 2.2 Consensus size: 194
743702 TTGGAGTATC
* * * *
743712 CCCTCAGAGTAGTGGAGTTGGAGTTTTTCAAAGTCAAAGATTATGAAATATTTAAGAACAAAGAG
1 CCCTCAGAGTAGTGGAGTTAGAGTTTTCCAAAGTCAAAGATTATGAAATACTTAAGAACAAAAAG
* * ** * * *
743777 TAAATTTGAGTTTTTTTTTTAAAGAACGAGGGTAGATTATCCTTTTGGAGTCGTGGGGTTGGAGT
66 TAAAATTGAGTTTTTTTTTTAAAGAACGAGGGTAGAGTATCCCCTT-GAATCGT-GAGTTAGAG-
*
743842 TTTCCTAAAGATAAAATTATACGAAAAGAAAATTTGAGTTTGCTTATGAAGAACGGGATTAGAAG
128 TTTCCTAAAGATAAAATTATACGAAAAGAAAATTTGAGTTTGCTTATGAAGAACAGGATTAGAAG
743907 AT
193 AT
** * * * ** *
743909 CCCATTGGAGTAGTGGGGCTAGAGTTTCCCAAAAGTTGAAGATTATGACAATACTTAGGAACAAA
1 CCC-TCAGAGTAGTGGAGTTAGAGTTTTCC-AAAGTCAAAGATTATGA-AATACTTAAGAACAAA
743974 AAGTAAAATTGAGTTTTTTCTTTT-AAGAAC-AGGGTTAGAGTATCCCCTT-AAT-GT-AGTTAG
63 AAGTAAAATTGAGTTTTTT-TTTTAAAGAACGAGGG-TAGAGTATCCCCTTGAATCGTGAGTTAG
* * * *
744034 AG-TTCCTCAAAGATAAAATTGTA-TAAAGAGAAAATTTGAGTTTTCTTATGAAGAACAGG-TTT
126 AGTTTCCT-AAAGATAAAATTATACGAAA-AGAAAATTTGAGTTTGCTTATGAAGAACAGGATTA
744096 GAAGGAT
189 GAA-GAT
*
744103 CTCCTCAGAGTAATGGAGTTAGAGTTTTCCTAAAGTCAAA
1 C-CCTCAGAGTAGTGGAGTTAGAGTTTTCC-AAAGTCAAA
744143 TTTTTTTTAT
Statistics
Matches: 192, Mismatches: 33, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
193 13 0.07
194 74 0.39
195 8 0.04
197 5 0.03
198 21 0.11
199 19 0.10
200 48 0.25
201 4 0.02
ACGTcount: A:0.35, C:0.10, G:0.23, T:0.32
Consensus pattern (194 bp):
CCCTCAGAGTAGTGGAGTTAGAGTTTTCCAAAGTCAAAGATTATGAAATACTTAAGAACAAAAAG
TAAAATTGAGTTTTTTTTTTAAAGAACGAGGGTAGAGTATCCCCTTGAATCGTGAGTTAGAGTTT
CCTAAAGATAAAATTATACGAAAAGAAAATTTGAGTTTGCTTATGAAGAACAGGATTAGAAGAT
Found at i:747778 original size:13 final size:13
Alignment explanation
Indices: 747760--747784 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
747750 CAAAGATCAG
747760 TGTATCGATACAA
1 TGTATCGATACAA
747773 TGTATCGATACA
1 TGTATCGATACA
747785 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:747864 original size:13 final size:13
Alignment explanation
Indices: 747846--747870 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
747836 ACAAAACTTA
747846 TGTATCGATACAT
1 TGTATCGATACAT
747859 TGTATCGATACA
1 TGTATCGATACA
747871 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:747868 original size:32 final size:33
Alignment explanation
Indices: 747822--747890 Score: 113
Period size: 32 Copynumber: 2.1 Consensus size: 33
747812 GGCCGTAGCT
747822 TACAGTGTATCGATACAAAAC-TTATGTATCGA
1 TACAGTGTATCGATACAAAACTTTATGTATCGA
* *
747854 TACATTGTATCGATACAACACTTTATGTATCGA
1 TACAGTGTATCGATACAAAACTTTATGTATCGA
747887 TACA
1 TACA
747891 AATTGTTGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
32 19 0.56
33 15 0.44
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.33
Consensus pattern (33 bp):
TACAGTGTATCGATACAAAACTTTATGTATCGA
Found at i:754459 original size:28 final size:27
Alignment explanation
Indices: 754409--754490 Score: 87
Period size: 28 Copynumber: 3.0 Consensus size: 27
754399 ATTGAAAAAT
*
754409 AAGAAAGATC-AA-GAAAGCGAAATCAA
1 AAGAAATATCAAAGGAAA-CGAAATCAA
*
754435 CAAGAAATATGAAAGGAAACGAAATACAA
1 -AAGAAATATCAAAGGAAACGAAAT-CAA
* *
754464 AAGAAATTTCAAAGGAAAAGAAATCAA
1 AAGAAATATCAAAGGAAACGAAATCAA
754491 TAAAGAAGAA
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
27 11 0.23
28 29 0.62
29 7 0.15
ACGTcount: A:0.62, C:0.10, G:0.17, T:0.11
Consensus pattern (27 bp):
AAGAAATATCAAAGGAAACGAAATCAA
Found at i:754559 original size:9 final size:9
Alignment explanation
Indices: 754545--754588 Score: 61
Period size: 9 Copynumber: 4.9 Consensus size: 9
754535 CTAATAACTA
*
754545 TTTTTTCTC
1 TTTTTTTTC
754554 TTTTTTTTC
1 TTTTTTTTC
754563 TTTTTTTTC
1 TTTTTTTTC
* *
754572 TTTTTGTTG
1 TTTTTTTTC
754581 TTTTTTTT
1 TTTTTTTT
754589 ATGATAAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.00, C:0.09, G:0.05, T:0.86
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:755372 original size:58 final size:60
Alignment explanation
Indices: 755262--755386 Score: 137
Period size: 58 Copynumber: 2.1 Consensus size: 60
755252 TCCTAAATAA
* **
755262 TAAGCCCATAAATATATGCAAATTGGGCTCCACTATTCTTAGACATGTGAATT-G-GGCTC
1 TAAG-CCATAAATATATGCAAATTAGGCTCCACTATTCTTAGACATACGAATTAGCGGCTC
* * ** * *
755321 TAAGCCATGAATATATGCAACTTAGGCTTTACTCTTCTTAGATATACGAATTAGGCGGCTC
1 TAAGCCATAAATATATGCAAATTAGGCTCCACTATTCTTAGACATACGAATTA-GCGGCTC
755382 TAAGC
1 TAAGC
755387 TTTATTCTTC
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
58 39 0.72
59 4 0.07
60 1 0.02
61 10 0.19
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.31
Consensus pattern (60 bp):
TAAGCCATAAATATATGCAAATTAGGCTCCACTATTCTTAGACATACGAATTAGCGGCTC
Found at i:755685 original size:20 final size:20
Alignment explanation
Indices: 755660--755705 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
755650 TTTCAGTCAT
*
755660 GATACTT-TAAAGTATGTATC
1 GATACTTCTAAACT-TGTATC
755680 GATACTTCCTAAACTTGTATC
1 GATACTT-CTAAACTTGTATC
755701 GATAC
1 GATAC
755706 ACAAGATACG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 7 0.30
21 11 0.48
22 5 0.22
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (20 bp):
GATACTTCTAAACTTGTATC
Found at i:758442 original size:52 final size:51
Alignment explanation
Indices: 758375--758521 Score: 154
Period size: 51 Copynumber: 2.8 Consensus size: 51
758365 TCAATTGTGA
758375 AAAATTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGG
1 AAAATTGGTG-TTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATT-AAGG
* * * **
758428 AAAATTGGTGTTTTGAAAAT-AAAGCTGGGGTTGGAGTATCCCCGATTGTGG
1 AAAATTGGTGTTTTGGAAATAAAATC-GGAGTTGGAGTATCCCCGATTAAGG
*** * *
758479 AAAATCAATGATTTGGAAATAAAAT-TGAGGTTGGAGTATCCCC
1 AAAATTGGTGTTTTGGAAATAAAATCGGA-GTTGGAGTATCCCC
758522 TCGGAGATAA
Statistics
Matches: 78, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
50 1 0.01
51 35 0.45
52 32 0.41
53 10 0.13
ACGTcount: A:0.33, C:0.10, G:0.27, T:0.30
Consensus pattern (51 bp):
AAAATTGGTGTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAGG
Found at i:758581 original size:131 final size:132
Alignment explanation
Indices: 758405--758651 Score: 320
Period size: 131 Copynumber: 1.9 Consensus size: 132
758395 TAAAATCGGA
* * *
758405 GTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAAT-AAAGCTGGGGTTGGAGTATCC
1 GTTGGAGTATCCCCGATTAAAGAAAAATTGGTGTTTTGAAAATAAAATC-GGAGTTGGAGTATCC
** * *
758469 CCGATT-GTGGAAAATCAATGATTTGGAAATAAAATTGAGGTTGGAGTATCCCCTCGGAGATAAC
65 CCGATTAAAGGAAAATCAATGATTTGAAAATAAAACTGAGGTTGGAGTATCCCCTCGGAGATAAC
758533 GGG
130 GGG
* ** *
758536 GTTGGAGTATCCTCGATT-GTGAAAAATTGGTGTTTTTAGAAATAAAATCGGAGTTGGAGTATCC
1 GTTGGAGTATCCCCGATTAAAGAAAAATTGGTGTTTTGA-AAATAAAATCGGAGTTGGAGTATCC
*** *
758600 CCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAACTGAGGTTGGAGTATCC
65 CCGATTAAAGGAAAATCAATGATTTGAAAATAAAACTGAGGTTGGAGTATCC
758652 TCGATTGTGG
Statistics
Matches: 98, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
130 16 0.16
131 41 0.42
132 41 0.42
ACGTcount: A:0.32, C:0.11, G:0.28, T:0.30
Consensus pattern (132 bp):
GTTGGAGTATCCCCGATTAAAGAAAAATTGGTGTTTTGAAAATAAAATCGGAGTTGGAGTATCCC
CGATTAAAGGAAAATCAATGATTTGAAAATAAAACTGAGGTTGGAGTATCCCCTCGGAGATAACG
GG
Found at i:758581 original size:183 final size:183
Alignment explanation
Indices: 758271--758844 Score: 811
Period size: 183 Copynumber: 3.1 Consensus size: 183
758261 CGGAAATAAC
* * * * *
758271 GAGGTTGGAGTATCCCCAATTAT-GAGAAATCAAT-ATTTTGGGAATAAAGCCGGGGTTTGAGTA
1 GAGGTTGGAGTATCCCCGATTGTGGA-AAATCAATGA-TTTGGAAATAAAACCGGGGTTGGAGTA
* *
758334 TCCCCTCGGAGGTAACGGGGTTGGAGTATCCTCAATTGTGAAAAATTGGTGTTTTTGGAAATAAA
64 TCCCCTCGGAGATAACGGGGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTGGAAATAAA
*
758399 ATCGGAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAGCT
129 ATCGGAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAACT
* ** *
758454 GGGGTTGGAGTATCCCCGATTGTGGAAAATCAATGATTTGGAAATAAAATTGAGGTTGGAGTATC
1 GAGGTTGGAGTATCCCCGATTGTGGAAAATCAATGATTTGGAAATAAAACCGGGGTTGGAGTATC
*
758519 CCCTCGGAGATAACGGGGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTAGAAATAAAAT
66 CCCTCGGAGATAACGGGGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAAT
758584 CGGAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAACT
131 CGGAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAACT
* * * *
758637 GAGGTTGGAGTATCCTCGATTGTGGAAAATTAATGTTTTAGAAATAAAACCGGGGTTGGAGTAT-
1 GAGGTTGGAGTATCCCCGATTGTGGAAAATCAATGATTTGGAAATAAAACCGGGGTTGGAGTATC
* *
758701 CCC-C-GATGATTAACGGGGTTGGAGTATCCCCGATTGGGAAAAATTGGTGTTTTTTGGAAATAA
66 CCCTCGGA-GA-TAACGGGGTTGGAGTATCCTCGATTGTGAAAAATTGGTG-TTTTTGGAAATAA
* * *
758764 AATCGGAGTTGGAGTATCCCCGATTATA-GAAAATTAGCGTTTTGAAAATAAAA-T
128 AATCGGAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAACT
* * * *
758818 CAGAGTGGGAATATCCCCAATTGTGGA
1 GAG-GTTGGAGTATCCCCGATTGTGGA
758845 GAATTGAGAA
Statistics
Matches: 353, Mismatches: 32, Indels: 13
0.89 0.08 0.03
Matches are distributed among these distances:
180 2 0.01
181 6 0.02
182 82 0.23
183 260 0.74
184 3 0.01
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.29
Consensus pattern (183 bp):
GAGGTTGGAGTATCCCCGATTGTGGAAAATCAATGATTTGGAAATAAAACCGGGGTTGGAGTATC
CCCTCGGAGATAACGGGGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAAT
CGGAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAACT
Found at i:758685 original size:51 final size:51
Alignment explanation
Indices: 758535--758707 Score: 206
Period size: 52 Copynumber: 3.4 Consensus size: 51
758525 GAGATAACGG
* * *
758535 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTAGAAATAAAATCG-
1 GGTTGGAGTATCCCCGATTGTGGAAAATTGGTG-TTTTAGAAATAAAACCGA
** *
758586 GAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTT-GAAAATAAAACTGA
1 G-GTTGGAGTATCCCCGATT-GTGGAAAATTGGTGTTTTAG-AAATAAAACCGA
* ** *
758639 GGTTGGAGTATCCTCGATTGTGGAAAATTAATGTTTTAGAAATAAAACCGG
1 GGTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTAGAAATAAAACCGA
758690 GGTTGGAGTATCCCCGAT
1 GGTTGGAGTATCCCCGAT
758708 GATTAACGGG
Statistics
Matches: 103, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
51 43 0.42
52 48 0.47
53 12 0.12
ACGTcount: A:0.32, C:0.10, G:0.26, T:0.31
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTAGAAATAAAACCGA
Found at i:758798 original size:53 final size:51
Alignment explanation
Indices: 758718--758840 Score: 131
Period size: 51 Copynumber: 2.4 Consensus size: 51
758708 GATTAACGGG
* * * * *
758718 GTTGGAGTATCCCCGATTGGGAAAAATTGGTGTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGAGAAAAATTAGCG--TTTTGAAAATAAAATCAGA
*
758771 GTTGGAGTATCCCCGATT-ATAGAAAATTAGCGTTTTGAAAATAAAATCAGA
1 GTTGGAGTATCCCCGATTGAGA-AAAATTAGCGTTTTGAAAATAAAATCAGA
* * *
758822 GTGGGAATATCCCCAATTG
1 GTTGGAGTATCCCCGATTG
758841 TGGAGAATTG
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
51 32 0.54
52 1 0.02
53 26 0.44
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.30
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGAGAAAAATTAGCGTTTTGAAAATAAAATCAGA
Found at i:758833 original size:131 final size:129
Alignment explanation
Indices: 758588--758835 Score: 304
Period size: 131 Copynumber: 1.9 Consensus size: 129
758578 TAAAATCGGA
* *
758588 GTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAACTGAGGTTGGAGTATCCT
1 GTTGGAGTATCCCCGATT-AAGGAAAATTGGTGTTTTGAAAATAAAACGGAGGTTGGAGTATCCC
* * * * * * *
758653 CGATTGTGGAAAATTAATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCGATGATTAACGGG
65 CGATTATAGAAAATTAACGTTTTAGAAATAAAACCAGAGTGGGAATATCCCCGATGATTAACGGG
* *
758718 GTTGGAGTATCCCCGATT-GGGAAAAATTGGTGTTTTTTGGAAATAAAATCGGA-GTTGGAGTAT
1 GTTGGAGTATCCCCGATTAAGG-AAAATTGGTG--TTTTGAAAATAAAA-CGGAGGTTGGAGTAT
* *
758781 CCCCGATTATAGAAAATTAGCGTTTT-GAAAATAAAATCAGAGTGGGAATATCCCC
62 CCCCGATTATAGAAAATTAACGTTTTAG-AAATAAAACCAGAGTGGGAATATCCCC
758836 AATTGTGGAG
Statistics
Matches: 100, Mismatches: 13, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
128 2 0.02
129 10 0.10
130 19 0.19
131 66 0.66
132 3 0.03
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (129 bp):
GTTGGAGTATCCCCGATTAAGGAAAATTGGTGTTTTGAAAATAAAACGGAGGTTGGAGTATCCCC
GATTATAGAAAATTAACGTTTTAGAAATAAAACCAGAGTGGGAATATCCCCGATGATTAACGGG
Found at i:761224 original size:34 final size:33
Alignment explanation
Indices: 761181--761245 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 33
761171 AACTTCTTAG
*
761181 ATGTATCGATACAAAGAATAGATGTATCGATATA
1 ATGTATCGATACAAAGAA-AAATGTATCGATATA
*
761215 ATGTATCGATACACAGAAAAATGTATCGATA
1 ATGTATCGATACAAAGAAAAATGTATCGATA
761246 CATTTCCTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 12 0.41
34 17 0.59
ACGTcount: A:0.45, C:0.11, G:0.17, T:0.28
Consensus pattern (33 bp):
ATGTATCGATACAAAGAAAAATGTATCGATATA
Found at i:761303 original size:19 final size:19
Alignment explanation
Indices: 761279--761343 Score: 63
Period size: 19 Copynumber: 3.7 Consensus size: 19
761269 AGCGATACAT
761279 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
761298 TGTATCGAT-----A-TGT-
1 TGTATCGATACAAAACT-TA
*
761311 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
761330 TGTATCGATACAAA
1 TGTATCGATACAAA
761344 TCGCTGAAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 16
0.69 0.02 0.30
Matches are distributed among these distances:
13 10 0.27
14 2 0.05
18 2 0.05
19 23 0.62
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:761314 original size:32 final size:32
Alignment explanation
Indices: 761278--761339 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
761268 TAGCGATACA
761278 TTGTATCGATACAAAACTTATGTATCGATATG
1 TTGTATCGATACAAAACTTATGTATCGATATG
*
761310 TTGTATCGATACAACACTTATGTATCGATA
1 TTGTATCGATACAAAACTTATGTATCGATA
761340 CAAATCGCTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.37
