Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2084
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 139054
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Found at i:4134 original size:20 final size:20
Alignment explanation
Indices: 4105--4142 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
4095 AAAAAAAGAC
4105 AGAATATATCGATACATTGA
1 AGAATATATCGATACATTGA
*
4125 AGAATGTATCGATACATT
1 AGAATATATCGATACATT
4143 TATACATGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.32
Consensus pattern (20 bp):
AGAATATATCGATACATTGA
Found at i:4225 original size:18 final size:19
Alignment explanation
Indices: 4181--4233 Score: 74
Period size: 18 Copynumber: 2.8 Consensus size: 19
4171 AAAAAGACAG
4181 AATGTATCGATACA-TTCA
1 AATGTATCGATACATTTCA
4199 TACATGTATCGATACATTTC-
1 -A-ATGTATCGATACATTTCA
4219 AATGTATCGATACAT
1 AATGTATCGATACAT
4234 CTGGGTAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
18 14 0.44
19 2 0.06
20 13 0.41
21 3 0.09
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (19 bp):
AATGTATCGATACATTTCA
Found at i:5029 original size:48 final size:48
Alignment explanation
Indices: 4977--5176 Score: 237
Period size: 48 Copynumber: 4.2 Consensus size: 48
4967 CAATGTCCCA
* *
4977 ATTCAAGGCCAATGAAATTGAGCTAAGGGAAAAGTGGACAATGTGCTG
1 ATTCAAGGCCAACGAAATTGAGCTAAGGGAAAAGTGGACAATATGCTG
* * * * *
5025 ATTCAAGGCTAGCGACATTGAGCTAAGGGAAAAGTAGACAATGTGCTG
1 ATTCAAGGCCAACGAAATTGAGCTAAGGGAAAAGTGGACAATATGCTG
* * * *
5073 ATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGACAACATGCTA
1 ATTCAAGGCCAACGAAATTGAGCTAAGGGAAAAGTGGACAATATGCTG
* *
5121 ATTCAAGGCCAAC-AACATTGAGCTAA--TAAAAGT-GCCAATATGCTG
1 ATTCAAGGCCAACGAA-ATTGAGCTAAGGGAAAAGTGGACAATATGCTG
*
5166 ATTCAATGCCA
1 ATTCAAGGCCA
5177 GCGATATCAG
Statistics
Matches: 134, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
45 19 0.14
46 6 0.04
47 1 0.01
48 108 0.81
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.20
Consensus pattern (48 bp):
ATTCAAGGCCAACGAAATTGAGCTAAGGGAAAAGTGGACAATATGCTG
Found at i:5098 original size:96 final size:93
Alignment explanation
Indices: 4977--5180 Score: 264
Period size: 96 Copynumber: 2.2 Consensus size: 93
4967 CAATGTCCCA
** ** * * * *
4977 ATTCAAGGCCAATGAAATTGAGCTAAGGGAAAAGTGGACAATGTGCTGATTCAAGGCTAGCGACA
1 ATTCAAGGCCAGCGAAATTGAGCTAAGGGAAAAGTGGACAACATGCTAATTCAAGGCCAACAACA
*
5042 TTGAGCTAAGGGAAAAGTAGACAATGTGCTG
66 TTGAGCTAA--GAAAAGT-GACAATATGCTG
*
5073 ATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGACAACATGCTAATTCAAGGCCAACAACA
1 ATTCAAGGCCAGCGAAATTGAGCTAAGGGAAAAGTGGACAACATGCTAATTCAAGGCCAACAACA
* *
5138 TTGAGCTAATAAAAGTGCCAATATGCTG
66 TTGAGCTAAGAAAAGTGACAATATGCTG
*
5166 ATTCAATGCCAGCGA
1 ATTCAAGGCCAGCGA
5181 TATCAGACTT
Statistics
Matches: 95, Mismatches: 13, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
93 24 0.25
94 6 0.06
96 65 0.68
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.20
Consensus pattern (93 bp):
ATTCAAGGCCAGCGAAATTGAGCTAAGGGAAAAGTGGACAACATGCTAATTCAAGGCCAACAACA
TTGAGCTAAGAAAAGTGACAATATGCTG
Found at i:5364 original size:28 final size:28
Alignment explanation
Indices: 5294--5800 Score: 455
Period size: 28 Copynumber: 17.5 Consensus size: 28
5284 CACCGATTTG
*
5294 TGTGGGCTTTGAAAGGGGATGCTACTGACT
1 TGTGGGCTTTGAAA-GGG-TGCCACTGACT
* * *
5324 TGTGGGCTTTGAAGGGGTACCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
5352 TGTGGGCTGTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
5380 AGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * * *
5408 TATAGGTTTTGGAAGGATGCCACTGATTT
1 TGTGGGCTTTGAAAGGGTGCCACTGA-CT
* *
5437 GTGTGGGCTATGAAAGGATATGCCACTGACT
1 -TGTGGGCTTTGAAAGG--GTGCCACTGACT
* *
5468 TGTGGGCCTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
5496 TATGGGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
5524 TCTGGGCTTTTG-AAGAGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GGTGCCACTGACT
* * *
5553 TCTGGGCTTTGGAAGGGTGCCATTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
5581 TGTGGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GGTGCCACTGACT
* **
5610 TGTGGGCTTTGAAAAGAGTTGCCACCAACTT
1 TGTGGGCTTTG-AAAG-GGTGCCACTGAC-T
*
5641 GTGTGGGCTTTGAAAGGGTGTCACTGACT
1 -TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
5670 TGTGGTCTTTTGAAAAGATGCCACTGACT
1 TGTGGGC-TTTGAAAGGGTGCCACTGACT
*
5699 TGTGGGCTTTGAAAAGAGTTGCCACTGACT
1 TGTGGGCTTTG-AAAG-GGTGCCACTGACT
*
5729 TGTGTGGCTTTGAAAGGGTGCCA-TCAACT
1 TGTG-GGCTTTGAAAGGGTGCCACT-GACT
* *
5758 TGTGGGCTTTTG-AAGAGATGCCATTGACT
1 TGTGGGC-TTTGAAAG-GGTGCCACTGACT
* *
5787 TATAGGCTTTGAAA
1 TGTGGGCTTTGAAA
5801 AGAGTTACCA
Statistics
Matches: 394, Mismatches: 61, Indels: 45
0.79 0.12 0.09
Matches are distributed among these distances:
28 170 0.43
29 111 0.28
30 79 0.20
31 13 0.03
32 21 0.05
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.30
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGGTGCCACTGACT
Found at i:5502 original size:144 final size:145
Alignment explanation
Indices: 5282--5800 Score: 536
Period size: 144 Copynumber: 3.6 Consensus size: 145
5272 TGGCTTTGAA
* * * ** *
5282 GCCACCGATTTGTGTGGGCTTTGAAAGGGGATGCTACTGACTTGTGGGCTTTGAAGGGGTACCAC
1 GCCACTGATTTGTGTGGGCTTTGAAAGGAGATGCCACTGACTTGTGGGCTTTGAAAAGGTGCCAC
* * *
5347 TAACTTGTGGGCTGTGAAAGGGTGCCACTGACTAGTGGGC-TTTGAAAGGGTGCCACTGACTTAT
66 TAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTTGAAAGGATGCCACTGACTTAT
* *
5411 AGGTTTTGGAAGGAT
131 GGGCTTTGGAAGGAT
* * *
5426 GCCACTGATTTGTGTGGGCTATGAAAGGATATGCCACTGACTTGTGGGCCTTGAAAAGGTGCCAC
1 GCCACTGATTTGTGTGGGCTTTGAAAGGAGATGCCACTGACTTGTGGGCTTTGAAAAGGTGCCAC
* * * * * *
5491 TGACTTATGGGCTTTAAAAGGGTGCCACTGACTTCTGGGCTTTTG-AAGAGATGCCACTAACTTC
66 TAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTTGAAAG-GATGCCACTGACTTA
*
5555 TGGGCTTTGGAAGGGT
130 TGGGCTTTGGAAGGAT
* *
5571 GCCATTGA-CT-TGTGGGCTTTTG-AA-GAGATGCCACTGACTTGTGGGCTTTGAAAAGAGTTGC
1 GCCACTGATTTGTGTGGGC-TTTGAAAGGAGATGCCACTGACTTGTGGGCTTTGAAAAG-G-TGC
* * * *
5632 CACCAACTTGTGTGGGCTTTGAAAGGGTGTCACTGACTTGTGGTCTTTTGAAAAGATGCCACTGA
63 CACTAAC-T-TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTTGAAAGGATGCCACTGA
* * *
5697 CTTGTGGGCTTTGAAAAGAGTT
126 CTTATGGGCTTTG-GAAG-GAT
* * * *
5719 GCCACTGACTTGTGT-GGCTTTGAAAGG-G-TGCCA-TCAACTTGTGGGCTTTTGAAGAGATGCC
1 GCCACTGATTTGTGTGGGCTTTGAAAGGAGATGCCACT-GACTTGTGGGC-TTTGAAAAGGTGCC
* * * *
5780 ATTGACTTATAGGCTTTGAAA
64 ACTAACTTGTGGGCTTTGAAA
5801 AGAGTTACCA
Statistics
Matches: 311, Mismatches: 48, Indels: 31
0.80 0.12 0.08
Matches are distributed among these distances:
142 29 0.09
143 10 0.03
144 105 0.34
145 49 0.16
146 58 0.19
147 13 0.04
148 28 0.09
149 15 0.05
150 4 0.01
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.30
Consensus pattern (145 bp):
GCCACTGATTTGTGTGGGCTTTGAAAGGAGATGCCACTGACTTGTGGGCTTTGAAAAGGTGCCAC
TAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTTGAAAGGATGCCACTGACTTAT
GGGCTTTGGAAGGAT
Found at i:5795 original size:88 final size:87
Alignment explanation
Indices: 5294--5831 Score: 565
Period size: 88 Copynumber: 6.1 Consensus size: 87
5284 CACCGATTTG
* * * * *
5294 TGTGGGCTTTGAAAGGGGATGCTACTGACTTGTGGGC-TTTGAAGGGGTACCACTAACTTGTGGG
1 TGTGGGCTTTGAAA-GGG-TGCCACTGACTTGTGGGCTTTTGAAGAGATGCCACTGACTTGTGGG
* *
5358 CTGTG-AAAG-GGTGCCACTGACT
64 CTTTGAAAAGAGTTGCCACTGACT
* * * *
5380 AGTGGGCTTTGAAAGGGTGCCACTGACTTATAGG-TTTTGGAAG-GATGCCACTGATTTGTGTGG
1 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTT-GAAGAGATGCCACTGA-CT-TGTGG
* *
5443 GCTATGAAAGGA-TATGCCACTGACT
63 GCTTTGAAAAGAGT-TGCCACTGACT
* * * ** * *
5468 TGTGGGCCTTGAAAAGGTGCCACTGACTTATGGGCTTTAAAAG-GGTGCCACTGACTTCTGGGCT
1 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTTGAAGAGATGCCACTGACTTGTGGGC-
* *
5532 TTTG--AAGAGATGCCACTAACT
65 TTTGAAAAGAGTTGCCACTGACT
* * *
5553 TCTGGGCTTTGGAAGGGTGCCATTGACTTGTGGGCTTTTGAAGAGATGCCACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTTGAAGAGATGCCACTGACTTGTGGGCT
**
5618 TTGAAAAGAGTTGCCACCAACTT
66 TTGAAAAGAGTTGCCACTGAC-T
* * *
5641 GTGTGGGCTTTGAAAGGGTGTCACTGACTTGTGGTCTTTTGAAAAGATGCCACTGACTTGTGGGC
1 -TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTTGAAGAGATGCCACTGACTTGTGGGC
5706 TTTGAAAAGAGTTGCCACTGACT
65 TTTGAAAAGAGTTGCCACTGACT
* * * *
5729 TGTGTGGCTTTGAAAGGGTGCCA-TCAACTTGTGGGCTTTTGAAGAGATGCCATTGACTTATAGG
1 TGTG-GGCTTTGAAAGGGTGCCACT-GACTTGTGGGCTTTTGAAGAGATGCCACTGACTTGTGGG
* *
5793 CTTTGAAAAGAGTTACCACCGACTT
64 CTTTGAAAAGAGTTGCCACTGAC-T
5818 GTGTGGGCTTTGAA
1 -TGTGGGCTTTGAA
5832 GAGATGAACG
Statistics
Matches: 380, Mismatches: 53, Indels: 35
0.81 0.11 0.07
Matches are distributed among these distances:
84 25 0.07
85 60 0.16
86 47 0.12
87 26 0.07
88 127 0.33
89 91 0.24
90 4 0.01
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.30
Consensus pattern (87 bp):
TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTTGAAGAGATGCCACTGACTTGTGGGCT
TTGAAAAGAGTTGCCACTGACT
Found at i:7086 original size:18 final size:18
Alignment explanation
Indices: 7063--7142 Score: 65
Period size: 19 Copynumber: 4.3 Consensus size: 18
7053 TTTTTATTTG
7063 TTTGTTTTTTGTTTTTTT
1 TTTGTTTTTTGTTTTTTT
*
7081 TTTGTTTTTGGGTTTTCTTGT
1 TTTGTTTTT-TGTTTT-TT-T
* *
7102 TTT-TTTCTTG-GTTTTT
1 TTTGTTTTTTGTTTTTTT
* *
7118 TTTGTTTTCTTGGTTTTTC
1 TTTGTTTT-TTGTTTTTTT
7137 TTTGTT
1 TTTGTT
7143 AACTTGAGTC
Statistics
Matches: 49, Mismatches: 7, Indels: 11
0.73 0.10 0.16
Matches are distributed among these distances:
16 4 0.08
17 5 0.10
18 14 0.29
19 16 0.33
20 6 0.12
21 4 0.08
ACGTcount: A:0.00, C:0.05, G:0.16, T:0.79
Consensus pattern (18 bp):
TTTGTTTTTTGTTTTTTT
Found at i:7088 original size:11 final size:11
Alignment explanation
Indices: 7053--7125 Score: 58
Period size: 11 Copynumber: 6.3 Consensus size: 11
7043 ATCTGGACCC
*
7053 TTTTTATTTGT
1 TTTTTTTTTGT
*
7064 TTGTTTTTTGT
1 TTTTTTTTTGT
7075 TTTTTTTTTGTT
1 TTTTTTTTTG-T
7087 TTTGGGTTTTCTTGT
1 TTT---TTTT-TTGT
*
7102 TTTTTTCTTG-
1 TTTTTTTTTGT
*
7112 GTTTTTTTTGT
1 TTTTTTTTTGT
7123 TTT
1 TTT
7126 CTTGGTTTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
10 8 0.16
11 23 0.47
12 7 0.14
15 8 0.16
16 3 0.06
ACGTcount: A:0.01, C:0.03, G:0.15, T:0.81
Consensus pattern (11 bp):
TTTTTTTTTGT
Found at i:7112 original size:21 final size:20
Alignment explanation
Indices: 7073--7139 Score: 70
Period size: 20 Copynumber: 3.5 Consensus size: 20
7063 TTTGTTTTTT
7073 GTTTT-TTTTTTGTTT-TTGG
1 GTTTTCTTTTTT-TTTCTTGG
7092 GTTTTCTTGTTTTTTTCTT-G
1 GTTTTCTT-TTTTTTTCTTGG
*
7112 GTTTT-TTTTGTTTTCTTGG
1 GTTTTCTTTTTTTTTCTTGG
*
7131 TTTTTCTTT
1 GTTTTCTTT
7140 GTTAACTTGA
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
18 9 0.22
19 12 0.29
20 14 0.34
21 6 0.15
ACGTcount: A:0.00, C:0.06, G:0.16, T:0.78
Consensus pattern (20 bp):
GTTTTCTTTTTTTTTCTTGG
Found at i:7117 original size:29 final size:27
Alignment explanation
Indices: 7066--7140 Score: 80
Period size: 29 Copynumber: 2.7 Consensus size: 27
7056 TTATTTGTTT
*
7066 GTTTT-TTGTTTTTTTTTTGTTTTTGG
1 GTTTTCTTGTTTTTTTTTGGTTTTTGG
**
7092 GTTTTCTTGTTTTTTTCTTGGTTTTTTTT
1 GTTTTCTTGTTTTTTT-TTGG-TTTTTGG
*
7121 GTTTTCTTGGTTTTTCTTTG
1 GTTTTCTT-GTTTTTTTTTG
7141 TTAACTTGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
26 5 0.12
27 10 0.24
28 3 0.07
29 16 0.39
30 7 0.17
ACGTcount: A:0.00, C:0.05, G:0.17, T:0.77
Consensus pattern (27 bp):
GTTTTCTTGTTTTTTTTTGGTTTTTGG
Found at i:7135 original size:10 final size:10
Alignment explanation
Indices: 7088--7138 Score: 52
Period size: 10 Copynumber: 5.2 Consensus size: 10
7078 TTTTTTGTTT
*
7088 TTGGGTTTTC
1 TTGGTTTTTC
*
7098 TTGTTTTTTTC
1 TTG-GTTTTTC
7109 TTGGTTTTT-
1 TTGGTTTTTC
*
7118 TTTG-TTTTC
1 TTGGTTTTTC
7127 TTGGTTTTTC
1 TTGGTTTTTC
7137 TT
1 TT
7139 TGTTAACTTG
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
8 4 0.12
9 6 0.18
10 15 0.45
11 8 0.24
ACGTcount: A:0.00, C:0.08, G:0.18, T:0.75
Consensus pattern (10 bp):
TTGGTTTTTC
Found at i:7148 original size:19 final size:18
Alignment explanation
Indices: 7108--7148 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
7098 TTGTTTTTTT
**
7108 CTTGGTTTTTTTTGTTTT
1 CTTGGTTTTTTTTGTTAA
7126 CTTGGTTTTTCTTTGTTAA
1 CTTGGTTTTT-TTTGTTAA
7145 CTTG
1 CTTG
7149 AGTCAGGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.05, C:0.10, G:0.17, T:0.68
Consensus pattern (18 bp):
CTTGGTTTTTTTTGTTAA
Found at i:17313 original size:43 final size:43
Alignment explanation
Indices: 17252--17352 Score: 202
Period size: 43 Copynumber: 2.3 Consensus size: 43
17242 AGATGACACC
17252 TAAGGGTAGTCGAGGGTAGTATCCGAATCGTTCCTCCATTCGG
1 TAAGGGTAGTCGAGGGTAGTATCCGAATCGTTCCTCCATTCGG
17295 TAAGGGTAGTCGAGGGTAGTATCCGAATCGTTCCTCCATTCGG
1 TAAGGGTAGTCGAGGGTAGTATCCGAATCGTTCCTCCATTCGG
17338 TAAGGGTAGTCGAGG
1 TAAGGGTAGTCGAGG
17353 CACCCCGATT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.27
Consensus pattern (43 bp):
TAAGGGTAGTCGAGGGTAGTATCCGAATCGTTCCTCCATTCGG
Found at i:21095 original size:20 final size:20
Alignment explanation
Indices: 21070--21145 Score: 89
Period size: 20 Copynumber: 3.8 Consensus size: 20
21060 AAAAAGACAC
21070 AATGTATCGATACATTGAAA
1 AATGTATCGATACATTGAAA
* *
21090 AATGTATCGATACATTCATA
1 AATGTATCGATACATTGAAA
* * * * *
21110 CATGTATTGATGCACTGCAA
1 AATGTATCGATACATTGAAA
21130 AATGTATCGATACATT
1 AATGTATCGATACATT
21146 TGGGTAAAAA
Statistics
Matches: 43, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.33
Consensus pattern (20 bp):
AATGTATCGATACATTGAAA
Found at i:21187 original size:51 final size:51
Alignment explanation
Indices: 21128--21227 Score: 173
Period size: 51 Copynumber: 2.0 Consensus size: 51
21118 GATGCACTGC
* *
21128 AAAATGTATCGATACATTTGGGTAAAAAGATAGAATGTATCGATACATTGA
1 AAAATGTATCGATACATATGGGTAAAAAGATAGAATGTATCAATACATTGA
*
21179 AAAATGTATCGATACGTATGGGTAAAAAGATAGAATGTATCAATACATT
1 AAAATGTATCGATACATATGGGTAAAAAGATAGAATGTATCAATACATT
21228 CATACATGTG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.44, C:0.08, G:0.19, T:0.29
Consensus pattern (51 bp):
AAAATGTATCGATACATATGGGTAAAAAGATAGAATGTATCAATACATTGA
Found at i:26739 original size:13 final size:13
Alignment explanation
Indices: 26721--26746 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26711 TACAGCAAGT
26721 ATGTATCGATACA
1 ATGTATCGATACA
26734 ATGTATCGATACA
1 ATGTATCGATACA
26747 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:28994 original size:21 final size:21
Alignment explanation
Indices: 28961--29005 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
28951 TTGCAAGTTG
*
28961 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
28983 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
29003 AAA
1 AAA
29006 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:30829 original size:15 final size:15
Alignment explanation
Indices: 30809--30839 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
30799 TAAAAATGTC
*
30809 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
30824 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
30839 C
1 C
30840 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:32937 original size:13 final size:13
Alignment explanation
Indices: 32919--32944 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32909 ACATTTTTCT
32919 TTGTATCGATACA
1 TTGTATCGATACA
32932 TTGTATCGATACA
1 TTGTATCGATACA
32945 GGGTGATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:33108 original size:20 final size:20
Alignment explanation
Indices: 33065--33110 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
33055 AAATCTTTTG
33065 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
33086 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
33106 CAAAA
1 CAAAA
33111 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:35507 original size:13 final size:13
Alignment explanation
Indices: 35489--35514 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
35479 TACAGCAAGT
35489 ATGTATCGATACA
1 ATGTATCGATACA
35502 ATGTATCGATACA
1 ATGTATCGATACA
35515 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:37853 original size:30 final size:30
Alignment explanation
Indices: 37815--38437 Score: 249
Period size: 30 Copynumber: 20.7 Consensus size: 30
37805 CCTCTTGATC
* * *
37815 GTATTCGGTCATGTTTATCCTTATTTGATT
1 GTATTCGGTCAAGTTTATCCCTATTTGACT
* * * *
37845 GTACTCGGTCAAATTTTACCCCT-CTTGACT
1 GTATTCGGTC-AAGTTTATCCCTATTTGACT
* * *
37875 GTATTCGATCAAGTTTAT-CCTCATTTAATT
1 GTATTCGGTCAAGTTTATCCCT-ATTTGACT
* * * * *
