genome.fa.s2083.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2083
Parameters: 2 7 7 80 10 50 1000
Length:  66767

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2755--2779	12	2.1	12	100	0	50	36	16	16	32	1.90
2735--2797	30	2.0	32	93	6	112	39	14	12	33	1.84
2831--2931	21	4.8	20	80	12	105	28	16	16	37	1.91
3549--4279	56	13.3	54	77	14	623	19	20	30	29	1.97
3549--4259	113	6.4	110	80	13	759	19	20	30	29	1.97
3549--4259	166	4.3	161	76	15	620	19	20	30	29	1.97
3551--4259	220	3.2	221	80	13	645	19	20	30	29	1.97
3550--4286	333	2.2	331	81	12	812	19	20	30	29	1.97
5327--5380	11	5.0	10	78	13	54	0	9	9	81	0.88
17732--17939	78	2.7	78	82	3	231	29	16	28	25	1.97
17983--18123	52	2.7	53	82	8	173	33	13	25	27	1.93
18184--18314	51	2.5	51	84	9	174	32	10	25	31	1.90
18049--18302	133	1.9	131	83	4	323	31	13	25	29	1.94
20737--20804	19	3.9	18	76	23	83	38	14	11	35	1.83
20759--20783	13	1.9	13	100	0	50	32	16	16	36	1.90
20740--20802	32	2.0	32	96	0	117	36	15	12	34	1.86
21165--21222	29	2.0	29	100	0	116	31	17	27	24	1.97
24845--24877	11	3.0	11	90	0	57	87	12	0	0	0.53
24845--24878	12	3.0	12	87	12	54	85	14	0	0	0.60
25891--26196	27	11.1	27	89	3	441	23	33	13	29	1.93
25891--26196	55	5.6	55	88	3	447	23	33	13	29	1.93
25891--26196	82	3.7	82	91	2	461	23	33	13	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25891--26494	28	21.5	28	84	5	397	25	33	16	24	1.96
27092--27166	20	3.8	20	74	0	78	34	14	12	38	1.83
28080--28133	22	2.5	22	93	3	92	20	11	9	59	1.59
32014--32060	19	2.5	19	82	6	60	48	0	0	51	1.00
32006--32065	21	2.8	21	72	20	52	43	1	0	55	1.10
33358--33394	20	1.9	20	94	5	67	51	0	0	48	1.00
34080--34145	27	2.5	25	81	15	80	39	1	0	59	1.07
34202--34251	25	2.0	24	85	14	66	46	0	2	52	1.12
34274--34324	17	3.0	17	74	25	54	50	1	0	47	1.12
34316--34358	19	2.3	18	84	8	50	53	0	0	46	1.00
35625--35670	16	2.9	15	83	6	56	23	8	10	56	1.61
35889--35932	20	2.1	20	83	8	52	59	2	2	36	1.23
35979--36039	31	2.0	32	84	9	83	60	4	0	34	1.18
36363--36468	30	3.6	30	75	16	114	54	0	0	45	0.99
36391--36444	24	2.2	24	80	6	65	57	0	0	42	0.98
36352--36467	58	2.0	59	93	1	198	54	0	0	45	0.99
36600--36635	19	1.9	18	94	5	63	30	0	0	69	0.89
41640--41710	36	2.0	36	88	5	108	49	0	0	50	1.00
42242--42284	13	3.4	13	80	6	52	39	0	0	60	0.97
45842--45876	2	17.5	2	93	0	52	42	0	5	51	1.25
50145--50179	11	3.2	11	87	0	52	31	11	20	37	1.88
53976--54021	22	2.0	23	83	8	58	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54279--54317	19	2.2	18	86	9	53	58	0	2	38	1.12
54278--54320	18	2.5	17	82	14	52	55	0	2	41	1.12
54285--54333	19	2.6	19	74	9	55	48	0	2	48	1.12
55958--55992	2	17.5	2	87	0	52	51	2	42	2	1.31
56375--56419	23	1.9	24	86	4	65	80	2	13	4	0.97
56710--56772	28	2.2	28	76	15	67	25	6	4	63	1.38
57413--57442	15	2.0	15	100	0	60	40	53	6	0	1.27
58625--58659	7	5.0	7	92	0	61	54	14	2	28	1.54
58612--58656	14	3.3	14	84	3	56	51	11	4	33	1.58
59926--59993	19	3.9	19	78	21	85	35	11	14	38	1.83
59947--59971	13	1.9	13	100	0	50	36	16	16	32	1.90
59928--59990	32	2.0	32	96	0	117	34	12	15	36	1.86
60015--60079	33	2.0	33	87	0	94	27	15	13	43	1.85
65296--65367	28	2.5	29	78	13	69	29	15	33	22	1.94

Tables:   1

The End!