Consensus pattern (32 bp):
TTGTATCGATACAAAACTTATGTATCGATATG
Found at i:761416 original size:11 final size:11
Alignment explanation
Indices: 761400--761444 Score: 56
Period size: 12 Copynumber: 3.9 Consensus size: 11
761390 ATTTGGATAA
761400 ATTTTTTTTTT
1 ATTTTTTTTTT
761411 ATTTTTATTTATT
1 ATTTTT-TTT-TT
761424 -TTTTATTTTTT
1 ATTTT-TTTTTT
761435 ATTTTTTTTT
1 ATTTTTTTTT
761445 CAAACACTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
11 13 0.43
12 14 0.47
13 3 0.10
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (11 bp):
ATTTTTTTTTT
Found at i:761425 original size:17 final size:17
Alignment explanation
Indices: 761402--761444 Score: 70
Period size: 17 Copynumber: 2.5 Consensus size: 17
761392 TTGGATAAAT
761402 TTTTTTTTTA-TTTTTA
1 TTTTTTTTTATTTTTTA
761418 TTTATTTTTTATTTTTTA
1 TTT-TTTTTTATTTTTTA
761436 TTTTTTTTT
1 TTTTTTTTT
761445 CAAACACTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.12
17 13 0.52
18 9 0.36
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (17 bp):
TTTTTTTTTATTTTTTA
Found at i:761428 original size:7 final size:7
Alignment explanation
Indices: 761400--761441 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
761390 ATTTGGATAA
761400 ATTTTTT
1 ATTTTTT
761407 -TTTTATT
1 ATTTT-TT
761414 -TTTATTT
1 ATTT-TTT
761421 ATTTTTT
1 ATTTTTT
761428 ATTTTTT
1 ATTTTTT
761435 ATTTTTT
1 ATTTTTT
761442 TTTCAAACAC
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
6 4 0.12
7 24 0.75
8 4 0.12
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
ATTTTTT
Found at i:762394 original size:29 final size:28
Alignment explanation
Indices: 762250--762395 Score: 90
Period size: 29 Copynumber: 5.2 Consensus size: 28
762240 TTGAGGACTG
762250 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * * * *
762278 AAGAGGTGTCCTGC-TCTT-TGAGGAC-TG
1 AA-AGGTG-CCACCAACTTGTGTGGGCTTT
**
762305 AAAAATGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** *
762333 GAAAGGTGTCCTGC-TCTT-TG-GGGAC-TT
1 -AAAGGTG-CCACCAACTTGTGTGGG-CTTT
762360 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
762388 AAGAGGTG
1 AA-AGGTG
762396 TCCTACTCTT
Statistics
Matches: 83, Mismatches: 22, Indels: 25
0.64 0.17 0.19
Matches are distributed among these distances:
25 6 0.07
26 16 0.19
27 16 0.19
28 18 0.22
29 21 0.25
30 6 0.07
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (28 bp):
AAAGGTGCCACCAACTTGTGTGGGCTTT
Found at i:762406 original size:29 final size:28
Alignment explanation
Indices: 762319--762406 Score: 78
Period size: 29 Copynumber: 3.1 Consensus size: 28
762309 ATGCCACCAA
*
762319 CTTGTGTGGGCTTTGAAAGGTGTCCTGCT
1 CTTGTGTGGGCTTT-AAAGGTGTCCTACT
*
762348 CTT-TG-GGGAC-TTAAAGGTG-CC-ACCAA
1 CTTGTGTGGG-CTTTAAAGGTGTCCTA-C-T
762374 CTTGTGTGGGCTTTAAGAGGTGTCCTACT
1 CTTGTGTGGGCTTTAA-AGGTGTCCTACT
762403 CTTG
1 CTTG
762407 GAGGACTAGA
Statistics
Matches: 47, Mismatches: 3, Indels: 18
0.69 0.04 0.26
Matches are distributed among these distances:
25 3 0.06
26 10 0.21
27 8 0.17
28 10 0.21
29 12 0.26
30 3 0.06
31 1 0.02
ACGTcount: A:0.16, C:0.19, G:0.31, T:0.34
Consensus pattern (28 bp):
CTTGTGTGGGCTTTAAAGGTGTCCTACT
Found at i:762967 original size:28 final size:28
Alignment explanation
Indices: 762936--763077 Score: 73
Period size: 28 Copynumber: 5.1 Consensus size: 28
762926 TTGAGGACTA
762936 GAAAATGCCACCAACTTGTGTGGGCTTT
1 GAAAATGCCACCAACTTGTGTGGGCTTT
* * * * * * *
762964 G-AAA-GGCATTCTACTCTTTGAGGAC-TG
1 GAAAATGCCA-CCAACT-TGTGTGGGCTTT
762991 GAAAATGCCACCAACTTGTGTGGGCTTT
1 GAAAATGCCACCAACTTGTGTGGGCTTT
* ** * * *
763019 G-AAA-GGCATCCTGCTCTTTGAGGAC--T
1 GAAAATGCCA-CCAACT-TGTGTGGGCTTT
763045 GAAAAATGCCACCAACTTGTGTGGGCTTT
1 G-AAAATGCCACCAACTTGTGTGGGCTTT
763074 GAAA
1 GAAA
763078 GGAGAAGGCG
Statistics
Matches: 76, Mismatches: 26, Indels: 24
0.60 0.21 0.19
Matches are distributed among these distances:
26 8 0.11
27 28 0.37
28 32 0.42
29 8 0.11
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (28 bp):
GAAAATGCCACCAACTTGTGTGGGCTTT
Found at i:763146 original size:60 final size:60
Alignment explanation
Indices: 762176--764346 Score: 2382
Period size: 55 Copynumber: 37.3 Consensus size: 60
762166 ATAAAGTGTA
* *
762176 TCCTGCTCTTTGAGGACT-AAAAAGTGCCACCAACTCGTGTAGGG-TTT----G-AAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGT-GGGCTTTAAAAGAAAAGGCG
* *
762231 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT--AAG---AGGTG
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* *
762286 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTT----G-AAAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * *
762341 TCCTGCTCTTTGGGGACT-TAAAGGTGCCACCAACTTGTGTGGGCTTT--AAG---AGGTG
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * * * *
762396 TCCTACTCTTGGAGGACTAGAAAATGCCACTAACTTGTGTGGGCTTT----G-AATGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * *
762451 TCCTACTCTTCGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT----G-AAAGGGG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * * *
762506 TCCTCCTCTTTGGGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
* ** *
762567 TCCTGCTTTTTGAGGACT-GAAGGTGCCACCAACTTAG-GTGGGCTTTAAAAGAAAAGGCA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTT-GTGTGGGCTTTAAAAGAAAAGGCG
* ** * *
762626 TCCCGCTCTTTGAGGACT-GAAGGTGCCACCAACTTTTGTGGGCTTTAAAAGAAAAGGCA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* ** * *
762685 TCCCGCTCTTTGAGGACT-GAAGGTGCCACAAACTTGTGTGGGCTTT--AAG--AA-GTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * * *
762739 TCCTGCTATTTGGGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
* * *
762800 TCCTGCCCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT----G-AAAGGCA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * *
762855 TCCTGCTCTTTGAGGACTGGAAAGGTGCCACCAACTTATGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
* *
762917 TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT----G-AAAGGCA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * *
762972 TTCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT----G-AAAGGCA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * *
763027 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
** *
763088 TCCTGCTCTTTGAGGACT-GAAGGTGCCACTAACTTGTGTGGGCTTTAAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
* *
763148 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
* ** *
763209 TCCTGCTCTTTAAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTT----G-AAAGGCA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * *
763264 TCCTGCTCTTTGAGGACTGGAAAGGTGCCACCAACTTGAGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
* * *
763326 TCCTACTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT----G-AAAGGCA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * *
763381 TTCTACTATTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT----G-AAAGGCA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* *
763436 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
* ** **
763497 TCCTGCTTTTTGAGGACT-GAAGGTGCCACTGACTTGTGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* *
763556 TCTTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* *
763616 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
* ** **
763677 TCCTGCTTTTTGAATACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
* * *
763737 TCCTGCTCTTTGAGGACTGGAAAATTCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
* *
763798 TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT----G-AAAGGCA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * *
763853 TCCTGCTCTTTGAGGACTGGAAAATGCCCCCAACTTGTGTGGGCTTTGAAAGGAGAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
** *
763914 TCCTGCTCTTTGAGGACT-GAAGGTGCCACTAACTTGTGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * * * *
763973 TCATGCTTTTTGAGGATTAGAAAATGCCACCAACTTGTGTAGGCTTTGAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * * *
764033 TCTTACTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
**
764094 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
764154 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCG
764215 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * ** *
764275 TCCTACTTTTTGAGGACT-GAAGTTGCCACCAACTTGTGTGGGCTTT--AA-AAAA--TG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
764329 TCCTGCTCTTTGAGGACT
1 TCCTGCTCTTTGAGGACT
764347 AAAAGGTGAA
Statistics
Matches: 1861, Mismatches: 185, Indels: 141
0.85 0.08 0.06
Matches are distributed among these distances:
53 2 0.00
54 46 0.02
55 596 0.32
56 59 0.03
57 7 0.00
58 3 0.00
59 190 0.10
60 425 0.23
61 474 0.25
62 59 0.03
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (60 bp):
TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
Found at i:763376 original size:28 final size:28
Alignment explanation
Indices: 763345--763486 Score: 80
Period size: 28 Copynumber: 5.1 Consensus size: 28
763335 TTGAGGACTA
763345 GAAAATGCCACCAACTTGTGTGGGCTTT
1 GAAAATGCCACCAACTTGTGTGGGCTTT
* * * * * * *
763373 G-AAA-GGCATTCTACTATTTGAGGAC-TG
1 GAAAATGCCA-CCAACT-TGTGTGGGCTTT
763400 GAAAATGCCACCAACTTGTGTGGGCTTT
1 GAAAATGCCACCAACTTGTGTGGGCTTT
* ** * * * *
763428 G-AAA-GGCATCCTGCTCTTTGAGGAC-TG
1 GAAAATGCCA-CCAACT-TGTGTGGGCTTT
763455 GAAAATGCCACCAACTTGTGTGGGCTTT
1 GAAAATGCCACCAACTTGTGTGGGCTTT
763483 GAAA
1 GAAA
763487 GGAGAAGGCG
Statistics
Matches: 76, Mismatches: 28, Indels: 20
0.61 0.23 0.16
Matches are distributed among these distances:
26 6 0.08
27 30 0.39
28 34 0.45
29 6 0.08
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (28 bp):
GAAAATGCCACCAACTTGTGTGGGCTTT
Found at i:770633 original size:79 final size:80
Alignment explanation
Indices: 770451--770723 Score: 241
Period size: 79 Copynumber: 3.5 Consensus size: 80
770441 GAAATTTAAT
* * ** * * * **
770451 ATTTTGGAGATAATAA-CGG-GTTGGAGTGTCCCCTTGAAAATAACGGGGCTGGAGTATCCCCGG
1 ATTTTGGAAATAA-AATCGGAGTTGGAGTATCCCCGAGGAAATAACGAGGTTGGAGTATCCCCAA
* * *
770514 TTGTGAGAAATCGATG
65 TTATGAAAAATCAATG
* * * ** *
770530 A-TTAGAAAAAAAAATCAGGA-TTGGAGTATCCCCTCGGAAATAATGAGGTTGGAGTATCCCCAA
1 ATTTTGGAAATAAAATC-GGAGTTGGAGTATCCCCGAGGAAATAACGAGGTTGGAGTATCCCCAA
*
770593 TTATGAGAAATCAAT-
65 TTATGAAAAATCAATG
* * * * *
770608 ATTTTGGGAATAAAGTCGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCTCAAT
1 ATTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGAGGAAATAACGAGGTTGGAGTATCCCCAAT
***
770673 TATGAAAAATTGGTG
66 TATGAAAAATCAATG
*
770688 TTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGA
1 ATTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGA
770724 TTAAAGGAAA
Statistics
Matches: 155, Mismatches: 33, Indels: 11
0.78 0.17 0.06
Matches are distributed among these distances:
77 2 0.01
78 11 0.07
79 110 0.71
80 32 0.21
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.27
Consensus pattern (80 bp):
ATTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGAGGAAATAACGAGGTTGGAGTATCCCCAAT
TATGAAAAATCAATG
Found at i:770745 original size:52 final size:51
Alignment explanation
Indices: 770655--770824 Score: 205
Period size: 52 Copynumber: 3.3 Consensus size: 51
770645 GAAATAACGA
* * * *
770655 GGTTGGAGTATCCTCAATTATGAAAAATTGGTGTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGGAAAATTGGTG-TTTTGGAAATAAAACCGG
* * * *
770707 AGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAGCCGG
1 GGTTGGAGTATCCCCGATT-ATGGAAAATTGGTGTTTTGGAAATAAAACCGG
* * * *
770759 GGTTGGAGTATCCCCGATTGTGGAAAATCGATGATTTGGAAATAAAACCGG
1 GGTTGGAGTATCCCCGATTATGGAAAATTGGTGTTTTGGAAATAAAACCGG
*
770810 GGTTGAAGTATCCCC
1 GGTTGGAGTATCCCC
770825 TCGGAGATAA
Statistics
Matches: 100, Mismatches: 17, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
51 39 0.39
52 49 0.49
53 12 0.12
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.29
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGGAAAATTGGTGTTTTGGAAATAAAACCGG
Found at i:770810 original size:51 final size:52
Alignment explanation
Indices: 770690--770824 Score: 173
Period size: 51 Copynumber: 2.6 Consensus size: 52
770680 AATTGGTGTT
* * * * *
770690 TTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGT
1 TTTGGAAATAAAACCGGGGTTGGAGTATCCCCGATTAAAGGAAAATCGATGA
* * **
770742 TTTGAAAATAAAGCCGGGGTTGGAGTATCCCCGATT-GTGGAAAATCGATGA
1 TTTGGAAATAAAACCGGGGTTGGAGTATCCCCGATTAAAGGAAAATCGATGA
*
770793 TTTGGAAATAAAACCGGGGTTGAAGTATCCCC
1 TTTGGAAATAAAACCGGGGTTGGAGTATCCCC
770825 TCGGAGATAA
Statistics
Matches: 71, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
51 39 0.55
52 32 0.45
ACGTcount: A:0.33, C:0.13, G:0.27, T:0.27
Consensus pattern (52 bp):
TTTGGAAATAAAACCGGGGTTGGAGTATCCCCGATTAAAGGAAAATCGATGA
Found at i:770850 original size:79 final size:80
Alignment explanation
Indices: 770756--770904 Score: 201
Period size: 79 Copynumber: 1.9 Consensus size: 80
770746 AAAATAAAGC
* * * *
770756 CGGGGTTGGAGTATCCCCGATTGTGGAAAATCGATG-ATTTGGAAATAAAACCGGGGTTGAAGTA
1 CGGGGTTGGAGTATCCCAGATTGTGAAAAATCGATGTATTTAGAAATAAAACCGGAGTTGAAGTA
770820 TCCCCTCGGAGATAA
66 TCCCCTCGGAGATAA
* * * * * *
770835 CGGGGTTGGAGTATCCTAGATTGTGAAAAATTGGTGTTTTTAGAAATAAAATCGGAGTTGGAGTA
1 CGGGGTTGGAGTATCCCAGATTGTGAAAAATCGATGTATTTAGAAATAAAACCGGAGTTGAAGTA
770900 TCCCC
66 TCCCC
770905 GATTAAAGGA
Statistics
Matches: 59, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
79 31 0.53
80 28 0.47
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.28
Consensus pattern (80 bp):
CGGGGTTGGAGTATCCCAGATTGTGAAAAATCGATGTATTTAGAAATAAAACCGGAGTTGAAGTA
TCCCCTCGGAGATAA
Found at i:770884 original size:183 final size:181
Alignment explanation
Indices: 770576--771119 Score: 720
Period size: 183 Copynumber: 3.0 Consensus size: 181