37905 GTACTCAGTCAAATCTTACCCCT-CTTGACT
1 GTATTCGGTCAAGT-TTATCCCTATTTGACT
37935 GTATTCGGTCAAGTTTATCCAC-ATTTGACT
1 GTATTCGGTCAAGTTTATCC-CTATTTGACT
* * * * * *
37965 ATACTCAGTCATA-TCTTACCCCT-CTTGATT
1 GTATTCGGTCA-AGT-TTATCCCTATTTGACT
37995 GTATTCGGTCAAGTTTAT-CCTCATTTGACT
1 GTATTCGGTCAAGTTTATCCCT-ATTTGACT
* * * * * *
38025 GTAATCGATCAAATCTTACCCCT-CTTAACT
1 GTATTCGGTCAAGT-TTATCCCTATTTGACT
* * *
38055 GTATTCGATCAAGTTTTTTCTTTCTTATTTGACT
1 GTATTCGGTCAAG-TTTATC---CCTATTTGACT
* * * * *
38089 ATA-TCAGTCAAATCTTACCCCT-CTTGACT
1 GTATTCGGTCAAGT-TTATCCCTATTTGACT
*
38118 GTATTTGGTCAAGTTTAT-CCTCATTTG-CTT
1 GTATTCGGTCAAGTTTATCCCT-ATTTGAC-T
* ** * * * *
38148 GTACTCAATCAAATCTTACCCCT-CTTGATT
1 GTATTCGGTCAAGT-TTATCCCTATTTGACT
* *
38178 GTATTCGGTCAAGTTTATCCTTATTTGATT
1 GTATTCGGTCAAGTTTATCCCTATTTGACT
* * * *
38208 GTATTCGGTCAAATCTCA-CCCTTTTTGATT
1 GTATTCGGTCAAGT-TTATCCCTATTTGACT
* *
38238 GTATTCAGTCAAGTTTA-CCCTTATTTGATT
1 GTATTCGGTCAAGTTTATCCC-TATTTGACT
* * * * * * *
38268 GTACTCGATCAAATCTCACCCCT-CTTGATT
1 GTATTCGGTCAAGT-TTATCCCTATTTGACT
* *
38298 GTATTCGGTCAAGTTTTTCCTTATTTGACT
1 GTATTCGGTCAAGTTTATCCCTATTTGACT
* * * * *
38328 GTACTCGATCAAATCTTACCCCT-CTTGACT
1 GTATTCGGTCAAGT-TTATCCCTATTTGACT
* * *
38358 GTATTTGGTCAAGTTTAT-CCTCATTTAATT
1 GTATTCGGTCAAGTTTATCCCT-ATTTGACT
* * ** *
38388 GTACTCGGTCAAATCTTGCCCCT-CTTGACT
1 GTATTCGGTCAAGT-TTATCCCTATTTGACT
*
38418 CTATTCGGTCAAGTTTATCC
1 GTATTCGGTCAAGTTTATCC
38438 TCATTTAATT
Statistics
Matches: 422, Mismatches: 132, Indels: 79
0.67 0.21 0.12
Matches are distributed among these distances:
28 12 0.03
29 49 0.12
30 291 0.69
31 36 0.09
32 16 0.04
33 11 0.03
34 7 0.02
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.42
Consensus pattern (30 bp):
GTATTCGGTCAAGTTTATCCCTATTTGACT
Found at i:37879 original size:60 final size:60
Alignment explanation
Indices: 37748--38802 Score: 1076
Period size: 60 Copynumber: 17.4 Consensus size: 60
37738 AACCATCCTT
* * *
37748 TCTTGATTGTATTCGGTCAAGTTTATCCTCATTTGACT-TACTCAATCAAACCTTACCCC
1 TCTTGACTGTATTCGGTCAAGTTTATCCTCATTTGACTGTACTCGATCAAATCTTACCCC
* * * * *
37807 TCTTGA-TCGTATTCGGTCATGTTTATCCTTATTTGATTGTACTCGGTCAAATTTTACCCC
1 TCTTGACT-GTATTCGGTCAAGTTTATCCTCATTTGACTGTACTCGATCAAATCTTACCCC
* * *
37867 TCTTGACTGTATTCGATCAAGTTTATCCTCATTTAATTGTACTC-AGTCAAATCTTACCCC
1 TCTTGACTGTATTCGGTCAAGTTTATCCTCATTTGACTGTACTCGA-TCAAATCTTACCCC
* * *
37927 TCTTGACTGTATTCGGTCAAGTTTATCCACATTTGACTATACTC-AGTCATATCTTACCCC
1 TCTTGACTGTATTCGGTCAAGTTTATCCTCATTTGACTGTACTCGA-TCAAATCTTACCCC
* *
37987 TCTTGATTGTATTCGGTCAAGTTTATCCTCATTTGACTGTAATCGATCAAATCTTACCCC
1 TCTTGACTGTATTCGGTCAAGTTTATCCTCATTTGACTGTACTCGATCAAATCTTACCCC
* * * * *
38047 TCTTAACTGTATTCGATCAAGTTTTTTCTTTCTTATTTGACTATA-TC-AGTCAAATCTTACCCC
1 TCTTGACTGTATTCGGTCAAG-TTTATC---CTCATTTGACTGTACTCGA-TCAAATCTTACCCC
* *
38110 TCTTGACTGTATTTGGTCAAGTTTATCCTCATTTG-CTTGTACTCAATCAAATCTTACCCC
1 TCTTGACTGTATTCGGTCAAGTTTATCCTCATTTGAC-TGTACTCGATCAAATCTTACCCC
* * * * * * *
38170 TCTTGATTGTATTCGGTCAAGTTTATCCTTATTTGATTGTATTCGGTCAAATCTCACCCT
1 TCTTGACTGTATTCGGTCAAGTTTATCCTCATTTGACTGTACTCGATCAAATCTTACCCC
* * * * * * *
38230 TTTTGATTGTATTCAGTCAAGTTTACCCTTATTTGATTGTACTCGATCAAATCTCACCCC
1 TCTTGACTGTATTCGGTCAAGTTTATCCTCATTTGACTGTACTCGATCAAATCTTACCCC
* * *
38290 TCTTGATTGTATTCGGTCAAGTTTTTCCTTATTTGACTGTACTCGATCAAATCTTACCCC
1 TCTTGACTGTATTCGGTCAAGTTTATCCTCATTTGACTGTACTCGATCAAATCTTACCCC
* * * * *
38350 TCTTGACTGTATTTGGTCAAGTTTATCCTCATTTAATTGTACTCGGTCAAATCTTGCCCC
1 TCTTGACTGTATTCGGTCAAGTTTATCCTCATTTGACTGTACTCGATCAAATCTTACCCC
* * * * *
38410 TCTTGACTCTATTCGGTCAAGTTTATCCTCATTTAATTGTTCTCGATCAAATCTTGCCCC
1 TCTTGACTGTATTCGGTCAAGTTTATCCTCATTTGACTGTACTCGATCAAATCTTACCCC
* * * * **
38470 TCTTGACTGTATTTGATCAAGTTTTTTTCTCTCTCATTTAACTGTACT-GAGTCAAATCTTACTG
1 TCTTGACTGTATTCGGTCAAG----TTTATC-CTCATTTGACTGTACTCGA-TCAAATCTTACCC
38534 C
60 C
* * * **
38535 TCTTGACTATATTCGATCAAGTTTTTTTTCTTTCTCATTTGACAATACTCGATCAAATCTTACCC
1 TCTTGACTGTATTCGGTCAAG---TTTATC---CTCATTTGACTGTACTCGATCAAATCTTACCC
38600 C
60 C
* * * *
38601 TCTTGACTGTATTCGGTCAAGTTTTTTTTCTCATTTGACTATACTCGATCAAATCTTA-TCC
1 TCTTGACTGTATTCGGTCAAG--TTTATCCTCATTTGACTGTACTCGATCAAATCTTACCCC
** * *
38662 TCTTGACTGTATTCGGTCAAGTCTT-TCCTCATTTGACTACACTCGGTCAAATCTTA-CCA
1 TCTTGACTGTATTCGGTCAAGT-TTATCCTCATTTGACTGTACTCGATCAAATCTTACCCC
* * * * *
38721 TGTTCAATTGTATTCGGTCAAGTCTT-TCTTCATTTGA-TGATACGT-GATCAAATCTTACCTC
1 TCTT-GACTGTATTCGGTCAAGT-TTATCCTCATTTGACTG-TAC-TCGATCAAATCTTACCCC
* *
38782 GCTTGATTGTATTCGGTCAAG
1 TCTTGACTGTATTCGGTCAAG
38803 CATTTCCTCA
Statistics
Matches: 860, Mismatches: 108, Indels: 55
0.84 0.11 0.05
Matches are distributed among these distances:
58 2 0.00
59 77 0.09
60 553 0.64
61 35 0.04
62 34 0.04
63 34 0.04
64 27 0.03
65 51 0.06
66 45 0.05
67 2 0.00
ACGTcount: A:0.22, C:0.23, G:0.12, T:0.42
Consensus pattern (60 bp):
TCTTGACTGTATTCGGTCAAGTTTATCCTCATTTGACTGTACTCGATCAAATCTTACCCC
Found at i:38708 original size:30 final size:31
Alignment explanation
Indices: 38568--38717 Score: 121
Period size: 30 Copynumber: 4.9 Consensus size: 31
38558 TTTTTTCTTT
* *
38568 CTCATTTGACAATACTCGATCAAATCTTA-C
1 CTCATTTGACTATACTCGGTCAAATCTTATC
* * * * * * *
38598 C-CCTCTTGACTGTATTCGGTCAAGTTTTTTTT
1 CTCAT-TTGACTATACTCGGTCAA-ATCTTATC
*
38630 CTCATTTGACTATACTCGATCAAATCTTATC
1 CTCATTTGACTATACTCGGTCAAATCTTATC
* * *
38661 CTC--TTGACTGTATTCGGTCAAGTCTT-TC
1 CTCATTTGACTATACTCGGTCAAATCTTATC
*
38689 CTCATTTGACTACACTCGGTCAAATCTTA
1 CTCATTTGACTATACTCGGTCAAATCTTA
38718 CCATGTTCAA
Statistics
Matches: 88, Mismatches: 25, Indels: 13
0.70 0.20 0.10
Matches are distributed among these distances:
28 5 0.06
29 21 0.24
30 34 0.39
31 10 0.11
32 16 0.18
33 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.11, T:0.40
Consensus pattern (31 bp):
CTCATTTGACTATACTCGGTCAAATCTTATC
Found at i:40303 original size:164 final size:165
Alignment explanation
Indices: 39855--40604 Score: 837
Period size: 166 Copynumber: 4.5 Consensus size: 165
39845 TTTTCTTTCT
* *
39855 AAATTCCTCCTATTTTC-AAATTATA-AGGTTTTCTTCTCCGTAAATTTTTTTCGGGAGGATTTT
1 AAATTCC-CCTTTTTTCGAAA-TATAGA-GTTTTCTACT-CGTAAA-TTTTTTCGGGAGGATTTT
* *
39918 TCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTTCACATTAATTCAGTTTTTA
61 TCTTGGTTTTTAATTTTTAAAATTCATAAAATATTATTATTTATTTCATATTAATTCAGTTTTTA
* *
39983 AAAATTCATTCATTTCCATAAATTTTGAATTTTTCCCTTA
126 AAAATTCATTCATTTCCATAAATTTTGAATTTTTTCCTTG
** * **
40023 AAATTCTCTTTTTTATTCGAAATATAGAGTTTTGTACTCCGT-AATTTTTTTTGGAGAGATTTTT
1 AAATTC-CCCTTTT-TTCGAAATATAGAGTTTTCTACT-CGTAAATTTTTTCGGGAG-GATTTTT
* *
40087 CTT--TTCTTT-ATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCA
62 CTTGGTT-TTTAATTTTTAAAATTCATAAAATATTATTATTTATTTCATATTAATTCAGTTTTTA
* *
40149 AAAATTCATTGATTTCCATAAATTTTAAATTTTTTCCTTG
126 AAAATTCATTCATTTCCATAAATTTTGAATTTTTTCCTTG
** * * *
40189 AAATTTTCCTTTTTTCGAAATATAGAGTTTTCTACACAATAAATATTTT-GGGAGGATTTTTCTT
1 AAATTCCCCTTTTTTCGAAATATAGAGTTTTCTACTC-GTAAATTTTTTCGGGAGGATTTTTCTT
*
40253 GGTTTTTAATTTTT-AAATTCATAAAATATTATTATTTATTTCAAATTAATTCAGTTTTTAAAAA
65 GGTTTTTAATTTTTAAAATTCATAAAATATTATTATTTATTTCATATTAATTCAGTTTTTAAAAA
40317 TTCATTCATTTCCATAAATTTTGAATTTTTT-CTTG
130 TTCATTCATTTCCATAAATTTTGAATTTTTTCCTTG
* * *
40352 AAGTTTCCCTTTTTTCCAAA-ATACGGAGTTTTCTACTTCGTAAATTTTTTCGAGG-GGATTTTT
1 AAATTCCCCTTTTTTCGAAATATA--GAGTTTTCTAC-TCGTAAATTTTTTCG-GGAGGATTTTT
* ** * * *
40415 CTTGGTTTTTGATTTTTAAAATTCATAAAATATTATTATTTATTTTTTATTAAATCAATTTTAAA
62 CTTGGTTTTTAATTTTTAAAATTCATAAAATATTATTATTTATTTCATATTAATTCAGTTTTTAA
* * * * *
40480 AAATTAATTCATTTTCATGAGTTTTGAA-TTTTTCTTTG
127 AAATTCATTCATTTCCATAAATTTTGAATTTTTTCCTTG
* *** * * *
40518 AAAATCCCCTTTTTTCGAGAAGCCA-AGTTTTTTTCTTCGTAAATTTTTT-GGGAGATATTTTTC
1 AAATTCCCCTTTTTTCGA-AATATAGAGTTTTCTAC-TCGTAAATTTTTTCGGGAG-GATTTTTC
* *
40581 TTGG-TTTAAAATTTTAAAATTCAT
63 TTGGTTTTTAATTTTTAAAATTCAT
40605 TTAATATTGT
Statistics
Matches: 503, Mismatches: 57, Indels: 48
0.83 0.09 0.08
Matches are distributed among these distances:
162 3 0.01
163 34 0.07
164 144 0.29
165 83 0.17
166 178 0.35
167 15 0.03
168 22 0.04
169 20 0.04
170 4 0.01
ACGTcount: A:0.29, C:0.11, G:0.09, T:0.51
Consensus pattern (165 bp):
AAATTCCCCTTTTTTCGAAATATAGAGTTTTCTACTCGTAAATTTTTTCGGGAGGATTTTTCTTG
GTTTTTAATTTTTAAAATTCATAAAATATTATTATTTATTTCATATTAATTCAGTTTTTAAAAAT
TCATTCATTTCCATAAATTTTGAATTTTTTCCTTG
Found at i:40580 original size:330 final size:330
Alignment explanation
Indices: 39882--40604 Score: 897
Period size: 330 Copynumber: 2.2 Consensus size: 330
39872 AAATTATAAG
* *
39882 GTTTTCTTCTCCGTAAATTTTTTTCGGGAGGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCA
1 GTTTTCTTCTACGTAAA-TTTTTT-GGGAGGATTTTTCTTGGTTTTTAATTTTT-AAATTCATAA
*
39947 AATATTATTATTTATTTCACATTAATTCAGTTTTTAAAAATTCATTCATTTCCATAAATTTTGAA
63 AATATTATTATTTATTTCAAATTAATTCAGTTTTTAAAAATTCATTCATTTCCATAAATTTTGAA
** * * * *
40012 TTTTTCCCTTAAAATTCTCTTTTTTATTCGAAATATAGAGTTTTGTACTCCGTAATTTTTTTTGG
128 TTTTTCCCTTAAAATTCTCCCTTTTATTCCAAATATAGAGTTTTCTACTCCGTAAATTTTTTCGG
* *
40077 AGAGATTTTTCTTTTCTTTATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCA
193 AGAGATTTTTCTTTTCTTTATTTTTAAAATTCATAAAATATTATTATTTATTTCATATTAAATCA
* * * * * **
40142 GTTTTCAAAAATTCATTGATTTCCATAAATTTTAAATTTTTTCCTTGAAATTTTCCTTTTTTCGA
258 ATTTTAAAAAATTAATTCATTTCCATAAATTTTAAATTTTTTCCTTGAAAATCCCCTTTTTTCGA
* *
40207 AATATAGA
323 AAGACAGA
* * *
40215 GTTTTCTAC-ACAATAAATATTTTGGGAGGATTTTTCTTGGTTTTTAATTTTTAAATTCATAAAA
1 GTTTTCTTCTAC-GTAAATTTTTTGGGAGGATTTTTCTTGGTTTTTAATTTTTAAATTCATAAAA
40279 TATTATTATTTATTTCAAATTAATTCAGTTTTTAAAAATTCATTCATTTCCATAAATTTTGAATT
65 TATTATTATTTATTTCAAATTAATTCAGTTTTTAAAAATTCATTCATTTCCATAAATTTTGAATT
* * * *
40344 TTT-TCTTGAAGTT-TCCCTTTT-TTCCAAA-ATACGGAGTTTTCTACTTCGTAAATTTTTTC-G
130 TTTCCCTTAAAATTCTCCCTTTTATTCCAAATATA--GAGTTTTCTACTCCGTAAATTTTTTCGG
* **
40404 AGGGGATTTTTCTTGGTT-TTTGATTTTTAAAATTCATAAAATATTATTATTTATTTTTTATTAA
193 A-GAGATTTTTCTT--TTCTTT-ATTTTTAAAATTCATAAAATATTATTATTTATTTCATATTAA
* * * * *
40468 ATCAATTTTAAAAAATTAATTCATTTTCATGAGTTTTGAA-TTTTTCTTTGAAAATCCCCTTTTT
254 ATCAATTTTAAAAAATTAATTCATTTCCATAAATTTTAAATTTTTTCCTTGAAAATCCCCTTTTT
*
40532 TCGAGAAGCCA-A
319 TCGA-AAGACAGA
* * * ** *
40544 GTTTTTTTCTTCGTAAATTTTTTGGGAGATATTTTTCTTGGTTTAAAATTTTAAAATTCAT
1 GTTTTCTTCTACGTAAATTTTTTGGGAG-GATTTTTCTTGGTTTTTAATTTTTAAATTCAT
40605 TTAATATTGT
Statistics
Matches: 335, Mismatches: 45, Indels: 23
0.83 0.11 0.06
Matches are distributed among these distances:
326 3 0.01
327 8 0.02
328 39 0.12
329 56 0.17
330 182 0.54
331 29 0.09
332 6 0.02
333 12 0.04
ACGTcount: A:0.29, C:0.11, G:0.09, T:0.51
Consensus pattern (330 bp):
GTTTTCTTCTACGTAAATTTTTTGGGAGGATTTTTCTTGGTTTTTAATTTTTAAATTCATAAAAT
ATTATTATTTATTTCAAATTAATTCAGTTTTTAAAAATTCATTCATTTCCATAAATTTTGAATTT
TTCCCTTAAAATTCTCCCTTTTATTCCAAATATAGAGTTTTCTACTCCGTAAATTTTTTCGGAGA
GATTTTTCTTTTCTTTATTTTTAAAATTCATAAAATATTATTATTTATTTCATATTAAATCAATT
TTAAAAAATTAATTCATTTCCATAAATTTTAAATTTTTTCCTTGAAAATCCCCTTTTTTCGAAAG
ACAGA
Found at i:42309 original size:162 final size:162
Alignment explanation
Indices: 41794--42411 Score: 845
Period size: 161 Copynumber: 3.8 Consensus size: 162
41784 TATTTCCATG
* * * * *
41794 TTTATTTTTTTTTAATTTTTTATATTCCTATGGGCATCCGTTGGGGTATAAAAGATTTAAAAAAT
1 TTTA-TTTTTTCTAATCTTTTATATTCCTATGGGCATCCGTAGGGGTATAAAAGATTTCAAAAAC
* * * * *
41859 GTTTCGTATCCTTTTGGGCTTCCATTAGGGTACGAAATGTTATTTTCAAAAGTAAATAAAATCAA
65 CTTTCGTATCCTTTCGGGCTTCCATTAGGGTACGAAATGGTATTTTCAAAAATAAATAAAATTAA
* ** *
41924 AGTGAATTAATATT-TTCAGGATAAATTTTAATA
130 ATTGAATTGGTATTCTT-AGGATAAATTCTAATA
* * *
41957 TTTA-TTTTTCTAATCTTTTATATTCCTATGGGCATCCATAGAGGTATAAAGGATTTCAAAAACC
1 TTTATTTTTTCTAATCTTTTATATTCCTATGGGCATCCGTAGGGGTATAAAAGATTTCAAAAACC
* * * * * ** *
42021 TTTCGTATTCTTTCGAGCTTCTATTAGGGTTCAAAATGGTATTTTTGAAAGT---T-AAATTAAA
66 TTTCGTATCCTTTCGGGCTTCCATTAGGGTACGAAATGGTATTTTCAAAAATAAATAAAATTAAA
42082 TTGAATTGGTATTCTTAGGATAAATTCTAATA
131 TTGAATTGGTATTCTTAGGATAAATTCTAATA
* *
42114 TTTATTTTTTCTAATCTTTTATATTCCTATGGGCATCCGTAGGGGTATACAAGATTTCAAAATCC
1 TTTATTTTTTCTAATCTTTTATATTCCTATGGGCATCCGTAGGGGTATAAAAGATTTCAAAAACC
* * *
42179 TTTTGTATTCTTTCGGGCTTCCATTAGGGTACGAAATGGTATTTTCAAAAATAAATTAAATTAAA
66 TTTCGTATCCTTTCGGGCTTCCATTAGGGTACGAAATGGTATTTTCAAAAATAAATAAAATTAAA
* *
42244 TTGAATTGGTATTCTTGGGATAAATTCTAAGA
131 TTGAATTGGTATTCTTAGGATAAATTCTAATA
*
42276 TTTATTTTTTCTAATCTTTTCTATTCCTATGGGCATCCGTA-GGGTATAAAAGATTTCAAAAACC
1 TTTATTTTTTCTAATCTTTTATATTCCTATGGGCATCCGTAGGGGTATAAAAGATTTCAAAAACC
* * *
42340 TTTCATATCCTTTCGGGCTTCCACTAGGGTATGAAATGGTATTTTCAAAAATAAATAAAATTAAA
66 TTTCGTATCCTTTCGGGCTTCCATTAGGGTACGAAATGGTATTTTCAAAAATAAATAAAATTAAA
42405 TTGAATT
131 TTGAATT
42412 AATACTTTTG
Statistics
Matches: 402, Mismatches: 47, Indels: 14
0.87 0.10 0.03
Matches are distributed among these distances:
157 36 0.09
158 102 0.25
161 182 0.45
162 78 0.19
163 4 0.01
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.42
Consensus pattern (162 bp):
TTTATTTTTTCTAATCTTTTATATTCCTATGGGCATCCGTAGGGGTATAAAAGATTTCAAAAACC
TTTCGTATCCTTTCGGGCTTCCATTAGGGTACGAAATGGTATTTTCAAAAATAAATAAAATTAAA
TTGAATTGGTATTCTTAGGATAAATTCTAATA
Found at i:42379 original size:319 final size:320
Alignment explanation
Indices: 41794--42384 Score: 859
Period size: 319 Copynumber: 1.9 Consensus size: 320
41784 TATTTCCATG
* * *
41794 TTTATTTTTTTTTAATTTTTTATATTCCTATGGGCATCCGTTGGGGTATAAAAGATTTAAAAAAT
1 TTTATTTTTTTCTAATCTTTTATATTCCTATGGGCATCCGTAGGGGTATAAAAGATTTAAAAAAT
* * * *
41859 GTTTCGTATCCTTTTGGGCTTCCATTAGGGTACGAAATGTTATTTTCAAAAGTAAATAAAATCAA
66 CTTTCGTATCCTTTCGGGCTTCCATTAGGGTACGAAATGGTATTTTCAAAAATAAATAAAATCAA
* *
41924 AGTGAATTAATATTTTCAGGATAAATTTTAATATTTATTTTTCTAATCTTTTATATTCCTATGGG
131 AGTGAATTAATATTTTCAGGATAAATTCTAAGATTTATTTTTCTAATCTTTTATATTCCTATGGG
* * * * *
41989 CATCCATAGAGGTATAAAGGATTTCAAAAACCTTTCGTATTCTTTCGAGCTTCTATTAGGGTTCA
196 CATCCATAGAGGTATAAAAGATTTCAAAAACCTTTCATATCCTTTCGAGCTTCCACTAGGGTTCA
42054 AAATGGTATTTTTGAAAGTTAAATTAAATTGAATTGGTATTCTTAGGATAAATTCTAATA
261 AAATGGTATTTTTGAAAGTTAAATTAAATTGAATTGGTATTCTTAGGATAAATTCTAATA
* *
42114 TTTA-TTTTTTCTAATCTTTTATATTCCTATGGGCATCCGTAGGGGTATACAAGATTT-CAAAAT
1 TTTATTTTTTTCTAATCTTTTATATTCCTATGGGCATCCGTAGGGGTATAAAAGATTTAAAAAAT
* * * *
42177 CCTTTTGTATTCTTTCGGGCTTCCATTAGGGTACGAAATGGTATTTTCAAAAATAAATTAAATTA
66 -CTTTCGTATCCTTTCGGGCTTCCATTAGGGTACGAAATGGTATTTTCAAAAATAAATAAAATCA
* ** * *
42242 AATTGAATTGGTATTCTT-GGGATAAATTCTAAGATTTATTTTTTCTAATCTTTTCTATTCCTAT
130 AAGTGAATTAATATT-TTCAGGATAAATTCTAAGATTTA-TTTTTCTAATCTTTTATATTCCTAT
* *
42306 GGGCATCCGTAG-GGTATAAAAGATTTCAAAAACCTTTCATATCCTTTCGGGCTTCCACTAGGGT
193 GGGCATCCATAGAGGTATAAAAGATTTCAAAAACCTTTCATATCCTTTCGAGCTTCCACTAGGGT
*
42370 AT-GAAATGGTATTTT
258 -TCAAAATGGTATTTT
42385 CAAAAATAAA
Statistics
Matches: 239, Mismatches: 28, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
318 5 0.02
319 192 0.80
320 42 0.18
ACGTcount: A:0.30, C:0.12, G:0.15, T:0.42
Consensus pattern (320 bp):
TTTATTTTTTTCTAATCTTTTATATTCCTATGGGCATCCGTAGGGGTATAAAAGATTTAAAAAAT
CTTTCGTATCCTTTCGGGCTTCCATTAGGGTACGAAATGGTATTTTCAAAAATAAATAAAATCAA
AGTGAATTAATATTTTCAGGATAAATTCTAAGATTTATTTTTCTAATCTTTTATATTCCTATGGG
CATCCATAGAGGTATAAAAGATTTCAAAAACCTTTCATATCCTTTCGAGCTTCCACTAGGGTTCA
AAATGGTATTTTTGAAAGTTAAATTAAATTGAATTGGTATTCTTAGGATAAATTCTAATA
Found at i:51429 original size:20 final size:18
Alignment explanation
Indices: 51388--51439 Score: 70
Period size: 20 Copynumber: 2.8 Consensus size: 18
51378 TTTTACCCAG
51388 ATGTATCGATACA-TTCA
1 ATGTATCGATACATTTCA
*
51405 ATGTATCGATACATGTATGA
1 ATGTATCGATACAT-T-TCA
51425 ATGTATCGATACATT
1 ATGTATCGATACATT
51440 CTGTTTTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
17 13 0.42
19 2 0.06
20 16 0.52
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (18 bp):
ATGTATCGATACATTTCA
Found at i:51478 original size:28 final size:28
Alignment explanation
Indices: 51424--51478 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
51414 TACATGTATG
**
51424 AATGTATCGATACATTCTGTTTTTTTTC
1 AATGTATCGATACATTCTGTTAATTTTC
*
51452 AATGTATCGATGCA-TCTAGTTAATTTT
1 AATGTATCGATACATTCT-GTTAATTTT
51479 GAGTATTTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 3 0.13
28 20 0.87
ACGTcount: A:0.25, C:0.13, G:0.13, T:0.49
Consensus pattern (28 bp):
AATGTATCGATACATTCTGTTAATTTTC
Found at i:52384 original size:20 final size:20
Alignment explanation
Indices: 52346--52385 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
52336 TAGCCTTTAG
*
52346 TCATGCATTTTCACTATGTT
