Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2080
Parameters: 2 7 7 80 10 50 1000
Length:  40918

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1142--1183
14
2.8
15
82
10
50
59
4
2
33
1.31
4082--4157
30
2.6
29
82
14
93
39
0
1
59
1.06
4084--4157
28
2.5
28
81
12
78
39
0
1
59
1.06
5520--5550
16
1.9
16
93
0
53
61
0
0
38
0.96
7049--7093
19
2.4
18
75
7
54
33
4
6
55
1.46
7956--7989
3
10.7
3
87
12
50
29
2
0
67
1.05
9186--9222
19
2.0
18
89
5
56
54
0
0
45
1.00
11893--11934
15
2.8
15
82
10
59
71
0
0
28
0.86
14999--15027
2
14.5
2
100
0
58
48
0
0
51
1.00
15937--15969
2
16.5
2
100
0
66
0
48
0
51
1.00
16165--16194
14
2.1
14
93
6
51
56
6
3
33
1.42
16314--16351
20
1.9
20
88
0
58
44
2
13
39
1.57
16466--16503
15
2.5
15
86
0
58
71
0
2
26
1.00
16478--16547
20
3.5
20
76
9
79
68
0
2
28
1.04
20653--20695
20
2.2
20
83
8
52
44
0
2
53
1.13
20749--20795
24
1.9
24
87
12
69
31
0
0
68
0.90
23079--23135
23
2.4
24
94
2
98
33
0
0
66
0.92
23485--23516
2
16.0
2
100
0
64
50
0
0
50
1.00
23709--23736
2
14.0
2
100
0
56
50
0
0
50
1.00
24510--24537
2
14.0
2
100
0
56
50
0
0
50
1.00
26224--26276
23
2.2
24
90
6
81
62
0
3
33
1.13
26241--26308
19
3.6
19
70
20
52
61
2
2
32
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27370--27425
28
2.0
28
96
0
103
44
10
14
30
1.79
34025--34067
18
2.2
20
88
8
63
37
0
0
62
0.95
35902--35944
2
21.5
2
100
0
86
48
0
0
51
1.00
36194--36228
16
2.2
16
100
0
70
60
5
11
22
1.52
39131--39158
14
2.0
14
100
0
56
14
14
14
57
1.66
40009--40038
15
1.9
16
93
6
53
30
0
0
70
0.88
40410--40453
17
2.6
17
82
7
54
54
0
0
45
0.99
40550--40595
23
2.0
24
87
12
69
54
0
0
45
0.99
40694--40762
17
3.9
17
71
22
54
24
1
2
71
1.09

Tables:   1

The End!