genome.fa.s2096.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2096
Parameters: 2 7 7 80 10 50 1000
Length:  82266

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1148--1537	52	7.4	53	70	12	223	28	25	13	32	1.93
1525--1596	28	2.6	28	84	0	81	22	30	19	27	1.98
1148--1647	263	1.9	263	87	3	738	27	25	14	32	1.94
1550--1784	80	2.9	77	76	9	229	25	27	15	31	1.95
10306--10442	46	3.0	46	94	0	247	25	14	20	39	1.91
10629--10676	24	2.0	24	100	0	96	45	4	8	41	1.53
10674--10720	22	2.2	20	88	7	67	31	4	19	44	1.70
11277--11338	32	1.9	33	83	9	83	32	14	12	40	1.84
11310--11360	20	2.6	20	84	3	68	31	13	17	37	1.89
11390--11454	33	2.0	32	85	11	87	35	12	18	33	1.88
14811--14886	32	2.4	32	82	10	86	21	17	13	48	1.80
14841--14886	16	2.8	17	70	9	51	21	13	13	52	1.73
18563--18597	18	1.9	18	88	11	54	82	0	8	8	0.83
23025--23062	16	2.2	18	86	9	53	31	2	2	63	1.22
24300--24332	17	1.9	17	93	0	57	42	0	0	57	0.98
24633--24666	2	17.0	2	100	0	68	50	0	0	50	1.00
28594--28630	17	2.1	18	90	10	58	35	13	16	35	1.88
28612--28637	13	2.0	13	100	0	52	38	15	15	30	1.88
28594--28657	33	2.0	32	87	3	92	40	14	14	31	1.85
32342--32366	13	1.9	13	100	0	50	36	16	16	32	1.90
34222--34278	21	2.8	21	78	2	71	35	12	21	31	1.90
35243--35324	28	2.9	28	83	7	96	25	17	32	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35304--35476	52	3.4	51	80	5	204	32	12	25	30	1.92
38005--38030	13	2.0	13	100	0	52	38	15	15	30	1.88
37984--38050	33	2.0	33	88	0	98	43	16	14	25	1.86
38070--38137	19	3.9	18	76	23	83	38	14	11	35	1.83
38092--38116	13	1.9	13	100	0	50	32	16	16	36	1.90
38073--38135	32	2.0	32	96	0	117	36	15	12	34	1.86
38783--39699	55	16.3	55	88	6	1217	23	20	28	27	1.99
40692--40741	1	50.0	1	81	0	55	0	4	6	90	0.57
40688--40742	12	4.3	12	88	6	74	0	3	9	87	0.66
53134--53215	28	2.9	28	80	7	96	26	17	31	24	1.97
53198--53368	51	3.3	51	79	4	198	32	11	26	29	1.92
53351--53426	27	2.8	28	88	6	102	21	21	34	23	1.97
55895--55920	13	2.0	13	100	0	52	38	15	15	30	1.88
55874--55939	33	2.0	32	88	2	96	42	16	15	25	1.87
56050--56127	21	3.7	21	98	0	147	37	20	10	32	1.86
56725--57624	55	16.3	54	88	7	1171	21	19	29	29	1.98
56725--57624	221	4.1	220	88	8	1232	21	19	29	29	1.98
58604--58659	1	56.0	1	85	0	76	0	1	5	92	0.43
68239--68362	52	2.4	51	93	4	205	29	17	18	34	1.94
68371--68395	13	1.9	13	100	0	50	36	16	16	32	1.90
68350--68415	33	2.0	33	87	0	96	37	12	18	31	1.87
68456--68480	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68435--68499	32	2.0	32	90	0	103	40	13	12	33	1.82
71310--71346	17	2.1	18	90	10	58	35	13	16	35	1.88
71328--71353	13	2.0	13	100	0	52	38	15	15	30	1.88
71310--71373	33	2.0	33	90	3	103	40	15	14	29	1.86
74168--74290	50	2.4	51	91	5	196	29	17	18	34	1.94
74168--74309	50	2.8	49	83	14	164	30	17	19	32	1.95
74363--74429	33	2.0	33	88	0	98	40	13	11	34	1.81
74385--74409	13	1.9	13	100	0	50	32	16	16	36	1.90
75367--75822	49	9.5	49	86	7	614	31	18	26	23	1.97
75835--75938	32	3.2	33	89	4	167	19	18	36	25	1.94
75941--76282	34	10.6	33	74	15	263	32	13	33	19	1.91
76010--76260	61	4.1	60	75	15	226	31	13	35	20	1.91
75974--76261	97	3.1	95	81	11	335	32	13	34	20	1.91
76203--76320	30	3.8	31	84	4	121	31	16	28	22	1.96

Tables:   1

The End!