genome.fa.s2072.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2072
Parameters: 2 7 7 80 10 50 1000
Length:  40451

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38--63	13	2.0	13	100	0	52	30	15	15	38	1.88
145--175	13	2.4	13	94	0	53	35	16	12	35	1.87
129--195	33	2.0	32	86	11	91	37	13	16	32	1.88
3638--3690	20	2.6	21	87	6	81	35	13	18	32	1.90
3736--3794	22	2.8	21	85	7	84	32	16	13	37	1.88
10894--10926	17	1.9	17	93	0	57	66	12	12	9	1.44
10895--10933	17	2.3	17	86	0	51	71	12	10	5	1.28
12423--12782	42	8.7	41	75	8	250	18	24	14	42	1.88
12395--12782	84	4.7	83	75	12	325	19	24	14	42	1.88
12634--12799	86	1.9	87	82	6	212	18	24	15	42	1.88
12808--12925	31	3.8	31	76	4	112	28	28	23	18	1.98
12985--13074	31	2.9	30	78	3	90	27	30	24	17	1.97
13282--13371	31	2.9	31	96	0	162	25	31	25	17	1.97
12836--13512	148	4.6	149	90	0	919	28	24	23	22	1.99
13430--13555	31	4.1	31	83	0	153	27	30	25	15	1.96
13282--13637	179	2.0	180	87	1	509	28	25	23	22	1.99
13533--13695	87	1.9	87	82	0	209	29	19	23	28	1.98
14207--14263	20	2.8	21	89	10	91	33	17	14	35	1.90
14188--14262	21	3.7	20	82	12	89	32	18	14	34	1.91
20725--20762	20	1.9	20	94	0	67	26	10	15	47	1.78
20696--20810	51	2.3	51	84	1	151	27	12	11	48	1.74
30895--31018	52	2.4	51	94	1	212	28	17	18	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30895--31038	52	2.8	51	88	5	202	29	17	18	34	1.94
31027--31051	13	1.9	13	100	0	50	36	16	16	32	1.90
31793--32132	49	7.1	49	83	9	407	33	16	25	24	1.96
32072--32200	66	2.0	66	100	0	258	29	20	24	25	1.99
32138--32292	43	3.5	43	86	10	229	29	20	25	24	1.99
32181--32407	115	2.0	113	86	10	318	29	19	25	24	1.98
31964--32456	158	3.0	158	90	5	707	32	17	25	24	1.97
32230--32358	66	2.0	66	95	0	231	29	20	24	24	1.99
32292--32516	49	4.7	49	89	3	309	32	16	24	26	1.97
32516--32585	33	2.1	35	94	5	126	20	17	37	25	1.94
32570--32965	70	5.7	70	84	12	464	31	11	35	21	1.89
32570--32965	37	11.4	36	85	10	485	31	11	35	21	1.89
32570--32992	107	4.1	106	87	9	562	31	11	35	21	1.90
32835--32992	62	2.5	64	85	9	218	29	13	33	24	1.93
34431--34563	1	133.0	1	77	0	86	2	4	8	84	0.82
34431--34563	11	11.7	11	75	16	105	2	4	8	84	0.82
34431--34563	15	8.9	15	78	15	100	2	4	8	84	0.82
34432--34563	23	5.9	22	77	13	126	2	4	8	84	0.83
34431--34563	28	4.9	26	75	9	99	2	4	8	84	0.82

Tables:   1

The End!