770566 GAAATAATGA
* * **
770576 GGTTGGAGTATCCCCAATTAT-GAGAAATCAAT-ATTTTGGGAATAAAGTCGGGGTTGGAGTATC
1 GGTTGGAGTATCCCCGATTATGGA-AAATCAATGA-TTTGGAAATAAAACCGGGGTTGGAGTATC
* * *
770639 CCCGATGAAATAACGAGGTTGGAGTATCCTCA-ATTATGAAAAATTGGTGTTTTTGGAAATAAAA
64 CCC--CGAAATAACGGGGTTGGAGTATCCT-AGATTGTGAAAAATTGGTGTTTTTGGAAATAAAA
*
770703 TCGGAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAGCCGG
126 TCGGAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAACCGG
* * *
770759 GGTTGGAGTATCCCCGATTGTGGAAAATCGATGATTTGGAAATAAAACCGGGGTTGAAGTATCCC
1 GGTTGGAGTATCCCCGATTATGGAAAATCAATGATTTGGAAATAAAACCGGGGTTGGAGTATCCC
* *
770824 CTCGGAGATAACGGGGTTGGAGTATCCTAGATTGTGAAAAATTGGTGTTTTTAGAAATAAAATCG
66 C-C-GAAATAACGGGGTTGGAGTATCCTAGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCG
*
770889 GAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAATCGG
129 GAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAACCGG
** * * *
770942 GGTTGGAGTATCCTTGATTATGGAAAATTAATGTTTTAGAAATAAAACCGGGGTTGGAGTAT-CC
1 GGTTGGAGTATCCCCGATTATGGAAAATCAATGATTTGGAAATAAAACCGGGGTTGGAGTATCCC
* ** * *
771006 CCGATTATTAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGATATTTTTTGGAAATAAAATC
66 CCGA--AATAACGGGGTTGGAGTATCCTAGATTGTGAAAAATTGGT-GTTTTTGGAAATAAAATC
* * *
771071 GGAGTTGGAGTATCCCCGATTATA-GAAAATTAGCGTTTTGAAAATAAAA
128 GGAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAA
771120 TCGGAGTGGA
Statistics
Matches: 321, Mismatches: 33, Indels: 15
0.87 0.09 0.04
Matches are distributed among these distances:
180 2 0.01
181 1 0.00
182 62 0.19
183 253 0.79
184 3 0.01
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.30
Consensus pattern (181 bp):
GGTTGGAGTATCCCCGATTATGGAAAATCAATGATTTGGAAATAAAACCGGGGTTGGAGTATCCC
CCGAAATAACGGGGTTGGAGTATCCTAGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCGGA
GTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAACCGG
Found at i:771012 original size:51 final size:51
Alignment explanation
Indices: 770835--771013 Score: 225
Period size: 52 Copynumber: 3.5 Consensus size: 51
770825 TCGGAGATAA
** * *
770835 CGGGGTTGGAGTATCCTAGATTGTGAAAAATTGGTGTTTTTAGAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTATGGAAAATTGGTG-TTTTAGAAATAAAAT
* *
770887 CGGAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTT-GAAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATT-ATGGAAAATTGGTGTTTTAG-AAATAAAAT
** ** *
770939 CGGGGTTGGAGTATCCTTGATTATGGAAAATTAATGTTTTAGAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATTATGGAAAATTGGTGTTTTAGAAATAAAAT
770990 CGGGGTTGGAGTATCCCCGATTAT
1 CGGGGTTGGAGTATCCCCGATTAT
771014 TAACGGGGTT
Statistics
Matches: 109, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
51 46 0.42
52 52 0.48
53 11 0.10
ACGTcount: A:0.32, C:0.09, G:0.26, T:0.32
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATTATGGAAAATTGGTGTTTTAGAAATAAAAT
Found at i:771086 original size:80 final size:78
Alignment explanation
Indices: 770939--771093 Score: 220
Period size: 80 Copynumber: 2.0 Consensus size: 78
770929 AAAATAAAAT
** * *
770939 CGGGGTTGGAGTATCCTTGATTATGGAAAATTAATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTAATGTTTTAGAAATAAAACCGGAGTTGGAGTAT
771004 CCCCGATTATTAA
66 CCCCGATTATTAA
* * * *
771017 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGATATTTTTTGGAAATAAAATCGGAGTTGGAGT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATT-A-ATGTTTTAGAAATAAAACCGGAGTTGGAGT
771082 ATCCCCGATTAT
64 ATCCCCGATTAT
771094 AGAAAATTAG
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
78 28 0.42
79 1 0.01
80 38 0.57
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.32
Consensus pattern (78 bp):
CGGGGTTGGAGTATCCCCGATTATGAAAAATTAATGTTTTAGAAATAAAACCGGAGTTGGAGTAT
CCCCGATTATTAA
Found at i:771101 original size:53 final size:51
Alignment explanation
Indices: 771021--771126 Score: 133
Period size: 53 Copynumber: 2.0 Consensus size: 51
771011 TATTAACGGG
* ** *
771021 GTTGGAGTATCCCCGATTGTGAAAAATTGATATTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGAAAAATT-A-ACGTTTTGAAAATAAAATCGGA
*
771074 GTTGGAGTATCCCCGATTAT-AGAAAATTAGCGTTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGA-AAAATTAACGTTTTGAAAATAAAATCGGA
771125 GT
1 GT
771127 GGAATAACCT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
51 20 0.43
52 2 0.04
53 25 0.53
ACGTcount: A:0.35, C:0.10, G:0.23, T:0.32
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTATGAAAAATTAACGTTTTGAAAATAAAATCGGA
Found at i:773523 original size:13 final size:13
Alignment explanation
Indices: 773505--773530 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
773495 CAAAGAATAG
773505 ATGTATCGATACA
1 ATGTATCGATACA
773518 ATGTATCGATACA
1 ATGTATCGATACA
773531 TAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:773527 original size:34 final size:33
Alignment explanation
Indices: 773484--773550 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 33
773474 AACTTCCTAG
*
773484 ATGTATCGATACAAAGAATAGATGTATCGATACA
1 ATGTATCGATACAAAGAA-AAATGTATCGATACA
*
773518 ATGTATCGATACATAGAAAAATGTATCGATACA
1 ATGTATCGATACAAAGAAAAATGTATCGATACA
773551 TTTCCTTGGC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 14 0.45
34 17 0.55
ACGTcount: A:0.45, C:0.12, G:0.16, T:0.27
Consensus pattern (33 bp):
ATGTATCGATACAAAGAAAAATGTATCGATACA
Found at i:773606 original size:19 final size:19
Alignment explanation
Indices: 773582--773646 Score: 79
Period size: 19 Copynumber: 3.7 Consensus size: 19
773572 AGCAAGACAT
773582 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
773601 TGTATCGATAC---A--T-
1 TGTATCGATACAAAACTTA
*
773614 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
773633 TGTATCGATACAAA
1 TGTATCGATACAAA
773647 TCGCTGAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
13 11 0.28
14 1 0.03
16 2 0.05
18 1 0.03
19 24 0.62
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.32
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:773619 original size:13 final size:13
Alignment explanation
Indices: 773601--773625 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
773591 ACAAAACTTA
773601 TGTATCGATACAT
1 TGTATCGATACAT
773614 TGTATCGATACA
1 TGTATCGATACA
773626 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:773619 original size:32 final size:32
Alignment explanation
Indices: 773578--773644 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
773568 TCCTAGCAAG
773578 ACATTGTATCGATACAAAACTTATGTATCGAT
1 ACATTGTATCGATACAAAACTTATGTATCGAT
*
773610 ACATTGTATCGATACAACACTTATGTATCGAT
1 ACATTGTATCGATACAAAACTTATGTATCGAT
773642 ACA
1 ACA
773645 AATCGCTGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (32 bp):
ACATTGTATCGATACAAAACTTATGTATCGAT
Found at i:773746 original size:4 final size:4
Alignment explanation
Indices: 773739--773773 Score: 54
Period size: 4 Copynumber: 8.8 Consensus size: 4
773729 TTTTTTAATT
773739 TTTA TTTA TTTA TTTA TTTA TTTTA TTT- TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTT
773774 TTCAAACACT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 3 0.10
4 22 0.76
5 4 0.14
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (4 bp):
TTTA
Found at i:773774 original size:12 final size:12
Alignment explanation
Indices: 773729--773774 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
773719 GATAAAATTT
*
773729 TTTTTTAATTT-
1 TTTTTTATTTTA
*
773740 TTATTTA-TTTA
1 TTTTTTATTTTA
773751 TTTATTTATTTTA
1 TTT-TTTATTTTA
773764 TTTTTTATTTT
1 TTTTTTATTTT
773775 TCAAACACTC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
10 3 0.10
11 8 0.27
12 12 0.40
13 7 0.23
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (12 bp):
TTTTTTATTTTA
Found at i:775563 original size:61 final size:61
Alignment explanation
Indices: 775488--775602 Score: 176
Period size: 61 Copynumber: 1.9 Consensus size: 61
775478 AATACCTTCT
*
775488 TAAAGTCCATGACTCAGTGGCAATCTCTTCTCAAAGCCCACGAATCAGTGGCATTTTATCC
1 TAAAGTCCACGACTCAGTGGCAATCTCTTCTCAAAGCCCACGAATCAGTGGCATTTTATCC
* * * * *
775549 TAAAGTCCACGACTCAGTGGCATTTTCTTTTCAAAGTCCACGACTCAGTGGCAT
1 TAAAGTCCACGACTCAGTGGCAATCTCTTCTCAAAGCCCACGAATCAGTGGCAT
775603 CAAAGTCCAC
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
61 48 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (61 bp):
TAAAGTCCACGACTCAGTGGCAATCTCTTCTCAAAGCCCACGAATCAGTGGCATTTTATCC
Found at i:775566 original size:30 final size:31
Alignment explanation
Indices: 775483--775602 Score: 152
Period size: 31 Copynumber: 3.9 Consensus size: 31
775473 CTTCAAATAC
* * * *
775483 CTTCTTAAAGTCCATGACTCAGTGGCAATCT
1 CTTCTCAAAGTCCACGACTCAGTGGCATTTT
* *
775514 CTTCTCAAAGCCCACGAATCAGTGGCATTTT
1 CTTCTCAAAGTCCACGACTCAGTGGCATTTT
* *
775545 ATCCT-AAAGTCCACGACTCAGTGGCATTTT
1 CTTCTCAAAGTCCACGACTCAGTGGCATTTT
*
775575 CTTTTCAAAGTCCACGACTCAGTGGCAT
1 CTTCTCAAAGTCCACGACTCAGTGGCAT
775603 CAAAGTCCAC
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
30 25 0.33
31 50 0.67
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.30
Consensus pattern (31 bp):
CTTCTCAAAGTCCACGACTCAGTGGCATTTT
Found at i:775622 original size:23 final size:23
Alignment explanation
Indices: 775579--775624 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
775569 CATTTTCTTT
*
775579 TCAAAGTCCACGACTCAGTGGCA
1 TCAAAGTCCACAACTCAGTGGCA
775602 TCAAAGTCCACAACCTC-GTGGCA
1 TCAAAGTCCACAA-CTCAGTGGCA
775625 CCTTGATCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 18 0.86
24 3 0.14
ACGTcount: A:0.30, C:0.33, G:0.20, T:0.17
Consensus pattern (23 bp):
TCAAAGTCCACAACTCAGTGGCA
Found at i:775839 original size:100 final size:98
Alignment explanation
Indices: 775604--776490 Score: 660
Period size: 100 Copynumber: 8.9 Consensus size: 98
775594 CAGTGGCATC
* * *
775604 AAAGTCCACAAC-CTCGTGGCACCTTGATCCTTTCAAAGTCCACAACTCCGTGGCA-C-TTTCTT
1 AAAGTCCACAACTC-CGTGGCACCTT--TTCTTTTAAAGTCCACAACTCCGTGGCACCTTTTCCT
*
775666 TTCAAAGCCCACAAC-TCAGTGGCACTCTTTTTCCCTTTT
63 TTCAAAGTCCACAACTTC-GTGGCAC-CTTTTT--CTTTT
* *
775705 AAAGTCCACAACCCCGTGGCACCTTGTTCCTTTT-AAGTCCACAACTCCGTGGCACCTTTTTCTT
1 AAAGTCCACAACTCCGTGGCACCTT-TT-CTTTTAAAGTCCACAACTCCGTGGCACC-TTTTCCT
* * * *
775769 TTTAAAGCCCACAACTTCATGGCGCCTTTTTCTTTT
63 TTCAAAGTCCACAACTTCGTGGCACCTTTTTCTTTT
* * * * *
775805 CAAAGCCCACCACTCCGTGGCACCTTTTCTTTTTAAGTCCACGACCCCGTGGCACCTTGTTCCTT
1 -AAAGTCCACAACTCCGTGGCACCTTTTCTTTTAAAGTCCACAACTCCGTGGCACCTT-TTCCTT
*
775870 TCAAAGTCCACAACTCCGTGGCACC---TTCTTTT
64 TCAAAGTCCACAACTTCGTGGCACCTTTTTCTTTT
* * * * *
775902 CAAAGCCCATAACTCCGTGGCACTCTTTTTCCCGTTTAAAGTCCACAACCCCGGGGCACCTTGTT
1 -AAAGTCCACAACTCCGTGGCAC-C-TTTT--CTTTTAAAGTCCACAACTCCGTGGCACCTT-TT
* * * * * *
775967 CCTTT-TAAGTCCACGACTCCGTGGCACC--TTCCATTC
60 CCTTTCAAAGTCCACAACTTCGTGGCACCTTTTTCTTTT
* * *
776003 AAAGTCCGCGACTCCGTGGCACC--TTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 AAAGTCCACAACTCCGTGGCACCTTTTCTTTT-AAAGTCCACAACTCCGTGGCAC-C-TTTT-CC
* *
776066 TTTTAAAGTCCACAAC-TCTGTGGCACCTTGTTCCTTTT
62 TTTCAAAGTCCACAACTTC-GTGGCACCTT-TTTCTTTT
* * * * * *
776104 -AAGTCCACGACTCCGTGGCACC-TTCCTTTCAAAGTCCGCGACTCCGTGGCACC--TTCTTTTC
1 AAAGTCCACAACTCCGTGGCACCTTTTCTTTTAAAGTCCACAACTCCGTGGCACCTTTTCCTTTC
* *
776165 AAAGCCCACAAC-TCTGCGGCACTCTTTTTCCATTTT
66 AAAGTCCACAACTTC-GTGGCAC-CTTTTT-C-TTTT
* * *
776201 AAAGTCGACAACTCCGTGGCACCTTGTTCCTTTT-AAGTCCACGACTCCGTGGCACC--TTCTTT
1 AAAGTCCACAACTCCGTGGCACCTT-TT-CTTTTAAAGTCCACAACTCCGTGGCACCTTTTCCTT
* * *
776263 TCAGAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
64 TCAAAGTCCACAACTTCGTGGCAC-CTTTTT--CTTTT
* * * * * * *
776301 AAAGTCTACAACCCCATGGCACCTTGTTCCTTTAAAGTCCACGACTCCATGGCACC--TTCCATT
1 AAAGTCCACAACTCCGTGGCACCTT-TTCTTTTAAAGTCCACAACTCCGTGGCACCTTTTCCTTT
* * *
776364 CAAAGTCCGCGACTCCGTGGCACC---TTCTTTT
65 CAAAGTCCACAACTTCGTGGCACCTTTTTCTTTT
* * * *
776395 CAAAGCCCACAACTCCGTGGCACTTTTTTTCCCTTTTAAAGCCCACAACTCCGTGGCACCTTAAT
1 -AAAGTCCACAACTCCGTGGCAC--CTTTT--CTTTTAAAGTCCACAACTCCGTGGCACCTT-TT
* *
776460 CCTTT-TAAGTCCACAACTTCGTGGCATCTTT
60 CCTTTCAAAGTCCACAACTTCGTGGCACCTTT
776491 CACCCTTTTT
Statistics
Matches: 654, Mismatches: 87, Indels: 88
0.79 0.10 0.11
Matches are distributed among these distances:
94 9 0.01
95 63 0.10
96 15 0.02
97 42 0.06
98 63 0.10
99 19 0.03
100 298 0.46
101 111 0.17
102 7 0.01
103 25 0.04
104 2 0.00
ACGTcount: A:0.20, C:0.35, G:0.14, T:0.31
Consensus pattern (98 bp):
AAAGTCCACAACTCCGTGGCACCTTTTCTTTTAAAGTCCACAACTCCGTGGCACCTTTTCCTTTC
AAAGTCCACAACTTCGTGGCACCTTTTTCTTTT
Found at i:776030 original size:131 final size:131
Alignment explanation
Indices: 775602--776485 Score: 887
Period size: 131 Copynumber: 6.7 Consensus size: 131
775592 CTCAGTGGCA
* *
775602 TCAAAGTCCACAAC-CTCGTGGCACCTTGATCCTTTCAAAGTCCACAACTCCGTGGCA--C--TT
1 TCAAAGTCCACAACTC-CGTGGCACC-T--TCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTT
* * * * *
775662 T--CTTTTCAAAGCCCACAACTCAGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACCCCGTGGC
62 TCCCTTTT-AAAGTCCACAACTCCGTGGCAC-CTTGTT-CCTTTT-AAGTCCACGACTCCGTGGC
775725 ACCTTGTTCCTT
123 ACC---TTCCTT
* * * * *
775737 T-TAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTTCATGGCGC-CTTTTT
1 TCAAAGTCCACAACTCCGTGGCACC---TTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTT
* * * *
775800 --CTTTTCAAAGCCCACCACTCCGTGGCACCTT-TTCTTTTTAAGTCCACGACCCCGTGGCACCT
63 CCCTTTT-AAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACC-
775862 TGTTCCTT
126 --TTCCTT
*
775870 TCAAAGTCCACAACTCCGTGGCACCTTCTTTTCAAAGCCCATAACTCCGTGGCACTCTTTTTCCC
1 TCAAAGTCCACAACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
* * * *
775935 GTTTAAAGTCCACAACCCCGGGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCA
66 TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCT
776000 T