1 TCATGCATTTTAACTATGTT
52366 TCATGCATTTTTAAC-ATGTT
1 TCATGCA-TTTTAACTATGTT
52386 CGGCATCTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.23, C:0.17, G:0.10, T:0.50
Consensus pattern (20 bp):
TCATGCATTTTAACTATGTT
Found at i:54070 original size:20 final size:20
Alignment explanation
Indices: 54007--54070 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
53997 GCTGTTTTGA
* *
54007 TTCCTCTTTTTTTTGCTATT
1 TTCCTCCTTTTTTTACTATT
* * *
54027 TTCCGTTCTATTTTTTTCTTTT
1 TTCC-TCCT-TTTTTTACTATT
*
54049 TTCCTCCTTTTTTTACTCTT
1 TTCCTCCTTTTTTTACTATT
54069 TT
1 TT
54071 GATACAACTG
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
20 16 0.46
21 5 0.14
22 14 0.40
ACGTcount: A:0.05, C:0.22, G:0.03, T:0.70
Consensus pattern (20 bp):
TTCCTCCTTTTTTTACTATT
Found at i:55721 original size:559 final size:558
Alignment explanation
Indices: 54627--55741 Score: 1982
Period size: 559 Copynumber: 2.0 Consensus size: 558
54617 TTATTATTAT
* *
54627 TTTATTTTTTATTTTTTAATAAACCGAAGGATTTATCCTAAAGATTGTAACTTTTTTCGAATTTT
1 TTTATTTTTTATTGTTTAATAAACCGAAGGATTTATCCTAAAGATTGCAACTTTTTTCGAATTTT
* * * *
54692 GAGAGAGGGTTTGAATGATACAATCTACACTCATCCGAGAAAGATGATTTTTGGTTATGTACATG
66 GAGAAAAGGTTTGAATGAGACAATCTACACTCATCCGAGAAAGATGATTTTTGGTCATGTACATG
54757 TATAGCCATTTACCATTTCGATTATGAATGTGTGAAATCCACTTGATGGAAGTAGATTTCCATTA
131 TATAGCCATTTACCATTTCGATTATGAATGTGTGAAATCCACTTGATGGAAGTAGATTTCCATTA
*
54822 TAATGGCTACTATATCAAATTTCAGATATTCGAGGATCCCGAGAAAAAAGACCTAGATGAAATTA
196 TAATGGCTACTATATCAAATTTCAGATATTCGAAGATCCCGAGAAAAAAGACCTAGATGAAATTA
*
54887 GGTGTCTACGACTGCCCTTTTTTGTCCGTTCCTAAGAATCAAGAACAAGATAAAAACCAAAGAAA
261 GGTGTCTACGACTGCCCCTTTTTGTCCGTTCCTAAGAATCAAGAACAAGATAAAAACCAAAGAAA
*
54952 CACAATTTCGTTCGGGTCACAAAATGAAAGTTGCAAAATTTAGAGAAAACATATTAAGCATAAGC
326 CACAATTTCATTCGGGTCACAAAATGAAAGTTGCAAAATTTAGAGAAAACATATTAAGCATAAGC
* *
55017 ATATGCAGAAACAAAATAACCATAAAAAATGATACCTAAGTTAGAAAAAAAGTTAAGTAAGACCA
391 ATATGCAAAAACAAAATAACCATAAAAAATGATACCTAAGTTAGAAAAAAAGTTAAGCAAGACCA
55082 GACTATCGGGCTAACGAAAAACAAAAATAGTTACCCAGAACTAAGTCAACAAGTAAGCAAAAAAG
456 GACTATCGGGCTAACGAAAAACAAAAATAGTTACCCAGAACTAAGTCAACAAGTAAGCAAAAAAG
55147 AAAGAAGTATCCTGAATCTAAGCTGATAGGCAAACATA
521 AAAGAAGTATCCTGAATCTAAGCTGATAGGCAAACATA
* *
55185 TTTATTTTTTCTTGTTTAATAAATCGACA-GATTTTATCCTAAAGATTGCAACTTTTTTCGAATT
1 TTTATTTTTTATTGTTTAATAAACCGA-AGGA-TTTATCCTAAAGATTGCAACTTTTTTCGAATT
55249 TTGAGAAAAGGTTTGAATGAGACAATCTACACTCATCCGAGAAAGATGAATTTTTGGTCATGTAC
64 TTGAGAAAAGGTTTGAATGAGACAATCTACACTCATCCGAGAAAGATG-ATTTTTGGTCATGTAC
*
55314 ATGTATAGCCATTTACCATTTTGATTATGAATGTGTGAAATCCACTTGATGGAAGTAGATTTCCA
128 ATGTATAGCCATTTACCATTTCGATTATGAATGTGTGAAATCCACTTGATGGAAGTAGATTTCCA
* * * *
55379 TTATAATGGCTACTATATCGAATTTCAGATATTCGAAGATCCCGAG-AAAAGGACTTGGATGAAA
193 TTATAATGGCTACTATATCAAATTTCAGATATTCGAAGATCCCGAGAAAAAAGACCTAGATGAAA
*
55443 TTAGGTGTCTACGACTGCCCCTTTTTGTCCGTTGCTAAGAATCAAGAACAAGATAAAAACCAAAG
258 TTAGGTGTCTACGACTGCCCCTTTTTGTCCGTTCCTAAGAATCAAGAACAAGATAAAAACCAAAG
55508 AAACACAATTTCATTCGGGTCACAAAATGAAAGTTGCAAAATTTAGAGAAAACATATTAAGCATA
323 AAACACAATTTCATTCGGGTCACAAAATGAAAGTTGCAAAATTTAGAGAAAACATATTAAGCATA
55573 AGCATATGCAAAAACAAAATAACCATAAAAAATGATACCTAAGTTAGAAAAAAAGTTAAGCAAGA
388 AGCATATGCAAAAACAAAATAACCATAAAAAATGATACCTAAGTTAGAAAAAAAGTTAAGCAAGA
*
55638 CCAGACTATCGGGCTAACGAAAAACAAAAATAGTTACCCAGAACTAAGTCAACAGGTAAGCAAAA
453 CCAGACTATCGGGCTAACGAAAAACAAAAATAGTTACCCAGAACTAAGTCAACAAGTAAGCAAAA
* * *
55703 GAGAAAGGAGTCTCCTGAATCTAAGCTGATAGGCAAACA
518 AAGAAAGAAGTATCCTGAATCTAAGCTGATAGGCAAACA
55742 AAGGGTAAAG
Statistics
Matches: 531, Mismatches: 23, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
558 26 0.05
559 382 0.72
560 123 0.23
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (558 bp):
TTTATTTTTTATTGTTTAATAAACCGAAGGATTTATCCTAAAGATTGCAACTTTTTTCGAATTTT
GAGAAAAGGTTTGAATGAGACAATCTACACTCATCCGAGAAAGATGATTTTTGGTCATGTACATG
TATAGCCATTTACCATTTCGATTATGAATGTGTGAAATCCACTTGATGGAAGTAGATTTCCATTA
TAATGGCTACTATATCAAATTTCAGATATTCGAAGATCCCGAGAAAAAAGACCTAGATGAAATTA
GGTGTCTACGACTGCCCCTTTTTGTCCGTTCCTAAGAATCAAGAACAAGATAAAAACCAAAGAAA
CACAATTTCATTCGGGTCACAAAATGAAAGTTGCAAAATTTAGAGAAAACATATTAAGCATAAGC
ATATGCAAAAACAAAATAACCATAAAAAATGATACCTAAGTTAGAAAAAAAGTTAAGCAAGACCA
GACTATCGGGCTAACGAAAAACAAAAATAGTTACCCAGAACTAAGTCAACAAGTAAGCAAAAAAG
AAAGAAGTATCCTGAATCTAAGCTGATAGGCAAACATA
Found at i:55791 original size:42 final size:42
Alignment explanation
Indices: 55745--56430 Score: 525
Period size: 42 Copynumber: 16.3 Consensus size: 42
55735 GCAAACAAAG
* ** * *
55745 GGTAAAGAAGTCTCCAAGGTCGAAGTTGACAAGCAAACTAAA
1 GGTAAAGAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAA
* * * ** *
55787 GGT-AAGAAAGCCTCC-CGGTTTAAAGCAAATAGGCAGACTAAA
1 GGTAAAG-AAGTCTCCAAGG-TCAAAGCCGACAGGCAGACTAAA
* * * ** * * *
55829 AGTAAAAAAGTATCCTCGATCAAAGCTGATAGGCAGACTAAA
1 GGTAAAGAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAA
* *
55871 GAT-AAGTAAGTCTCCAAGGTCAAAGCCGACAGGTAGACTAAA
1 GGTAAAG-AAGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAA
* * ** *
55913 GGTAAAGAAGTCTTCAGGGTCAAAGCCGATGGGCACAC-AAGA
1 GGTAAAGAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTAA-A
* ** *
55955 GGTGAAA-AAGTCTCCAAGGTTAAAGTTGACAAGCAGAC-AAGA
1 GGT-AAAGAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTAA-A
* * * * **
55997 GGTGAAGAAGCCTCTAAGGTCAAAGTCGATGGGCAGACTAAA
1 GGTAAAGAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAA
* * * * *
56039 GGTAAAGAATTCTCTAGGGTCAAAGCCGA-TGAGCAAACTAAA
1 GGTAAAGAAGTCTCCAAGGTCAAAGCCGACAG-GCAGACTAAA
* * * ** *
56081 GGTAAAAAAGTCTCTAAGATCAAAGCCGATGGGCAAACTAAA
1 GGTAAAGAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAA
* * *
56123 GGTAAAAAAGTCTGCC-AGGTCAAAGCC-ACAAGCAAACTAAA
1 GGTAAAGAAGTCT-CCAAGGTCAAAGCCGACAGGCAGACTAAA
* *
56164 GGTAATGAAGTCT-CATGGGTCAAAGCCGACAGGCAGACTAAA
1 GGTAAAGAAGTCTCCA-AGGTCAAAGCCGACAGGCAGACTAAA
*
56206 GGTAAAGAAATCAAGTCTCCAAGGTCAAAGCCGACAGGTAGACTAAA
1 GGTAAAG-----AAGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAA
* *
56253 GGTAAAGAAGTCT-CTAGAGTCAAAGCTGACAGGCAGACTAAA
1 GGTAAAGAAGTCTCCAAG-GTCAAAGCCGACAGGCAGACTAAA
* * *
56295 GATAAAGAAGTCTCCAAGGTCAAAGCCAACAGGTAGACTAAA
1 GGTAAAGAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAA
* * * * *
56337 -GTAAATAAGTCTCCAAGGTTAAAGCCGACAGACATATTAAA
1 GGTAAAGAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAA
* * * *
56378 GGTAAAGAAGTCTCCAGGGTCAAAGCTGA-TGAGCAGCCTAAA
1 GGTAAAGAAGTCTCCAAGGTCAAAGCCGACAG-GCAGACTAAA
*
56420 AGTAAAGAAGT
1 GGTAAAGAAGT
56431 TAGAAGGGTT
Statistics
Matches: 515, Mismatches: 103, Indels: 52
0.77 0.15 0.08
Matches are distributed among these distances:
39 1 0.00
41 81 0.16
42 377 0.73
43 17 0.03
47 37 0.07
48 2 0.00
ACGTcount: A:0.41, C:0.18, G:0.24, T:0.17
Consensus pattern (42 bp):
GGTAAAGAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAA
Found at i:56278 original size:172 final size:172
Alignment explanation
Indices: 55848--56386 Score: 533
Period size: 172 Copynumber: 3.2 Consensus size: 172
55838 GTATCCTCGA
* * *
55848 TCAAAGCTGATAGGCAGACTAAAGAT-AAG---TAAGTCTCCAAGGTCAAAGCCGACAGGTAGAC
1 TCAAAGCCGACAGGCAGACTAAAGGTAAAGAAATAAGTCTCCAAGGTCAAAGCCGACAGGTAGAC
* * *
55909 TAAAGGTAAAGAAGTCT-TCAGGGTCAAAGCCGATGGGCACAC-AAGAGGTGAAAAAGTCTCCAA
66 TAAAGGTAAAGAAGTCTCT-AGAGTCAAAGCCGATGGGCAAACTAA-AGGTAAAAAAGTCTCCAA
* ** * *
55972 GGTTAAAGTTGACAAGCAGAC-AAGAGGTGAA-GAAGCCTC-TAAGG
129 GGTCAAAG-CCACAAGCAGACTAA-AGGTAAATGAAGTCTCAT-AGG
* ** * * * * *
56016 TCAAAGTCGATGGGCAGACTAAAGGTAAAG-AAT---TCTCTAGGGTCAAAGCCGA-TGAGCAAA
1 TCAAAGCCGACAGGCAGACTAAAGGTAAAGAAATAAGTCTCCAAGGTCAAAGCCGACAG-GTAGA
*
56076 CTAAAGGTAAAAAAGTCTCTA-AGATCAAAGCCGATGGGCAAACTAAAGGTAAAAAAGTCTGCC-
65 CTAAAGGTAAAGAAGTCTCTAGAG-TCAAAGCCGATGGGCAAACTAAAGGTAAAAAAGTCT-CCA
* *
56139 AGGTCAAAGCCACAAGCAAACTAAAGGT-AATGAAGTCTCATGGG
128 AGGTCAAAGCCACAAGCAGACTAAAGGTAAATGAAGTCTCATAGG
56183 TCAAAGCCGACAGGCAGACTAAAGGTAAAGAAATCAAGTCTCCAAGGTCAAAGCCGACAGGTAGA
1 TCAAAGCCGACAGGCAGACTAAAGGTAAAGAAAT-AAGTCTCCAAGGTCAAAGCCGACAGGTAGA
* ** * * *
56248 CTAAAGGTAAAGAAGTCTCTAGAGTCAAAGCTGACAGGCAGACTAAAGATAAAGAAGTCTCCAAG
65 CTAAAGGTAAAGAAGTCTCTAGAGTCAAAGCCGATGGGCAAACTAAAGGTAAAAAAGTCTCCAAG
* *
56313 GTCAAAGCCAACAGGTAGACTAAA-GTAAAT-AAGTCTCCA-AGG
130 GTCAAAGCC-ACAAGCAGACTAAAGGTAAATGAAGTCT-CATAGG
* * * *
56355 TTAAAGCCGACAGACATATTAAAGGTAAAGAA
1 TCAAAGCCGACAGGCAGACTAAAGGTAAAGAA
56387 GTCTCCAGGG
Statistics
Matches: 307, Mismatches: 42, Indels: 40
0.79 0.11 0.10
Matches are distributed among these distances:
166 2 0.01
167 51 0.17
168 105 0.34
169 8 0.03
171 3 0.01
172 119 0.39
173 19 0.06
ACGTcount: A:0.42, C:0.18, G:0.24, T:0.16
Consensus pattern (172 bp):
TCAAAGCCGACAGGCAGACTAAAGGTAAAGAAATAAGTCTCCAAGGTCAAAGCCGACAGGTAGAC
TAAAGGTAAAGAAGTCTCTAGAGTCAAAGCCGATGGGCAAACTAAAGGTAAAAAAGTCTCCAAGG
TCAAAGCCACAAGCAGACTAAAGGTAAATGAAGTCTCATAGG
Found at i:56295 original size:214 final size:214
Alignment explanation
Indices: 55817--56403 Score: 520
Period size: 214 Copynumber: 2.8 Consensus size: 214
55807 TAAAGCAAAT
* * * * * * **
55817 AGGCAGACTAAAAGTAAAAAAGTATCCTCGA-TCAAAGCTGATAG-GCAGACTAAAGATAAGTAA
1 AGGCAGACTAAAGGTAAAGAAGTCT-CTAGAGTCAAAGCCGA-AGAGCAAACTAAAGATAAAAAA
* * * * * * * **
55880 GTCTCCAAGGTCAAAGCCGACAGGTAGACTAAAGGTAAAGAAGTCTTCAGGGTCAAAGCCGATGG
64 GTCTCCAAGATCAAAGCCAACAGGCAAACTAAA-GTAAAAAAGTCTCCAAGGTCAAAGCCGACAG
* * * * ** *
55945 GCACAC-AAGAGGTGAAA-AAGTCTCCAAGGTTAAAGTTGACAAGCAGAC-AAGAGGT---G-AA
128 ACAAACTAA-AGGT-AAAGAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAA-AGGTAAAGAAA
* * * * *
56003 -GAAGCCTCTAAGGTCAAAGTCGAT
190 TCAAGTCTCCAAGGTCAAAGCCGAC
* * * * *
56027 GGGCAGACTAAAGGTAAAGAATTCTCTAGGGTCAAAGCCGATGAGCAAACTAAAGGTAAAAAAGT
1 AGGCAGACTAAAGGTAAAGAAGTCTCTAGAGTCAAAGCCGAAGAGCAAACTAAAGATAAAAAAGT
* * **
56092 CTCTAAGATCAAAGCCGATGGGCAAACTAAAGGTAAAAAAGTCTGCC-AGGTCAAAGCC-ACA-A
66 CTCCAAGATCAAAGCCAACAGGCAAACTAAA-GTAAAAAAGTCT-CCAAGGTCAAAGCCGACAGA
*
56154 GCAAACTAAAGGTAATGAAGTCT-CATGGGTCAAAGCCGACAGGCAGACTAAAGGTAAAGAAATC
129 -CAAACTAAAGGTAAAGAAGTCTCCA-GGGTCAAAGCCGACAGGCAGACTAAAGGTAAAGAAATC
56218 AAGTCTCCAAGGTCAAAGCCGAC
192 AAGTCTCCAAGGTCAAAGCCGAC
* * * *
56241 AGGTAGACTAAAGGTAAAGAAGTCTCTAGAGTCAAAGCTGACAG-GCAGACTAAAGATAAAGAAG
1 AGGCAGACTAAAGGTAAAGAAGTCTCTAGAGTCAAAGCCGA-AGAGCAAACTAAAGATAAAAAAG
* * * * *
56305 TCTCCAAGGTCAAAGCCAACAGGTAGACTAAAGTAAATAAGTCTCCAAGGTTAAAGCCGACAGAC
65 TCTCCAAGATCAAAGCCAACAGGCAAACTAAAGTAAAAAAGTCTCCAAGGTCAAAGCCGACAGAC
* *
56370 ATATTAAAGGTAAAGAAGTCTCCAGGGTCAAAGC
130 AAACTAAAGGTAAAGAAGTCTCCAGGGTCAAAGC
56404 TGATGAGCAG
Statistics
Matches: 301, Mismatches: 58, Indels: 32
0.77 0.15 0.08
Matches are distributed among these distances:
208 4 0.01
209 40 0.13
210 97 0.32
211 1 0.00
212 3 0.01
213 23 0.08
214 129 0.43
215 4 0.01
ACGTcount: A:0.41, C:0.18, G:0.24, T:0.16
Consensus pattern (214 bp):
AGGCAGACTAAAGGTAAAGAAGTCTCTAGAGTCAAAGCCGAAGAGCAAACTAAAGATAAAAAAGT
CTCCAAGATCAAAGCCAACAGGCAAACTAAAGTAAAAAAGTCTCCAAGGTCAAAGCCGACAGACA
AACTAAAGGTAAAGAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAAGGTAAAGAAATCAAGT
CTCCAAGGTCAAAGCCGAC
Found at i:56427 original size:214 final size:211
Alignment explanation
Indices: 55736--56428 Score: 585
Period size: 210 Copynumber: 3.3 Consensus size: 211
55726 AGCTGATAGG
* * * * *
55736 CAAACAAAGGGTAAAGAAGTCTCCAAGGTCGAAGTTGACAAGCAAACTAAAGGT-AAG--A-AAG
1 CAAATAAA-GGTAAAGAAGTCTCCAGGGTCAAAGCTGA-AAGCAGACTAAAGGTAAAGAAACAAG
* * ** * * * * *
55797 CCTCC-CGGTTTAAAGCAAATAGGCAGACTAAAAGTAAAAAAGTATCCTCGA-TCAAAGCTGATA
64 CCTCCAAGG-TCAAAGCCGACAGGCAGACTAAAGGTAAAGAAGTCT-CTAGAGTCAAAGCTGA-A
*
55860 GGCAGACTAAAGAT-AAGTAAGTCTCCAAGGTCAAAGCCGACAGGTAGACTAAAGGTAAAGAAGT
126 GGCAGACTAAAGATAAAG-AAGTCTCCAAGGTCAAAGCCGACAGGTAGACTAAAGGTAAAAAAGT
* * ** *
55924 CTTCAGGGTCAAAGCCGATGGG
190 CTCCAAGGTCAAAGCCGACAGA
* * * * * *
55946 CACACAAGAGGTGAAA-AAGTCTCCAAGGTTAAAGTTGACAAGCAGAC-AAGAGGT---G-AAGA
1 CAAATAA-AGGT-AAAGAAGTCTCCAGGGTCAAAGCTGA-AAGCAGACTAA-AGGTAAAGAAACA
* * ** * * * *
56005 AGCCTCTAAGGTCAAAGTCGATGGGCAGACTAAAGGTAAAGAATTCTCTAGGGTCAAAGCCGATG
62 AGCCTCCAAGGTCAAAGCCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAGAGTCAAAGCTGAAG
* * * * * ** * *
56070 AGCAAACTAAAGGTAAAAAAGTCTCTAAGATCAAAGCCGATGGGCAAACTAAAGGTAAAAAAGTC
127 -GCAGACTAAAGATAAAGAAGTCTCCAAGGTCAAAGCCGACAGGTAGACTAAAGGTAAAAAAGTC
56135 TGCC-AGGTCAAAGCC-ACA-A
191 T-CCAAGGTCAAAGCCGACAGA
* * *
56154 GCAAACTAAAGGTAATGAAGTCT-CATGGGTCAAAGCCGACAGGCAGACTAAAGGTAAAGAAATC
1 -CAAA-TAAAGGTAAAGAAGTCTCCA-GGGTCAAAGCTGA-AAGCAGACTAAAGGTAAAGAAA-C
* *
56218 AAGTCTCCAAGGTCAAAGCCGACAGGTAGACTAAAGGTAAAGAAGTCTCTAGAGTCAAAGCTGAC
61 AAGCCTCCAAGGTCAAAGCCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAGAGTCAAAGCTGA-
* *
56283 AGGCAGACTAAAGATAAAGAAGTCTCCAAGGTCAAAGCCAACAGGTAGACTAAA-GTAAATAAGT
125 AGGCAGACTAAAGATAAAGAAGTCTCCAAGGTCAAAGCCGACAGGTAGACTAAAGGTAAAAAAGT
*
56347 CTCCAAGGTTAAAGCCGACAGA
190 CTCCAAGGTCAAAGCCGACAGA
* * * *
56369 CATATTAAAGGTAAAGAAGTCTCCAGGGTCAAAGCTGATGAGCAGCCTAAAAGTAAAGAA
1 CA-AATAAAGGTAAAGAAGTCTCCAGGGTCAAAGCTGA-AAGCAGACTAAAGGTAAAGAA
56429 GTTAGAAGGG
Statistics
Matches: 384, Mismatches: 73, Indels: 48
0.76 0.14 0.10
Matches are distributed among these distances:
208 5 0.01
209 42 0.11
210 150 0.39
211 9 0.02
212 3 0.01
213 23 0.06
214 147 0.38
215 5 0.01
ACGTcount: A:0.42, C:0.18, G:0.24, T:0.16
Consensus pattern (211 bp):
CAAATAAAGGTAAAGAAGTCTCCAGGGTCAAAGCTGAAAGCAGACTAAAGGTAAAGAAACAAGCC
TCCAAGGTCAAAGCCGACAGGCAGACTAAAGGTAAAGAAGTCTCTAGAGTCAAAGCTGAAGGCAG
ACTAAAGATAAAGAAGTCTCCAAGGTCAAAGCCGACAGGTAGACTAAAGGTAAAAAAGTCTCCAA
GGTCAAAGCCGACAGA
Found at i:56617 original size:101 final size:100
Alignment explanation
Indices: 56489--56682 Score: 280
Period size: 101 Copynumber: 1.9 Consensus size: 100
56479 GTTGACCAAG
* * * * * *
56489 GCAAAATTGATGAAGTCAATCATTTAAACGGTTAGTTAAAGAGTTAAAAGGGTTTGACCAAGGTG
1 GCAAAATCGATGAAGTAAATCAGTTAAAAGGTTAGTCAAAGAGTTAAAAGGGTTTAACCAAGGTG
56554 GTAACCATACGTCAAATCAAAATGAAAAAAATCAGA
66 GTAACCATACGTCAAATCAAAAT-AAAAAAATCAGA
* * *
56590 GCAAAATCGATGAAGTAAATCAGTTAAAAGGTTAGTCAAAGGGTTAGAAGGGTTTAACCAGGGTG
1 GCAAAATCGATGAAGTAAATCAGTTAAAAGGTTAGTCAAAGAGTTAAAAGGGTTTAACCAAGGTG
* *
56655 GTAACCATACGTTAAATCAGAATAAAAA
66 GTAACCATACGTCAAATCAAAATAAAAA
56683 GAATTTTACC
Statistics
Matches: 82, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
100 5 0.06
101 77 0.94
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.23
Consensus pattern (100 bp):
GCAAAATCGATGAAGTAAATCAGTTAAAAGGTTAGTCAAAGAGTTAAAAGGGTTTAACCAAGGTG
GTAACCATACGTCAAATCAAAATAAAAAAATCAGA
Found at i:56743 original size:44 final size:44
Alignment explanation
Indices: 56646--57780 Score: 228
Period size: 44 Copynumber: 25.5 Consensus size: 44
56636 GAAGGGTTTA
* *
56646 ACCAGGGTGGTAACCATACGTTAAATCAGAATAAAAAGAATTTT
1 ACCAAGGTGGTAACCATACGTTAAATCAGAATAAAAAGAATTTG
* * *
56690 ACCAAGGTGGTAACCATACGTTAGA-CAGGA-AAAAGGTAGATTTG
1 ACCAAGGTGGTAACCATACGTTAAATCAGAATAAAAAG-A-ATTTG
* * * * * * * *
56734 ACCACGGTGGTATCCATACATCAAATCAAAATGAAAAGAATCTA
1 ACCAAGGTGGTAACCATACGTTAAATCAGAATAAAAAGAATTTG
* * * ** * * ** * *
56778 ACTAGGGTGCTAAATATATGTCAAA-CAGAATAGAAGTGGA-GTG
1 ACCAAGGTGGTAACCATACGTTAAATCAGAATA-AAAAGAATTTG
* * * * * *
56821 TACCAGGGTGG-AAGCCATACATCAAATTAAAATGAAAAA-AATCTG
1 -ACCAAGGTGGTAA-CCATACGTTAAATCAGAAT-AAAAAGAATTTG
* * * * * * *
56866 ACTAAGGTGGTAACCATATGTCAGATCAAAATGAGAAAAGAATCTA
1 ACCAAGGTGGTAACCATACGTTAAATCAGAAT-A-AAAAGAATTTG
* * * * *
56912 ACCAGGGTGGTAACCATACGTTAGA-CAGGAT-AGAGGCAGATTTG
1 ACCAAGGTGGTAACCATACGTTAAATCAGAATAAAAAG-A-ATTTG
** * * * * * *
56956 ATTAGGGTGGTAACCATGCGTCAAATCAGAACAAAAA-AATCTA
1 ACCAAGGTGGTAACCATACGTTAAATCAGAATAAAAAGAATTTG
** * * * *
56999 AGTAAGATCGATGAAGTCA-ATCAGTTAAA-AAGTTAATCAAAAGATTAGAAGGGTTTG
1 ACCAAGGT-GGT-AA-CCATA-C-GTTAAATCAG--AAT--AAA-A--AGAA---TTTG
* * * * *
57056 ACTAAGGTGGTAACCATACATCAAATCAGAATGAAAAGAATCTG
1 ACCAAGGTGGTAACCATACGTTAAATCAGAATAAAAAGAATTTG
* * * * * * *
57100 ACTAGGGTGGTAACCATACGTCAGA-CAGGA-AAGAGGCAAATTTG
1 ACCAAGGTGGTAACCATACGTTAAATCAGAATAAAAAG--AATTTG
* * * * *
57144 A-CTAGAGTGGTAACCATATGTCAAATC-GAAATTAAAAGAATCTG
1 ACCAAG-GTGGTAACCATACGTTAAATCAG-AATAAAAAGAATTTG
* * * * * * * *
57188 ACCAGGGTGGTAATCATACATCAGA-CCGAAATGACAAA-ATTTTG
1 ACCAAGGTGGTAACCATACGTTAAATCAG-AAT-AAAAAGAATTTG
* * * * * *
57232 ACTAGGGTGGTAACCATATGTCAAAT-AGAAT-AGAGGCAGATTTG
1 ACCAAGGTGGTAACCATACGTTAAATCAGAATAAAAAG-A-ATTTG
* * * * *
57276 ACCAGGGTGATAACCATACGTCAAATCAGAATGAAAAGAATCTG
