Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2081
Parameters: 2 7 7 80 10 50 1000
Length:  60807

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1481--1981
249
2.0
247
92
3
828
32
14
28
23
1.94
3373--3437
30
2.2
30
83
5
78
43
3
46
7
1.48
13691--13977
148
1.9
149
80
9
336
31
17
11
39
1.85
13841--14211
160
2.3
157
83
5
437
34
15
12
37
1.85
13632--15440
159
11.5
158
71
10
723
32
17
12
37
1.87
15806--16091
157
1.8
157
80
0
349
32
17
13
36
1.89
21294--21332
15
2.6
14
80
11
51
82
2
12
2
0.89
22078--22153
12
6.9
11
75
15
52
39
2
48
9
1.49
22068--22186
42
2.8
42
93
0
202
42
1
46
9
1.46
22143--22192
18
2.8
18
81
6
57
44
2
46
8
1.44
29981--30033
27
1.9
28
84
3
72
58
3
22
15
1.53
31365--31490
66
1.9
64
84
6
164
23
19
21
35
1.96
35792--36012
103
2.2
101
81
10
247
29
15
26
27
1.96
39211--39260
20
2.5
20
83
0
55
36
16
12
36
1.85
39791--39869
38
2.1
37
80
2
86
22
20
22
34
1.97
40369--40474
13
8.2
13
72
15
85
33
14
16
34
1.89
40413--40474
12
4.9
12
81
15
72
33
14
14
37
1.87
40423--40522
14
7.5
14
73
14
63
31
15
14
40
1.86
40779--40842
27
2.3
27
81
7
76
23
15
23
37
1.93
40834--40894
28
2.2
28
87
0
86
19
16
34
29
1.94
41732--41792
11
5.8
10
73
22
54
11
6
4
77
1.12
41755--41808
10
6.1
9
75
16
51
11
5
5
77
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41739--41792
19
2.6
19
83
13
63
12
5
5
75
1.15
41768--41806
15
2.5
15
91
8
60
7
5
2
84
0.84
41720--41798
9
8.1
9
71
19
52
10
7
3
78
1.07
46328--46381
20
2.8
19
82
2
63
31
18
14
35
1.91
51778--51896
42
2.8
42
92
0
193
8
46
2
42
1.47
51811--51886
12
6.9
11
75
15
52
9
48
2
39
1.49
51802--51887
24
3.8
24
72
17
85
10
45
2
41
1.51
51793--51863
18
3.6
18
69
20
52
9
43
2
43
1.52
58812--58860
19
2.5
19
83
3
62
32
16
14
36
1.89
58893--58946
20
2.7
20
91
0
81
33
14
16
35
1.90
60774--60803
12
2.5
12
88
0
51
6
10
0
83
0.81

Tables:   1

The End!