131 T
* *
776001 TCAAAGTCCGCGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TCAAAGTCCACAACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
*
776066 TTTTAAAGTCCACAACTCTGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCT
66 TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCT
776131 T
131 T
* * * * *
776132 TCAAAGTCCGCGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCTGCGGCACTCTTTTTCCA
1 TCAAAGTCCACAACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
* *
776197 TTTTAAAGTCGACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCTT
66 TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCT
776262 T
131 T
* * * * * *
776263 TCAGAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT-AAAGTCTACAACCCCATGGCAC-CTT
1 TCAAAGTCCACAACTCCGTGGCAC-C---TT--CTTTTCAAAGCCCACAACTCCGTGGCACTCTT
* * * ** *
776326 GTT-CC-TTTAAAGTCCACGACTCCATGGCACC---TTCCATTCAAAGTCCGCGACTCCGTGGCA
60 TTTCCCTTTTAAAGTCCACAACTCCGTGGCACCTTGTTCC-TTTTAAGTCCACGACTCCGTGGCA
*
776386 CCTTCTTT
124 CCTTCCTT
* *
776394 TCAAAGCCCACAACTCCGTGGCA-CTTTTTTTCCCTTTTAAAGCCCACAACTCCGTGGCAC-CTT
1 TCAAAGTCCACAACTCCGTGGCACCTTCTTTT--C----AAAGCCCACAACTCCGTGGCACTCTT
** *
776457 AAT-CCTTTT-AAGTCCACAACTTCGTGGCA
60 TTTCCCTTTTAAAGTCCACAACTCCGTGGCA
776486 TCTTTCACCC
Statistics
Matches: 655, Mismatches: 68, Indels: 56
0.84 0.09 0.07
Matches are distributed among these distances:
124 4 0.01
126 2 0.00
129 1 0.00
130 4 0.01
131 390 0.60
132 10 0.02
133 75 0.11
134 102 0.16
135 12 0.02
136 21 0.03
137 34 0.05
ACGTcount: A:0.20, C:0.35, G:0.14, T:0.31
Consensus pattern (131 bp):
TCAAAGTCCACAACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCT
T
Found at i:776248 original size:231 final size:229
Alignment explanation
Indices: 775604--776485 Score: 1003
Period size: 231 Copynumber: 3.8 Consensus size: 229
775594 CAGTGGCATC
* * * *
775604 AAAGTCCACAACCTCGTGGCACCTTGATCCTTTCAAAGTCCACAACTCCGTGGCACTTTCTTTTC
1 AAAGTCCACAACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCACCTTCCTTTC
* *
775669 AAAGCCCACAACTCAGTGGCACTCTTTTTCCCTTTT-AAAGTCCACAACCCCGTGGCACCTTGTT
66 AAAGCCCACAACTCCGTGGCACTC---TT--CTTTTCAAAGCCCACAACCCCGTGGCACCTTGTT
* * * * *
775733 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTTCATGGCGCCTTT
126 CCTTTTAAGTCCACAACTCCGTGGCACC-TTTTCCTTTT-AAGTCCACAACTCCGTGGCACC---
*
775798 TTCTTTTCAAAGCCCACCACTCCGTGGCAC-C-TTTT--CTTTT
186 TTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
* * *
775838 TAAGTCCACGACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCACCTTCTTTTC
1 AAAGTCCACAACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCACCTTCCTTTC
* * * * *
775903 AAAGCCCATAACTCCGTGGCACTCTTTTTCCCGTTTAAAGTCCACAACCCCGGGGCACCTTGTTC
66 AAAGCCCACAACTCCGTGGCACTCTTCTT----TTCAAAGCCCACAACCCCGTGGCACCTTGTTC
* ** * *
775968 CTTTTAAGTCCACGACTCCGTGGCACC--TTCCATTCAAAGTCCGCGACTCCGTGGCACCTTCTT
127 CTTTTAAGTCCACAACTCCGTGGCACCTTTTCC-TTTTAAGTCCACAACTCCGTGGCACCTTCTT
776031 TTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
191 TTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
* * * *
776070 AAAGTCCACAACTCTGTGGCACCTTGTTCCTTT-TAAGTCCACGACTCCGTGGCACCTTCCTTTC
1 AAAGTCCACAACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCACCTTCCTTTC
* * * * * * *
776134 AAAGTCCGCGACTCCGTGGCAC-CTTCTTTTCAAAGCCCACAACTCTGCGGCACTCTTTTTCCAT
66 AAAGCCCACAACTCCGTGGCACTCTTCTTTTCAAAGCCCACAACCCCGTGGCAC-CTTGTTCC-T
* *
776198 TTTAAAGTCGACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCTTT
129 TTT-AAGTCCACAACTCCGTGGCACCTT-TTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTTT
*
776263 TCAGAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
192 TCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
* * * * *
776301 AAAGTCTACAACCCCATGGCACCTTGTTCCTTT-AAAGTCCACGACTCCATGGCACCTTCCATTC
1 AAAGTCCACAACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCACCTTCCTTTC
* * * * * *
776365 AAAGTCCGCGACTCCGTGGCAC-CTTCTTTTCAAAGCCCACAACTCCGTGGCACTTTTTTTCCCT
66 AAAGCCCACAACTCCGTGGCACTCTTCTTTTCAAAGCCCACAACCCCGTGGCAC-CTTGTT-CCT
* * *
776429 TTTAAAGCCCACAACTCCGTGGCACCTTAATCCTTTTAAGTCCACAACTTCGTGGCA
129 TTT-AAGTCCACAACTCCGTGGCACCTT-TTCCTTTTAAGTCCACAACTCCGTGGCA
776486 TCTTTCACCC
Statistics
Matches: 571, Mismatches: 60, Indels: 37
0.85 0.09 0.06
Matches are distributed among these distances:
226 20 0.04
227 7 0.01
228 33 0.06
229 23 0.04
230 9 0.02
231 299 0.52
232 42 0.07
233 2 0.00
234 136 0.24
ACGTcount: A:0.20, C:0.35, G:0.15, T:0.30
Consensus pattern (229 bp):
AAAGTCCACAACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCACCTTCCTTTC
AAAGCCCACAACTCCGTGGCACTCTTCTTTTCAAAGCCCACAACCCCGTGGCACCTTGTTCCTTT
TAAGTCCACAACTCCGTGGCACCTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTTTTCAA
AGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
Found at i:776529 original size:32 final size:32
Alignment explanation
Indices: 776492--776589 Score: 160
Period size: 32 Copynumber: 3.1 Consensus size: 32
776482 GGCATCTTTC
*
776492 ACCCTTTTTAAAGCCCACACAAGTCGGTGGCA
1 ACCCTTTTCAAAGCCCACACAAGTCGGTGGCA
**
776524 ACCCTTTTCAAAGCCCACACAAAACGGTGGCA
1 ACCCTTTTCAAAGCCCACACAAGTCGGTGGCA
*
776556 ACCCTTCTCAAAGCCCACACAAGTCGGTGGCA
1 ACCCTTTTCAAAGCCCACACAAGTCGGTGGCA
776588 AC
1 AC
776590 ACTTCTAAGC
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 60 1.00
ACGTcount: A:0.31, C:0.35, G:0.17, T:0.17
Consensus pattern (32 bp):
ACCCTTTTCAAAGCCCACACAAGTCGGTGGCA
Found at i:776595 original size:32 final size:32
Alignment explanation
Indices: 776492--776602 Score: 154
Period size: 32 Copynumber: 3.5 Consensus size: 32
776482 GGCATCTTTC
* *
776492 ACCCTTTTTAAAGCCCACACAAGTCGGTGGCA
1 ACCCTTCTCAAAGCCCACACAAGTCGGTGGCA
* **
776524 ACCCTTTTCAAAGCCCACACAAAACGGTGGCA
1 ACCCTTCTCAAAGCCCACACAAGTCGGTGGCA
776556 ACCCTTCTCAAAGCCCACACAAGTCGGTGGCA
1 ACCCTTCTCAAAGCCCACACAAGTCGGTGGCA
*
776588 ACACTTCT--AAGCCCA
1 ACCCTTCTCAAAGCCCA
776603 ATATCGCCGG
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
30 7 0.10
32 65 0.90
ACGTcount: A:0.31, C:0.35, G:0.16, T:0.18
Consensus pattern (32 bp):
ACCCTTCTCAAAGCCCACACAAGTCGGTGGCA
Found at i:776761 original size:92 final size:92
Alignment explanation
Indices: 776595--777342 Score: 1019
Period size: 92 Copynumber: 8.0 Consensus size: 92
776585 GCAACACTTC
* * * *
776595 TAAGCCCAATATCGCCGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
* *
776660 GGCCCTGAATCAGCACATTGGCACCTC
66 GGCCTTGAATCAGCACATTGGCACCTT
* * * *
776687 CAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAACGTAGTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
*
776752 GGCCTTGAATAAGCACATTGGCACCTT
66 GGCCTTGAATCAGCACATTGGCACCTT
** * *
776779 TAAGTCCAATATAGGAGGCCTTGAATCAGCATATTGGCACCTTCTTCTATAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
776844 GGCCTTGAATCAGCACATTGGCACCTT
66 GGCCTTGAATCAGCACATTGGCACCTT
* * *
776871 TAAGTCCAATATAGCCGGCCTTGAATCAGCATATTGGCACCTTCATGTTTAAGTCGAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
776936 GGCCTTGAATCAGCACATTGGCACCTT
66 GGCCTTGAATCAGCACATTGGCACCTT
* * * *
776963 TAAGTCCAATATAGCTGGACTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAACGCAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
*
777028 GGCCTTGATTCAGCACATTGGCACCTT
66 GGCCTTGAATCAGCACATTGGCACCTT
* * *
777055 TAATTCCAAAATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTGGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
777120 GGCCTTGAATCAGCACATTGGCACCTT
66 GGCCTTGAATCAGCACATTGGCACCTT
* * * * * * * *
777147 TAAGTCCAATATCGTTGGCCTTGAATTAGCATATTGGCATCATCACCTTTAAGTCCAATATCGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
* *
777212 GGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTT
66 GGCCTTGAATCAGCACATT---G-----G-CACCTT
* * * *
777248 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGAATCTTTGTCATCTTTAAGTCCAATGTC
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C-CT-TCATCTTTAAGTCCAATGTA
*
777313 GCCGGCCTTGAATCAGCACATTGGCACCTT
63 GCTGGCCTTGAATCAGCACATTGGCACCTT
777343 CATCTTTAAC
Statistics
Matches: 581, Mismatches: 63, Indels: 21
0.87 0.09 0.03
Matches are distributed among these distances:
92 493 0.85
95 6 0.01
96 1 0.00
100 1 0.00
101 42 0.07
104 38 0.07
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.30
Consensus pattern (92 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
GGCCTTGAATCAGCACATTGGCACCTT
Found at i:777266 original size:52 final size:52
Alignment explanation
Indices: 777144--777342 Score: 278
Period size: 52 Copynumber: 3.9 Consensus size: 52
777134 ACATTGGCAC
* * ** *
777144 CTTTAAGTCCAATATCGTTGGCCTTGAATTAGCATATTGGCA---TCATCAC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCAT
*
777193 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCAT
* *
777245 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGAATCTTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCAT
* * *
777297 CTTTAAGTCCAATGTCGCCGGCCTTGAATCAGCACATTGGCACCTT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT
777343 CATCTTTAAC
Statistics
Matches: 133, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
49 39 0.29
52 94 0.71
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.34
Consensus pattern (52 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCAT
Found at i:778248 original size:32 final size:32
Alignment explanation
Indices: 778193--778290 Score: 160
Period size: 32 Copynumber: 3.0 Consensus size: 32
778183 TTCAACGATT
*
778193 TGTATCGATACATAAAGTGTTGTATCGAAACAA
1 TGTATCGATACAT-AAGTGTTGTATCGATACAA
*
778226 TGTATTGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
778258 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
778290 T
1 T
778291 TTAAGCTACT
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
32 49 0.80
33 12 0.20
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:778254 original size:19 final size:18
Alignment explanation
Indices: 778191--778288 Score: 72
Period size: 19 Copynumber: 5.8 Consensus size: 18
778181 ATTTCAACGA
778191 TTTGTATCGATACATAAAG
1 TTTGTATCGATACAT-AAG
*
778210 TGTTGTATCGA-A-ACAA-
1 T-TTGTATCGATACATAAG
*
778226 --TGTATTGATACATAAG
1 TTTGTATCGATACATAAG
778242 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
778258 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
778274 TTTTGTATCGATACA
1 -TTTGTATCGATACA
778289 ATTTAAGCTA
Statistics
Matches: 62, Mismatches: 4, Indels: 26
0.67 0.04 0.28
Matches are distributed among these distances:
13 18 0.29
14 1 0.02
15 5 0.08
17 4 0.06
18 1 0.02
19 24 0.39
20 9 0.15
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:778263 original size:13 final size:13
Alignment explanation
Indices: 778245--778269 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
778235 ACATAAGTGT
778245 TGTATCGATACAA
1 TGTATCGATACAA
778258 TGTATCGATACA
1 TGTATCGATACA
778270 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:778349 original size:13 final size:13
Alignment explanation
Indices: 778331--778356 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
778321 ATTACTCAAC
778331 TGTATCGATACAT
1 TGTATCGATACAT
778344 TGTATCGATACAT
1 TGTATCGATACAT
778357 GCAAGCAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:778422 original size:52 final size:52
Alignment explanation
Indices: 778344--778472 Score: 240
Period size: 52 Copynumber: 2.5 Consensus size: 52
778334 ATCGATACAT
*
778344 TGTATCGATACATGCAAGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
778396 TGTATCGATACATGCAGGCAAATTTGCCCAGGTGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
778448 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
778473 TCATATTTCG
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 75 1.00
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:781971 original size:31 final size:30
Alignment explanation
Indices: 781864--782523 Score: 160
Period size: 31 Copynumber: 20.5 Consensus size: 30
781854 AGAATAGGTT
* * *
781864 CACGACTCAGTGGCAATCTCTTCTTAAAGCC
1 CACGACTCAGTGGCATTTTCTT-TTAAAGTC
* * **
781895 CACGAATCAGTGGCATTTTGTCCTAAAGTC
1 CACGACTCAGTGGCATTTTCTTTTAAAGTC
781925 CACGACTCAGTGGCATTTTCTTTTCAAAGTC
1 CACGACTCAGTGGCATTTTCTTTT-AAAGTC
*
781956 CATGACTCAGTGGCA---TC----AAAGTC
1 CACGACTCAGTGGCATTTTCTTTTAAAGTC
* * *
781979 CACAAC-CTTGTGGCACCTTGTTCCTTTCAAAGTC
1 CACGACTC-AGTGGCA--TT-TT-CTTTTAAAGTC
* * * *
782013 CACAACTCCGTGGCACTTTCTTTTCAAAGCC
1 CACGACTCAGTGGCATTTTCTTTT-AAAGTC
*
782044 CACAACTCAGTGGCACTCTTTTTCCCTTTTAAAGTC
1 CACGACTCAGTGGCA----TTTT--CTTTTAAAGTC
* *
782080 CACAACCCCA-TGGCACCTTGTTCCTTTT-AAGTC
1 CACGA-CTCAGTGGCA--TT-TT-CTTTTAAAGTC
* * *
782113 CACAACTCCGTGGCACCTTTTTCTTTTTAAAGCC
1 CACGACTCAGTGGCA---TTTTC-TTTTAAAGTC
** * *
782147 CATAACTCCGTGGCACCTTTTTCTTTTCAAAGCC
1 CACGACTCAGTGGCA---TTTTCTTTT-AAAGTC
* * *
782181 CACCACTCCGTGGCACCTTTTCTTTTTAAGTC
1 CACGACTCAGTGGCA--TTTTCTTTTAAAGTC
* * *
782213 CACGACCCCGTGGCACCTTGTTCCTTTCAAAGTC
1 CACGACTCAGTGGCA--TT-TT-CTTTTAAAGTC
* * * ** *
782247 CACAACTCTGTGCCACCTTCTTTTCAAAGCC
1 CACGACTCAGTGGCATTTTCTTTT-AAAGTC
* *
782278 CACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTC
1 CACGACTCAGTGGCA----TTTT--CTTTTAAAGTC
* *
782314 CACAACCCCA-TGGCACCTTGTTCCTTTT-AAGTC
1 CACGA-CTCAGTGGCA--TT-TT-CTTTTAAAGTC
* * * *
782347 CACGACTCCGTGGCACCTTCCTTTCAAAGTC
1 CACGACTCAGTGGCA-TTTTCTTTTAAAGTC
* * ** *
782378 CGCGACTCCGTGGCACCTTCTTTTCAAAGCC
1 CACGACTCAGTGGCATTTTCTTTT-AAAGTC
* *
782409 CACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTC
1 CACGACTCAGTGGCA----TTTT--CTTTTAAAGTC
*
782445 CACAACTCCA-TGGCACCTTGTTCCTTTT-AAGTC
1 CACGACT-CAGTGGCA--TT-TT-CTTTTAAAGTC
* * * *
782478 CACGACTCCGTGGCACCTTCCTTTCAAAGTC
1 CACGACTCAGTGGCA-TTTTCTTTTAAAGTC
* *
782509 CGCGACTCCGTGGCA
