genome.fa.s2097.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2097
Parameters: 2 7 7 80 10 50 1000
Length:  45801

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1953--2278	28	11.4	28	83	6	368	31	33	16	18	1.93
1953--2252	57	5.2	58	89	4	457	31	33	16	18	1.93
1949--2251	115	2.6	115	93	1	500	31	33	16	18	1.93
2298--2756	49	9.6	49	81	7	552	24	24	19	31	1.98
2298--2756	141	3.2	141	82	6	545	24	24	19	31	1.98
2298--2756	190	2.4	190	94	0	803	24	24	19	31	1.98
3498--3522	13	1.9	13	100	0	50	36	16	16	32	1.90
3478--3544	33	2.0	33	88	0	98	32	11	14	40	1.83
3585--3730	52	2.8	50	86	6	202	34	18	17	29	1.94
6803--6926	52	2.4	52	93	0	212	36	19	15	29	1.92
12143--12181	13	3.0	13	84	0	51	20	20	25	33	1.97
12772--12819	17	3.0	15	80	14	51	79	2	14	4	0.98
21365--22028	157	4.3	157	81	6	751	23	16	20	39	1.92
21436--21997	312	1.8	310	85	4	772	23	16	20	39	1.92
24179--24203	13	1.9	13	100	0	50	88	12	0	0	0.53
25591--26130	44	12.3	44	70	6	247	20	22	16	41	1.90
25573--25954	131	2.9	132	82	1	435	19	21	15	42	1.89
25743--25995	132	1.9	131	83	2	328	19	20	15	44	1.86
25841--26042	88	2.3	88	98	0	386	20	20	16	42	1.89
26024--26174	44	3.4	44	75	5	135	18	25	19	36	1.94
27720--28023	156	2.0	151	83	5	385	30	8	8	51	1.62
29336--29393	23	2.4	25	91	8	93	27	5	12	55	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29350--29388	11	3.5	11	80	19	53	28	5	10	56	1.54
29358--29399	11	3.8	11	80	20	52	30	2	11	54	1.49
29414--29932	165	3.1	165	82	5	636	34	11	13	41	1.79
30265--30649	155	2.5	154	79	6	375	27	12	18	41	1.87
30246--30649	156	2.6	155	78	5	397	26	12	19	41	1.87
30935--30979	20	2.2	21	84	11	58	42	6	20	31	1.77
31061--31162	52	2.0	52	90	0	159	31	18	10	39	1.85
37008--37158	81	1.9	81	94	0	266	47	11	3	37	1.56
38708--38990	146	1.9	146	86	2	399	43	11	11	33	1.77
42474--42951	164	2.9	162	79	6	460	31	10	8	49	1.67
42935--42979	18	2.4	18	81	3	54	33	11	4	51	1.58

Tables:   1

The End!