genome.fa.s2099.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2099
Parameters: 2 7 7 80 10 50 1000
Length:  38480

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--170	29	5.9	28	81	7	182	27	28	18	24	1.98
1--165	57	2.8	57	86	3	222	28	28	19	23	1.98
4606--4986	14	27.5	14	71	8	224	30	25	18	25	1.98
4578--4710	41	3.2	41	83	5	133	31	26	18	24	1.97
4608--4986	27	13.7	27	74	8	138	30	25	18	25	1.98
4622--4737	41	2.8	40	85	3	133	32	29	16	21	1.95
4735--4875	41	3.4	41	74	4	140	27	24	20	26	1.99
4716--4869	82	1.9	84	86	2	222	27	23	20	27	1.99
5731--5990	135	1.9	135	79	7	287	34	13	25	26	1.93
5828--6353	271	1.9	271	83	4	686	34	14	24	26	1.94
7724--7777	20	2.7	20	79	0	63	38	12	11	37	1.79
7828--7877	20	2.5	20	90	0	73	34	22	8	36	1.83
8848--8886	20	1.9	21	85	15	55	58	5	7	28	1.47
13014--13053	13	3.1	13	88	0	62	40	15	12	32	1.84
15981--16041	26	2.3	26	94	5	106	36	22	3	37	1.71
19224--19289	20	3.7	20	73	26	83	34	15	12	37	1.84
19245--19302	13	4.9	13	74	23	65	32	15	13	37	1.87
19225--19322	33	3.0	33	95	0	169	32	16	14	36	1.89
19352--19424	20	3.7	19	85	7	76	39	16	15	28	1.89
24903--24963	16	3.8	16	87	8	72	26	18	16	39	1.91
28070--28099	11	2.6	12	94	5	53	20	0	0	80	0.72
36834--36884	21	2.5	20	81	9	68	33	15	11	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37101--37158	26	2.4	24	81	13	66	31	0	68	0	0.89
37124--37167	23	1.9	23	90	0	70	31	0	68	0	0.90
37127--37179	23	2.3	23	83	0	61	37	0	62	0	0.96

Tables:   1

The End!