1 ACCAAGGTGGTAACCATACGTTAAATCAGAATAAAAAGAATTTG
* * * * * * * *
57320 ACTAGGGTGGTAACCATATGTCATA-CAGGA-AAGAGGCAGATTTG
1 ACCAAGGTGGTAACCATACGTTAAATCAGAATAAAAAG-A-ATTTG
* * * *
57364 ACTAGGGTGGTAACCATACGTTAAATC-GAAATGAAAAGAATCTG
1 ACCAAGGTGGTAACCATACGTTAAATCAG-AATAAAAAGAATTTG
* * * * * *
57408 ACTAGGGTGGTAACCATACGTCAGACCAAAATGAGAAAAG--TTTG
1 ACCAAGGTGGTAACCATACGTTAAATCAGAAT-A-AAAAGAATTTG
* * ** * * * * *
57452 ACTAGGGAAGTAACCATACATCAAA-CAGAACATAAATGGATTTG
1 ACCAAGGTGGTAACCATACGTTAAATCAGAATA-AAAAGAATTTG
* * * * * *
57496 ACTAGGGTGGTAACCATACGTCAAAT-AGAACAGAAACGGATTTG
1 ACCAAGGTGGTAACCATACGTTAAATCAGAATA-AAAAGAATTTG
* * * * *
57540 ACCAGGGTGGTAACCATACATCAAATCAGAATGAAAAGAATCTG
1 ACCAAGGTGGTAACCATACGTTAAATCAGAATAAAAAGAATTTG
* * * * * * *
57584 ACCAGGGTGGTAACCATACATCAGA-CAGGA-AAGAGGCAAATTTG
1 ACCAAGGTGGTAACCATACGTTAAATCAGAATAAAAAG--AATTTG
* * * * * *
57628 ATCGAGGTGGTAACCATACATCAAATCAGAATGAAAAGAATCTG
1 ACCAAGGTGGTAACCATACGTTAAATCAGAATAAAAAGAATTTG
* * * * *
57672 A-TAAGGGTGGTAACCATATGTCAAACCAAAATGAGAAAAG--TTTG
1 ACCAA-GGTGGTAACCATACGTTAAATCAGAAT-A-AAAAGAATTTG
* * * * * * *
57716 ACTAAAGTGGTTACCATACGTTAAA-CATAACAAAAGTGGATTTG
1 ACCAAGGTGGTAACCATACGTTAAATCAGAATAAAA-AGAATTTG
*
57760 ACCAGGGTGGTAACCATACGT
1 ACCAAGGTGGTAACCATACGT
57781 CAGACAGGGA
Statistics
Matches: 806, Mismatches: 212, Indels: 146
0.69 0.18 0.13
Matches are distributed among these distances:
41 4 0.00
42 24 0.03
43 50 0.06
44 567 0.70
45 55 0.07
46 60 0.07
47 9 0.01
48 2 0.00
49 1 0.00
50 5 0.01
51 1 0.00
52 3 0.00
53 5 0.01
54 7 0.01
55 3 0.00
56 2 0.00
57 8 0.01
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.22
Consensus pattern (44 bp):
ACCAAGGTGGTAACCATACGTTAAATCAGAATAAAAAGAATTTG
Found at i:57299 original size:132 final size:130
Alignment explanation
Indices: 57061--57705 Score: 576
Period size: 132 Copynumber: 4.9 Consensus size: 130
57051 GTTTGACTAA
* * * *
57061 GGTGGTAACCATACATCAAATCAG-AATGAAAAGAATCTGACTAGGGTGGTAACCATACGTCAGA
1 GGTGGTAACCATACATCAGA-CAGAAATGACAAG-ATTTGACTAGGGTGGTAACCATACGTCAAA
* * * * * * *
57125 CAGGAAAGAGGCAAATTTGACTAGAGTGGTAACCATATGTCAAATC-GAAATTAAAAGAATCTGA
64 TA-GAAAGAGACAGATTTGACCAGGGTGGTAACCATACGTCAAATCAG-AATGAAAAGAATCTGA
57189 CCAG
127 CCAG
* * * *
57193 GGTGGTAATCATACATCAGACCGAAATGACAAAATTTTGACTAGGGTGGTAACCATATGTCAAAT
1 GGTGGTAACCATACATCAGACAGAAATGACAAGA-TTTGACTAGGGTGGTAACCATACGTCAAAT
* * *
57258 AGAATAGAGGCAGATTTGACCAGGGTGATAACCATACGTCAAATCAGAATGAAAAGAATCTGACT
65 AGAA-AGAGACAGATTTGACCAGGGTGGTAACCATACGTCAAATCAGAATGAAAAGAATCTGACC
57323 AG
129 AG
** * *
57325 GGTGGTAACCATATGTCATACAGGAAA-GAGGC-AGATTTGACTAGGGTGGTAACCATACGTTAA
1 GGTGGTAACCATACATCAGACA-GAAATGA--CAAGATTTGACTAGGGTGGTAACCATACGTCAA
* * * * * * * * *
57388 ATCGAAATGA-AAAGAATCTGACTAGGGTGGTAACCATACGTCAGACCAAAATGAGAAA-AGTTT
63 ATAGAAA-GAGACAG-ATTTGACCAGGGTGGTAACCATACGTCAAATCAGAATGA-AAAGAATCT
*
57451 GACTAG
125 GACCAG
** *
57457 GGAAGTAACCATACATCAAACAGAACAT-A-AATGGATTTGACTAGGGTGGTAACCATACGTCAA
1 GGTGGTAACCATACATCAGACAGAA-ATGACAA--GATTTGACTAGGGTGGTAACCATACGTCAA
* * *
57520 ATAGAACAGAAACGGATTTGACCAGGGTGGTAACCATACATCAAATCAGAATGAAAAGAATCTGA
63 ATAGAA-AGAGACAGATTTGACCAGGGTGGTAACCATACGTCAAATCAGAATGAAAAGAATCTGA
57585 CCAG
127 CCAG
* *
57589 GGTGGTAACCATACATCAGACAGGAAA-GAGGCAA-ATTTGA-TCGAGGTGGTAACCATACATCA
1 GGTGGTAACCATACATCAGACA-GAAATGA--CAAGATTTGACTAG-GGTGGTAACCATACGTCA
* * * ** * * *
57651 AATCAGAATGA-AAAGAATCTGATAAGGGTGGTAACCATATGTCAAACCAAAATGA
62 AAT-AGAAAGAGACAG-ATTTGACCAGGGTGGTAACCATACGTCAAATCAGAATGA
57706 GAAAAGTTTG
Statistics
Matches: 419, Mismatches: 68, Indels: 52
0.78 0.13 0.10
Matches are distributed among these distances:
130 1 0.00
131 19 0.05
132 376 0.90
133 20 0.05
134 1 0.00
135 2 0.00
ACGTcount: A:0.40, C:0.16, G:0.23, T:0.21
Consensus pattern (130 bp):
GGTGGTAACCATACATCAGACAGAAATGACAAGATTTGACTAGGGTGGTAACCATACGTCAAATA
GAAAGAGACAGATTTGACCAGGGTGGTAACCATACGTCAAATCAGAATGAAAAGAATCTGACCAG
Found at i:57563 original size:88 final size:88
Alignment explanation
Indices: 57052--57697 Score: 545
Period size: 88 Copynumber: 7.3 Consensus size: 88
57042 ATTAGAAGGG
* * * * *
57052 TTTGACTAAGGTGGTAACCATACATCAAATCAGAATGAAA-AGAATCTGACTAGGGTGGTAACCA
1 TTTGACTAGGGTGGTAACCATACGTCAAA-CAGAAAGAAACAG-ATTTGACCAGGGTGGTAACCA
* * **
57116 TACGTCAGA-CAGGAAA-GAGGCA-AA
64 TACATCAAATCA-GAAATGA-AAAGAA
* * * * *
57140 TTTGACTAGAGTGGTAACCATATGTCAAATC-GAAATTAAA-AGAATCTGACCAGGGTGGTAATC
1 TTTGACTAGGGTGGTAACCATACGTCAAA-CAGAAA-GAAACAG-ATTTGACCAGGGTGGTAACC
* * *
57203 ATACATCAGA-CCGAAATGACAAA-AT
63 ATACATCAAATCAGAAATGA-AAAGAA
* * ** *
57228 TTTGACTAGGGTGGTAACCATATGTCAAATAGAATAGAGGCAGATTTGACCAGGGTGATAACCAT
1 TTTGACTAGGGTGGTAACCATACGTCAAACAGAA-AGAAACAGATTTGACCAGGGTGGTAACCAT
*
57293 ACGTCAAATCAG-AATGAAAAGAA
65 ACATCAAATCAGAAATGAAAAGAA
* * * ** *
57316 TCTGACTAGGGTGGTAACCATATGTCATACAGGAAAGAGGCAGATTTGACTAGGGTGGTAACCAT
1 TTTGACTAGGGTGGTAACCATACGTCAAACA-GAAAGAAACAGATTTGACCAGGGTGGTAACCAT
* *
57381 ACGTTAAATC-GAAATGAAAAGAA
65 ACATCAAATCAGAAATGAAAAGAA
* * * * **
57404 TCTGACTAGGGTGGTAACCATACGTCAGACCA-AAATGAGAAAAG-TTTGACTAGGGAAGTAACC
1 TTTGACTAGGGTGGTAACCATACGTCA-AACAGAAA-GA-AACAGATTTGACCAGGGTGGTAACC
* *
57467 ATACATCAAA-CAGAACAT-AAATGGA
63 ATACATCAAATCAGAA-ATGAAAAGAA
* *
57492 TTTGACTAGGGTGGTAACCATACGTCAAATAGAACAGAAACGGATTTGACCAGGGTGGTAACCAT
1 TTTGACTAGGGTGGTAACCATACGTCAAACAGAA-AGAAACAGATTTGACCAGGGTGGTAACCAT
57557 ACATCAAATCAG-AATGAAAAGAA
65 ACATCAAATCAGAAATGAAAAGAA
* * * * ** * *
57580 TCTGACCAGGGTGGTAACCATACATCAGACAGGAAAGAGGCAAATTTGATC-GAGGTGGTAACCA
1 TTTGACTAGGGTGGTAACCATACGTCAAACA-GAAAGAAACAGATTTGACCAG-GGTGGTAACCA
57644 TACATCAAATCAG-AATGAAAAGAA
64 TACATCAAATCAGAAATGAAAAGAA
* *
57668 TCTGA-TAAGGGTGGTAACCATATGTCAAAC
1 TTTGACT-AGGGTGGTAACCATACGTCAAAC
57698 CAAAATGAGA
Statistics
Matches: 468, Mismatches: 68, Indels: 44
0.81 0.12 0.08
Matches are distributed among these distances:
87 23 0.05
88 424 0.91
89 21 0.04
ACGTcount: A:0.40, C:0.16, G:0.23, T:0.21
Consensus pattern (88 bp):
TTTGACTAGGGTGGTAACCATACGTCAAACAGAAAGAAACAGATTTGACCAGGGTGGTAACCATA
CATCAAATCAGAAATGAAAAGAA
Found at i:57716 original size:88 final size:86
Alignment explanation
Indices: 57054--57782 Score: 491
Period size: 88 Copynumber: 8.3 Consensus size: 86
57044 TAGAAGGGTT
* * * * *
57054 TGACTAAGGTGGTAACCATACATCAAATCAGAATGA-AAAGAATCTGACTAGGGTGGTAACCATA
1 TGACTAGGGTGGTAACCATACGTCAAA-CA-AAAGAGAAA-AGTTTGACTAGGGTGGTAACCATA
* * * ** *
57118 CGTCAGA-CAGGAAAGAGGCA-AATT
63 CATCAAATCA-GAATGA-AAAGAATC
* * ** * * * *
57142 TGACTAGAGTGGTAACCATATGTCAAATCGAAATTA-AAAGAATCTGACCAGGGTGGTAATCATA
1 TGACTAGGGTGGTAACCATACGTCAAA-C-AAAAGAGAAA-AGTTTGACTAGGGTGGTAACCATA
* * * *
57206 CATCAGA-CCGAAATGACAAA-ATTT
63 CATCAAATCAG-AATGA-AAAGAATC
* * ** * *
57230 TGACTAGGGTGGTAACCATATGTCAAATAGAATAGAG-GCAGATTTGACCAGGGTGATAACCATA
1 TGACTAGGGTGGTAACCATACGTCAAACA-AA-AGAGAAAAG-TTTGACTAGGGTGGTAACCATA
*
57294 CGTCAAATCAGAATGAAAAGAATC
63 CATCAAATCAGAATGAAAAGAATC
* * **
57318 TGACTAGGGTGGTAACCATATGTCATACAGGAAAGAG-GCAGATTTGACTAGGGTGGTAACCATA
1 TGACTAGGGTGGTAACCATACGTCAAACA--AAAGAGAAAAG-TTTGACTAGGGTGGTAACCATA
* *
57382 CGTTAAATC-GAAATGAAAAGAATC
63 CATCAAATCAG-AATGAAAAGAATC
* **
57406 TGACTAGGGTGGTAACCATACGTCAGACCAAAATGAGAAAAGTTTGACTAGGGAAGTAACCATAC
1 TGACTAGGGTGGTAACCATACGTCA-AACAAAA-GAGAAAAGTTTGACTAGGGTGGTAACCATAC
* * *
57471 ATCAAA-CAGAACAT-AAATGGATT
64 ATCAAATCAG-A-ATGAAAAGAATC
* * * * *
57494 TGACTAGGGTGGTAACCATACGTCAAATAGAACAGAAACGGATTTGACCAGGGTGGTAACCATAC
1 TGACTAGGGTGGTAACCATACGTCAAACAAAAGAGAAA-AG-TTTGACTAGGGTGGTAACCATAC
57559 ATCAAATCAGAATGAAAAGAATC
64 ATCAAATCAGAATGAAAAGAATC
* * * * *
57582 TGACCAGGGTGGTAACCATACATCAGACAGGAAAGAGGCAAA-TTTGA-TCGAGGTGGTAACCAT
1 TGACTAGGGTGGTAACCATACGTCAAACA--AAAGA-GAAAAGTTTGACTAG-GGTGGTAACCAT
57645 ACATCAAATCAGAATGAAAAGAATC
62 ACATCAAATCAGAATGAAAAGAATC
* ** *
57670 TGA-TAAGGGTGGTAACCATATGTCAAACCAAAATGAGAAAAGTTTGACTAAAGTGGTTACCATA
1 TGACT-AGGGTGGTAACCATACGTCAAA-CAAAA-GAGAAAAGTTTGACTAGGGTGGTAACCATA
* * * * * *
57734 CGTTAAA-CATAA-CAAAAGTGGATT
63 CATCAAATCAGAATGAAAA--GAATC
*
57758 TGACCAGGGTGGTAACCATACGTCA
1 TGACTAGGGTGGTAACCATACGTCA
57783 GACAGGGAGG
Statistics
Matches: 526, Mismatches: 84, Indels: 62
0.78 0.12 0.09
Matches are distributed among these distances:
86 10 0.02
87 31 0.06
88 461 0.88
89 18 0.03
90 3 0.01
91 3 0.01
ACGTcount: A:0.40, C:0.16, G:0.23, T:0.21
Consensus pattern (86 bp):
TGACTAGGGTGGTAACCATACGTCAAACAAAAGAGAAAAGTTTGACTAGGGTGGTAACCATACAT
CAAATCAGAATGAAAAGAATC
Found at i:57726 original size:132 final size:130
Alignment explanation
Indices: 57054--57904 Score: 541
Period size: 132 Copynumber: 6.4 Consensus size: 130
57044 TAGAAGGGTT
* *
57054 TGACTAAGGTGGTAACCATACATCAAATCAGAATGAAA-A-G-AATCTGACTAGGGTGGTAACCA
1 TGACTAGGGTGGTAACCATACATCAAA-CAG---GAAAGAGGCAATTTGACTAGGGTGGTAACCA
* * ** * * * * * *
57116 TACGTCAGA-CAGGAAAGAGGCA-AATTTGACTAGAGTGGTAACCATATGTCAAATCGAAATTAA
62 TACGTCAAATCA-GAATGA-AAAGAATCTGA-TAGGGTGGTAACCATACGTCAAACCAAAATGAA
57179 AAGAATC
124 AAGAATC
* * * * ***
57186 TGACCAGGGTGGTAATCATACATCAGAC-CGAAATGACAAAATTTTGACTAGGGTGGTAACCATA
1 TGACTAGGGTGGTAACCATACATCAAACAGGAAA-GAGGCAA-TTTGACTAGGGTGGTAACCATA
* * * * * * * *
57250 TGTCAAAT-AGAAT-AGAGGCAGATTTGACCAGGGTGATAACCATACGTCAAATCAGAATGAAAA
64 CGTCAAATCAGAATGAAAAG-A-ATCTGA-TAGGGTGGTAACCATACGTCAAACCAAAATGAAAA
57313 GAATC
126 GAATC
** *
57318 TGACTAGGGTGGTAACCATATGTCATACAGGAAAGAGGCAGATTTGACTAGGGTGGTAACCATAC
1 TGACTAGGGTGGTAACCATACATCAAACAGGAAAGAGGCA-ATTTGACTAGGGTGGTAACCATAC
* *
57383 GTTAAATC-GAAATGAAAAGAATCTGACTAGGGTGGTAACCATACGTCAGACCAAAATGAGAAA-
65 GTCAAATCAG-AATGAAAAGAATCTGA-TAGGGTGGTAACCATACGTCAAACCAAAATGA-AAAG
* *
57446 AGTT
127 AATC
** * *
57450 TGACTAGGGAAGTAACCATACATCAAACAGAACATAAATGG--ATTTGACTAGGGTGGTAACCAT
1 TGACTAGGGTGGTAACCATACATCAAACAGGA-A-AGA-GGCAATTTGACTAGGGTGGTAACCAT
* * * * * * * *
57513 ACGTCAAAT-AGAACAGAAACGGATTTGACCAGGGTGGTAACCATACATCAAATCAGAATGAAAA
63 ACGTCAAATCAGAA-TGAAAAGAATCTGA-TAGGGTGGTAACCATACGTCAAACCAAAATGAAAA
57577 GAATC
126 GAATC
* * *
57582 TGACCAGGGTGGTAACCATACATCAGACAGGAAAGAGGCAAATTTGA-TCGAGGTGGTAACCATA
1 TGACTAGGGTGGTAACCATACATCAAACAGGAAAGAGGC-AATTTGACTAG-GGTGGTAACCATA
* *
57646 CATCAAATCAGAATGAAAAGAATCTGATAAGGGTGGTAACCATATGTCAAACCAAAATGAGAAA-
64 CGTCAAATCAGAATGAAAAGAATCTGAT-AGGGTGGTAACCATACGTCAAACCAAAATGA-AAAG
* *
57710 AGTT
127 AATC
** * * * ** * * *
57714 TGACTAAAGTGGTTACCATACGTTAAACATAACAAAAGTG-GATTTGACCAGGGTGGTAACCATA
1 TGACTAGGGTGGTAACCATACATCAAACAGGA-AAGAG-GCAATTTGACTAGGGTGGTAACCATA
* * * * *
57778 CGTCAGACAGGGAGGCAGAATGAAAAATAATCTGACCAGGGTGGTAAGCATACATCAAACCAAAA
64 CGTC--A-A---A-TCAGAATG-AAAAGAATCTGA-TAGGGTGGTAACCATACGTCAAACCAAAA
* *
57843 TGAGAAA-AGTT
120 TGA-AAAGAATC
* * ** * *
57854 TGACAAGGGTAGTAACCATATGTTAAACA-GAGCAGAGGCAGATTTGACTAG
1 TGACTAGGGTGGTAACCATACATCAAACAGGA-AAGAGGCA-ATTTGACTAG
57905 AGACTAAGCT
Statistics
Matches: 567, Mismatches: 110, Indels: 76
0.75 0.15 0.10
Matches are distributed among these distances:
127 4 0.01
129 4 0.01
130 3 0.01
131 15 0.03
132 414 0.73
133 25 0.04
134 7 0.01
135 3 0.01
138 2 0.00
139 11 0.02
140 79 0.14
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.21
Consensus pattern (130 bp):
TGACTAGGGTGGTAACCATACATCAAACAGGAAAGAGGCAATTTGACTAGGGTGGTAACCATACG
TCAAATCAGAATGAAAAGAATCTGATAGGGTGGTAACCATACGTCAAACCAAAATGAAAAGAATC
Found at i:58027 original size:46 final size:46
Alignment explanation
Indices: 57960--58063 Score: 190
Period size: 46 Copynumber: 2.3 Consensus size: 46
57950 TGAAGGGTTA
* *
57960 ACCAGGTCCTAACGGTAATACAATCAAATGAGGTGAGAAGTATTTG
1 ACCAGGTCCTAACAGCAATACAATCAAATGAGGTGAGAAGTATTTG
58006 ACCAGGTCCTAACAGCAATACAATCAAATGAGGTGAGAAGTATTTG
1 ACCAGGTCCTAACAGCAATACAATCAAATGAGGTGAGAAGTATTTG
58052 ACCAGGTCCTAA
1 ACCAGGTCCTAA
58064 TGCCAATATA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 56 1.00
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22
Consensus pattern (46 bp):
ACCAGGTCCTAACAGCAATACAATCAAATGAGGTGAGAAGTATTTG
Found at i:58071 original size:46 final size:46
Alignment explanation
Indices: 57960--58126 Score: 185
Period size: 46 Copynumber: 3.6 Consensus size: 46
57950 TGAAGGGTTA
* **
57960 ACCAGGTCCTAACGGTAATACAATCAAATGAGGTGAGAAGTATTTG
1 ACCAGGTCCTAATGCCAATACAATCAAATGAGGTGAGAAGTATTTG
*
58006 ACCAGGTCCTAACAG-CAATACAATCAAATGAGGTGAGAAGTATTTG
1 ACCAGGTCCTAA-TGCCAATACAATCAAATGAGGTGAGAAGTATTTG
* * ** * *
58052 ACCAGGTCCTAATGCCAATATAGTCAAACAAAAGTGAAAAG-AGTTTG
1 ACCAGGTCCTAATGCCAATACAATCAAA-TGAGGTGAGAAGTA-TTTG
* *
58099 ACCAAGTCCTAATGCCAATACAGTCAAA
1 ACCAGGTCCTAATGCCAATACAATCAAA
58127 CTAGGGTGGA
Statistics
Matches: 106, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
45 1 0.01
46 66 0.62
47 39 0.37
ACGTcount: A:0.40, C:0.19, G:0.20, T:0.22
Consensus pattern (46 bp):
ACCAGGTCCTAATGCCAATACAATCAAATGAGGTGAGAAGTATTTG
Found at i:58165 original size:37 final size:37
Alignment explanation
Indices: 58102--58174 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 37
58092 GAGTTTGACC
*
58102 AAGTCCTAATGCCAATACAGTCAAACTAGGGTGGAAA
1 AAGTCCTAACGCCAATACAGTCAAACTAGGGTGGAAA
* *
58139 AAGTTCTAACGCCAATACAGTTAAACTAGGGTGGAA
1 AAGTCCTAACGCCAATACAGTCAAACTAGGGTGGAA
58175 GAGTTTAACC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.40, C:0.18, G:0.22, T:0.21
Consensus pattern (37 bp):
AAGTCCTAACGCCAATACAGTCAAACTAGGGTGGAAA
Found at i:58223 original size:46 final size:46
Alignment explanation
Indices: 58144--58369 Score: 217
Period size: 46 Copynumber: 4.9 Consensus size: 46
58134 GGAAAAAGTT
* * * *
58144 CTAACGCCAATACAGTTAAACTAGGGTGGAAGAGTTTAACCAGGTC
1 CTAACGCCAATACAGTCAAACTAGAGTGAAAGAGTTTGACCAGGTC
* * *
58190 CTACCGCCAATATAGTCAAACTAGAGTGAAAGAGTTTGACTAGGT-
1 CTAACGCCAATACAGTCAAACTAGAGTGAAAGAGTTTGACCAGGTC
** * * *
58235 CTAAATACCAATACAGTCAAA-TGTGGGTGGAAAGAGTTTGACTAGGTC
1 CT-AACGCCAATACAGTCAAACT-AGAGT-GAAAGAGTTTGACCAGGTC
* * *
58283 CTAATGCTAATACAGTCAAATGTAG-GTGGAAAGAGTTTGACCAGGTC
1 CTAACGCCAATACAGTCAAA-CTAGAGT-GAAAGAGTTTGACCAGGTC
* *
58330 CTAACGCCAATACA-TTAAACGAGAGTGAAAAGAGTTTGAC
1 CTAACGCCAATACAGTCAAACTAGAGTG-AAAGAGTTTGAC
58370 TAGATACAAT
Statistics
Matches: 150, Mismatches: 22, Indels: 16
0.80 0.12 0.09
Matches are distributed among these distances:
45 6 0.04
46 73 0.49
47 67 0.45
48 3 0.02
49 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.23
Consensus pattern (46 bp):
CTAACGCCAATACAGTCAAACTAGAGTGAAAGAGTTTGACCAGGTC
Found at i:58362 original size:93 final size:91
Alignment explanation
Indices: 58143--58372 Score: 248
Period size: 93 Copynumber: 2.5 Consensus size: 91
58133 TGGAAAAAGT
* * * * * *
58143 TCTAACGCCAATACAGTTAAACTAGGGTGGAAGAGTTTAACCAGGTCCTACCGCCAATATAGTCA
1 TCTAACGCCAATACAGTTAAACGAGGGTGAAAGAGTTTGACTAGGTCCTAACGCCAATACAGTCA
*
58208 AACTAGAGTGAAAGAGTTTGACTAGG
66 AACTAGAGTGAAAGAGTTTGACCAGG
** * * * * *
58234 TCTAAATACCAATACAGTCAAATGTGGGTGGAAAGAGTTTGACTAGGTCCTAATGCTAATACAGT
1 TCT-AACGCCAATACAGTTAAACGAGGGT-GAAAGAGTTTGACTAGGTCCTAACGCCAATACAGT
*
58299 CAAATGTAG-GTGGAAAGAGTTTGACCAGG
64 CAAA-CTAGAGT-GAAAGAGTTTGACCAGG
*
58328 TCCTAACGCCAATACA-TTAAACGAGAGTGAAAAGAGTTTGACTAG
1 T-CTAACGCCAATACAGTTAAACGAGGGTG-AAAGAGTTTGACTAG
58373 ATACAATCAA
Statistics
Matches: 112, Mismatches: 21, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
91 3 0.03
92 20 0.18
93 57 0.51
94 30 0.27
95 2 0.02
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.24
Consensus pattern (91 bp):
TCTAACGCCAATACAGTTAAACGAGGGTGAAAGAGTTTGACTAGGTCCTAACGCCAATACAGTCA
AACTAGAGTGAAAGAGTTTGACCAGG
Found at i:58665 original size:92 final size:87
Alignment explanation
Indices: 58563--58760 Score: 200
Period size: 88 Copynumber: 2.2 Consensus size: 87
58553 GGTGGAGAGA
* * *
58563 AAGGGATATGATTAGGAATGAGT-GGTTGGAATATCCTTACCCTAAGGATATCAAGCTTTGTGAT
1 AAGGGATATGATTAGGAATGAGTAGGCT---ACA-CCTTACCC-AAGGAAATCAAGCTTTGTGAT
* * * * *
58627 TCATCAGTACCATCTAATGATTGGGTG
61 GCATCAATACCATCTAAGGACTGAGTG
* * * *
58654 AAGGGAATATGAATGGGAATGAGTAGGCTACACCTTGCCCCAGGAAATCAAGCTTTGTGATGCAT
1 AAGGG-ATATGATTAGGAATGAGTAGGCTACACCTTACCCAAGGAAATCAAGCTTTGTGATGCAT
* *
58719 CAATACCATCTAGGGGCTGAGTG
65 CAATACCATCTAAGGACTGAGTG
58742 AAGGGGATATGATTAGGAA
1 AA-GGGATATGATTAGGAA
58761 ATGTGTTTTC
Statistics
Matches: 88, Mismatches: 16, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
88 52 0.59
89 10 0.11
90 2 0.02
91 5 0.06
92 16 0.18
93 3 0.03
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27
Consensus pattern (87 bp):