1 CACGACTCAGTGGCA
782524 CCTTCATTTC
Statistics
Matches: 499, Mismatches: 78, Indels: 104
0.73 0.11 0.15
Matches are distributed among these distances:
22 1 0.00
23 16 0.03
28 2 0.00
29 1 0.00
30 49 0.10
31 136 0.27
32 32 0.06
33 67 0.13
34 113 0.23
35 14 0.03
36 47 0.09
37 21 0.04
ACGTcount: A:0.21, C:0.34, G:0.15, T:0.31
Consensus pattern (30 bp):
CACGACTCAGTGGCATTTTCTTTTAAAGTC
Found at i:782208 original size:100 final size:98
Alignment explanation
Indices: 781973--782859 Score: 710
Period size: 100 Copynumber: 8.9 Consensus size: 98
781963 CAGTGGCATC
* * *
781973 AAAGTCCACAAC-CTTGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCA-C-TTTCTT
1 AAAGTCCACAACTC-CGTGGCACCTT-TT-CTTTTAAAGTCCACAACTCCGTGGCACCTTTTCCT
*
782035 TTCAAAGCCCACAACTCAGTGGCACTCTTTTTCCCTTTT
63 TTCAAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTT
* * *
782074 AAAGTCCACAACCCCATGGCACCTTGTTCCTTTT-AAGTCCACAACTCCGTGGCACCTTTTTCTT
1 AAAGTCCACAACTCCGTGGCACCTT-TT-CTTTTAAAGTCCACAACTCCGTGGCACC-TTTTCCT
* *
782138 TTTAAAGCCCATAACTCCGTGGCACCTTTTTCTTTT
63 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTT
* * * * *
782174 CAAAGCCCACCACTCCGTGGCACCTTTTCTTTTTAAGTCCACGACCCCGTGGCACCTTGTTCCTT
1 -AAAGTCCACAACTCCGTGGCACCTTTTCTTTTAAAGTCCACAACTCCGTGGCACCTT-TTCCTT
* * *
782239 TCAAAGTCCACAACTCTGTGCCACC---TTCTTTT
64 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTT
* * *
782271 CAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACCCCATGGCACCTTGTT
1 -AAAGTCCACAACTCCGTGGCAC-C-TTTT--CTTTTAAAGTCCACAACTCCGTGGCACCTT-TT
* * * * *
782336 CCTTT-TAAGTCCACGACTCCGTGGCACC--TTCCTTTC
60 CCTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTT
* * *
782372 AAAGTCCGCGACTCCGTGGCACC--TTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 AAAGTCCACAACTCCGTGGCACCTTTTCTTTT-AAAGTCCACAACTCCGTGGCAC-C-TTTT-CC
* * * *
782435 TTTTAAAGTCCACAACTCCATGGCACCTTGTTCCTTTT
62 TTTCAAAGCCCACAACTCCGTGGCACCTT-TTTCTTTT
* * * * * *
782473 -AAGTCCACGACTCCGTGGCACC-TTCCTTTCAAAGTCCGCGACTCCGTGGCACC--TTCATTTC
1 AAAGTCCACAACTCCGTGGCACCTTTTCTTTTAAAGTCCACAACTCCGTGGCACCTTTTCCTTTC
782534 AAAGCCCACAACTCCGTGGCACTCTTTTTCCATTTT
66 AAAGCCCACAACTCCGTGGCAC-CTTTTT-C-TTTT
* * * *
782570 AAAGTCGACAACTCCATGGCACCTTGTTCCTTTT-AAGTCCACGACTCCGTGGCACC--TTCTTT
1 AAAGTCCACAACTCCGTGGCACCTT-TT-CTTTTAAAGTCCACAACTCCGTGGCACCTTTTCCTT
*
782632 TCAGAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
64 TCAAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTT
* *
782670 AAAGTCCACAACCCCATGGCACCTTGTTCCTTTT-AAGTCCA-AGACTCCGTGGCACC--TTCCT
1 AAAGTCCACAACTCCGTGGCACCTT-TT-CTTTTAAAGTCCACA-ACTCCGTGGCACCTTTTCCT
* * * * *
782731 TTCAAAGTCCGCGACTCCGTGGCACC-TTAT-TTTC
63 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTT
* * * * *
782765 AAAGCCCATAACTCTGTGGCACTCTTTTTCCCTTTTAAAGCCCACAACTTCGTGGCACCTTGTTC
1 AAAGTCCACAACTCCGTGGCAC-C-TTTT--CTTTTAAAGTCCACAACTCCGTGGCACCTT-TTC
* * * * *
782830 CTTT-TAAGTCCGCAACTTCGTGGCATCTTT
61 CTTTCAAAGCCCACAACTCCGTGGCACCTTT
782860 CACCCTTTTT
Statistics
Matches: 669, Mismatches: 78, Indels: 78
0.81 0.09 0.09
Matches are distributed among these distances:
94 5 0.01
95 65 0.10
96 14 0.02
97 48 0.07
98 61 0.09
99 16 0.02
100 307 0.46
101 118 0.18
102 7 0.01
103 28 0.04
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.32
Consensus pattern (98 bp):
AAAGTCCACAACTCCGTGGCACCTTTTCTTTTAAAGTCCACAACTCCGTGGCACCTTTTCCTTTC
AAAGCCCACAACTCCGTGGCACCTTTTTCTTTT
Found at i:782395 original size:131 final size:130
Alignment explanation
Indices: 781971--782846 Score: 910
Period size: 131 Copynumber: 6.6 Consensus size: 130
781961 CTCAGTGGCA
* * *
781971 TCAAAGTCCACAAC-CTTGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCA-C--TTT
1 TCAAAGTCCACAACTC-CGTGGCACC-T-TTCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTT
* * * * *
782032 -CTTTTCAAAGCCCACAACT-CAGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACCCCATGGCA
63 CCTTTT-AAAGTCCACAACTCCA-TGGCAC-CTTGTT-CCTTTT-AAGTCCACGACTCCGTGGCA
782095 CCTTGTTCCTT
123 CC---TTCCTT
* * *
782106 T-TAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCATAACTCCGTGGCACCTTTTT-
1 TCAAAGTCCACAACTCCGTGGCACC--TTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTC
* * * * *
782169 CTTTTCAAAGCCCACCACTCCGTGGCACCTT-TTCTTTTTAAGTCCACGACCCCGTGGCACCTTG
64 CTTTT-AAAGTCCACAACTCCATGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACC---
782233 TTCCTT
125 TTCCTT
* *
782239 TCAAAGTCCACAACTCTGTGCCACC-TTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 TCAAAGTCCACAACTCCGTGGCACCTTTCTTTTCAAAGCCCACAACTCCGTGGCAC-CTTTTT-C
*
782303 CTTTTAAAGTCCACAACCCCATGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCC
64 CTTTTAAAGTCCACAACTCCATGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCC
782368 TT
129 TT
* *
782370 TCAAAGTCCGCGACTCCGTGGCACC-TTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 TCAAAGTCCACAACTCCGTGGCACCTTTCTTTTCAAAGCCCACAACTCCGTGGCAC-CTTTTT-C
782434 CTTTTAAAGTCCACAACTCCATGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCC
64 CTTTTAAAGTCCACAACTCCATGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCC
782499 TT
129 TT
* * *
782501 TCAAAGTCCGCGACTCCGTGGCACC-TTCATTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 TCAAAGTCCACAACTCCGTGGCACCTTTCTTTTCAAAGCCCACAACTCCGTGGCAC-CTTTTTCC
* *
782565 ATTTTAAAGTCGACAACTCCATGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCT
65 -TTTTAAAGTCCACAACTCCATGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCC
782630 TT
129 TT
* * * * * *
782632 TCAGAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT-AAAGTCCACAACCCCATGGCACCTTG
1 TCAAAGTCCACAACTCCGTGGCAC-C--TTT--CTTTTCAAAGCCCACAACTCCGTGGCACCTTT
* * *
782696 TTCCTTTT-AAGTCCA-AGACTCCGTGGCACC---TTCCTTTCAAAGTCCGCGACTCCGTGGCAC
61 TTCCTTTTAAAGTCCACA-ACTCCATGGCACCTTGTTCCTTT-TAAGTCCACGACTCCGTGGCAC
**
782756 CTTATTT
124 CTTCCTT
* * * * *
782763 TCAAAGCCCATAACTCTGTGGCACTCTTTTTCCCTTTT-AAAGCCCACAACTTCGTGGCACCTTG
1 TCAAAGTCCACAACTCCGTGGCAC-C--TTT--CTTTTCAAAGCCCACAACTCCGTGGCACCTTT
*
782827 TTCCTTTT-AAGTCCGCAACT
61 TTCCTTTTAAAGTCCACAACT
782847 TCGTGGCATC
Statistics
Matches: 668, Mismatches: 52, Indels: 46
0.87 0.07 0.06
Matches are distributed among these distances:
130 9 0.01
131 405 0.61
132 9 0.01
133 69 0.10
134 106 0.16
135 16 0.02
136 22 0.03
137 31 0.05
138 1 0.00
ACGTcount: A:0.20, C:0.35, G:0.14, T:0.31
Consensus pattern (130 bp):
TCAAAGTCCACAACTCCGTGGCACCTTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCCT
TTTAAAGTCCACAACTCCATGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTT
Found at i:782617 original size:231 final size:232
Alignment explanation
Indices: 781973--782854 Score: 1015
Period size: 231 Copynumber: 3.8 Consensus size: 232
781963 CAGTGGCATC
*** * *
781973 AAAGTCCACAACCTTGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCACTTTCTTTTC
1 AAAGTCCACAACCCCATGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCACCTTCCTTTC
* * * *
782038 AAAGCCCACAACTCAGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACCCCATGGCACCTTGTTC
66 AAAGCCCACAACTCCGTGGCACTC--TTTCCATTTCAAAGCCCACAACCCCATGGCACCTTGTTC
* * * *
782103 CTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCATAACTCCGTGGCACCTTTT
129 CTTTTAAGTCCACAACTCCGTGGCACCTTGTTCCTTTT-AAGTCCACAACTCCGTGGCACC---T
*
782168 TCTTTTCAAAGCCCACCACTCCGTGGCAC-C-TTTT--CTTTT
190 TCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
* * * * * *
782207 TAAGTCCACGACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCTGTGCCACCTTCTTTTC
1 AAAGTCCACAACCCCATGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCACCTTCCTTTC
* * *
782272 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACCCCATGGCACCTTGTTC
66 AAAGCCCACAACTCCGTGGCACTC--TTTCCATTTCAAAGCCCACAACCCCATGGCACCTTGTTC
* * * *
782337 CTTTTAAGTCCACGACTCCGTGGCACC---TTCCTTTCAAAGTCCGCGACTCCGTGGCACCTTCT
129 CTTTTAAGTCCACAACTCCGTGGCACCTTGTTCCTTT-TAAGTCCACAACTCCGTGGCACCTTCT
782399 TTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
193 TTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
* * *
782439 AAAGTCCACAACTCCATGGCACCTTGTTCCTTT-TAAGTCCACGACTCCGTGGCACCTTCCTTTC
1 AAAGTCCACAACCCCATGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCACCTTCCTTTC
* * * * * *
782503 AAAGTCCGCGACTCCGTGGCAC-C-TT-CATTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCC
66 AAAGCCCACAACTCCGTGGCACTCTTTCCATTTCAAAGCCCACAACCCCATGGCAC-CTTGTTCC
* * *
782565 ATTTTAAAGTCGACAACTCCATGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCT
130 -TTTT-AAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCT
*
782630 TTTCAGAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
193 TTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
*
782670 AAAGTCCACAACCCCATGGCACCTTGTTCCTTT-TAAGTCCA-AGACTCCGTGGCACCTTCCTTT
1 AAAGTCCACAACCCCATGGCACCTTGTTCCTTTCAAAGTCCACA-ACTCCGTGGCACCTTCCTTT
* * * * * ** *
782733 CAAAGTCCGCGACTCCGTGGCAC-C-TT--ATTTTCAAAGCCCATAACTCTGTGGCACTCTTTTT
65 CAAAGCCCACAACTCCGTGGCACTCTTTCCA-TTTCAAAGCCCACAACCCCATGGCAC-CTTGTT
* * * *
782794 CCCTTTTAAAGCCCACAACTTCGTGGCACCTTGTTCCTTTTAAGTCCGCAACTTCGTGGCA
128 -CCTTTT-AAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCA
782855 TCTTTCACCC
Statistics
Matches: 583, Mismatches: 51, Indels: 31
0.88 0.08 0.05
Matches are distributed among these distances:
226 23 0.04
227 9 0.02
228 33 0.06
229 20 0.03
230 6 0.01
231 301 0.52
232 43 0.07
234 148 0.25
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.31
Consensus pattern (232 bp):
AAAGTCCACAACCCCATGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCACCTTCCTTTC
AAAGCCCACAACTCCGTGGCACTCTTTCCATTTCAAAGCCCACAACCCCATGGCACCTTGTTCCT
TTTAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTTTT
CAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
Found at i:782867 original size:34 final size:33
Alignment explanation
Indices: 781973--782879 Score: 237
Period size: 31 Copynumber: 27.3 Consensus size: 33
781963 CAGTGGCATC
* * * *
781973 AAAGTCCACAACCTT-GTGGCACCTTGTTCCTTTC
1 AAAGCCCACAA-CTTCGTGGCATCTT-TCCCTTTT
* *
782007 AAAGTCCACAACTCCGTGGCA-CTTT--CTTTT
1 AAAGCCCACAACTTCGTGGCATCTTTCCCTTTT
782037 CAAAGCCCACAAC-TCAGTGGCACTCTTTTTCCCTTTT
1 -AAAGCCCACAACTTC-GTGGCA-TC--TTTCCCTTTT
* ** * * *
782074 AAAGTCCACAACCCCATGGCACCTTGTTCCTTTT
1 AAAGCCCACAACTTCGTGGCATCTT-TCCCTTTT
* * * * *
782108 -AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTTCGTGGCATC-TTTCCCTTTT
* * * **
782141 AAAGCCCATAACTCCGTGGCACCTTTTTCTTTT
1 AAAGCCCACAACTTCGTGGCATCTTTCCCTTTT
* * * *
782174 CAAAGCCCACCACTCCGTGGCACCTTT-TCTTTT
1 -AAAGCCCACAACTTCGTGGCATCTTTCCCTTTT
* * * ** * * *
782207 TAAGTCCACGACCCCGTGGCACCTTGTTCCTTTC
1 AAAGCCCACAACTTCGTGGCATCTT-TCCCTTTT
* * *
782241 AAAGTCCACAAC-TCTGTGCCA-CCTT--CTTTT
1 AAAGCCCACAACTTC-GTGGCATCTTTCCCTTTT
*
782271 CAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 -AAAGCCCACAACTTCGTGGCA-TC--TTTCCCTTTT
* ** * * *
782308 AAAGTCCACAACCCCATGGCACCTTGTTCCTTTT
1 AAAGCCCACAACTTCGTGGCATCTT-TCCCTTTT
* * * * *
782342 -AAGTCCACGACTCCGTGGCA-CCTT-CCTTTC
1 AAAGCCCACAACTTCGTGGCATCTTTCCCTTTT
* * * * *
782372 AAAGTCCGCGACTCCGTGGCA-CCTT--CTTTT
1 AAAGCCCACAACTTCGTGGCATCTTTCCCTTTT
*
782402 CAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 -AAAGCCCACAACTTCGTGGCA-TC--TTTCCCTTTT
* * * * *
782439 AAAGTCCACAACTCCATGGCACCTTGTTCCTTTT
1 AAAGCCCACAACTTCGTGGCATCTT-TCCCTTTT
* * * * *
782473 -AAGTCCACGACTCCGTGGCA-CCTT-CCTTTC
1 AAAGCCCACAACTTCGTGGCATCTTTCCCTTTT
* * * * * * *
782503 AAAGTCCGCGACTCCGTGGCA-CCTT-CATTTC
1 AAAGCCCACAACTTCGTGGCATCTTTCCCTTTT
* *
782534 AAAGCCCACAACTCCGTGGCACTCTTTTTCCATTTT
1 AAAGCCCACAACTTCGTGGCA-TC--TTTCCCTTTT
* * * * * *
782570 AAAGTCGACAACTCCATGGCACCTTGTTCCTTTT
1 AAAGCCCACAACTTCGTGGCATCTT-TCCCTTTT
* * * *
782604 -AAGTCCACGACTCCGTGGCA-CCTT--CTTTT
1 AAAGCCCACAACTTCGTGGCATCTTTCCCTTTT
* *
782633 CAGAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 -AAAGCCCACAACTTCGTGGCA-TC--TTTCCCTTTT
* ** * * *
782670 AAAGTCCACAACCCCATGGCACCTTGTTCCTTTT
1 AAAGCCCACAACTTCGTGGCATCTT-TCCCTTTT
* * * *
782704 -AAGTCCA-AGACTCCGTGGCA-CCTT-CCTTTC
1 AAAGCCCACA-ACTTCGTGGCATCTTTCCCTTTT
* * * * * *
782734 AAAGTCCGCGACTCCGTGGCACCTTAT---TTTC
1 AAAGCCCACAACTTCGTGGCATCTT-TCCCTTTT
*
782765 AAAGCCCATAAC-TCTGTGGCACTCTTTTTCCCTTTT
1 AAAGCCCACAACTTC-GTGGCA-TC--TTTCCCTTTT
* *
782801 AAAGCCCACAACTTCGTGGCACCTTGTTCCTTTT
1 AAAGCCCACAACTTCGTGGCATCTT-TCCCTTTT
* *
782835 -AAGTCCGCAACTTCGTGGCATCTTTCACCCTTTTT
1 AAAGCCCACAACTTCGTGGCATCTTT--CCC-TTTT
782870 AAAGCCCACA
1 AAAGCCCACA
782880 TAAGTCGGTG
Statistics
Matches: 696, Mismatches: 108, Indels: 136
0.74 0.11 0.14
Matches are distributed among these distances:
29 5 0.01
30 29 0.04
31 176 0.25
32 37 0.05
33 158 0.23
34 127 0.18
35 21 0.03
36 120 0.17
37 23 0.03
ACGTcount: A:0.20, C:0.35, G:0.14, T:0.31
Consensus pattern (33 bp):
AAAGCCCACAACTTCGTGGCATCTTTCCCTTTT
Found at i:782898 original size:32 final size:32
Alignment explanation
Indices: 782861--782962 Score: 177
Period size: 32 Copynumber: 3.2 Consensus size: 32
782851 GGCATCTTTC
* *
782861 ACCCTTTTTAAAGCCCACATAAGTCGGTGGCA
1 ACCCTTTTCAAAGCCCACACAAGTCGGTGGCA
782893 ACCCTTTTCAAAGCCCACACAAGTCGGTGGCA
1 ACCCTTTTCAAAGCCCACACAAGTCGGTGGCA
*
782925 ACCCTTCTCAAAGCCCACACAAGTCGGTGGCA
1 ACCCTTTTCAAAGCCCACACAAGTCGGTGGCA
782957 ACCCTT
1 ACCCTT
782963 CTAAGCCCAA
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 67 1.00
ACGTcount: A:0.27, C:0.34, G:0.18, T:0.21
Consensus pattern (32 bp):
ACCCTTTTCAAAGCCCACACAAGTCGGTGGCA
Found at i:783126 original size:92 final size:90
Alignment explanation
Indices: 783010--783941 Score: 1042
Period size: 92 Copynumber: 10.0 Consensus size: 90
783000 GCACCTTTAC
* * * * *
