Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold21
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2821038
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.33
Warning! 98422 characters in sequence are not A, C, G, or T
File 11 of 15
Found at i:1614289 original size:15 final size:17
Alignment explanation
Indices: 1614271--1614304 Score: 54
Period size: 15 Copynumber: 2.1 Consensus size: 17
1614261 TTTTTTTGAT
1614271 TATTTTT-ATT-TAAAA
1 TATTTTTAATTATAAAA
1614286 TATTTTTAATTATAAAA
1 TATTTTTAATTATAAAA
1614303 TA
1 TA
1614305 ATAATAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
16 3 0.18
17 7 0.41
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TATTTTTAATTATAAAA
Found at i:1614993 original size:11 final size:11
Alignment explanation
Indices: 1614963--1614997 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
1614953 AATATAATAA
1614963 AATATATTTAT
1 AATATATTTAT
*
1614974 -ATTTATTTAT
1 AATATATTTAT
1614984 AATATATTTAT
1 AATATATTTAT
1614995 AAT
1 AAT
1614998 TAATATTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (11 bp):
AATATATTTAT
Found at i:1615022 original size:31 final size:30
Alignment explanation
Indices: 1614982--1615048 Score: 86
Period size: 30 Copynumber: 2.2 Consensus size: 30
1614972 ATATTTATTT
1614982 ATAATATA-TTTATAATTAATATTTTAA-AAA
1 ATAATATATTTTAT-ATTAA-ATTTTAATAAA
1615012 ATAAGTATATTTTATATTAAATTTTAATAAA
1 ATAA-TATATTTTATATTAAATTTTAATAAA
1615043 A-AATAT
1 ATAATAT
1615049 TATCTAACCA
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
29 3 0.09
30 13 0.38
31 13 0.38
32 5 0.15
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.46
Consensus pattern (30 bp):
ATAATATATTTTATATTAAATTTTAATAAA
Found at i:1615038 original size:30 final size:31
Alignment explanation
Indices: 1614982--1615048 Score: 88
Period size: 31 Copynumber: 2.2 Consensus size: 31
1614972 ATATTTATTT
1614982 ATAATATATTTATAATTAATATTTTAA-AAA
1 ATAATATATTTATAATTAATATTTTAATAAA
1615012 ATAAGTATATTT-TATATTAA-ATTTTAATAAA
1 ATAA-TATATTTATA-ATTAATATTTTAATAAA
1615043 A-AATAT
1 ATAATAT
1615049 TATCTAACCA
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
29 3 0.09
30 15 0.44
31 16 0.47
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.46
Consensus pattern (31 bp):
ATAATATATTTATAATTAATATTTTAATAAA
Found at i:1624785 original size:13 final size:14
Alignment explanation
Indices: 1624769--1624812 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
1624759 TCACTTAATT
1624769 ATTATTTTTAA-AA
1 ATTATTTTTAATAA
* *
1624782 ATTAATTTTAATAT
1 ATTATTTTTAATAA
*
1624796 ATTATTTTTATTAA
1 ATTATTTTTAATAA
1624810 ATT
1 ATT
1624813 TTAAAAAATA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
ATTATTTTTAATAA
Found at i:1624799 original size:14 final size:14
Alignment explanation
Indices: 1624763--1624805 Score: 54
Period size: 13 Copynumber: 3.2 Consensus size: 14
1624753 TAAGGATCAC
1624763 TTAAT-TATTATTT
1 TTAATATATTATTT
* *
1624776 TTAA-AAATTAATT
1 TTAATATATTATTT
1624789 TTAATATATTATTT
1 TTAATATATTATTT
1624803 TTA
1 TTA
1624806 TTAAATTTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
13 14 0.58
14 10 0.42
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
TTAATATATTATTT
Found at i:1624826 original size:24 final size:26
Alignment explanation
Indices: 1624781--1624840 Score: 63
Period size: 24 Copynumber: 2.4 Consensus size: 26
1624771 TATTTTTAAA
* * *
1624781 AATT-AATTTTAATATATTATTT-TT
1 AATTAAATTTTAAAAAATAATTTATT
1624805 -ATTAAATTTTAAAAAATAATTTATT
1 AATTAAATTTTAAAAAATAATTTATT
*
1624830 AATTACATTTT
1 AATTAAATTTT
1624841 TAATACCATC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
23 3 0.10
24 15 0.52
25 2 0.07
26 9 0.31
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (26 bp):
AATTAAATTTTAAAAAATAATTTATT
Found at i:1625803 original size:26 final size:26