AAGGGATATGATTAGGAATGAGTAGGCTACACCTTACCCAAGGAAATCAAGCTTTGTGATGCATC
AATACCATCTAAGGACTGAGTG
Found at i:62543 original size:128 final size:127
Alignment explanation
Indices: 62303--62536 Score: 351
Period size: 128 Copynumber: 1.8 Consensus size: 127
62293 CTCAAAAAGT
* * **
62303 ATCATTTCGTACCTTGATGGAAACCTGCTAAGATATGAAAAATTTTTGAAATCTTTTATACCCCT
1 ATCATTTCGTACCTTAATGGAAACCCGAAAAGATATGAAAAATTTTTGAAATCTTTTATACCCCT
* **
62368 ATGGATACCCATAGGAATATAAAAGATAAAAAATGATTAATATTTATTTATGTTTGGAAAAA
66 ACGGATACCCATAGGAATATAAAAGATAAAAAACAATTAATATTTATTTATGTTTGGAAAAA
* * *
62430 ATCATTTTGTACCTTAATGGATACCCGAAAAGATATGAAAAGTTTTTTGAAATCTTTTATACCCC
1 ATCATTTCGTACCTTAATGGAAACCCGAAAAGATATGAAAA-ATTTTTGAAATCTTTTATACCCC
* *
62495 TACGGATACCCATATGAATATAAAAGATTAAAAACAATTAAT
65 TACGGATACCCATAGGAATATAAAAGATAAAAAACAATTAAT
62537 TCTTATTGTA
Statistics
Matches: 94, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
127 35 0.37
128 59 0.63
ACGTcount: A:0.41, C:0.13, G:0.12, T:0.34
Consensus pattern (127 bp):
ATCATTTCGTACCTTAATGGAAACCCGAAAAGATATGAAAAATTTTTGAAATCTTTTATACCCCT
ACGGATACCCATAGGAATATAAAAGATAAAAAACAATTAATATTTATTTATGTTTGGAAAAA
Found at i:63931 original size:167 final size:164
Alignment explanation
Indices: 63656--64185 Score: 651
Period size: 166 Copynumber: 3.2 Consensus size: 164
63646 TAGATCGAAG
* * * * *
63656 AAAATCCCCCT-AAAAATATTTACAGAGAAGAAAACTCGGT-TTCTC--GAAAAAAGGAAAATTT
1 AAAATCCCCTTGAAAAA-ATTTACAGAGTAGAAAACACCGTATT-TCAAAAAAAAAGG--AATTT
** * * *
63717 CAAACAAAAACTCAAA-ACTCATGAAAATGAATTAATTTTTTAAAACTGAATTAATATGACTCAA
62 CAAGGAAAAAATCAAAAACTCATGAAAATGAATTAATTTTTGAAAACTGAATTAATATGAAT-AA
* *
63781 ATGATGATTTTTGATGAATTCTAAAAATTGAAAACCAAGA
126 ATAATGATGTTTGATGAATT-TAAAAATTGAAAACCAAGA
* * *
63821 AAAATCCCCTTGAAAAAATTTACAAAGTAGAAAACACCGTATTT-AAGAAAAAGGGAAGTTTCAA
1 AAAATCCCCTTGAAAAAATTTACAGAGTAGAAAACACCGTATTTCAAAAAAAAAGGAA-TTTCAA
*
63885 GGAAAAAAATCAAAAACTCATAAAAATGAATTAATTTTTGAAAACTGAATTAATATGAAATAAAT
65 GG-AAAAAATCAAAAACTCATGAAAATGAATTAATTTTTGAAAACTGAATTAATATG-AATAAAT
* *
63950 AATGATGTTTGATGAATTTAAAAATTTAAAACCAAGC
128 AATGATGTTTGATGAATTTAAAAATTGAAAACCAAGA
* **
63987 AAAATCCCCTCGAAAAAATTTACAGAGTAGAAAAACATTGTATTTCGAAAAAAAAAGGAATTTCA
1 AAAATCCCCTTGAAAAAATTTACAGAGTAG-AAAACACCGTATTTC-AAAAAAAAAGGAATTTCA
* * * *
64052 AGG-AAAAATAAAAAACTCATGAAAATGAATTAATATTTGAAAAATGAGTTAATATGAGATAAAT
64 AGGAAAAAATCAAAAACTCATGAAAATGAATTAATTTTTGAAAACTGAATTAATATGA-ATAAAT
*
64116 AATGATGTTTGATAAATTTTAAAAATTGAAAACCAAGA
128 AATGATGTTTGATGAA-TTTAAAAATTGAAAACCAAGA
*
64154 AAAATCCCCTTGAAAAAATTTACGGAGTAGAA
1 AAAATCCCCTTGAAAAAATTTACAGAGTAGAA
64186 CACAATGTAA
Statistics
Matches: 320, Mismatches: 32, Indels: 25
0.85 0.08 0.07
Matches are distributed among these distances:
164 2 0.01
165 37 0.12
166 141 0.44
167 119 0.37
168 10 0.03
169 11 0.03
ACGTcount: A:0.51, C:0.11, G:0.12, T:0.26
Consensus pattern (164 bp):
AAAATCCCCTTGAAAAAATTTACAGAGTAGAAAACACCGTATTTCAAAAAAAAAGGAATTTCAAG
GAAAAAATCAAAAACTCATGAAAATGAATTAATTTTTGAAAACTGAATTAATATGAATAAATAAT
GATGTTTGATGAATTTAAAAATTGAAAACCAAGA
Found at i:64068 original size:166 final size:166
Alignment explanation
Indices: 63730--64185 Score: 650
Period size: 167 Copynumber: 2.7 Consensus size: 166
63720 ACAAAAACTC
* * * *
63730 AAAACTCATGAAAATGAATTAATTTTTTAAAACTGAATTAATATG-ACTCAAATGATGATTTTTG
1 AAAACTCATGAAAATGAATTAATTTTTGAAAACTGAATTAATATGAAAT-AAATAATGATGTTTG
*
63794 ATGAATTCTAAAAATTGAAAACCAAGAAAAATCCCCTTGAAAAAATTTACAAAGTAG-AAAACAC
65 ATGAATT-TAAAAATTGAAAACCAAGAAAAATCCCCTTGAAAAAATTTACAGAGTAGAAAAACAC
* * *
63858 CGTATTTAAGAAAAAGGGAAGTTTCAAGGAAAAAAATCA
129 CGTATTTAAAAAAAAAGGAAGTTTCAAGG-AAAAAATAA
*
63897 AAAACTCATAAAAATGAATTAATTTTTGAAAACTGAATTAATATGAAATAAATAATGATGTTTGA
1 AAAACTCATGAAAATGAATTAATTTTTGAAAACTGAATTAATATGAAATAAATAATGATGTTTGA
* * * **
63962 TGAATTTAAAAATTTAAAACCAAGCAAAATCCCCTCGAAAAAATTTACAGAGTAGAAAAACATTG
66 TGAATTTAAAAATTGAAAACCAAGAAAAATCCCCTTGAAAAAATTTACAGAGTAGAAAAACACCG
64027 TATTTCGAAAAAAAAAGGAA-TTTCAAGG-AAAAATAA
131 TATTT--AAAAAAAAAGGAAGTTTCAAGGAAAAAATAA
* * * *
64063 AAAACTCATGAAAATGAATTAATATTTGAAAAATGAGTTAATATGAGATAAATAATGATGTTTGA
1 AAAACTCATGAAAATGAATTAATTTTTGAAAACTGAATTAATATGAAATAAATAATGATGTTTGA
* *
64128 TAAATTTTAAAAATTGAAAACCAAGAAAAATCCCCTTGAAAAAATTTACGGAGTAGAA
66 TGAA-TTTAAAAATTGAAAACCAAGAAAAATCCCCTTGAAAAAATTTACAGAGTAGAA
64186 CACAATGTAA
Statistics
Matches: 260, Mismatches: 24, Indels: 10
0.88 0.08 0.03
Matches are distributed among these distances:
166 115 0.44
167 124 0.48
168 10 0.04
169 11 0.04
ACGTcount: A:0.51, C:0.09, G:0.12, T:0.27
Consensus pattern (166 bp):
AAAACTCATGAAAATGAATTAATTTTTGAAAACTGAATTAATATGAAATAAATAATGATGTTTGA
TGAATTTAAAAATTGAAAACCAAGAAAAATCCCCTTGAAAAAATTTACAGAGTAGAAAAACACCG
TATTTAAAAAAAAAGGAAGTTTCAAGGAAAAAATAA
Found at i:64115 original size:19 final size:19
Alignment explanation
Indices: 64073--64115 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
64063 AAAACTCATG
**
64073 AAAATGAATTAATATTTGA
1 AAAATGAATTAATATGAGA
*
64092 AAAATGAGTTAATATGAGA
1 AAAATGAATTAATATGAGA
*
64111 TAAAT
1 AAAAT
64116 AATGATGTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.14, T:0.33
Consensus pattern (19 bp):
AAAATGAATTAATATGAGA
Found at i:65599 original size:42 final size:42
Alignment explanation
Indices: 65553--65657 Score: 122
Period size: 42 Copynumber: 2.5 Consensus size: 42
65543 GCCTGTGCTG
**
65553 ACGGGCAAATGATTGATAAAGGAATTTCCCAGGTCTAAGTCA
1 ACGGGCAAATGAAAGATAAAGGAATTTCCCAGGTCTAAGTCA
* * * *
65595 ACGGGTAGATGAAAGATAAAGGAGTTTCCCAGGTCTAAG-CTG
1 ACGGGCAAATGAAAGATAAAGGAATTTCCCAGGTCTAAGTC-A
* *
65637 ACGGGCAGACGAAAGATAAAG
1 ACGGGCAAATGAAAGATAAAG
65658 AAGTCTCTCG
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
41 1 0.02
42 53 0.98
ACGTcount: A:0.37, C:0.15, G:0.29, T:0.19
Consensus pattern (42 bp):
ACGGGCAAATGAAAGATAAAGGAATTTCCCAGGTCTAAGTCA
Found at i:65678 original size:42 final size:42
Alignment explanation
Indices: 65595--65720 Score: 119
Period size: 42 Copynumber: 3.0 Consensus size: 42
65585 GTCTAAGTCA
* * * * * * * *
65595 ACGGGTAGATGAAAGATAAAGGAGTTTCCCAGGTCTAAGCTG
1 ACGGGCAGACGAAAGATAAAGAAGTCTCTCGGGTTTGAGCTG
65637 ACGGGCAGACGAAAGATAAAGAAGTCTCTCGGGTTTGAGCTG
1 ACGGGCAGACGAAAGATAAAGAAGTCTCTCGGGTTTGAGCTG
** * *
65679 ACAAGCAGAC-AATTGATAAAGAAAGTCTCTCGAGTTTGAGCT
1 ACGGGCAGACGAA-AGATAAAG-AAGTCTCTCGGGTTTGAGCT
65721 AATGGACTAA
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
41 2 0.03
42 49 0.70
43 19 0.27
ACGTcount: A:0.34, C:0.16, G:0.29, T:0.21
Consensus pattern (42 bp):
ACGGGCAGACGAAAGATAAAGAAGTCTCTCGGGTTTGAGCTG
Found at i:65840 original size:85 final size:85
Alignment explanation
Indices: 65744--65906 Score: 231
Period size: 85 Copynumber: 1.9 Consensus size: 85
65734 TTAATAAAGG
* * *
65744 AAGTCTCCTGGGTCTAA-ATCGACGGGCAGACGATTAATAAAG-GAGTCTCTTGGGTCTAAGTCG
1 AAGTCTCCTGGGTCTAAGCT-GACGGGCAAACGATGAATAAAGAG-GTCTCTTGGGTCTAAGTCG
*
65807 ATGGGTAGACAAAAGCTAAAAA
64 ACGGGTAGACAAAAGCTAAAAA
* * *
65829 AAGTCTCCTGGGTCTAAGCTGACGGGCAAATGATGGATAAAGAGGTCTCTTGGGTCTAAGTTGAC
1 AAGTCTCCTGGGTCTAAGCTGACGGGCAAACGATGAATAAAGAGGTCTCTTGGGTCTAAGTCGAC
65894 GGGTAGACAAAAG
66 GGGTAGACAAAAG
65907 ATGAAGATGT
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
85 67 0.97
86 2 0.03
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.23
Consensus pattern (85 bp):
AAGTCTCCTGGGTCTAAGCTGACGGGCAAACGATGAATAAAGAGGTCTCTTGGGTCTAAGTCGAC
GGGTAGACAAAAGCTAAAAA
Found at i:65919 original size:42 final size:42
Alignment explanation
Indices: 65737--65919 Score: 134
Period size: 42 Copynumber: 4.3 Consensus size: 42
65727 CTAACGATTA
* * * * **
65737 ATAAAGGAAGTCTCCTGGGTCTAAATCGACGGGCAGACGATTA-
1 ATAAA-GAAGTCTCTTGGGTCTAAGTTGACGGGTAGAC-AAAAG
* * *
65780 ATAAAGGAGTCTCTTGGGTCTAAGTCGATGGGTAGACAAAAG
1 ATAAAGAAGTCTCTTGGGTCTAAGTTGACGGGTAGACAAAAG
* * * * * * ** **
65822 CTAAAAAAAGTCTCCTGGGTCTAAGCTGACGGGCAAATGATGG
1 AT-AAAGAAGTCTCTTGGGTCTAAGTTGACGGGTAGACAAAAG
*
65865 ATAAAGAGGTCTCTTGGGTCTAAGTTGACGGGTAGACAAAAG
1 ATAAAGAAGTCTCTTGGGTCTAAGTTGACGGGTAGACAAAAG
* *
65907 ATGAAGATGTCTC
1 ATAAAGAAGTCTC
65920 CCAAGTCTAA
Statistics
Matches: 105, Mismatches: 33, Indels: 5
0.73 0.23 0.03
Matches are distributed among these distances:
41 2 0.02
42 69 0.66
43 34 0.32
ACGTcount: A:0.33, C:0.15, G:0.29, T:0.23
Consensus pattern (42 bp):
ATAAAGAAGTCTCTTGGGTCTAAGTTGACGGGTAGACAAAAG
Found at i:65956 original size:85 final size:83
Alignment explanation
Indices: 65767--66027 Score: 249
Period size: 85 Copynumber: 3.1 Consensus size: 83
65757 CTAAATCGAC
* * * * *
65767 GGGCAGACGATTAATAAAG-GAGTCTCTTGGGTCTAAGTCGATGGGTAGACAAAAGCTAAAAAAA
1 GGGCAGAAGATTGATAAAGAG-GTCTCTTGGGTCTAAGTCGACGGGTAGACAAAAG--ATAAAGA
* * ** *
65831 GTCTCCTGGGTCTAAGCTGAC
63 GTCTCCCGAGTCTAAGCCAAT
* * *
65852 GGGCA-AATGATGGATAAAGAGGTCTCTTGGGTCTAAGTTGACGGGTAGACAAAAGATGAAGATG
1 GGGCAGAA-GATTGATAAAGAGGTCTCTTGGGTCTAAGTCGACGGGTAGACAAAAGATAAAGA-G
* *
65916 TCTCCCAAGTCTAAGCCCAT
64 TCTCCCGAGTCTAAGCCAAT
** * *
65936 GGGCAGAAGATTGATGAAAGAAATCTCTAGGGTCTGAA-TCGACGGGCAGACAAAAGATAAAGGA
1 GGGCAGAAGATTGAT-AAAGAGGTCTCTTGGGTCT-AAGTCGACGGGTAGACAAAAGATAAA-GA
*
66000 GTCTCCCGAGTCGAAGCCAAT
63 GTCTCCCGAGTCTAAGCCAAT
66021 GGGCAGA
1 GGGCAGA
66028 CAAAAGCTAA
Statistics
Matches: 145, Mismatches: 24, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
83 4 0.03
84 27 0.19
85 109 0.75
86 5 0.03
ACGTcount: A:0.34, C:0.17, G:0.30, T:0.20
Consensus pattern (83 bp):
GGGCAGAAGATTGATAAAGAGGTCTCTTGGGTCTAAGTCGACGGGTAGACAAAAGATAAAGAGTC
TCCCGAGTCTAAGCCAAT
Found at i:66153 original size:42 final size:42
Alignment explanation
Indices: 65795--66153 Score: 136
Period size: 42 Copynumber: 8.5 Consensus size: 42
65785 GGAGTCTCTT
* * * * * * * *
65795 GGGTCTAAGTCGATGGGTAGACAAAAGCTAAAAAAAGTCTCCT
1 GGGTCTAAGCCGACGGGCAGACAAAAGAT-GAAGAGGTCTCCA
* * ** ** * **
65838 GGGTCTAAGCTGACGGGCAAATGATGGATAAAGAGGTCTCTT
1 GGGTCTAAGCCGACGGGCAGACAAAAGATGAAGAGGTCTCCA
** * *
65880 GGGTCTAAGTTGACGGGTAGACAAAAGATGAAGATGTCTCCCA
1 GGGTCTAAGCCGACGGGCAGACAAAAGATGAAGAGGTCT-CCA
* * * ** ** *
65923 -AGTCTAAGCCCATGGGCAGA-AGATTGATGAAAGAAATCTCTA
1 GGGTCTAAGCCGACGGGCAGACA-AAAGATG-AAGAGGTCTCCA
* * *
65965 GGGTCTGAA-TCGACGGGCAGACAAAAGATAAAG-GAGTCTCCC
1 GGGTCT-AAGCCGACGGGCAGACAAAAGATGAAGAG-GTCTCCA
* * * * * * * * *
66007 GAGTCGAAGCCAATGGGCAGACAAAAGCTAAAGAAAGTTTCCC
1 GGGTCTAAGCCGACGGGCAGACAAAAGATGAAG-AGGTCTCCA
* * * * * *
66050 GAG-CTAAGCCGACAGGCAAACAATAGATGAAGTGGTTTCCCA
1 GGGTCTAAGCCGACGGGCAGACAAAAGATGAAGAGGTCT-CCA
*** * *
66092 -GGTCTAAGCCGATAAGCAGACGAAAGATGAAGAGGTCTCTA
1 GGGTCTAAGCCGACGGGCAGACAAAAGATGAAGAGGTCTCCA
66133 GGGTCTAAGCCGACGGGCAGA
1 GGGTCTAAGCCGACGGGCAGA
66154 AGATTCATAA
Statistics
Matches: 226, Mismatches: 77, Indels: 27
0.68 0.23 0.08
Matches are distributed among these distances:
41 10 0.04
42 160 0.71
43 53 0.23
44 3 0.01
ACGTcount: A:0.35, C:0.18, G:0.29, T:0.18
Consensus pattern (42 bp):
GGGTCTAAGCCGACGGGCAGACAAAAGATGAAGAGGTCTCCA
Found at i:67586 original size:157 final size:156
Alignment explanation
Indices: 67371--68481 Score: 1108
Period size: 157 Copynumber: 7.1 Consensus size: 156
67361 GTTGAAGAAA
* * * * * * *
67371 AAATTATGAAAATGCCCTTAGGGGTATATCTTTGACGTAAAAGTATCCCGATACCCCTAAAGGAC
1 AAATTACGAAAATGCCCCTATGGGTATACCTTCGACGTAAAAGTACCCCGATAACCCTAAAGGAC
* * * * *
67436 TTAAAAAGGACTATAAAAGGGGTGAACCTATCCT-TATACCCACCTTCGGCATAAAAGTGGACCC
66 TTAAAAA-GACTAGAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGTAGACCC
* * * *
67500 AGTGACAACCTAGGACTCAAATCTAAA
130 GGTGACAACCTAGGACTCGATTCTAAG
* * * * *
67527 AAATTACAAAAATGCCCCTATGGGTATACCTTTTGATGTAAAAGTACCCCGAAAACCCTAAAAGA
1 AAATTACGAAAATGCCCCTATGGGTATACC-TTCGACGTAAAAGTACCCCGATAACCCTAAAGGA
* *
67592 CTTAAAAATACTAAAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAA-TCAGACC
65 CTTAAAAAGACTAGAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGT-AGACC
* * *
67656 CAGTGACAACCTAGGACCCGATTTTAAG
129 CGGTGACAACCTAGGACTCGATTCTAAG
* * * ** * * ** * * *
67684 AAATTATGAAAATGTCCCTATGGTTATATGTTTGACGTAAAAGTATCATGGTACCCCTTAAGGAC
1 AAATTACGAAAATGCCCCTATGGGTATACCTTCGACGTAAAAGTACCCCGATAACCCTAAAGGAC
* * * * **
67749 TTAAAAAGGACTATAAAAGGGGTGAACCTATCCTAAATACCCACCTTCGGCATCAAAGCGGACCC
66 TTAAAAA-GACTAGAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGTAGACCC
* * * *
67814 GGTGATAATCTAGTACTC-AGTTTTAAG
130 GGTGACAACCTAGGACTCGA-TTCTAAG
* * ** *
67841 AAATTACAAAAATGCCCTTATAAGTATACCTTCGACGTAAAAGTACCTC-AGTAACCCTAAAGGA
1 AAATTACGAAAATGCCCCTATGGGTATACCTTCGACGTAAAAGTACCCCGA-TAACCCTAAAGGA
* * ** * *
67905 CCT-CAAA-ACTAGAAAAGGGATGAAGGTATCTTAAATGCCCACCTTCGGCATAAAAGCAGACCC
65 CTTAAAAAGACTAGAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGTAGACCC
* *
67968 GGTGACAACCTAAGACTCGATTCTAGG
130 GGTGACAACCTAGGACTCGATTCTAAG
* * *
67995 AAATTACAAAAATGCCTCTATGGGTATACCTTCGACGTAAAAGTACCTCCG-TAACCCTAAAAGA
1 AAATTACGAAAATGCCCCTATGGGTATACCTTCGACGTAAAAGTACC-CCGATAACCCTAAAGGA
* * * *
68059 CCTAAAAAGGCTAGAAAAGGGATGAACCTATCCTAAATGCCCACCTTTGGCATAAAAGCAGACCC
65 CTTAAAAAGACTAGAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGTAGACCC
* *
68124 GATGACAACTTAGGACTCGATTCTAAG
130 GGTGACAACCTAGGACTCGATTCTAAG
* * * * * ** *
68151 AAATTACGAAAATGCCCTTATGGGTATACTTTCAATGTAAAAGTACCCTGGCAACCCTAAAAGAC
1 AAATTACGAAAATGCCCCTATGGGTATACCTTCGACGTAAAAGTACCCCGATAACCCTAAAGGA-
* * * * *
68216 CTAAAAAAGACTAGAAAAGGGATGAATCTATCCTAACTGCCCACCTTTGGCATAAAA-TCAAACC
65 CTTAAAAAGACTAGAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGT-AGACC
* * * * *
68280 CGATGAAAACCTAAGACTCGGTTCTAGG
129 CGGTGACAACCTAGGACTCGATTCTAAG
* ** * * ** * *
68308 AAATTATGAAAATGTTCCTATGGGTATACCTTCGACGTAAATGTACCCTGGCAACCCTTAAGGAT
1 AAATTACGAAAATGCCCCTATGGGTATACCTTCGACGTAAAAGTACCCCGATAACCCTAAAGGAC
* ** * * *
68373 TTAAAAAGACTAGAAAAGGG-TGAACCTATCCTAAATACCCACCTTCAACATAAAAATGGACCTG
66 TTAAAAAGACTAGAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGTAGACCCG
* *
68437 GTGATAACCTAGGACTCGATTTTAA-
131 GTGACAACCTAGGACTCGATTCTAAG
* *
68462 AAATTATGAAAATACCCCTA
1 AAATTACGAAAATGCCCCTA
68482 AGGAATACTT
Statistics
Matches: 793, Mismatches: 146, Indels: 34
0.82 0.15 0.03
Matches are distributed among these distances:
154 142 0.18
155 59 0.07
156 233 0.29
157 359 0.45
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.23
Consensus pattern (156 bp):
AAATTACGAAAATGCCCCTATGGGTATACCTTCGACGTAAAAGTACCCCGATAACCCTAAAGGAC
TTAAAAAGACTAGAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGTAGACCCG
GTGACAACCTAGGACTCGATTCTAAG
Found at i:68337 original size:467 final size:467
Alignment explanation
Indices: 67371--68481 Score: 1283
Period size: 467 Copynumber: 2.4 Consensus size: 467
67361 GTTGAAGAAA
* * * *
67371 AAATTATGAAAATGCCCTTAGGGGTATATCTTTGACGTAAAAGTATCCCGATACCCCTAAAGGAC
1 AAATTATGAAAATGCCCTTATGGGTATACCTTCGACGTAAAAGTA-CCCG-TAACCCTAAAGGAC
*
67436 TTAAAAAGGACTATAAAAGGGGTGAACCTATCCTT--ATACCCACCTTCGGCATAAAAGTGGACC
64 TTAAAAA-GACTAGAAAA-GGGTGAACCTAT-CTTAAATACCCACCTTCGGCATAAAAGTGGACC
* * * * *
67499 CAGTGACAACCTAGGACTCAAATCTAAAAAATTACAAAAATGCCCCTATGGGTATACCTTTTGAT
126 CGGTGACAACCTAGGACTCGATTCTAAAAAATTACAAAAATGCCCCTATGGGTATACCTTTCGAC
* *
67564 GTAAAAGTACCCCGAAAACCCTAAAAGACTTAAAAATACTAAAAAAGGGATGAACCTATCCTAAA
191 GTAAAAGTACCCCGAAAACCCTAAAAGACCTAAAAAGACTAAAAAAGGGATGAACCTATCCTAAA
* * *
67629 TGCCCACCTTCGGCATAAAATCAGACCCAGTGACAACCTAGGACCCGATTTTAAGAAATTATGAA
256 TGCCCACCTTCGGCATAAAAGCAGACCCAGTGACAACCTAGGACCCGATTCTAAGAAATTACGAA
* ** * * * * * * *
67694 AATGTCCCTATGGTTATATGTTTGACGTAAAAGTATCATGGTACCCCTTAAGGACTTAAAAAGGA
321 AATGTCCCTATGGGTATATGTTCAACGTAAAAGTACCATGGCAACCCTAAAAGACCTAAAAAAGA
* * * ** * * *
67759 CTATAAAAGGGGTGAACCTATCCTAAATACCCACCTTCGGCATCAAAGCGGACCCGGTGATAATC
386 CTAGAAAAGGGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAGCAAACCCGATGAAAACC
*
67824 TAGTACTCAGTTTTAAG
451 TAGTACTCAGTTCTAAG
** **
67841 AAATTACAAAAATGCCCTTATAAGTATACCTTCGACGTAAAAGTACCTCAGTAACCCTAAAGGAC
1 AAATTATGAAAATGCCCTTATGGGTATACCTTCGACGTAAAAGTACC-C-GTAACCCTAAAGGAC
* * ** * **
67906 CT-CAAA-ACTAGAAAAGGGATGAAGGTATCTTAAATGCCCACCTTCGGCATAAAAGCAGACCCG
64 TTAAAAAGACTAGAAAAGGG-TGAACCTATCTTAAATACCCACCTTCGGCATAAAAGTGGACCCG
* ** *
67969 GTGACAACCTAAGACTCGATTCTAGGAAATTACAAAAATGCCTCTATGGGTATACC-TTCGACGT
128 GTGACAACCTAGGACTCGATTCTAAAAAATTACAAAAATGCCCCTATGGGTATACCTTTCGACGT
* * *
68033 AAAAGTACCTCCG-TAACCCTAAAAGACCTAAAAAGGCTAGAAAAGGGATGAACCTATCCTAAAT
193 AAAAGTACC-CCGAAAACCCTAAAAGACCTAAAAAGACTAAAAAAGGGATGAACCTATCCTAAAT
* * *