783010 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCGCC-TC-C-AAGTCCAATATCGCT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTCTAAGTCCAATGTAGCT
* *
783072 GGCCTTGAATCAGCATATTTGCACCTTCAT
66 GGCCTTGAATCAGCACATTGGCA----C-T
** * *
783102 CTTTAAGTCCAACGTAGCTGGCCTTGAATCAGCACATTGGCACC-T-T-TAAGTCCAATATAGCT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTCTAAGTCCAATGTAGCT
*
783164 GGCCTTGAATCAGCATATTGGCACCTT
66 GGCCTTGAATCAGCACATTGGCA-C-T
** *
783191 CTTTTTTAAGTCCAACGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAAC
1 C---TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTC-TC--TAAGTCCAAT
783256 GTAGCTGGCCTTGAATCAGCACATTGGCACT
60 GTAGCTGGCCTTGAATCAGCACATTGGCACT
* *
783287 -TTTAAGTCTAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAACGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTC-TC--TAAGTCCAATGTA
783351 GCTGGCCTTGAATCAGCACATTGGCAC-
63 GCTGGCCTTGAATCAGCACATTGGCACT
*
783378 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTATGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTC-TC--TAAGTCCAATGTA
783443 GCTGGCCTTGAATCAGCACATTGGCAC-
63 GCTGGCCTTGAATCAGCACATTGGCACT
* * *
783470 CTTTAAGTCTAATATAGCTGGCCTTGAATCACCATATTGGCACCTTCTTCTTTAAGTCCAACGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTC-TC--TAAGTCCAATGTA
*
783535 GTTGGCCTTGAATCAGCACATTGGCACT
63 GCTGGCCTTGAATCAGCACATTGGCACT
*
783563 -TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAACGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTC-TC--TAAGTCCAATGTA
783627 GCTGGCCTTGAATCAGCACATTGGCAC-
63 GCTGGCCTTGAATCAGCACATTGGCACT
*
783654 CTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTC-TC--TAAGTCCAATGTA
*
783719 GCTGGCCTTCAATCAGCACATTGGCAC-
63 GCTGGCCTTGAATCAGCACATTGGCACT
* ** * * *
783746 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCACCTTTAAGTCCAATATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C--CTTCTCTAAGTCCAATGTA
* *
783811 GCTGGCCTTGAATCAGCATATTGGCGCCTTTGTAAT
63 GCTGGCCTTGAATCAGCACATT-G-G-C-----ACT
* *
783847 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTTGTCATCTTTAAGTCCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C-CT-TC-TC--TAAGTCCAAT
* *
783912 GTCGCCGGCCTTGAATCAGCACATTGGCAC
60 GTAGCTGGCCTTGAATCAGCACATTGGCAC
783942 CTTAATCTTT
Statistics
Matches: 762, Mismatches: 48, Indels: 56
0.88 0.06 0.06
Matches are distributed among these distances:
89 3 0.00
92 628 0.82
93 3 0.00
94 2 0.00
95 4 0.01
96 2 0.00
97 1 0.00
98 36 0.05
100 2 0.00
101 46 0.06
102 2 0.00
103 1 0.00
104 32 0.04
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (90 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTCTAAGTCCAATGTAGCT
GGCCTTGAATCAGCACATTGGCACT
Found at i:783498 original size:276 final size:276
Alignment explanation
Indices: 783011--783944 Score: 1226
Period size: 276 Copynumber: 3.3 Consensus size: 276
783001 CACCTTTACC
* * * ** *
783011 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCGCC-TC--C---AAGTCCAATATCG
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAACGTAG
* * **
783070 CTGGCCTTGAATCAGCATATTTGCACCTTCATCTTTAAGTCCAACGTAGCTGGCCTTGAATCAGC
66 CTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGC
* * *
783135 ACATTGGCA----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTT
125 ATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--C--
**
783194 TTTTAAGTCCAACGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAACGTA
185 -TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAACGTA
783259 GCTGGCCTTGAATCAGCACATTGGCACT
249 GCTGGCCTTGAATCAGCACATTGGCACT
*
783287 TTTAAGTCTAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAACGTAG
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAACGTAG
783352 CTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTG
66 CTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTG
* *
783417 GCACCTTCATCTTTATGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCTAA
131 GCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAA
* *
783482 TATAGCTGGCCTTGAATCACCATATTGGCACCTTCTTCTTTAAGTCCAACGTAGTTGGCCTTGAA
196 TATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAACGTAGCTGGCCTTGAA
783547 TCAGCACATTGGCACT
261 TCAGCACATTGGCACT
783563 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAACGTAG
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAACGTAG
*
783628 CTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTG
66 CTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTG
*
783693 GCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTCAATCAGCACATTGGCACCTTTAAGTCCAA
131 GCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAA
* * * ** ** *
783758 TATCGCTGGCCTTGAATCAGCATATTGGCATCATCACCTTTAAGTCCAATATCGCTGGCCTTGAA
196 TATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAACGTAGCTGGCCTTGAA
* *
783823 TCAGCATATTGGCGCCTTTGTAAT
261 TCAGCACATT-G-G-C-----ACT
* * * *
783847 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTTGTCATCTTTAAGTCCAAT
1 -TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C-CT-TCTTCTTTAAGTCCAAC
* *
783912 GTCGCCGGCCTTGAATCAGCACATTGGCACCTT
62 GTAGCTGGCCTTGAATCAGCACATTGGCACCTT
783945 AATCTTTAAC
Statistics
Matches: 591, Mismatches: 43, Indels: 36
0.88 0.06 0.05
Matches are distributed among these distances:
276 419 0.71
277 3 0.01
278 2 0.00
279 3 0.01
280 1 0.00
281 1 0.00
282 72 0.12
284 2 0.00
285 40 0.07
286 1 0.00
287 1 0.00
288 46 0.08
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (276 bp):
TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAACGTAG
CTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTG
GCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAA
TATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAACGTAGCTGGCCTTGAA
TCAGCACATTGGCACT
Found at i:783873 original size:52 final size:52
Alignment explanation
Indices: 783746--783944 Score: 296
Period size: 52 Copynumber: 3.9 Consensus size: 52
783736 ACATTGGCAC
** *
783746 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA---TCATCAC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCAT
* *
783795 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCAT
*
783847 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCAT
* * *
783899 CTTTAAGTCCAATGTCGCCGGCCTTGAATCAGCACATTGGCACCTT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT
783945 AATCTTTAAC
Statistics
Matches: 135, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
49 41 0.30
52 94 0.70
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.33
Consensus pattern (52 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCAT
Found at i:784856 original size:32 final size:32
Alignment explanation
Indices: 784796--784893 Score: 160
Period size: 32 Copynumber: 3.0 Consensus size: 32
784786 TTCAACGATT
*
784796 TGTATCGATACATAAAGTGTTGTGTTGATACAA
1 TGTATCGATACAT-AAGTGTTGTATTGATACAA
784829 TGTATCGATACATAAGTGTTGTATTGATACAA
1 TGTATCGATACATAAGTGTTGTATTGATACAA
* *
784861 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATTGATACAA
784893 T
1 T
784894 TTAAGCTACT
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
32 49 0.79
33 13 0.21
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATTGATACAA
Found at i:784885 original size:19 final size:18
Alignment explanation
Indices: 784829--784891 Score: 64
Period size: 19 Copynumber: 3.7 Consensus size: 18
784819 GTTGATACAA
784829 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGT-T
*
784848 TGTATTGATAC--AA---
1 TGTATCGATACATAAGTT
784861 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAG-TT
784880 TGTATCGATACA
1 TGTATCGATACA
784892 ATTTAAGCTA
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 10 0.28
15 2 0.06
17 2 0.06
19 22 0.61
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.38
Consensus pattern (18 bp):
TGTATCGATACATAAGTT
Found at i:784952 original size:13 final size:13
Alignment explanation
Indices: 784934--784958 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
784924 ATTACTCAAC
784934 TGTATCGATACAT
1 TGTATCGATACAT
784947 TGTATCGATACA
1 TGTATCGATACA
784959 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:785011 original size:52 final size:52
Alignment explanation
Indices: 784967--785095 Score: 240
Period size: 52 Copynumber: 2.5 Consensus size: 52
784957 CACTGATCTT
*
784967 TGTATCGATACATGCAGGCAAATTTGCTCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
785019 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
785071 TGTATCAATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
785096 TCATATTTCG
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 75 1.00
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:790416 original size:20 final size:20
Alignment explanation
Indices: 790391--790430 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
790381 AAAAAAATTA
790391 AATATTTCATTAAAGGGGAG
1 AATATTTCATTAAAGGGGAG
* *
790411 AATATTTTATTAAGGGGGAG
1 AATATTTCATTAAAGGGGAG
790431 TTATATATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.03, G:0.28, T:0.33
Consensus pattern (20 bp):
AATATTTCATTAAAGGGGAG
Found at i:791197 original size:13 final size:13
Alignment explanation
Indices: 791160--791197 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
791150 AACTTACTCA
* *
791160 GTATCGATATAGT
1 GTATCGATACATT
791173 GTATCGATACATT
1 GTATCGATACATT
791186 GTATCGATACAT
1 GTATCGATACAT
791198 GGTGAAATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:794244 original size:22 final size:21
Alignment explanation
Indices: 794195--794270 Score: 70
Period size: 20 Copynumber: 3.7 Consensus size: 21
794185 AAAAACCTAT
*
794195 AATGTATCGATATAA-TG-AGA
1 AATGTATCGATACAATTGTA-A
794215 AATGTATCGATACAATTGTAA
1 AATGTATCGATACAATTGTAA
*
794236 ACATGTATCAATAC-ATT-TAA
1 A-ATGTATCGATACAATTGTAA
*
794256 TAATATATCGATACA
1 -AATGTATCGATACA
794271 TTTCCTTAGC
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
20 27 0.57
21 8 0.17
22 12 0.26
ACGTcount: A:0.45, C:0.11, G:0.12, T:0.33
Consensus pattern (21 bp):
AATGTATCGATACAATTGTAA
Found at i:795522 original size:13 final size:13
Alignment explanation
Indices: 795504--795528 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
795494 ATAATGCACA
795504 GTATCGATACATT
1 GTATCGATACATT
795517 GTATCGATACAT
1 GTATCGATACAT
795529 GACCACTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:795525 original size:33 final size:32
Alignment explanation
Indices: 795483--795545 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
795473 CACCTTCAGA
*
795483 TGTATCGATACATAATGCACAGTATCGATACAT
1 TGTATCGATACATAA-CCACAGTATCGATACAT
* *
795516 TGTATCGATACATGACCACTGTATCGATAC
1 TGTATCGATACATAACCACAGTATCGATAC
795546 TTGCAAAGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 13 0.48
33 14 0.52
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (32 bp):
TGTATCGATACATAACCACAGTATCGATACAT
Found at i:795641 original size:32 final size:33
Alignment explanation
Indices: 795597--795664 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
795587 CCTTAACTGT
*
795597 TTGTATCGATACAT-ACAAAATGTATCGATACA
1 TTGTATCAATACATGACAAAATGTATCGATACA
* *
795629 TTGTATCAATACATGACCAAATGTATCGATAGA
1 TTGTATCAATACATGACAAAATGTATCGATACA
795662 TTG
1 TTG
795665 GCTTGTAACG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (33 bp):
TTGTATCAATACATGACAAAATGTATCGATACA
Found at i:796335 original size:21 final size:20
Alignment explanation
Indices: 796296--796333 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
796286 GGGAACAGAA
796296 AATGCAAGTTTTTGGAAAGG
1 AATGCAAGTTTTTGGAAAGG
796316 AATGCCAA-TTTTTGGAAA
1 AATG-CAAGTTTTTGGAAA
796334 AGAAATATAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.37, C:0.08, G:0.24, T:0.32
Consensus pattern (20 bp):
AATGCAAGTTTTTGGAAAGG
Found at i:801358 original size:28 final size:29
Alignment explanation
Indices: 801308--801396 Score: 87
Period size: 28 Copynumber: 3.2 Consensus size: 29
801298 ATTGAAAAAT
* *
801308 AAGAAAGATC-AA-GAAAGCGAAATCAA-C
1 AAGAAATATCAAAGGAAA-CGAAATCAAGA
*
801335 AAGAAATATGAAAGGAAACGAAAT-AAGA
1 AAGAAATATCAAAGGAAACGAAATCAAGA
* * *
801363 AAGAAATTTCAAAGGAAAAGAAATCAATA
1 AAGAAATATCAAAGGAAACGAAATCAAGA
801392 AAGAA
1 AAGAA
801397 GAATAAAGAA
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
27 10 0.20
28 29 0.57
29 12 0.24
ACGTcount: A:0.63, C:0.08, G:0.18, T:0.11
Consensus pattern (29 bp):
AAGAAATATCAAAGGAAACGAAATCAAGA
Found at i:801459 original size:9 final size:9
Alignment explanation
Indices: 801456--801488 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
801446 TTTTTCTCTT
801456 TTTTTTTTC
1 TTTTTTTTC
801465 TTTTTTTTC
1 TTTTTTTTC
*
801474 TTTTTGTT-
1 TTTTTTTTC
801482 TTTTTTT
1 TTTTTTT
801489 ATGATAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 6 0.27
9 16 0.73
ACGTcount: A:0.00, C:0.06, G:0.03, T:0.91
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:801460 original size:11 final size:11
Alignment explanation
Indices: 801444--801483 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
801434 CTAATAACTA
801444 TTTTTTTCTCT
1 TTTTTTTCTCT
*
801455 TTTTTTTTTCT
1 TTTTTTTCTCT
801466 TTTTTTTCT-T
1 TTTTTTTCTCT
801476 TTTGTTTT
1 TTT-TTTT
801484 TTTTTATGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 4 0.15
11 22 0.85
ACGTcount: A:0.00, C:0.10, G:0.03, T:0.88
Consensus pattern (11 bp):
TTTTTTTCTCT
Found at i:801470 original size:20 final size:20
Alignment explanation
Indices: 801444--801488 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
801434 CTAATAACTA
801444 TTTTTTTCTCTTTTT-TTTT
1 TTTTTTTCTCTTTTTGTTTT
*
801463 TCTTTTTTTTCTTTTTGTTTT
1 T-TTTTTTCTCTTTTTGTTTT
801484 TTTTT
1 TTTTT
801489 ATGATAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 1 0.04
