genome.fa.s2090.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2090
Parameters: 2 7 7 80 10 50 1000
Length:  55998

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1123--1193	20	3.5	20	80	1	79	33	21	16	28	1.95
1365--1402	14	2.7	14	91	0	67	50	5	2	42	1.39
7039--7132	44	2.1	44	94	5	172	51	14	10	23	1.74
7449--7602	76	2.0	76	91	2	247	36	20	13	29	1.91
8776--8927	67	2.3	67	80	2	162	33	17	21	27	1.96
10104--10477	186	2.0	186	98	0	721	29	22	16	31	1.95
13692--13730	20	1.9	21	89	5	62	53	10	15	20	1.70
17002--17042	20	2.1	19	95	4	73	36	17	9	36	1.82
20072--20136	33	2.0	33	84	6	87	40	18	13	27	1.89
21734--21771	20	2.0	20	94	5	69	36	10	15	36	1.82
27857--27902	13	3.8	13	75	21	55	34	17	10	36	1.85
27859--27902	22	2.0	22	95	0	79	34	18	11	36	1.86
30413--30437	13	1.9	13	100	0	50	36	16	16	32	1.90
30569--30606	20	2.0	20	89	5	60	39	10	13	36	1.79
32923--32970	21	2.2	23	78	17	57	31	4	6	58	1.42
33689--33740	20	2.7	19	88	5	77	40	17	13	28	1.87
39829--39867	13	3.0	13	88	0	60	30	15	15	38	1.88
40308--40350	20	2.1	20	82	4	50	18	41	27	11	1.85
42446--42510	33	2.0	33	84	6	87	40	16	13	29	1.88
43468--43553	31	2.8	32	77	13	90	45	29	16	9	1.78
43468--43595	16	8.1	16	67	12	77	45	28	17	9	1.79
44062--44091	16	1.9	15	93	6	51	53	3	16	26	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44776--44814	18	2.1	19	95	4	71	58	0	0	41	0.98
44825--44899	30	2.6	30	81	10	86	62	1	1	34	1.12
45520--45591	21	3.4	21	84	13	94	6	13	30	48	1.69
46018--46082	24	2.7	24	95	0	112	13	24	9	52	1.70
46006--46082	24	3.2	24	83	7	95	12	23	11	51	1.73
46441--46559	43	2.8	43	93	2	195	34	18	20	26	1.96
46610--46701	15	6.1	16	70	24	58	25	0	1	73	0.89
46607--46691	22	3.8	22	82	11	84	24	0	1	74	0.89
46646--46701	5	12.0	5	81	11	66	19	0	0	80	0.71
46692--46994	151	2.0	151	98	0	579	34	18	11	35	1.87
50402--50456	20	2.8	20	100	0	110	41	10	10	36	1.75
51304--51770	49	9.8	49	77	7	435	30	17	27	24	1.97
51597--51766	88	2.0	87	82	2	207	27	18	28	25	1.98
51788--51932	66	2.2	67	83	5	195	38	10	31	19	1.85
51788--51932	34	4.4	33	81	7	150	38	10	31	19	1.85
51920--52241	29	11.1	29	80	7	273	25	17	27	30	1.97
51922--52240	87	3.7	86	80	5	351	24	17	26	31	1.97
51920--52241	116	2.8	116	87	0	457	25	17	27	30	1.97
53684--53749	4	16.0	4	80	9	53	1	1	16	80	0.87
53677--53749	13	5.8	13	75	18	66	1	1	17	79	0.88
53674--53749	22	3.4	22	76	15	75	1	1	17	80	0.85
53678--53743	33	1.9	35	88	11	102	1	1	18	78	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53674--53747	14	5.4	13	78	15	62	1	1	16	81	0.84

Tables:   1

The End!