68097 GCCCACCTTTGGCATAAAAGCAGACCC-GATGACAACTTAGGACTCGATTCTAAGAAATTACGAA
257 GCCCACCTTCGGCATAAAAGCAGACCCAG-TGACAACCTAGGACCCGATTCTAAGAAATTACGAA
* *
68161 AATG-CCCTTATGGGTATACT-TTCAATGTAAAAGTACCCTGGCAACCCTAAAAGACCTAAAAAA
321 AATGTCCC-TATGGGTATA-TGTTCAACGTAAAAGTACCATGGCAACCCTAAAAGACCTAAAAAA
* * * * *
68224 GACTAGAAAAGGGATGAATCTATCCTAACTGCCCACCTTTGGCATAAAATCAAACCCGATGAAAA
384 GACTAGAAAAGGGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAGCAAACCCGATGAAAA
* *
68289 CCTAAG-ACTCGGTTCTAGG
449 CCT-AGTACTCAGTTCTAAG
* * * *
68308 AAATTATGAAAATGTTCC-TATGGGTATACCTTCGACGTAAATGTACCCTGGCAACCCTTAAGGA
1 AAATTATGAAAATG-CCCTTATGGGTATACCTTCGACGTAAAAGTACCC--GTAACCCTAAAGGA
* * ** * *
68372 TTTAAAAAGACTAGAAAAGGGTGAACCTATCCTAAATACCCACCTTCAACATAAAAATGGACCTG
63 CTTAAAAAGACTAGAAAAGGGTGAACCTATCTTAAATACCCACCTTCGGCATAAAAGTGGACCCG
* * ** *
68437 GTGATAACCTAGGACTCGATT-TTAAAAATTATGAAAATACCCCTA
128 GTGACAACCTAGGACTCGATTCTAAAAAATTACAAAAATGCCCCTA
68482 AGGAATACTT
Statistics
Matches: 532, Mismatches: 95, Indels: 31
0.81 0.14 0.05
Matches are distributed among these distances:
466 11 0.02
467 310 0.58
468 140 0.26
469 17 0.03
470 53 0.10
471 1 0.00
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.23
Consensus pattern (467 bp):
AAATTATGAAAATGCCCTTATGGGTATACCTTCGACGTAAAAGTACCCGTAACCCTAAAGGACTT
AAAAAGACTAGAAAAGGGTGAACCTATCTTAAATACCCACCTTCGGCATAAAAGTGGACCCGGTG
ACAACCTAGGACTCGATTCTAAAAAATTACAAAAATGCCCCTATGGGTATACCTTTCGACGTAAA
AGTACCCCGAAAACCCTAAAAGACCTAAAAAGACTAAAAAAGGGATGAACCTATCCTAAATGCCC
ACCTTCGGCATAAAAGCAGACCCAGTGACAACCTAGGACCCGATTCTAAGAAATTACGAAAATGT
CCCTATGGGTATATGTTCAACGTAAAAGTACCATGGCAACCCTAAAAGACCTAAAAAAGACTAGA
AAAGGGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAGCAAACCCGATGAAAACCTAGTA
CTCAGTTCTAAG
Found at i:70383 original size:50 final size:51
Alignment explanation
Indices: 70323--70486 Score: 199
Period size: 51 Copynumber: 3.2 Consensus size: 51
70313 AAAATAACAG
* * *
70323 GGTTGGAGTATCCCTGATTATGGAAAATCAGTG-TTTCGAAAAAAAATCGA
1 GGTTGGAGTATCCCCGATTATGGAAAATCAGTGTTTTAGAAATAAAATCGA
* * *
70373 GGTTGGAGTATCCCCGATTATGAAAAATC-GATGTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGGAAAATCAG-TGTTTTAGAAATAAAATCGA
* * *
70424 GGTTGGAGTCTCCCCGATTGTGGAAAATTAGTGTTTTAGAAATAAAA-CTGA
1 GGTTGGAGTATCCCCGATTATGGAAAATCAGTGTTTTAGAAATAAAATC-GA
*
70475 GGTTAGAGTATC
1 GGTTGGAGTATC
70487 TCTTCAGAAA
Statistics
Matches: 97, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
49 1 0.01
50 30 0.31
51 65 0.67
52 1 0.01
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.30
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGGAAAATCAGTGTTTTAGAAATAAAATCGA
Found at i:70576 original size:47 final size:48
Alignment explanation
Indices: 70524--70615 Score: 141
Period size: 47 Copynumber: 1.9 Consensus size: 48
70514 CTTGATTATG
*
70524 GAAAATCGGTGTTTTGGAAATAAAATCGGGGTT-GGAGTATCCCTTTA
1 GAAAATCGGTGTTTTGGAAATAAAACCGGGGTTAGGAGTATCCCTTTA
**
70571 GAAAATTTGTGTTTTGGAAATAAAACCGGGGTTAAGGAGTATCCC
1 GAAAATCGGTGTTTTGGAAATAAAACCGGGGTT-AGGAGTATCCC
70616 CTTGGAAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
47 30 0.75
49 10 0.25
ACGTcount: A:0.32, C:0.11, G:0.27, T:0.30
Consensus pattern (48 bp):
GAAAATCGGTGTTTTGGAAATAAAACCGGGGTTAGGAGTATCCCTTTA
Found at i:70736 original size:79 final size:79
Alignment explanation
Indices: 70631--70784 Score: 195
Period size: 79 Copynumber: 1.9 Consensus size: 79
70621 AAATAGCGGA
* * * * * * *
70631 GTTGGAGTATCCCTGTTTGTGAAAAATTGGTGTTTTAAAAATAAAACCGGGGCT-AAAGTA-TCC
1 GTTGGAGTATCCCCGATTATGAAAAATCGATGTTTCAAAAATAAAACAGGGGCTGAAA-TATTCC
70694 CTTCAAAAATAACAAG
65 C-TCAAAAATAACAAG
* *
70710 GTTGGAGTATCCCCGATTATGGAAAATCGATGTTTCAAAAATAAAACAGGGGTTGAAATATTCCC
1 GTTGGAGTATCCCCGATTATGAAAAATCGATGTTTCAAAAATAAAACAGGGGCTGAAATATTCCC
70775 TCAAAAATAA
66 TCAAAAATAA
70785 AAACATAAAT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
79 57 0.89
80 7 0.11
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.28
Consensus pattern (79 bp):
GTTGGAGTATCCCCGATTATGAAAAATCGATGTTTCAAAAATAAAACAGGGGCTGAAATATTCCC
TCAAAAATAACAAG
Found at i:73206 original size:20 final size:20
Alignment explanation
Indices: 73181--73236 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
73171 GGTAAAACCC
73181 AGAATGTATCGATACAATGA
1 AGAATGTATCGATACAATGA
*
73201 AGAATGTATCGATATAATGA
1 AGAATGTATCGATACAATGA
*
73221 AAAATGTATCGATACA
1 AGAATGTATCGATACA
73237 TATTATGGAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.46, C:0.09, G:0.18, T:0.27
Consensus pattern (20 bp):
AGAATGTATCGATACAATGA
Found at i:73893 original size:61 final size:61
Alignment explanation
Indices: 73797--74542 Score: 848
Period size: 61 Copynumber: 12.1 Consensus size: 61
73787 TGGGGACTAG
* * * * *
73797 AAGGTGCCACCGAC-T-TGTGGGCTTTGAAAGGAAAAGGCGTCTTGCTTTTTGAGGACTGA
1 AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGA
* * * * * * *
73856 AAGTTGCCACCAACTCGTGCGGGCTTTAAAAGGAAAAGGCGTCCTACTCTTTGAGAACTAA
1 AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGA
* ** * *
73917 AAGGTGGCACCAACTCATGCGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGATGACTGA
1 AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGA
* * * *
73978 AAGGTGGCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCCTCTTGCTCTTTGAGGATTGA
1 AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGA
* * * * *
74039 AAGGTGCCGCCAACTTGTGTGGGCTATAAAAGGAAAAGACGTCCTACTCTTTGAGGACTGA
1 AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGA
* *
74100 AAGGTGCCATCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGTTCTTTGAGGACTGA
1 AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGA
* * *
74161 AAGGTGCCACAAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCTTGCTTTTTGAGGACTGA
1 AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGA
* *
74222 AAGTTGCCACCAACTTGGTGTGGGCTTTAAAAGGATTAAAAGGAGAAGGCATCCTACTCTTTGAG
1 AAGGTGCCACCAACTT-GTGTGGGCTTTAAAAGG------A--A-AAGGCATCCTGCTCTTTGAG
*
74287 GACTAA
56 GACTGA
** ** * * * *
74293 AAGGTGCCACCAACTCATGCAGGCTTTAAAAGGAAAAGACATCCTACTCTTTGAAGATTGA
1 AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGA
* * * *
74354 AAGGTGCCACCAATTTGTGTGGGCTTTAAAAGGAGAAGACATCCTGCTCTTTGAGGACTAA
1 AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGA
* * * * * * ** * *
74415 AAGGTGCCACCAACTTGTTTAGACTTTAACAGAAAAAAAGTGTCCTACTCTTTGAGGACTAA
1 AAGGTGCCACCAACTTGTGTGGGCTTTAAAAG-GAAAAGGCATCCTGCTCTTTGAGGACTGA
* * *
74477 AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGACATCCTACTCTTTGAGCACTGA
1 AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGA
74538 AAGGT
1 AAGGT
74543 TAAAAGGTTT
Statistics
Matches: 581, Mismatches: 93, Indels: 24
0.83 0.13 0.03
Matches are distributed among these distances:
59 12 0.02
61 448 0.77
62 68 0.12
64 1 0.00
68 1 0.00
70 15 0.03
71 36 0.06
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (61 bp):
AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGA
Found at i:74126 original size:183 final size:183
Alignment explanation
Indices: 73797--74542 Score: 942
Period size: 183 Copynumber: 4.0 Consensus size: 183
73787 TGGGGACTAG
* * * * *
73797 AAGGTGCCACCGAC-T-TGTGGGCTTTGAAAGGAAAAGGCGTCTTGCTTTTTGAGGACTGAAAGT
1 AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCTTGCTCTTTGAGGACTGAAAGG
* * * *
73860 TGCCACCAACTCGTGCGGGCTTTAAAAGGAAAAG-GCGTCCTACTCTTTGAGAACTAAAAGGTGG
66 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGAGCGTCCTACTCTTTGAGGACTAAAAGGTGC
* *
73924 CACCAACTCATGCGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGATGACTGA
131 CACCAACTCATGCGGGCTTTAAAAGGAAAAGACATCCTACTCTTTGA-GACTGA
* * *
73978 AAGGTGGCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCCTCTTGCTCTTTGAGGATTGAAAGG
1 AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCTTGCTCTTTGAGGACTGAAAGG
* * *
74043 TGCCGCCAACTTGTGTGGGCTATAAAAGGAAAAGA-CGTCCTACTCTTTGAGGACTGAAAGGTGC
66 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGAGCGTCCTACTCTTTGAGGACTAAAAGGTGC
* ** * * **
74107 CATCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGTTCTTTGAGGACTGA
131 CACCAACTCATGCGGGCTTTAAAAGGAAAAGACATCCTACTCTTTGA-GACTGA
* * *
74161 AAGGTGCCACAAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCTTGCTTTTTGAGGACTGAAAGT
1 AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCTTGCTCTTTGAGGACTGAAAGG
*
74226 TGCCACCAACTTGGTGTGGGCTTTAAAAGGATTAAAAGGAGAAGGCATCCTACTCTTTGAGGACT
66 TGCCACCAACTT-GTGTGGGCTTTAAAAGG----AAA--AG-A-GCGTCCTACTCTTTGAGGACT
* *
74291 AAAAGGTGCCACCAACTCATGCAGGCTTTAAAAGGAAAAGACATCCTACTCTTTGAAGATTGA
122 AAAAGGTGCCACCAACTCATGCGGGCTTTAAAAGGAAAAGACATCCTACTCTTTG-AGACTGA
* * * * *
74354 AAGGTGCCACCAATTTGTGTGGGCTTTAAAAGGAGAAGACATCCTGCTCTTTGAGGACTAAAAGG
1 AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCTTGCTCTTTGAGGACTGAAAGG
* * * * * * *
74419 TGCCACCAACTTGTTTAGACTTTAACAGAAAAAAAGTGTCCTACTCTTTGAGGACTAAAAGGTGC
66 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGAGCGTCCTACTCTTTGAGGACTAAAAGGTGC
** *
74484 CACCAACTTGTGTGGGCTTTAAAAGGAAAAGACATCCTACTCTTTGAGCACTGA
131 CACCAACTCATGCGGGCTTTAAAAGGAAAAGACATCCTACTCTTTGAG-ACTGA
74538 AAGGT
1 AAGGT
74543 TAAAAGGTTT
Statistics
Matches: 490, Mismatches: 60, Indels: 27
0.85 0.10 0.05
Matches are distributed among these distances:
181 12 0.02
182 1 0.00
183 219 0.45
184 95 0.19
185 1 0.00
186 1 0.00
188 6 0.01
190 2 0.00
191 1 0.00
192 12 0.02
193 139 0.28
194 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (183 bp):
AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCTTGCTCTTTGAGGACTGAAAGG
TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGAGCGTCCTACTCTTTGAGGACTAAAAGGTGC
CACCAACTCATGCGGGCTTTAAAAGGAAAAGACATCCTACTCTTTGAGACTGA
Found at i:74362 original size:132 final size:131
Alignment explanation
Indices: 74125--74510 Score: 457
Period size: 132 Copynumber: 3.0 Consensus size: 131
74115 TGTGTGGGCT
* * * * *
74125 TTAAAAGGAAAAGGCATCCTGTTCTTTGAGGACTGAAAGGTGCCACAAACTTGTGTGGGCTTTAA
1 TTAAAAGGAGAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTAGGCTTTAA
* * * * *
74190 AAGGAAAAGGCATCTTGCTTTTTGAGGACTGAAAGTTGCCACCAACTTGGTGTGGGCTTTAAAAG
66 AAGGAAAAGACATCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTT-GTGTGGGCTTTAAAAG
74255 GA
130 GA
* ** *
74257 TTAAAAGGAGAAGGCATCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTCATGCAGGCTTTAA
1 TTAAAAGGAGAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTAGGCTTTAA
* * *
74322 AAGGAAAAGACATCCTACTCTTTGAAGATTGAAAGGTGCCACCAATTTGTGTGGGC--T------
66 AAGGAAAAGACATCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG
74379 -
131 A
* * *
74379 TTAAAAGGAGAAGACATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTTTAGACTTTAA
1 TTAAAAGGAGAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTAGGCTTTAA
* * * ** *
74444 CAGAAAAAAAGTGTCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAG
66 AAGGAAAAGA-CATCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAG
74509 GA
130 GA
74511 AAAGACATCC
Statistics
Matches: 211, Mismatches: 33, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
122 65 0.31
123 40 0.19
125 1 0.00
129 1 0.00
131 8 0.04
132 96 0.45
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (131 bp):
TTAAAAGGAGAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTAGGCTTTAA
AAGGAAAAGACATCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG
A
Found at i:75519 original size:16 final size:15
Alignment explanation
Indices: 75489--75527 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
75479 AAGCAGGTTC
75489 TTTTC-TTTTCTCTT
1 TTTTCTTTTTCTCTT
75503 TTTTCTTTTTCCTCTT
1 TTTTCTTTTT-CTCTT
*
75519 TTTTATTTT
1 TTTTCTTTT
75528 ATTTTTGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 5 0.23
15 4 0.18
16 13 0.59
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTCTTTTTCTCTT
Found at i:75540 original size:13 final size:13
Alignment explanation
Indices: 75524--75553 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
75514 CTCTTTTTTA
*
75524 TTTTATTTTTGTT
1 TTTTATTTTTATT
75537 TTTTATTTTTATT
1 TTTTATTTTTATT
75550 TTTT
1 TTTT
75554 GAAAAATGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.10, C:0.00, G:0.03, T:0.87
Consensus pattern (13 bp):
TTTTATTTTTATT
Found at i:75546 original size:19 final size:18
Alignment explanation
Indices: 75517--75552 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
75507 CTTTTTCCTC
75517 TTTTTTATTTTATTTTTG
1 TTTTTTATTTTATTTTTG
75535 TTTTTTATTTTTATTTTT
1 TTTTTTA-TTTTATTTTT
75553 TGAAAAATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.11, C:0.00, G:0.03, T:0.86
Consensus pattern (18 bp):
TTTTTTATTTTATTTTTG
Found at i:82340 original size:29 final size:30
Alignment explanation
Indices: 82280--82344 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
82270 AAAATATTGA
**
82280 ATTTTTCACCATCAGGGATACTCCAACCCC
1 ATTTTTCACCATCAGAAATACTCCAACCCC
*
82310 ATTTTTCACCATCAGAAATACTCTAA-CCC
1 ATTTTTCACCATCAGAAATACTCCAACCCC
82339 ATTTTT
1 ATTTTT
82345 ACTTCAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
29 9 0.28
30 23 0.72
ACGTcount: A:0.29, C:0.31, G:0.06, T:0.34
Consensus pattern (30 bp):
ATTTTTCACCATCAGAAATACTCCAACCCC
Found at i:82396 original size:81 final size:82
Alignment explanation
Indices: 82178--82388 Score: 254
Period size: 80 Copynumber: 2.6 Consensus size: 82
82168 AAATTTTTAA
* * * * * *
82178 ATTTTTACTTCCAAAATATCGAATTTTTCACCATCGGGGATAATTCAACCCCATCATTT---C-T
1 ATTTTTACTTCAAAAATATTGAATTTTTCACCATCAGGGATACTCCAACCCCAT-TTTTCACCAT
* *
82239 GAAAAGATACTCAAACTCC
65 CAGAA-ATACTCAAACTCC
82258 ATTTTTACTTCAAAAATATTGAATTTTTCACCATCAGGGATACTCCAACCCCATTTTTCACCATC
1 ATTTTTACTTCAAAAATATTGAATTTTTCACCATCAGGGATACTCCAACCCCATTTTTCACCATC
*
82323 AGAAATACTCTAAC-CC
66 AGAAATACTCAAACTCC
* *
82339 ATTTTTACTTCAAAAATTTTGAATTTTTCACCAT-TGGGAATACTCCAACC
1 ATTTTTACTTCAAAAATATTGAATTTTTCACCATCAGGG-ATACTCCAACC
82389 TCGTTTTTAC
Statistics
Matches: 115, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
79 3 0.03
80 52 0.45
81 46 0.40
82 10 0.09
83 4 0.03
ACGTcount: A:0.33, C:0.25, G:0.08, T:0.35
Consensus pattern (82 bp):
ATTTTTACTTCAAAAATATTGAATTTTTCACCATCAGGGATACTCCAACCCCATTTTTCACCATC
AGAAATACTCAAACTCC
Found at i:82418 original size:52 final size:51
Alignment explanation
Indices: 82310--82438 Score: 132
Period size: 51 Copynumber: 2.5 Consensus size: 51
82300 CTCCAACCCC
* * * * **
82310 ATTTTTCACCATCAGAAATACTCTAACCCATTTTTACTTCAAAAATTTTGA
1 ATTTTTCACCATCGGGAATACTCCAACCCATTTTTACTTCAAAAATATCAA
* * **
82361 ATTTTTCACCATTGGGAATACTCCAACCTCGTTTTTACTTCAAGCATATCAA
1 ATTTTTCACCATCGGGAATACTCCAACC-CATTTTTACTTCAAAAATATCAA
* *
82413 ATTTTTTCACTATCGGGGATACTCCA
1 A-TTTTTCACCATCGGGAATACTCCA
82439 CCCCCATCAT
Statistics
Matches: 63, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
51 24 0.38
52 18 0.29
53 21 0.33
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (51 bp):
ATTTTTCACCATCGGGAATACTCCAACCCATTTTTACTTCAAAAATATCAA
Found at i:82466 original size:81 final size:81
Alignment explanation
Indices: 82378--82788 Score: 345
Period size: 81 Copynumber: 5.1 Consensus size: 81
82368 ACCATTGGGA
* * * *
82378 ATACTCCAACCTCGTTTTTACTT-CAAGCATATCAAATTTTTTCACTATCGGGGATACTCCACCC
1 ATACTCCAACCCCGTTTTTACTTCCAAGAATATCAAA-TTTTTCACCATCGGGGATACTCCAACC
* *
82442 CCATCATTTCTGAGGGG
65 CCATCATTTCTGAAGAG
* * * * * * *
82459 ATACTCCAACCCTGTTTTTACTT-CAAAAATATCAAAATTTTCACCATCGAGGAAACTCTAACCT
1 ATACTCCAACCCCGTTTTTACTTCCAAGAATATCAAATTTTTCACCATCGGGGATACTCCAACCC
** *
82523 CATCATTTCCAAAAAG
66 CATCATTTCTGAAGAG
* * * *
82539 ATACTCTAACCCCATTTTTACTTCCAA-AAGCATCAAATTTTTCACCATCGGGGATAGTCCAACC
1 ATACTCCAACCCCGTTTTTACTTCCAAGAA-TATCAAATTTTTCACCATCGGGGATACTCCAACC
* *
82603 CTATCATCTCTGAAGAG
65 CCATCATTTCTGAAGAG
*** * * *
82620 ATACTCCAACCCCGTTTTTACTTCCAA-AAT-TTTGATTTTTCACTATTGGGGATACTCTAACCC
1 ATACTCCAACCCCGTTTTTACTTCCAAGAATATCAAATTTTTCACCATCGGGGATACTCCAACCC
* *
82683 CATCATTTCTGAGGCG
66 CATCATTTCTGAAGAG
* ** * * ** * * *
82699 ATACTCTAACCCTATTTCTATTTCCAA-AATAT-TGATTTTTCATC-TCGAGGATACTCTAACCC
1 ATACTCCAACCCCGTTTTTACTTCCAAGAATATCAAATTTTTCACCATCGGGGATACTCCAACCC
* * *
82761 TATCATCTTC-GAGGGG
66 CATCAT-TTCTGAAGAG
82777 ATACTCCAACCC
1 ATACTCCAACCC
82789 TAATTTTCAC
Statistics
Matches: 269, Mismatches: 57, Indels: 11
0.80 0.17 0.03
Matches are distributed among these distances:
78 37 0.14
79 76 0.28
80 55 0.20
81 101 0.38
ACGTcount: A:0.29, C:0.27, G:0.11, T:0.33
Consensus pattern (81 bp):
ATACTCCAACCCCGTTTTTACTTCCAAGAATATCAAATTTTTCACCATCGGGGATACTCCAACCC