20 17 0.74
21 5 0.22
ACGTcount: A:0.00, C:0.09, G:0.02, T:0.89
Consensus pattern (20 bp):
TTTTTTTCTCTTTTTGTTTT
Found at i:801472 original size:22 final size:23
Alignment explanation
Indices: 801444--801486 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
801434 CTAATAACTA
801444 TTTTTTTCTCTTT-TTTTTTTCT
1 TTTTTTTCTCTTTGTTTTTTTCT
*
801466 TTTTTTTCTTTTTGTTTTTTT
1 TTTTTTTCTCTTTGTTTTTTT
801487 TTATGATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.00, C:0.09, G:0.02, T:0.88
Consensus pattern (23 bp):
TTTTTTTCTCTTTGTTTTTTTCT
Found at i:802974 original size:33 final size:35
Alignment explanation
Indices: 802923--802993 Score: 92
Period size: 33 Copynumber: 2.1 Consensus size: 35
802913 TATACTCATA
* *
802923 TGAATGACTCCGATGACACCATG-AAAATGG-CTT
1 TGAATAACTCCGACGACACCATGAAAAATGGCCTT
* *
802956 TGAATAACTTCGACGACACTATGAAAAATGGCCTT
1 TGAATAACTCCGACGACACCATGAAAAATGGCCTT
802991 TGA
1 TGA
802994 TGACTTTTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 19 0.59
34 7 0.22
35 6 0.19
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (35 bp):
TGAATAACTCCGACGACACCATGAAAAATGGCCTT
Found at i:804811 original size:19 final size:19
Alignment explanation
Indices: 804766--804816 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 19
804756 CACACCCAGA
804766 TGTATCGATACATATTGCCT
1 TGTATCGATACATATT-CCT
*
804786 TGTATCGATACATGTT-CT
1 TGTATCGATACATATTCCT
804804 TGGTATCGATACA
1 T-GTATCGATACA
804817 CACTGAATTG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 3 0.10
19 11 0.38
20 15 0.52
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.39
Consensus pattern (19 bp):
TGTATCGATACATATTCCT
Found at i:807547 original size:13 final size:13
Alignment explanation
Indices: 807529--807555 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
807519 ATATATTGCC
807529 TTGTATCGATACA
1 TTGTATCGATACA
807542 TTGTATCGATACA
1 TTGTATCGATACA
807555 T
1 T
807556 GTTCTTGGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:807659 original size:13 final size:13
Alignment explanation
Indices: 807622--807692 Score: 73
Period size: 13 Copynumber: 5.9 Consensus size: 13
807612 AACTTACTCA
* *
807622 GTATCGATATAGT
1 GTATCGATACATT
807635 GTATCGATACATT
1 GTATCGATACATT
*
807648 GTATCGATACATG
1 GTATCGATACATT
807661 GTA---A-A-A-T
1 GTATCGATACATT
807668 GTATCGATACATT
1 GTATCGATACATT
807681 GTATCGATACAT
1 GTATCGATACAT
807693 GGTAAAATGT
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
7 3 0.06
8 1 0.02
9 1 0.02
10 2 0.04
11 1 0.02
12 1 0.02
13 39 0.81
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.35
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:807672 original size:20 final size:20
Alignment explanation
Indices: 807647--807712 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
807637 ATCGATACAT
807647 TGTATCGATACATGGTAAAA
1 TGTATCGATACATGGTAAAA
807667 TGTATCGATACA---T----
1 TGTATCGATACATGGTAAAA
807680 TGTATCGATACATGGTAAAA
1 TGTATCGATACATGGTAAAA
807700 TGTATCGATACAT
1 TGTATCGATACAT
807713 TGAGCCCAAC
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 12 0.31
16 1 0.03
17 1 0.03
20 25 0.64
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.33
Consensus pattern (20 bp):
TGTATCGATACATGGTAAAA
Found at i:807676 original size:33 final size:33
Alignment explanation
Indices: 807634--807714 Score: 162
Period size: 33 Copynumber: 2.5 Consensus size: 33
807624 ATCGATATAG
807634 TGTATCGATACATTGTATCGATACATGGTAAAA
1 TGTATCGATACATTGTATCGATACATGGTAAAA
807667 TGTATCGATACATTGTATCGATACATGGTAAAA
1 TGTATCGATACATTGTATCGATACATGGTAAAA
807700 TGTATCGATACATTG
1 TGTATCGATACATTG
807715 AGCCCAACGA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 48 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.35
Consensus pattern (33 bp):
TGTATCGATACATTGTATCGATACATGGTAAAA
Found at i:810665 original size:20 final size:19
Alignment explanation
Indices: 810640--810695 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
810630 TTTTGCCTAC
810640 ATGTATCGATACATTAAATA
1 ATGTATCGATACATTAAA-A
* * *
810660 ATGTATCGATATAATGAGAA
1 ATGTATCGATA-CATTAAAA
810680 ATGTATCGATACATTA
1 ATGTATCGATACATTA
810696 CCGTAGCAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
19 3 0.10
20 23 0.77
21 4 0.13
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34
Consensus pattern (19 bp):
ATGTATCGATACATTAAAA
Found at i:812076 original size:33 final size:32
Alignment explanation
Indices: 812020--812087 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 32
812010 CCTTAACTGT
*
812020 TTGTATCGATACATACAAAATGTATCGATACA
1 TTGTATCAATACATACAAAATGTATCGATACA
* *
812052 TTGTATCAATAGATGACCAAATGTATCGATACA
1 TTGTATCAATACAT-ACAAAATGTATCGATACA
812085 TTG
1 TTG
812088 GCTTGTAACG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 12 0.38
33 20 0.62
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (32 bp):
TTGTATCAATACATACAAAATGTATCGATACA
Found at i:818253 original size:13 final size:13
Alignment explanation
Indices: 818235--818272 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
818225 CAGTATTCTC
*
818235 TGTATCGATACAT
1 TGTATCGATACAG
*
818248 TGTATCGATATAG
1 TGTATCGATACAG
818261 TGTATCGATACA
1 TGTATCGATACA
818273 AAGGGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:820843 original size:13 final size:13
Alignment explanation
Indices: 820825--820852 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
820815 ACATACAAAA
820825 TGTATCGATACAT
1 TGTATCGATACAT
820838 TGTATCGATACAT
1 TGTATCGATACAT
820851 TG
1 TG
820853 GCTTGTAACG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:822323 original size:80 final size:80
Alignment explanation
Indices: 822223--822456 Score: 233
Period size: 80 Copynumber: 2.9 Consensus size: 80
822213 ACCGAGGTTG
* *
822223 AAGTATCC-CCTCGGAGATGGTGGGGTTGGAGTATCCCCAAAGATGAAAAATTTAATATTATGA-
1 AAGTA-CCTCCTCAGAGATGGTGGGGTTGGAGTATCCCCAGAGATGAAAAATTTAATATT-TGAG
822286 AAGTAAAAATAGGG-TTA
64 AAGTAAAAAT-GGGATTA
* * * * * * * * *
822303 GAGTATCTCGTCAGAGATGGTTGGGTTGGAGCATCCCTAGAGATGAAAATTTTAATATTTTAGGA
1 AAGTACCTCCTCAGAGATGGTGGGGTTGGAGTATCCCCAGAGATGAAAAATTTAATATTTGAGAA
822368 GTAAAAATGGGATTA
66 GTAAAAATGGGATTA
* * * * * * * *
822383 AAGTACCTCCTTAAAGATGGTGGGGTTAGAATATCCCCAGAGATGAAACATTCAGTGTATTG-GA
1 AAGTACCTCCTCAGAGATGGTGGGGTTGGAGTATCCCCAGAGATGAAAAATTTAATAT-TTGAGA
822447 AGTAAAAATG
65 AGTAAAAATG
822457 ATGTTAGAGT
Statistics
Matches: 122, Mismatches: 28, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
79 6 0.05
80 114 0.93
81 2 0.02
ACGTcount: A:0.35, C:0.11, G:0.26, T:0.28
Consensus pattern (80 bp):
AAGTACCTCCTCAGAGATGGTGGGGTTGGAGTATCCCCAGAGATGAAAAATTTAATATTTGAGAA
GTAAAAATGGGATTA
Found at i:822679 original size:79 final size:79
Alignment explanation
Indices: 822578--822723 Score: 168
Period size: 79 Copynumber: 1.8 Consensus size: 79
822568 AGTGTTTTAA
* * * * *
822578 AAGTAAAAATGGGGTTAAAGTATCCCCTC-AGAATGGTGGGGTTGGAGTATCCCCAAAGATGAAG
1 AAGTAAAAATGGGATTAAAGTATCCCCTCAAAAATGATGGGGTTAGAGTAT-CCCAAAGATAAAG
822642 AAACTATGTGTTCTG
65 AAACTATGTGTTCTG
* ** * ** *
822657 AAGTTAAAATGGGATTGGAGTATTCTTTCAAAAATGATGGGGTTAGAGTATCCCAGAGATAAAGA
1 AAGTAAAAATGGGATTAAAGTATCCCCTCAAAAATGATGGGGTTAGAGTATCCCAAAGATAAAGA
822722 AA
66 AA
822724 TTCAATGTTT
Statistics
Matches: 54, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
79 36 0.67
80 18 0.33
ACGTcount: A:0.36, C:0.11, G:0.27, T:0.26
Consensus pattern (79 bp):
AAGTAAAAATGGGATTAAAGTATCCCCTCAAAAATGATGGGGTTAGAGTATCCCAAAGATAAAGA
AACTATGTGTTCTG
Found at i:825871 original size:70 final size:67
Alignment explanation
Indices: 825788--826853 Score: 643
Period size: 70 Copynumber: 15.4 Consensus size: 67
825778 TGAAACAGAT
* * *
825788 AGGTGCC-CCAACTTGTATGGGCTTTGAGAAAGAAAAAGAGTCTTGTTCTTTGAGGACAAAAGGG
1 AGGTGCCACCAGCTTGTATGGGCTTT-A-AAAGAAAAAGAGTCCTGCTCTTTGAGGACAAAA-GG
825852 ATAAA
63 ATAAA
* *
825857 AGGTGCCACCAACTTGTATGGGCTTTAAAAGGAAAAAGCA-TCCTGCTCTTTGAGGAAAAAAGGA
1 AGGTGCCACCAGCTTGTATGGGCTTTAAAA-GAAAAAG-AGTCCTGCTCTTTGAGGACAAAAGGA
825921 TAAA
64 TAAA
* * * *
825925 AGGTGCCACCAGCTTGTAAGAGCTTTGAAAAGAAAAATACGTCCTGTTCTTTGAGGACAAAAAGG
1 AGGTGCCACCAGCTTGTATGGGCTTT-AAAAGAAAAAGA-GTCCTGCTCTTTGAGGAC-AAAAGG
825990 ATAAA
63 ATAAA
* *
825995 AGGTGCCACCAGCTTGTATAGGCTTTAAAAGGAAAAAGCA-TCCTGCTCTTTGAGGA-AGAAGGA
1 AGGTGCCACCAGCTTGTATGGGCTTTAAAA-GAAAAAG-AGTCCTGCTCTTTGAGGACAAAAGGA
826058 TAAA
64 TAAA
* * *
826062 AGGTGCCACCAGCTTGTAAGAGCTTTAAAAAGAAAAAG-GCATCCTACTCTTTGAGGACTAAAAG
1 AGGTGCCACCAGCTTGTATGGGCTTT-AAAAGAAAAAGAG--TCCTGCTCTTTGAGGAC-AAAAG
826126 GATAAA
62 GATAAA
* * * * * ** ** *
826132 AGTTGCCACCAGCTTGTGTGGACTTT-TAAG-AAAGGCTTTTTACTCTTTGAGGACTGAAAA-GA
1 AGGTGCCACCAGCTTGTATGGGCTTTAAAAGAAAAAGAGTCCTGCTCTTTGAGGAC--AAAAGGA
826194 TAAA
64 TAAA
* * * * * * *
826198 AGGTACCACCAGCTTGTGTAGGCTTTAAAAAGAAAAA-AGCATCCTGCTCCTTAAAGACTGAAAG
1 AGGTGCCACCAGCTTGTATGGGCTTT-AAAAGAAAAAGAG--TCCTGCTCTTTGAGGAC-AAAAG
826262 GATAAA
62 GATAAA
* * * * * * * *
826268 AAGTGCCCCCAACTTGTGTGGGCTTT--TA-AAAAAGCA-TCCTACTCTTTGAAGACTAAAAAGA
1 AGGTGCCACCAGCTTGTATGGGCTTTAAAAGAAAAAG-AGTCCTGCTCTTTGAGGAC-AAAAGGA
826329 TAAA
64 TAAA
* * * * * * **
826333 AAGTGCCACCAACTTGTGTGGGCTTTAAAAAAAAAAAGACATCCTGCTCTTTGAAGATTGAAAGG
1 AGGTGCCACCAGCTTGTATGGGCTTT-AAAAGAAAAAGA-GTCCTGCTCTTTGAGGA-CAAAAGG
*
826398 ATAAT
63 ATAAA
* * * *
826403 AGGAGCCACCAGCTTGTA----CTTTAAAAAGAAAAA-AGGCATCTTACTTTTTGAGGACTAAAA
1 AGGTGCCACCAGCTTGTATGGGCTTT-AAAAGAAAAAGA-G--TCCTGCTCTTTGAGGAC-AAAA
** *
826463 ATAGAAA
61 GGATAAA
* * * * *
826470 AGGGTATGCCACCAACTTGTGTGGGCTTTAGAAAAAAGAAAAGACGTCTTGCTCTTTCAGGACTA
1 A-GG--TGCCACCAGCTTGTATGGGCTTT--AAAAGA-AAAAGA-GTCCTGCTCTTTGAGGAC-A
826535 AAAGGATAAA
58 AAAGGATAAA
* * * * *
826545 AGATGCCACCAACTTATGTGGGCTTTAAAAGGAAAAG-GCATCCTGCTCTTTGAAGAGTA-AAAA
1 AGGTGCCACCAGCTTGTATGGGCTTTAAAAGAAAAAGAG--TCCTGCTCTTTG-AG-G-ACAAAA
*
826608 TAGATAAA
61 -GGATAAA
* * * * * *
826616 ACGGGTGTCACCAGCTTGCATGAGCTTTAAAAGAAAAA-ACATCTTGCTCTTTAAGGACTAAAAG
1 A--GGTGCCACCAGCTTGTATGGGCTTTAAAAGAAAAAGA-GTCCTGCTCTTTGAGGAC-AAAAG
826680 G-TAAA
62 GATAAA
* * * * * * * * *
826685 AAGTGCCA-TAGCATGTGTGGGCTTTAAAAGAAAAAGGTGTCTTGTTTTTTGAGGACTAAAAAAT
1 AGGTGCCACCAGCTTGTATGGGCTTTAAAAGAAAAA-GAGTCCTGCTCTTTGAGGAC---AAAAG
826749 GATAAAA
62 GAT-AAA
* ** *
826756 AGGGTGCCACTAGCTTGTATGGGCTTTAAAAGAAAAAG-GATCCTATTCTTTAAGGACTAAAA-G
1 A-GGTGCCACCAGCTTGTATGGGCTTTAAAAGAAAAAGAG-TCCTGCTCTTTGAGGAC-AAAAGG
*
826819 CTAAA
63 ATAAA
* * * *
826824 ATGTGCCACCAACTTGTGTGGGATTTAAAA
1 AGGTGCCACCAGCTTGTATGGGCTTTAAAA
826854 AGAGTTTAAG
Statistics
Matches: 790, Mismatches: 141, Indels: 134
0.74 0.13 0.13
Matches are distributed among these distances:
65 50 0.06
66 84 0.11
67 113 0.14
68 73 0.09
69 111 0.14
70 194 0.25
71 20 0.03
72 53 0.07
73 52 0.07
74 5 0.01
75 29 0.04
76 4 0.01
77 2 0.00
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (67 bp):
AGGTGCCACCAGCTTGTATGGGCTTTAAAAGAAAAAGAGTCCTGCTCTTTGAGGACAAAAGGATA
AA
Found at i:826047 original size:138 final size:137
Alignment explanation
Indices: 825788--826853 Score: 873
Period size: 137 Copynumber: 7.7 Consensus size: 137
825778 TGAAACAGAT
* * * * *
825788 AGGTGCC-CCAACTTGTATGGGCTTTGAGAAAGAAAAAGA-GTCTTGTTCTTTGAGGAC-AAAAG
1 AGGTGCCACCAGCTTGTATGGGCTTT-AAAAAGAAAAAGACATCCTGCTCTTTGAGGACTAAAA-
*
825850 GGATAAAAGGTGCCACCAACTTGTATGGGCTTTAAAAGGAAAAAGCATCCTGCTCTTTGAGGAAA
64 GGATAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAAGCATCCTGCTCTTTGAGGAAA
825915 AAAGGATAAA
129 AAA-GATAAA
* * * * * * *
825925 AGGTGCCACCAGCTTGTAAGAGCTTTGAAAAGAAAAATACGTCCTGTTCTTTGAGGACAAAAAGG
1 AGGTGCCACCAGCTTGTATGGGCTTTAAAAAGAAAAAGACATCCTGCTCTTTGAGGACTAAAAGG
* * * *
825990 ATAAAAGGTGCCACCAGCTTGTATAGGCTTTAAAAGGAAAAAGCATCCTGCTCTTTGAGGAAGAA
66 ATAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAAGCATCCTGCTCTTTGAGGAAAAA
*
826055 GGATAAA
131 AGATAAA
* * * *
826062 AGGTGCCACCAGCTTGTAAGAGCTTTAAAAAGAAAAAGGCATCCTACTCTTTGAGGACTAAAAGG
1 AGGTGCCACCAGCTTGTATGGGCTTTAAAAAGAAAAAGACATCCTGCTCTTTGAGGACTAAAAGG
* * * * * * ** * *
826127 ATAAAAGTTGCCACCAGCTTGTGTGGACTTT-TAA-G-AAAGGCTTTTTACTCTTTGAGGACTGA
66 ATAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAAGCATCCTGCTCTTTGAGGA--AA
826189 AAAGATAAA
129 AAAGATAAA
* * * * * * *
826198 AGGTACCACCAGCTTGTGTAGGCTTTAAAAAGAAAAA-AGCATCCTGCTCCTTAAAGACTGAAAG
1 AGGTGCCACCAGCTTGTATGGGCTTTAAAAAGAAAAAGA-CATCCTGCTCTTTGAGGACTAAAAG
* * * * *
826262 GATAAAAAGTGCCCCCAACTTGTGTGGGCTTT--TA--AAAAAGCATCCTACTCTTTGAAGACTA
65 GATAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAAGCATCCTGCTCTTTGAGGA--A
826323 AAAAGATAAA
128 AAAAGATAAA
* * * * * * *
826333 AAGTGCCACCAACTTGTGTGGGCTTTAAAAAAAAAAAGACATCCTGCTCTTTGAAGATTGAAAGG
1 AGGTGCCACCAGCTTGTATGGGCTTTAAAAAGAAAAAGACATCCTGCTCTTTGAGGACTAAAAGG
* * * * * * * *
826398 ATAATAGGAGCCACCAGC-T-TGT--ACTTTAAAAAGAAAAAAGGCATCTTACTTTTTGAGGACT
66 ATAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAA-GCATCCTGCTCTTTGAGGA--
* *
826459 AAAAATAGAAA
127 AAAAAGATAAA
* * * * * *
826470 AGGGTATGCCACCAACTTGTGTGGGCTTTAGAAAAAAGAAAAGACGTCTTGCTCTTTCAGGACTA
1 A-GG--TGCCACCAGCTTGTATGGGCTTTA-AAAAGA-AAAAGACATCCTGCTCTTTGAGGACTA
* * *
826535 AAAGGATAAAAGATGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAAG
61 AAAGGATAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAAGCATCCTGCTCTTTG-AG
826600 AGTAAAAATAGATAAA
125 -G-AAAAA-AGATAAA
* * * * *
826616 ACGGGTGTCACCAGCTTGCATGAGCTTT-AAAAGAAAAA-ACATCTTGCTCTTTAAGGACTAAAA
1 A--GGTGCCACCAGCTTGTATGGGCTTTAAAAAGAAAAAGACATCCTGCTCTTTGAGGACTAAAA
* * * * ** * * *
826679 GG-TAAAAAGTGCCA-TAGCATGTGTGGGCTTTAAAA-GAAAAAGGTGTCTTGTTTTTTGAGGAC
64 GGATAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAA-GCATCCTGCTCTTTGAGG--
826741 TAAAAAATGATAAAA
