Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold2086

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1720
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33


Found at i:900 original size:3 final size:3

Alignment explanation


    Indices: 894--935  Score: 84
    Period size: 3  Copynumber: 14.0  Consensus size: 3

        884 CACCACAAGG

                                                                   
        894 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
          1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA

        936 AACTTGGTGG


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   39  1.00

ACGTcount: A:0.67, C:0.33, G:0.00, T:0.00


Consensus pattern (3 bp):   
CAA

Done.