CATCATTTCTGAAGAG
Found at i:82580 original size:214 final size:211
Alignment explanation
Indices: 82179--82602 Score: 480
Period size: 214 Copynumber: 2.0 Consensus size: 211
82169 AATTTTTAAA
* *
82179 TTTTTACTTCCAAAATATCGAATTTTTCACCATCGGGGATAATTCAACCCCATCATTTCTGAAAA
1 TTTTTACTTCCAAAATATCAAATTTTTCACCATCGGGGATAATCCAACCCCATCATTTCTGAAAA
** * *
82244 GATACTCAAACTCCATTTTTACTTCAAAAATATTGAATTTTTCACCATCAGGGATACTCCAACCC
66 GATACTCAAACTCCATTTTTACTTCAAAAATATCAAAATTTTCACCATCAGGGAAACTCCAACCC
* * ** ** *
82309 CATTTTTCACCATCAGAAATACTCTAACCCATTTTTACTTCAAAAATTTTGAATTTTTCACCATT
131 CATATTT-ACCA-CAAAAATACTCTAACCCATTTTTACTTCAAAAACATCAAATTTTTCACCATC
82374 GGGAATACTCCAACCTCG
194 GGGAATACTCCAACCTCG
* * * * *
82392 TTTTTACTT-CAAGCATATCAAATTTTTTCACTATCGGGGATACTCCACCCCCATCATTTCTGAG
1 TTTTTACTTCCAA-AATATCAAA-TTTTTCACCATCGGGGATAATCCAACCCCATCATTTCTGAA
** * * *
82456 GGGATACTCCAAC-CCTGTTTTTACTTCAAAAATATCAAAATTTTCACCATC-GAGGAAACTCTA
64 AAGATACTCAAACTCC-ATTTTTACTTCAAAAATATCAAAATTTTCACCATCAG-GGAAACTCCA
* *
82519 ACCTCATCATTT-CCA-AAAAGATACTCTAACCCCATTTTTACTTCCAAAAGCATCAAATTTTTC
127 ACCCCAT-ATTTACCACAAAA-ATACTCTAA-CCCATTTTTACTT-CAAAAACATCAAATTTTTC
* *
82582 ACCATCGGGGATAGTCCAACC
188 ACCATCGGGAATACTCCAACC
82603 CTATCATCTC
Statistics
Matches: 176, Mismatches: 27, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
211 3 0.02
212 12 0.07
213 35 0.20
214 123 0.70
215 3 0.02
ACGTcount: A:0.32, C:0.26, G:0.09, T:0.33
Consensus pattern (211 bp):
TTTTTACTTCCAAAATATCAAATTTTTCACCATCGGGGATAATCCAACCCCATCATTTCTGAAAA
GATACTCAAACTCCATTTTTACTTCAAAAATATCAAAATTTTCACCATCAGGGAAACTCCAACCC
CATATTTACCACAAAAATACTCTAACCCATTTTTACTTCAAAAACATCAAATTTTTCACCATCGG
GAATACTCCAACCTCG
Found at i:82774 original size:26 final size:26
Alignment explanation
Indices: 82738--82790 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 26
82728 TATTGATTTT
*
82738 TCATCTCGA-GGATACTCTAACCCTA
1 TCATCTCGAGGGATACTCCAACCCTA
82763 TCATCTTCGAGGGGATACTCCAACCCTA
1 TCATC-TCGA-GGGATACTCCAACCCTA
82791 ATTTTCACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 5 0.21
26 4 0.17
28 15 0.62
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.26
Consensus pattern (26 bp):
TCATCTCGAGGGATACTCCAACCCTA
Found at i:88221 original size:20 final size:20
Alignment explanation
Indices: 88196--88262 Score: 67
Period size: 20 Copynumber: 3.7 Consensus size: 20
88186 CTACCACTGT
88196 TTGTATCGATACATAGGATA
1 TTGTATCGATACATAGGATA
*
88216 TTG--T--ATAGAT---ATA
1 TTGTATCGATACATAGGATA
88229 TTGTATCGATACATAGGATA
1 TTGTATCGATACATAGGATA
*
88249 TTGTATAGATACAT
1 TTGTATCGATACAT
88263 TGTATCGATA
Statistics
Matches: 37, Mismatches: 3, Indels: 14
0.69 0.06 0.26
Matches are distributed among these distances:
13 6 0.16
15 1 0.03
16 5 0.14
17 5 0.14
18 1 0.03
20 19 0.51
ACGTcount: A:0.36, C:0.07, G:0.18, T:0.39
Consensus pattern (20 bp):
TTGTATCGATACATAGGATA
Found at i:88238 original size:33 final size:33
Alignment explanation
Indices: 88196--88275 Score: 151
Period size: 33 Copynumber: 2.4 Consensus size: 33
88186 CTACCACTGT
*
88196 TTGTATCGATACATAGGATATTGTATAGATATA
1 TTGTATCGATACATAGGATATTGTATAGATACA
88229 TTGTATCGATACATAGGATATTGTATAGATACA
1 TTGTATCGATACATAGGATATTGTATAGATACA
88262 TTGTATCGATACAT
1 TTGTATCGATACAT
88276 TGCTTATAAC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (33 bp):
TTGTATCGATACATAGGATATTGTATAGATACA
Found at i:88266 original size:13 final size:13
Alignment explanation
Indices: 88248--88277 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
88238 TACATAGGAT
88248 ATTGTATAGATAC
1 ATTGTATAGATAC
*
88261 ATTGTATCGATAC
1 ATTGTATAGATAC
88274 ATTG
1 ATTG
88278 CTTATAACGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (13 bp):
ATTGTATAGATAC
Found at i:90513 original size:21 final size:19
Alignment explanation
Indices: 90489--90530 Score: 57
Period size: 21 Copynumber: 2.1 Consensus size: 19
90479 TATTAAAAAG
*
90489 TTAGCTAATGAAAATAATGAA
1 TTAGCTAA-GAAAACAA-GAA
90510 TTAGCTAAGAAAACAAGAA
1 TTAGCTAAGAAAACAAGAA
90529 TT
1 TT
90531 TGCATGATTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 5 0.25
20 7 0.35
21 8 0.40
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.26
Consensus pattern (19 bp):
TTAGCTAAGAAAACAAGAA
Found at i:94406 original size:13 final size:13
Alignment explanation
Indices: 94388--94413 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
94378 ACATTAAAGC
94388 ATGTATCGATACA
1 ATGTATCGATACA
94401 ATGTATCGATACA
1 ATGTATCGATACA
94414 TGGGTTACTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:96315 original size:22 final size:22
Alignment explanation
Indices: 96290--96332 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
96280 AATTTTTTGA
96290 TTTGACAAAGGGGGAGAAATAC
1 TTTGACAAAGGGGGAGAAATAC
*
96312 TTTGATAAAGGGGGAGAAATA
1 TTTGACAAAGGGGGAGAAATA
96333 TGTTTATCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.42, C:0.05, G:0.33, T:0.21
Consensus pattern (22 bp):
TTTGACAAAGGGGGAGAAATAC
Found at i:96970 original size:20 final size:19
Alignment explanation
Indices: 96927--96980 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 19
96917 ACATTATGCT
**
96927 TTGTATCGATACATGTTCA
1 TTGTATCGATACATGGACA
*
96946 TTGTATCGATTCATGGACAA
1 TTGTATCGATACATGGAC-A
96966 TTGTATCGATACATG
1 TTGTATCGATACATG
96981 AAACTGACAG
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.39
Consensus pattern (19 bp):
TTGTATCGATACATGGACA
Found at i:98885 original size:31 final size:31
Alignment explanation
Indices: 98837--98938 Score: 107
Period size: 31 Copynumber: 3.3 Consensus size: 31
98827 ATCCTCCAAA
* *
98837 CCTTTTTCCAAAAGTCCATAACTTCGTGGCAC
1 CCTTTTT-CTAAAGTCCAAAACTTCGTGGCAC
* *
98869 CCTTTTTCTAAAGTCCAAAACTCCATGGCAC
1 CCTTTTTCTAAAGTCCAAAACTTCGTGGCAC
* ** *
98900 CCTTTCTT-TAAAGTCTACGACTTTGTGGCAC
1 CCTTT-TTCTAAAGTCCAAAACTTCGTGGCAC
98931 CCTTTTTC
1 CCTTTTTC
98939 AAATGCCATT
Statistics
Matches: 58, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
30 2 0.03
31 47 0.81
32 9 0.16
ACGTcount: A:0.23, C:0.30, G:0.12, T:0.35
Consensus pattern (31 bp):
CCTTTTTCTAAAGTCCAAAACTTCGTGGCAC
Found at i:99121 original size:66 final size:66
Alignment explanation
Indices: 98947--99717 Score: 828
Period size: 66 Copynumber: 11.8 Consensus size: 66
98937 TCAAATGCCA
* * * *
98947 TTCCTTTTAAAGCCCACACAGGTTGGTAGCACCTTTTAGTCCTCAAAGAGCATGATG-CTTTTCT
1 TTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTCCT
99011 T
66 T
* *** * *
99012 TTTCTTTTAAAGCCCACACAA---GGTGGCTTTTTTTAGTCATCAAAGAGCAGGATGCCTTTCCC
1 TTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTCCT
99074 T
66 T
* * * * **
99075 TTCATTTTAAAGCCTACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAAGATGCCTTTTGT
1 TTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTCCT
99140 T
66 T
* * * * **
99141 TTCCTCTTAAAGCCCACACAAGTTGGTGACACCTTTTAGTCCTCAAAGAGTAAGATGCCTTTTGT
1 TTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTCCT
99206 T
66 T
* * * * * * * * * *
99207 TTCCTCTTGAATCCCACACAAGTTAGTGACATCTTTTAGTCCTTAAAGAGTAAGATGCCTTTTCT
1 TTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTCCT
99272 T
66 T
* * ** *
99273 TTCCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAAGACACCTTTCCC
1 TTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTCCT
99338 T
66 T
* * * * *
99339 TTCCTTTTAAAACCCACACAAGTTGATGGCACTTTTTAGTTCTCAAAGAGTAGGA-GCCTTTCCT
1 TTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTCCT
99403 T
66 T
* * * * * *
99404 TTCCTCTTAAAGCCCACACAGGTTGGTGGCACCTTTAAGTCCTTAAAAAGCAGGACGCCTTT-CT
1 TTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTCCT
99468 T
66 T
** * * * *
99469 TTTTTTTTAAAGCCCACAGAAGTTGGTGGTACCTTTTAGTCCTCAAAGAGTAGGATGTCTTTCCT
1 TTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTCCT
99534 T
66 T
* * * * *
99535 TTCCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTTAAAGAGCAAGACG-CTTTTCT
1 TTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTCCT
99599 T
66 T
* * * * * *
99600 CTT-CTTTTAAAGCCCACACAAGCTGGTGGGACATTTTAGTCCTTAAAGAGTAGGAAGCCTTTTC
1 -TTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCC-TTTC
99664 C--
64 CTT
* * *
99665 TT--TTTAAAAGCTCACACAAGCTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
1 TTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
99718 CACGTTTTTC
Statistics
Matches: 599, Mismatches: 98, Indels: 20
0.84 0.14 0.03
Matches are distributed among these distances:
62 27 0.05
63 69 0.12
64 2 0.00
65 179 0.30
66 318 0.53
67 4 0.01
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.33
Consensus pattern (66 bp):
TTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTCCT
T
Found at i:99229 original size:132 final size:132
Alignment explanation
Indices: 98947--99904 Score: 943
Period size: 132 Copynumber: 7.3 Consensus size: 132
98937 TCAAATGCCA
* * * *
98947 TTCCTTTTAAAGCCCACACAGGTTGGTAGCACCTTTTAGTCCTCAAAGAGCATGATG-CTTTTCT
1 TTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGATGCCTTTTCT
* * *** * * * *
99011 TTTTCTTTTAAAGCCCACACAA---GGTGGCTTTTTTTAGTCATCAAAGAGCAGGATGCCTTTCC
66 TTTCCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAAGACGCCTTTTC
*
99073 CT
131 TT
* * * *
99075 TTCATTTTAAAGCCTACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAAGATGCCTTTTGT
1 TTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGATGCCTTTTCT
* * * *
99140 TTTCCTCTTAAAGCCCACACAAGTTGGTGACACCTTTTAGTCCTCAAAGAGTAAGATGCCTTTTG
66 TTTCCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAAGACGCCTTTTC
99205 TT
131 TT
* * * * * * * *
99207 TTCCTCTTGAATCCCACACAAGTTAGTGACATCTTTTAGTCCTTAAAGAGTAAGATGCCTTTTCT
1 TTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGATGCCTTTTCT
* *
99272 TTTCCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAAGACACCTTTCC
66 TTTCCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAAGACGCCTTTTC
*
99337 CT
131 TT
* * * * *
99339 TTCCTTTTAAAACCCACACAAGTTGATGGCACTTTTTAGTTCTCAAAGAGTAGGA-GCCTTTCCT
1 TTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGATGCCTTTTCT
* * * * *
99403 TTTCCTCTTAAAGCCCACACAGGTTGGTGGCACCTTTAAGTCCTTAAAAAGCAGGACGCC-TTTC
66 TTTCCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAAGACGCCTTTTC
99467 TT
131 TT
** * * * *
99469 TTTTTTTTAAAGCCCACAGAAGTTGGTGGTACCTTTTAGTCCTCAAAGAGTAGGATGTCTTTCCT
1 TTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGATGCCTTTTCT
*
99534 TTTCCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTTAAAGAGCAAGACG-CTTTTC
66 TTTCCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAAGACGCCTTTTC
99598 TT
131 TT
* * * * *
99600 CTT-CTTTTAAAGCCCACACAAGCTGGTGGGACATTTTAGTCCTTAAAGAGTAGGAAGCCTTTTC
1 -TTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGATGCCTTTTC
* * * * *
99664 CTTT--T-TAAAAGCTCACACAAGCTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACACGTTTT
65 TTTTCCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCA--AGACG----
99726 TCTCTTTTTCTCT
124 -C-C-TTTTCT-T
* * * *
99739 TTCTCTTTTTAAAAGCCCACATAAGTTGGTGTCATTCTTTTTTAGTCCTCAAAGAGCAGGACT-C
1 TTC-C-TTTT-AAAGCCCACACAAGTTGGTGGCA--C-CTTTTAGTCCTCAAAGAGTAGGA-TGC
* *
99803 TTTTTC-TTT-CTC--AAAGCCCACACAAGTTGGTGGCATTCCTTTTTAGTCCTTAAAGAGCAAG
59 CTTTTCTTTTCCTCTTAAAGCCCACACAAGTTGGTGGCA--CC-TTTTAGTCCTCAAAGAGCAAG
*
99864 A-----TTGCTT
121 ACGCCTTTTCTT
* *
99871 TT-CTTCTCAAAGCCCACATAAGTTGGTGGCACCT
1 TTCCTT-TTAAAGCCCACACAAGTTGGTGGCACCT
99905 ATCTACTTCA
Statistics
Matches: 697, Mismatches: 101, Indels: 66
0.81 0.12 0.08
Matches are distributed among these distances:
126 1 0.00
127 1 0.00
128 93 0.13
129 51 0.07
130 58 0.08
131 185 0.27
132 196 0.28
133 4 0.01
137 1 0.00
138 8 0.01
139 1 0.00
140 1 0.00
141 4 0.01
142 19 0.03
144 25 0.04
145 29 0.04
146 2 0.00
147 18 0.03
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (132 bp):
TTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGATGCCTTTTCT
TTTCCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAAGACGCCTTTTC
TT
Found at i:99840 original size:65 final size:65
Alignment explanation
Indices: 99735--99901 Score: 230
Period size: 65 Copynumber: 2.6 Consensus size: 65
99725 TTCTCTTTTT
* * * * * *
99735 CTCTTTCTCTTTTTAAAAGCCCACATAAGTTGGTGTCATTCTTTTTTAGTCCTCAAAGAGCAGGA
1 CTCTTTTTCTTTCTCAAAGCCCACATAAGTTGGTGGCATTCCTTTTTAGTCCTCAAAGAGCAAGA
* *
99800 CTCTTTTTCTTTCTCAAAGCCCACACAAGTTGGTGGCATTCCTTTTTAGTCCTTAAAGAGCAAGA
1 CTCTTTTTCTTTCTCAAAGCCCACATAAGTTGGTGGCATTCCTTTTTAGTCCTCAAAGAGCAAGA
*
99865 TTGC-TTTTC-TTCTCAAAGCCCACATAAGTTGGTGGCA
1 CT-CTTTTTCTTTCTCAAAGCCCACATAAGTTGGTGGCA
99902 CCTATCTACT
Statistics
Matches: 91, Mismatches: 10, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
64 27 0.30
65 63 0.69
66 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (65 bp):
CTCTTTTTCTTTCTCAAAGCCCACATAAGTTGGTGGCATTCCTTTTTAGTCCTCAAAGAGCAAGA
Found at i:100400 original size:21 final size:20
Alignment explanation
Indices: 100374--100417 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
100364 TACAATTTGC
*
100374 ATCGATTCAAATAGTGAATGT
1 ATCGATACAAA-AGTGAATGT
*
100395 ATCGATACATAAGTGAATGT
1 ATCGATACAAAAGTGAATGT
100415 ATC
1 ATC
100418 AATGCATGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (20 bp):
ATCGATACAAAAGTGAATGT
Found at i:103050 original size:80 final size:80
Alignment explanation
Indices: 102956--103306 Score: 424
Period size: 80 Copynumber: 4.4 Consensus size: 80
102946 TTCTACGTCC
* * * * *
102956 AAAATATCAAATTTTTCACCATTGGGGATACACCAACCCTATCATTTATGAGGGGATCCTCCAAC
1 AAAATATCAAATTTTTCACCATCGGGGATACTCCAACCCCATCATTTCTGAGGGGATACTCCAAC
* *
103021 CCTGTTTTTTCTTCA
66 CCTATTTTTACTTCA
* * *
103036 AAAATATCGAATTTTTCACCATCGAGGATACTCCAGCCCCATCATTTCTGAGGGGATACTCCAAC
1 AAAATATCAAATTTTTCACCATCGGGGATACTCCAACCCCATCATTTCTGAGGGGATACTCCAAC
103101 CCTATTTTTACTTCA
66 CCTATTTTTACTTCA
* * *
103116 AAAA-ATCAAAATTTTCACCATCAGGGATACTCCAACCCCATCATTTCCT-A-GGGATACTCTAA
1 AAAATATCAAATTTTTCACCATCGGGGATACTCCAACCCCATCATTT-CTGAGGGGATACTCCAA
*
103178 -CCTGGTTTTTACTTCA
65 CCCT-ATTTTTACTTCA
* * * * * *
103194 AAAATATCAAATTTTTTCTCCATCGAGGATACTCCAACCCTATCATTTGC-AAAGGGATACTGCA
1 AAAATATCAAA-TTTTTCACCATCGGGGATACTCCAACCCCATCATTT-CTGAGGGGATACTCCA
* *
103258 ACCCCATTTTTTCTTCA
64 ACCCTATTTTTACTTCA
*
103275 AAAATATCAAAATTTTCACCATCGGGGATACT
1 AAAATATCAAATTTTTCACCATCGGGGATACT
103307 GTAACCTCAT
Statistics
Matches: 233, Mismatches: 31, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
77 3 0.01
78 26 0.11
79 44 0.19
80 127 0.55
81 31 0.13
82 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.32
Consensus pattern (80 bp):
AAAATATCAAATTTTTCACCATCGGGGATACTCCAACCCCATCATTTCTGAGGGGATACTCCAAC
CCTATTTTTACTTCA
Found at i:103251 original size:159 final size:159
Alignment explanation
Indices: 102955--103306 Score: 460
Period size: 159 Copynumber: 2.2 Consensus size: 159
102945 TTTCTACGTC
* * * * * *
102955 CAAAATATCAAATTTTTCACCATTGGGGATACACCAACCCTATCATTTATGAGGGGATCCTCCAA
1 CAAAAAATCAAAATTTTCACCATCGGGGATACTCCAACCCCATCATTTATGAGGGGATACTCCAA
* * *
103020 CCCTGTTTTTTCTTCAAAAATATCGAATTTTTCACCATCGAGGATACTCCAGCCCCATCATTTCT
66 CCCTGTTTTTACTTCAAAAATATCAAATTTTTCACCATCGAGGATACTCCAACCCCATCATTTCT
* * *
103085 GAGGGGATACTCCAACCCTATTTTTACTT
131 AAAGGGATACTCCAACCCCATTTTTACTT
* * *
103114 CAAAAAATCAAAATTTTCACCATCAGGGATACTCCAACCCCATCATTTCCT-A-GGGATACTCTA
1 CAAAAAATCAAAATTTTCACCATCGGGGATACTCCAACCCCATCATTT-ATGAGGGGATACTCCA
* *
103177 A-CCTGGTTTTTACTTCAAAAATATCAAATTTTTTCTCCATCGAGGATACTCCAACCCTATCATT
65 ACCCT-GTTTTTACTTCAAAAATATCAAA-TTTTTCACCATCGAGGATACTCCAACCCCATCATT
* *
103241 TGC-AAAGGGATACTGCAACCCCATTTTTTCTT
128 T-CTAAAGGGATACTCCAACCCCATTTTTACTT
103273 CAAAAATATCAAAATTTTCACCATCGGGGATACT
1 CAAAAA-ATCAAAATTTTCACCATCGGGGATACT
103307 GTAACCTCAT
Statistics
Matches: 168, Mismatches: 20, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
157 3 0.02
158 31 0.18
159 106 0.63
160 28 0.17
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.32
Consensus pattern (159 bp):
CAAAAAATCAAAATTTTCACCATCGGGGATACTCCAACCCCATCATTTATGAGGGGATACTCCAA
CCCTGTTTTTACTTCAAAAATATCAAATTTTTCACCATCGAGGATACTCCAACCCCATCATTTCT
AAAGGGATACTCCAACCCCATTTTTACTT
Found at i:103320 original size:133 final size:133
Alignment explanation
Indices: 103165--103709 Score: 396
Period size: 133 Copynumber: 4.1 Consensus size: 133
103155 ATCATTTCCT
**
103165 AGGGATACTCTAACCTGGTTTTTACTTCAAAAATATCAAATTTTTTCTCCATCGAGGATACTCCA
1 AGGGATACTCTAACCTCATTTTTACTTCAAAAATATCAAATTTTTTCTCCATCGAGGATACTCCA
* *