126 -AAAAAA-GAT-AAA
* * ** *
826756 AGGGTGCCACTAGCTTGTATGGGCTTT-AAAAGAAAAAG-GATCCTATTCTTTAAGGACTAAAA-
1 A-GGTGCCACCAGCTTGTATGGGCTTTAAAAAGAAAAAGACATCCTGCTCTTTGAGGACTAAAAG
* * *
826818 GCTAAAATGTGCCACCAACTTGTGTGGGATTTAAAA
65 GATAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA
826854 AGAGTTTAAG
Statistics
Matches: 767, Mismatches: 126, Indels: 69
0.80 0.13 0.07
Matches are distributed among these distances:
131 4 0.01
133 3 0.00
134 20 0.03
135 100 0.13
136 95 0.12
137 137 0.18
138 106 0.14
139 103 0.13
140 55 0.07
141 31 0.04
142 44 0.06
143 6 0.01
144 15 0.02
145 33 0.04
146 11 0.01
147 4 0.01
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (137 bp):
AGGTGCCACCAGCTTGTATGGGCTTTAAAAAGAAAAAGACATCCTGCTCTTTGAGGACTAAAAGG
ATAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAAGCATCCTGCTCTTTGAGGAAAAA
AGATAAA
Found at i:839354 original size:80 final size:80
Alignment explanation
Indices: 839088--839540 Score: 262
Period size: 80 Copynumber: 5.7 Consensus size: 80
839078 GTGAAAATCG
* * * * * * * *
839088 AGGTTGGAGTATCCCCTTAGAGATGGTAGCATTGGGGTATCCCCAAAAATGAAAAATTT-GATAT
1 AGGTTGGAGTATCCCCTCAAAAATGGTGGGATTAGAGTATCCCCAAAAATGAAAAATTTAG-TGT
* * *
839152 TATGGAAGTAAAAATA
65 TTTGAAAGTAAAAACA
** * * * * * * *
839168 AGGTTGGAGTATCCTTTCAAAGATGGT-AGAGTTGGAGTATCCCTAGAGATG-AAAATTTCAATG
1 AGGTTGGAGTATCCCCTCAAAAATGGTGGGA-TTAGAGTATCCCCAAAAATGAAAAATTT-AGTG
*
839231 TTTT-AGAAGTAAAAATA
64 TTTTGA-AAGTAAAAACA
* * * * * *
839248 GGGTTGGAGTACCCCCTTAGAGATGGTGGGATTAGAGTATCTCCAAAAATGAAAAATTTAGTGTT
1 AGGTTGGAGTATCCCCTCAAAAATGGTGGGATTAGAGTATCCCCAAAAATGAAAAATTTAGTGTT
*
839313 TTGAAAATAAAAACA
66 TTGAAAGTAAAAACA
* * * * * * * *
839328 AGGTTGGAGTATCCTCTCGAAAATGGTGGGGTT-GCAGTAT--CTAAGAGATGAAAAAATCATTG
1 AGGTTGGAGTATCCCCTCAAAAATGGTGGGATTAG-AGTATCCCCAA-AAATGAAAAATTTAGTG
**
839390 TTGGGGAAA-TAAAAACA
64 TT-TTGAAAGTAAAAACA
* ** * * * ** *
839407 TGGTTAAAGTATCCCCTTAAAAATTGGGGGGGTTAGAGTATCCCCTGAAATGAAAATTTTAGTGT
1 AGGTTGGAGTATCCCCTCAAAAA-TGGTGGGATTAGAGTATCCCCAAAAATGAAAAATTTAGTGT
839472 TTT-AGAAGTAAAAA-A
65 TTTGA-AAGTAAAAACA
* * * *
839487 GGGATTGGAGCATCCCCTCAAAAATGGTAGGG-TTGGAGTATCCCCCGAAAATGA
1 AGG-TTGGAGTATCCCCTCAAAAATGGT-GGGATTAGAGTAT-CCCCAAAAATGA
839541 TGGGGCTACA
Statistics
Matches: 284, Mismatches: 70, Indels: 37
0.73 0.18 0.09
Matches are distributed among these distances:
78 3 0.01
79 50 0.18
80 170 0.60
81 60 0.21
82 1 0.00
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.28
Consensus pattern (80 bp):
AGGTTGGAGTATCCCCTCAAAAATGGTGGGATTAGAGTATCCCCAAAAATGAAAAATTTAGTGTT
TTGAAAGTAAAAACA
Found at i:839445 original size:160 final size:156
Alignment explanation
Indices: 839124--839528 Score: 409
Period size: 160 Copynumber: 2.5 Consensus size: 156
839114 TAGCATTGGG
* * * *
839124 GTATCCCCAAAAATGAAAAATTT-GATATTATGGAAGTAAAAATAAGGTTGGAGTATCCTTTCAA
1 GTATCCCCAAAAATGAAAAATTTAG-TGTTTTGAAAGTAAAAA-AAGGTTGGAGTATCCTCTCAA
* ** ** * *
839188 AGATGGTAGAGTTGGAGTATCCCTAGAGATGAAAATTTCAATGTTTTAGAAGTAAAAATAGGGTT
64 A-ATGGTAGGGTTGGAGTAT--CTAGAGATGAAAAAATCAATGTTGGAGAAATAAAAACAGGGTT
** * * *
839253 GGAGTACCCCCTTAGAGATGGTGGGATTAGA
126 AAAGTACCCCCTTAAAAATGGGGGGATTAGA
* *
839284 GTATCTCCAAAAATGAAAAATTTAGTGTTTTGAAAATAAAAACAAGGTTGGAGTATCCTCTCGAA
1 GTATCCCCAAAAATGAAAAATTTAGTGTTTTGAAAGTAAAAA-AAGGTTGGAGTATCCTCTC-AA
* * * * *
839349 AATGGTGGGGTTGCAGTATCTAAGAGATGAAAAAATCATTGTTGGGGAAATAAAAACATGGTTAA
64 AATGGTAGGGTTGGAGTATCT-AGAGATGAAAAAATCAATGTTGGAGAAATAAAAACAGGGTTAA
* *
839414 AGTATCCCCTTAAAAATTGGGGGGGTTAGA
128 AGTACCCCCTTAAAAA-TGGGGGGATTAGA
** * * * *
839444 GTATCCCCTGAAATGAAAATTTTAGTGTTTT-AGAAGTAAAAAAGGGATTGGAGCATCCCCTCAA
1 GTATCCCCAAAAATGAAAAATTTAGTGTTTTGA-AAGTAAAAAAAGG-TTGGAGTATCCTCTC-A
839508 AAATGGTAGGGTTGGAGTATC
63 AAATGGTAGGGTTGGAGTATC
839529 CCCCGAAAAT
Statistics
Matches: 202, Mismatches: 37, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
158 2 0.01
159 49 0.24
160 147 0.73
161 4 0.02
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.28
Consensus pattern (156 bp):
GTATCCCCAAAAATGAAAAATTTAGTGTTTTGAAAGTAAAAAAAGGTTGGAGTATCCTCTCAAAA
TGGTAGGGTTGGAGTATCTAGAGATGAAAAAATCAATGTTGGAGAAATAAAAACAGGGTTAAAGT
ACCCCCTTAAAAATGGGGGGATTAGA
Found at i:839523 original size:28 final size:28
Alignment explanation
Indices: 839486--839539 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
839476 GAAGTAAAAA
839486 AGGGATTGGAGCATCCCCTCAAAAATGGT
1 AGGGATTGGAGCATCCCC-CAAAAATGGT
* *
839515 AGGG-TTGGAGTATCCCCCGAAAATG
1 AGGGATTGGAGCATCCCCCAAAAATG
839540 ATGGGGCTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 7 0.30
28 12 0.52
29 4 0.17
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.20
Consensus pattern (28 bp):
AGGGATTGGAGCATCCCCCAAAAATGGT
Found at i:841446 original size:36 final size:31
Alignment explanation
Indices: 841363--841449 Score: 86
Period size: 36 Copynumber: 2.6 Consensus size: 31
841353 ATCTTACAAC
841363 TTTC-AAGGCTAAGATAGAAACCTTCCTATCT
1 TTTCAAAGGCTAAGATAG-AACCTTCCTATCT
** *
841394 TTTCACGGGCTTAGATAGAACCTTTTTCCCTATCTT
1 TTTCAAAGGCTAAGATAGAACC---TT-CCTATC-T
841430 TTTCAAAGGCTAAGATAGAA
1 TTTCAAAGGCTAAGATAGAA
841450 TCTCTCAATC
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
31 8 0.18
32 10 0.23
34 2 0.05
35 6 0.14
36 18 0.41
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (31 bp):
TTTCAAAGGCTAAGATAGAACCTTCCTATCT
Found at i:841919 original size:13 final size:13
Alignment explanation
Indices: 841901--841925 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
841891 ATAATATATC
841901 GATACAATGTATT
1 GATACAATGTATT
841914 GATACAATGTAT
1 GATACAATGTAT
841926 CGAATTATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (13 bp):
GATACAATGTATT
Found at i:841957 original size:14 final size:14
Alignment explanation
Indices: 841938--841964 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
841928 AATTATATCG
841938 ATACATGAACAGTA
1 ATACATGAACAGTA
841952 ATACATGAACAGT
1 ATACATGAACAGT
841965 GATGAATAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.15, G:0.15, T:0.22
Consensus pattern (14 bp):
ATACATGAACAGTA
Found at i:842824 original size:27 final size:27
Alignment explanation
Indices: 842793--842846 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
842783 TTGTGAAACA
***
842793 TCTCTTTTCTCCTTTTTTCTATTAGGC
1 TCTCTTTTCTCCCCCTTTCTATTAGGC
842820 TCTCTTTTCTCCCCCTTTCTATTAGGC
1 TCTCTTTTCTCCCCCTTTCTATTAGGC
842847 CAAATCTATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.07, C:0.31, G:0.07, T:0.54
Consensus pattern (27 bp):
TCTCTTTTCTCCCCCTTTCTATTAGGC
Found at i:842930 original size:30 final size:30
Alignment explanation
Indices: 842895--842951 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
842885 ATACCAAAAG
* * *
842895 TTTATGGAAGCTCTCCCCCTTAATACAAAT
1 TTTATGCAAACTCTACCCCTTAATACAAAT
842925 TTTATGCAAACTCTACCCCTTAATACA
1 TTTATGCAAACTCTACCCCTTAATACA
842952 TTCTCACCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.33
Consensus pattern (30 bp):
TTTATGCAAACTCTACCCCTTAATACAAAT
Found at i:845194 original size:20 final size:20
Alignment explanation
Indices: 845153--845208 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
845143 TAGTTGCAAC
**
845153 TCATTTATTTTCTCCACTAAT
1 TCATTTATTTTCT-TTCTAAT
845174 TCATTTATTTTCTTTCTAAT
1 TCATTTATTTTCTTTCTAAT
*
845194 TCATTTAATTTCTTT
1 TCATTTATTTTCTTT
845209 TCAAGAACAT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
20 19 0.59
21 13 0.41
ACGTcount: A:0.21, C:0.18, G:0.00, T:0.61
Consensus pattern (20 bp):
TCATTTATTTTCTTTCTAAT
Found at i:846799 original size:30 final size:31
Alignment explanation
Indices: 846763--846858 Score: 97
Period size: 36 Copynumber: 3.0 Consensus size: 31
846753 CCTTACAACA
846763 CTATC-TTTC-CAGGCTAAGATAGAAACCTCC
1 CTATCTTTTCACAGGCTAAGATAG-AACCTCC
*
846793 CTATCTTTTCACGGGCTAAGATAGAACCTCTCTCC
1 CTATCTTTTCACAGGCTAAGATAGAA---C-CTCC
* *
846828 CTATCTTTTTCAAAGGCTGAGATAGAACCTC
1 CTATC-TTTTCACAGGCTAAGATAGAACCTC
846859 TCAATTACTT
Statistics
Matches: 55, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
30 5 0.09
31 6 0.11
32 15 0.27
33 1 0.02
34 1 0.02
35 9 0.16
36 18 0.33
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (31 bp):
CTATCTTTTCACAGGCTAAGATAGAACCTCC
Found at i:846813 original size:32 final size:33
Alignment explanation
Indices: 846773--846858 Score: 95
Period size: 32 Copynumber: 2.6 Consensus size: 33
846763 CTATCTTTCC
*
846773 AGGCTAAGATAGAAACCTCCCTATC-TTTTCAC
1 AGGCTAAGATAGAAACCTCCCTATCTTTTTCAA
* *
846805 GGGCTAAGATAGAACCTCTCTCCCTATCTTTTTCAA
1 AGGCTAAGATAGAA--AC-CTCCCTATCTTTTTCAA
*
846841 AGGCTGAGATAG-AACCTC
1 AGGCTAAGATAGAAACCTC
846859 TCAATTACTT
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
32 16 0.36
33 1 0.02
34 1 0.02
35 10 0.23
36 16 0.36
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (33 bp):
AGGCTAAGATAGAAACCTCCCTATCTTTTTCAA
Found at i:846851 original size:36 final size:35
Alignment explanation
Indices: 846773--846860 Score: 110
Period size: 36 Copynumber: 2.6 Consensus size: 35
846763 CTATCTTTCC
* *
846773 AGGCTAAGATAGAA--AC-CTCCCTATCTTTTCAC
1 AGGCTAAGATAGAACCTCTCTCCCTATCTTTTCAA
*
846805 GGGCTAAGATAGAACCTCTCTCCCTATCTTTTTCAA
1 AGGCTAAGATAGAACCTCTCTCCCTATC-TTTTCAA
*
846841 AGGCTGAGATAGAACCTCTC
1 AGGCTAAGATAGAACCTCTC
846861 AATTACTTAG
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
32 13 0.28
34 1 0.02
35 9 0.19
36 24 0.51
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.28
Consensus pattern (35 bp):
AGGCTAAGATAGAACCTCTCTCCCTATCTTTTCAA
Found at i:848535 original size:13 final size:13
Alignment explanation
Indices: 848519--848543 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
848509 TTGATGTTTC
848519 TTTTTGTTCTTTT
1 TTTTTGTTCTTTT
848532 TTTTTGTTCTTT
1 TTTTTGTTCTTT
848544 AGTTGTTGGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.08, T:0.84
Consensus pattern (13 bp):
TTTTTGTTCTTTT
Found at i:848856 original size:19 final size:20
Alignment explanation
Indices: 848832--848879 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
848822 ATTCTTCATA
* *
848832 TATCGATATAATG-AACATG
1 TATCGATACAAAGCAACATG
*
848851 TATCGATACAAAGCAATATG
1 TATCGATACAAAGCAACATG
848871 TATCGATAC
1 TATCGATAC
848880 TTCTGGGCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 11 0.44
20 14 0.56
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.29
Consensus pattern (20 bp):
TATCGATACAAAGCAACATG
Found at i:849774 original size:20 final size:20
Alignment explanation
Indices: 849749--849796 Score: 71
Period size: 20 Copynumber: 2.4 Consensus size: 20
849739 TATTACAAGC
849749 ATGTATCGATACATTC-ACTT
1 ATGTATCGATACA-TCAACTT
849769 ATGTATCGATACATCAACTT
1 ATGTATCGATACATCAACTT
849789 ATTGTATC
1 A-TGTATC
849797 AATAGAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 18 0.69
21 6 0.23
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATCAACTT
Found at i:855379 original size:13 final size:13
Alignment explanation
Indices: 855361--855385 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
855351 CATTTCACCA
855361 TGTATCGATACAT
1 TGTATCGATACAT
855374 TGTATCGATACA
1 TGTATCGATACA
855386 CTATATCAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:855468 original size:33 final size:33
Alignment explanation
Indices: 855426--855489 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
855416 TACCAGTTTT
* *
855426 ATGTATCGATAC-AATTCAATGTGTATCGATATA
1 ATGTATCGATACTAA-GCAATATGTATCGATATA
855459 ATGTATCGATACTAAGCAATATGTATCGATA
1 ATGTATCGATACTAAGCAATATGTATCGATA
855490 CATCTGGGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 26 0.93
34 2 0.07
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (33 bp):
ATGTATCGATACTAAGCAATATGTATCGATATA
Found at i:862030 original size:20 final size:20
Alignment explanation
Indices: 862005--862057 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
861995 TCCCGTAGCT
862005 ATGTATCGATACAATTCATA
1 ATGTATCGATACAATTCATA
862025 ATGTATCGATACAATTCATA
1 ATGTATCGATACAATTCATA
*
862045 AAGTATCGATACA
1 ATGTATCGATACA
862058 TGCATTTGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.32
Consensus pattern (20 bp):
ATGTATCGATACAATTCATA
Found at i:862236 original size:19 final size:20
Alignment explanation
Indices: 862192--862247 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 20
862182 CTGCCCGTTT
* *
862192 CATGTATCGATACAATTATG
1 CATGTATCGATACAATGATA
*
862212 CATGTATCGATACAGTGA-A
1 CATGTATCGATACAATGATA
862231 CATGTATCGATACAATG
1 CATGTATCGATACAATG
862248 TATCGATACA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (20 bp):
CATGTATCGATACAATGATA
Found at i:862250 original size:13 final size:13
Alignment explanation
Indices: 862232--862258 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
862222 TACAGTGAAC
862232 ATGTATCGATACA
1 ATGTATCGATACA
862245 ATGTATCGATACA
1 ATGTATCGATACA
862258 A
1 A
862259 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:863268 original size:33 final size:33
Alignment explanation
Indices: 863203--863269 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
863193 AAGTGCACCA
* * *
863203 AAGTGCTCATTCATGTGCTGCGAGAGTGAAGTG
1 AAGTGCTCACTCATGTGCTGCGAAAGTAAAGTG
* *
863236 AAGTGCTCACTCATGTGTTGTGAAAGTAAAGTG
1 AAGTGCTCACTCATGTGCTGCGAAAGTAAAGTG
863269 A
1 A
863270 TCAACTCTCG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.28
Consensus pattern (33 bp):
AAGTGCTCACTCATGTGCTGCGAAAGTAAAGTG
Found at i:870011 original size:13 final size:13
Alignment explanation
Indices: 869993--870017 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
869983 TTAGAAGCAA
869993 TGTATCGATACAT
1 TGTATCGATACAT
870006 TGTATCGATACA
1 TGTATCGATACA
870018 ATGTGCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Done.