103230 ACCCTATCATTTGCAAAGGGATACTGCAACCCCATTTTTTCTTCAAAAATATCAAAATTTTCACC
66 ACCCTATCATTTACAAAGGGATACTGCAACCCCATTTTTACTTCAAAAATATCAAAATTTTCACC
103295 ATC
131 ATC
* * * ** * * * **
103298 GGGGATACTGTAACCTCATTTTTACTTCGAAGAGCATCGAA-TTTTTCACCATTG-GGATACTTT
1 AGGGATACTCTAACCTCATTTTTACTTC-AAAAATATCAAATTTTTTCTCCATCGAGGATACTCC
* * * * ** * * *** * ** **
103361 AACCTCATTTTACTTCCAAAATCTTGATATTTC-A--CCATCGGGATAC-TC--CAACCTCATTA
65 AACC-C-TATCATTTAC-AAA--GGGATACTGCAACCCCAT--TTTTACTTCAAAAATATCAAAA
*
103420 -TTT--CCA-A
123 TTTTCACCATC
* * * * * *
103427 AGGGATACTCCAACCTTATTTTTACTTCAAAAATATCGAATTTTTTCGCCATCGGGGACACTCCA
1 AGGGATACTCTAACCTCATTTTTACTTCAAAAATATCAAATTTTTTCTCCATCGAGGATACTCCA
** * * *
103492 ACCCTATCATTTATGAAGGGATACTCCAACCTCGTTTTTACTTCAAAAATATCAAAATTTTCACC
66 ACCCTATCATTTACAAAGGGATACTGCAACCCCATTTTTACTTCAAAAATATCAAAATTTTCACC
103557 ATC
131 ATC
* * * * *
103560 AGGGACACTCTAACCCCGTTTTTACTTCAAAAATATCAATTTTTTTCT-CAACTGAGGATACTCC
1 AGGGATACTCTAACCTCATTTTTACTTCAAAAATATCAAATTTTTTCTCCATC-GAGGATACTCC
* * * * * *
103624 AACCCTATCATTTTCGAAGGGATACTGGAACCCCATTTTTACTTGAAAAAAAAACCAAAATTTTC
65 AACCCTATCATTTACAAAGGGATACTGCAACCCCATTTTTACTT--CAAAAATATCAAAATTTTC
*
103689 ACCATT
128 ACCATC
* *
103695 GGGGATACTCCAACC
1 AGGGATACTCTAACC
103710 CCATCATTTC
Statistics
Matches: 302, Mismatches: 87, Indels: 44
0.70 0.20 0.10
Matches are distributed among these distances:
125 6 0.02
126 4 0.01
127 4 0.01
128 16 0.05
129 42 0.14
130 16 0.05
132 20 0.07
133 129 0.43
134 18 0.06
135 38 0.13
136 3 0.01
137 6 0.02
ACGTcount: A:0.31, C:0.24, G:0.11, T:0.33
Consensus pattern (133 bp):
AGGGATACTCTAACCTCATTTTTACTTCAAAAATATCAAATTTTTTCTCCATCGAGGATACTCCA
ACCCTATCATTTACAAAGGGATACTGCAACCCCATTTTTACTTCAAAAATATCAAAATTTTCACC
ATC
Found at i:103414 original size:49 final size:51
Alignment explanation
Indices: 103288--103418 Score: 149
Period size: 49 Copynumber: 2.6 Consensus size: 51
103278 ATATCAAAAT
* * * *
103288 TTTCACCATCGGGGATACTGTAACCTCATTTTTACTTCGAAGAGCATCGAATT
1 TTTCACCATC-GGGATACTCTAACCTCA-TTTTACTTCCAAAAGCATCGAATA
* * * *
103341 TTTCACCATTGGGATACTTTAACCTCATTTTACTTCCAAAATC-TTG-ATA
1 TTTCACCATCGGGATACTCTAACCTCATTTTACTTCCAAAAGCATCGAATA
*
103390 TTTCACCATCGGGATACTCCAACCTCATT
1 TTTCACCATCGGGATACTCTAACCTCATT
103419 ATTTCCAAAG
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
49 28 0.41
50 2 0.03
51 13 0.19
52 16 0.24
53 9 0.13
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.36
Consensus pattern (51 bp):
TTTCACCATCGGGATACTCTAACCTCATTTTACTTCCAAAAGCATCGAATA
Found at i:103512 original size:81 final size:80
Alignment explanation
Indices: 103351--103575 Score: 233
Period size: 81 Copynumber: 2.8 Consensus size: 80
103341 TTTCACCATT
** * * ** * *
103351 GGGATACTTTAACCTCA-TTTTACTTCCAAAATCTTGATA-TTTCACCATC-GGGATACTCCAA-
1 GGGATACTCCAACCTCATTTTTACTTCAAAAATATCAAAATTTTCACCATCAGGGACACTCCAAC
* ***
103412 CCTCATTATTTCCAAA
66 CCT-ATCATTTATGAA
* ** * *
103428 GGGATACTCCAACCTTATTTTTACTTCAAAAATATCGAATTTTTTCGCCATCGGGGACACTCCAA
1 GGGATACTCCAACCTCATTTTTACTTCAAAAATATC-AAAATTTTCACCATCAGGGACACTCCAA
103493 CCCTATCATTTATGAA
65 CCCTATCATTTATGAA
* *
103509 GGGATACTCCAACCTCGTTTTTACTTCAAAAATATCAAAATTTTCACCATCAGGGACACTCTAAC
1 GGGATACTCCAACCTCATTTTTACTTCAAAAATATCAAAATTTTCACCATCAGGGACACTCCAAC
103574 CC
66 CC
103576 CGTTTTTACT
Statistics
Matches: 122, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
77 14 0.11
78 15 0.12
79 2 0.02
80 35 0.29
81 53 0.43
82 3 0.02
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.32
Consensus pattern (80 bp):
GGGATACTCCAACCTCATTTTTACTTCAAAAATATCAAAATTTTCACCATCAGGGACACTCCAAC
CCTATCATTTATGAA
Found at i:103790 original size:52 final size:51
Alignment explanation
Indices: 103726--103844 Score: 177
Period size: 52 Copynumber: 2.3 Consensus size: 51
103716 TTTCCAAGAG
*
103726 GATACTCTAACCCCATTTTTACTTCCAAAAGCATCGAATTTTTCACCATC-GC
1 GATACTCCAACCCCATTTTTACTTCCAAAAGC-TCG-ATTTTTCACCATCGGC
* * *
103778 GATACTCCAACCCCATTTTTACTTTCAAAATCTCGATTTTTCACCATCGGG
1 GATACTCCAACCCCATTTTTACTTCCAAAAGCTCGATTTTTCACCATCGGC
103829 GATACTCCAACCCCAT
1 GATACTCCAACCCCAT
103845 CATTTCCGAA
Statistics
Matches: 62, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
50 13 0.21
51 20 0.32
52 29 0.47
ACGTcount: A:0.28, C:0.32, G:0.08, T:0.32
Consensus pattern (51 bp):
GATACTCCAACCCCATTTTTACTTCCAAAAGCTCGATTTTTCACCATCGGC
Found at i:103799 original size:215 final size:210
Alignment explanation
Indices: 103299--103877 Score: 626
Period size: 215 Copynumber: 2.7 Consensus size: 210
103289 TTCACCATCG
* * * * *
103299 GGGATACTGTAACCTCATTTTTACTTCGAAGAGCATCGAATTTTTCACCATTGGGATACTTTAAC
1 GGGATACTCTAACCTCATTTTTACTTCCAAAAGCATCGAATTTTTCACCATCGGGATACTCTAAC
* * * * *
103364 CTCA-TTTTACTTCCAAAATCTTGATATTTCACCATCGGGATACTCCAA-CCTCATTATTTCCAA
66 CCCATTTTTACTT-CAAAATCTCGATTTTTCACCATCGGGATACTCCAACCCT-ATCATTTCCGA
** * * * * ** *
103427 AGGGATACTCCAACCTTATTTTTACTTCAAAAATATCGAATTTTTTCGCCATCGGGGACACTCCA
129 AGGGATACTCCAACCCCATTTTTACTTAAAAAAAAACCAAAATTTTCACCATCGGGGACACTCCA
* **
103492 ACCCTATCATTTATGAA
194 ACCCCATCATTTACCAA
* * ** * * *
103509 GGGATACTCCAACCTCGTTTTTACTT-CAAAAATATCAAAATTTTCACCATCAGGGACACTCTAA
1 GGGATACTCTAACCTCATTTTTACTTCCAAAAGCATCGAATTTTTCACCATC-GGGATACTCTAA
* * * ** * *
103573 CCCCGTTTTTACTTCAAAAATATCAATTTTTTTCTCAACTGAGGATACTCCAACCCTATCATTTT
65 CCCCATTTTTACTTC-AAAATCTCGATTTTTCAC-CATC-G-GGATACTCCAACCCTATCATTTC
** * *
103638 CGAAGGGATACTGGAACCCCATTTTTACTTGAAAAAAAAACCAAAATTTTCACCATTGGGGATAC
126 CGAAGGGATACTCCAACCCCATTTTTACTT-AAAAAAAAACCAAAATTTTCACCATCGGGGACAC
103703 TCCAACCCCATCATTT-CCAA
190 TCCAACCCCATCATTTACCAA
* * *
103723 GAGGATACTCTAACCCCATTTTTACTTCCAAAAGCATCGAATTTTTCACCATCGCGATACTCCAA
1 G-GGATACTCTAACCTCATTTTTACTTCCAAAAGCATCGAATTTTTCACCATCGGGATACTCTAA
*
103788 CCCCATTTTTACTTTCAAAATCTCGATTTTTCACCATCGGGGATACTCCAACCCCATCATTTCCG
65 CCCCATTTTTAC-TTCAAAATCTCGATTTTTCACCATC-GGGATACTCCAACCCTATCATTTCCG
*
103853 AAAGGATACTCCAACCCCATTTTTA
128 AAGGGATACTCCAACCCCATTTTTA
103878 TTTCCTAAAT
Statistics
Matches: 296, Mismatches: 62, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
209 18 0.06
210 37 0.12
211 20 0.07
212 3 0.01
213 46 0.16
214 49 0.17
215 99 0.33
216 24 0.08
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.32
Consensus pattern (210 bp):
GGGATACTCTAACCTCATTTTTACTTCCAAAAGCATCGAATTTTTCACCATCGGGATACTCTAAC
CCCATTTTTACTTCAAAATCTCGATTTTTCACCATCGGGATACTCCAACCCTATCATTTCCGAAG
GGATACTCCAACCCCATTTTTACTTAAAAAAAAACCAAAATTTTCACCATCGGGGACACTCCAAC
CCCATCATTTACCAA
Found at i:103869 original size:131 final size:128
Alignment explanation
Indices: 103684--103921 Score: 370
Period size: 131 Copynumber: 1.8 Consensus size: 128
103674 AAAACCAAAA
* *
103684 TTTTCACCATTGGGGATACTCCAACCCCATCATTTCCAAGAGGATACTCTAACCCCATTTTTACT
1 TTTTCACCATCGGGGATACTCCAACCCCATCATTTCCAAGAGGATACTCCAACCCCATTTTTACT
*
103749 TCCAAAAGCATCGAATTTTTCACCATCGCGATACTCCAACCCCATTTTTACTTTCAAAATCTCGA
66 TCCAAAA-CATC-AATTTTTCACC-TCGAGATACTCCAACCCCATTTTTACTTTCAAAATCTCGA
103814 T
128 T
*
103815 TTTTCACCATCGGGGATACTCCAACCCCATCATTTCCGAA-AGGATACTCCAACCCCATTTTTAT
1 TTTTCACCATCGGGGATACTCCAACCCCATCATTTCC-AAGAGGATACTCCAACCCCATTTTTAC
* * *
103879 TTCCTAAATATCAATTTTTCATCTCGAGATACTCCAACCCCAT
65 TTCCAAAACATCAATTTTTCACCTCGAGATACTCCAACCCCAT
103922 CATCTCCGAG
Statistics
Matches: 99, Mismatches: 7, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
128 19 0.19
129 10 0.10
130 3 0.03
131 65 0.66
132 2 0.02
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (128 bp):
TTTTCACCATCGGGGATACTCCAACCCCATCATTTCCAAGAGGATACTCCAACCCCATTTTTACT
TCCAAAACATCAATTTTTCACCTCGAGATACTCCAACCCCATTTTTACTTTCAAAATCTCGAT
Found at i:103947 original size:77 final size:79
Alignment explanation
Indices: 103778--103930 Score: 222
Period size: 79 Copynumber: 2.0 Consensus size: 79
103768 TCACCATCGC
* * *
103778 GATACTCCAACCCCATTTTTACTTTCAAAATCTCGATTTTTCACCATCGGGGATACTCCAACCCC
1 GATACTCCAACCCCATTTTTACTTTCAAAATATCAATTTTTCACCATCGGAGATACTCCAACCCC
*
103843 ATCATTTCCGAAAG
66 ATCATCTCCGAAAG
* *
103857 GATACTCCAACCCCATTTTTA-TTTCCTAAATATCAATTTTTCATC-TC-GAGATACTCCAACCC
1 GATACTCCAACCCCATTTTTACTTT-CAAAATATCAATTTTTCACCATCGGAGATACTCCAACCC
103919 CATCATCTCCGA
65 CATCATCTCCGA
103931 GGGGATACCT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
77 25 0.37
78 5 0.07
79 37 0.55
ACGTcount: A:0.28, C:0.32, G:0.08, T:0.32
Consensus pattern (79 bp):
GATACTCCAACCCCATTTTTACTTTCAAAATATCAATTTTTCACCATCGGAGATACTCCAACCCC
ATCATCTCCGAAAG
Found at i:107533 original size:159 final size:156
Alignment explanation
Indices: 107304--107634 Score: 380
Period size: 160 Copynumber: 2.1 Consensus size: 156
107294 TTTCCTATTG
* ** * ***
107304 TTTTTAGTCCTTTAAGGTCACCGGGATGCTTTTAAGATAAAAGTAGTCTTTAAGGGGTATTTTAG
1 TTTTTAGTCCTTTAGGGTCACAAGGATGCTTTCAAGATAAAAGTAGTCCCCAAGGGGTATTTTAG
* ** * * * * *
107369 TAATTTCCCTTAAAATCAAGTTTAATGTAGTTAATTAGGATGCTCTTATGCCAAAGGTGTGCATT
66 TAATTTCCCTTAAAACCAAGTCCAATGTA-ATAACT-GGATGCTCTTATACCAAAGGTGTACACT
*
107434 TAGGAAAGGTTTACCTTTCTT-TGATTATAT
129 TAGGAAAGGTTCACCTTT-TTATGA-T-TAT
* *
107464 TTTTTAGTCCTTTAGGGTCACAAGGATGCTTTCAAGATGAAGGTAGTCCCCAA-GGGTATTTT-G
1 TTTTTAGTCCTTTAGGGTCACAAGGATGCTTTCAAGATAAAAGTAGTCCCCAAGGGGTATTTTAG
* * * *
107527 ATAATTTCCCTTAAAACCAAGTCCAATGTAATCACTGGATGCTTTTATACTAAAGGTGTATACTT
66 -TAATTTCCCTTAAAACCAAGTCCAATGTAATAACTGGATGCTCTTATACCAAAGGTGTACACTT
*
107592 AGGATAGGTTCACCTTTTTATGATTAT
130 AGGAAAGGTTCACCTTTTTATGATTAT
107619 TTTTTAGTCCTTTAGG
1 TTTTTAGTCCTTTAGG
107635 TTATCAAGAT
Statistics
Matches: 146, Mismatches: 23, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
155 19 0.13
156 3 0.02
157 41 0.28
158 4 0.03
159 35 0.24
160 44 0.30
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40
Consensus pattern (156 bp):
TTTTTAGTCCTTTAGGGTCACAAGGATGCTTTCAAGATAAAAGTAGTCCCCAAGGGGTATTTTAG
TAATTTCCCTTAAAACCAAGTCCAATGTAATAACTGGATGCTCTTATACCAAAGGTGTACACTTA
GGAAAGGTTCACCTTTTTATGATTAT
Found at i:114020 original size:18 final size:19
Alignment explanation
Indices: 113994--114033 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
113984 GCCTTTCACG
113994 TTTTGATA-TTTTAGATAT
1 TTTTGATATTTTTAGATAT
*
114012 TTTTTATATTTTTAGATAT
1 TTTTGATATTTTTAGATAT
114031 TTT
1 TTT
114034 AGAATATTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.25, C:0.00, G:0.07, T:0.68
Consensus pattern (19 bp):
TTTTGATATTTTTAGATAT
Found at i:114040 original size:10 final size:9
Alignment explanation
Indices: 113994--114041 Score: 53
Period size: 9 Copynumber: 5.2 Consensus size: 9
113984 GCCTTTCACG
113994 TTTT-GATA
1 TTTTAGATA
114002 TTTTAGATA
1 TTTTAGATA
**
114011 TTTTTTATA
1 TTTTAGATA
114020 TTTTTAGATA
1 -TTTTAGATA
114030 TTTTAGAATA
1 TTTTAG-ATA
114040 TT
1 TT
114042 CATTTTCTCT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
8 4 0.12
9 17 0.52
10 12 0.36
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.62
Consensus pattern (9 bp):
TTTTAGATA
Found at i:114469 original size:118 final size:118
Alignment explanation
Indices: 114261--114473 Score: 426
Period size: 118 Copynumber: 1.8 Consensus size: 118
114251 GGTTTTAGCT
114261 TGATTTGATGATCGATTGAAGAAATGAAATTGAAATCATGATTAGTAGCTCAAACCTAGTGTTTG
1 TGATTTGATGATCGATTGAAGAAATGAAATTGAAATCATGATTAGTAGCTCAAACCTAGTGTTTG
114326 AACAACCTTAGATCCATAATCTCTAGTTCGCTTGATTTGATGATATTGAAATA
66 AACAACCTTAGATCCATAATCTCTAGTTCGCTTGATTTGATGATATTGAAATA
114379 TGATTTGATGATCGATTGAAGAAATGAAATTGAAATCATGATTAGTAGCTCAAACCTAGTGTTTG
1 TGATTTGATGATCGATTGAAGAAATGAAATTGAAATCATGATTAGTAGCTCAAACCTAGTGTTTG
114444 AACAACCTTAGATCCATAATCTCTAGTTCG
66 AACAACCTTAGATCCATAATCTCTAGTTCG
114474 GCTATTTCAT
Statistics
Matches: 95, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
118 95 1.00
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.34
Consensus pattern (118 bp):
TGATTTGATGATCGATTGAAGAAATGAAATTGAAATCATGATTAGTAGCTCAAACCTAGTGTTTG
AACAACCTTAGATCCATAATCTCTAGTTCGCTTGATTTGATGATATTGAAATA
Found at i:122079 original size:18 final size:18
Alignment explanation
Indices: 122052--122101 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
122042 TGATAGGAGG
*
122052 AGAGACAGGAGAGATAAT
1 AGAGAGAGGAGAGATAAT
* *
122070 AGAGAGAGGAGGGATGAT
1 AGAGAGAGGAGAGATAAT
122088 AG-GAGGAGGAGAGA
1 AGAGA-GAGGAGAGA
122102 AGAAGATGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 2 0.07
18 25 0.93
ACGTcount: A:0.44, C:0.02, G:0.46, T:0.08
Consensus pattern (18 bp):
AGAGAGAGGAGAGATAAT
Found at i:122095 original size:42 final size:42
Alignment explanation
Indices: 121986--122095 Score: 193
Period size: 42 Copynumber: 2.6 Consensus size: 42
121976 AAGAGAAAGA
* *
121986 AGAGAGAGGAGGGATGATAGGAGGACAGACAGGAGAGATAGT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
*
122028 AGAGATAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
122070 AGAGAGAGGAGGGATGATAGGAGGAG
1 AGAGAGAGGAGGGATGATAGGAGGAG
122096 GAGAGAAGAA
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.41, C:0.03, G:0.46, T:0.10
Consensus pattern (42 bp):
AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
Found at i:125658 original size:76 final size:76
Alignment explanation
Indices: 125561--125712 Score: 304
Period size: 76 Copynumber: 2.0 Consensus size: 76
125551 TTGTGGTTGT
125561 GGACCGTTTCTCAAAGATGGCTCATTTTGTTCCGTGTAGGAAAGTAGATGATGCTACGCATGTTG
1 GGACCGTTTCTCAAAGATGGCTCATTTTGTTCCGTGTAGGAAAGTAGATGATGCTACGCATGTTG
125626 CGGACTTGTAC
66 CGGACTTGTAC
125637 GGACCGTTTCTCAAAGATGGCTCATTTTGTTCCGTGTAGGAAAGTAGATGATGCTACGCATGTTG
1 GGACCGTTTCTCAAAGATGGCTCATTTTGTTCCGTGTAGGAAAGTAGATGATGCTACGCATGTTG
125702 CGGACTTGTAC
66 CGGACTTGTAC
125713 TTCAAAGAGA
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 76 1.00
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (76 bp):
GGACCGTTTCTCAAAGATGGCTCATTTTGTTCCGTGTAGGAAAGTAGATGATGCTACGCATGTTG
CGGACTTGTAC
Found at i:134747 original size:12 final size:12
Alignment explanation
Indices: 134730--134794 Score: 54
Period size: 12 Copynumber: 5.9 Consensus size: 12
134720 AAGAAAAAGA
134730 AGAGATAGGAGG
1 AGAGATAGGAGG
134742 AGAGAT---AGG
1 AGAGATAGGAGG
*
134751 AGAGATAGTA-G
1 AGAGATAGGAGG
*
134762 AGA-A-ATGAGG
1 AGAGATAGGAGG
134772 -GATGATAGGAGG
1 AGA-GATAGGAGG
134784 AGAGATAGGAG
1 AGAGATAGGAG
134795 AGATAATAGA
Statistics
Matches: 42, Mismatches: 3, Indels: 16
0.69 0.05 0.26
Matches are distributed among these distances:
9 13 0.31
10 2 0.05
11 5 0.12
12 20 0.48
13 2 0.05
ACGTcount: A:0.43, C:0.00, G:0.45, T:0.12
Consensus pattern (12 bp):
AGAGATAGGAGG
Found at i:134779 original size:42 final size:42
Alignment explanation
Indices: 134733--134823 Score: 146
Period size: 42 Copynumber: 2.2 Consensus size: 42
134723 AAAAAGAAGA
* *
134733 GATAGGAGGAGAGATAGGAGAGATAGTAGAGAAATGAGGGAT
1 GATAGGAGGAGAGATAGGAGAGATAATAGAGAAAGGAGGGAT
*
134775 GATAGGAGGAGAGATAGGAGAGATAATAGAGAGAGGAGGGAT
1 GATAGGAGGAGAGATAGGAGAGATAATAGAGAAAGGAGGGAT
*
134817 GACAGGA
1 GATAGGA
134824 AGAGGAGAGA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.43, C:0.01, G:0.44, T:0.12
Consensus pattern (42 bp):
GATAGGAGGAGAGATAGGAGAGATAATAGAGAAAGGAGGGAT
Found at i:137681 original size:12 final size:11
Alignment explanation
Indices: 137659--137734 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
137649 AGAGAAAGAA
*
137659 GAGAGAGGAGG
1 GAGATAGGAGG
137670 GATGATAGGAGG
1 GA-GATAGGAGG
*
137682 AGAGACAGGA--
1 -GAGATAGGAGG
*
137692 GAGATAGTA--
1 GAGATAGGAGG
137701 GAGATAGGAGG
1 GAGATAGGAGG
137712 GATGATAGGAGG
1 GA-GATAGGAGG
*
137724 AGAGACAGGAG
1 -GAGATAGGAG
137735 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:137691 original size:24 final size:24
Alignment explanation
Indices: 137658--137743 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
137648 AAGAGAAAGA
*
137658 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
137682 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
137700 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
137724 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
137744 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:137710 original size:42 final size:42
Alignment explanation
Indices: 137649--137767 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
137639 TAGCCCGCAA
* *
137649 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
137691 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
137733 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
137768 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Done.