Alignment explanation
Indices: 1625758--1625819 Score: 65
Period size: 26 Copynumber: 2.5 Consensus size: 26
1625748 TATAAAAAAT
1625758 TTTAT-TA-TTTAAAATAAATTAATA
1 TTTATATATTTTAAAATAAATTAATA
* * *
1625782 TTTATATATTTTATAATTAATTTATA
1 TTTATATATTTTAAAATAAATTAATA
* *
1625808 TATAAATATTTT
1 TTTATATATTTT
1625820 TATTGATTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 24 0.77
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (26 bp):
TTTATATATTTTAAAATAAATTAATA
Found at i:1627176 original size:22 final size:20
Alignment explanation
Indices: 1627151--1627191 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
1627141 GTTTTCTTGA
1627151 TTAATGATCCCTTTTTATTTTC
1 TTAAT-ATCCCTTTTT-TTTTC
*
1627173 TTAATTTCCCTTTTTTTTT
1 TTAATATCCCTTTTTTTTT
1627192 AATTTCTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 9 0.50
22 5 0.28
ACGTcount: A:0.15, C:0.17, G:0.02, T:0.66
Consensus pattern (20 bp):
TTAATATCCCTTTTTTTTTC
Found at i:1628191 original size:13 final size:13
Alignment explanation
Indices: 1628173--1628198 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1628163 CCAAGCATTT
1628173 ATATAGAATTCCC
1 ATATAGAATTCCC
1628186 ATATAGAATTCCC
1 ATATAGAATTCCC
1628199 CGGTCCTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (13 bp):
ATATAGAATTCCC
Found at i:1629558 original size:2 final size:2
Alignment explanation
Indices: 1629551--1629576 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1629541 TGGGGCTGGC
1629551 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
1629577 CCTTACTAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1633257 original size:16 final size:17
Alignment explanation
Indices: 1633236--1633274 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
1633226 TTTAAGTATA
*
1633236 TTTAATTGCTTTT-TTT
1 TTTAATTACTTTTCTTT
1633252 TTTAA-TACTTTTCTTT
1 TTTAATTACTTTTCTTT
1633268 TTTAATT
1 TTTAATT
1633275 CTTATTGTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 6 0.30
16 13 0.65
17 1 0.05
ACGTcount: A:0.18, C:0.08, G:0.03, T:0.72
Consensus pattern (17 bp):
TTTAATTACTTTTCTTT
Found at i:1633784 original size:24 final size:24
Alignment explanation
Indices: 1633744--1633793 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
1633734 ATAAATATAA
*
1633744 AAATATATATTACATAATCTATTT
1 AAATATATATTACATAATATATTT
*
1633768 AAATATA-ATTAATATAATATATTT
1 AAATATATATT-ACATAATATATTT
1633792 AA
1 AA
1633794 TAATTTATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 3 0.13
24 20 0.87
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (24 bp):
AAATATATATTACATAATATATTT
Found at i:1634882 original size:3 final size:3
Alignment explanation
Indices: 1634874--1634906 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
1634864 CTTGCTAAAG
1634874 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1634907 CTCTGTTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:1635262 original size:20 final size:21
Alignment explanation
Indices: 1635237--1635278 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
1635227 TTTTATTTAT
*
1635237 ATAATTATTTTTAT-TTTAAA
1 ATAATTATTATTATATTTAAA
1635257 ATAATTATTATTATATTTAAA
1 ATAATTATTATTATATTTAAA
1635278 A
1 A
1635279 ATAAATTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
ATAATTATTATTATATTTAAA
Found at i:1635285 original size:23 final size:20
Alignment explanation
Indices: 1635237--1635282 Score: 65
Period size: 22 Copynumber: 2.2 Consensus size: 20
1635227 TTTTATTTAT
*
1635237 ATAATTATTTTTATTTTAAA
1 ATAATTATTTTTATTTAAAA
1635257 ATAATTATTATTATATTTAAAA
1 ATAATTATT-TT-TATTTAAAA
1635279 ATAA
1 ATAA
1635283 ATTTAAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 9 0.39
21 2 0.09
22 12 0.52
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
ATAATTATTTTTATTTAAAA
Found at i:1636015 original size:20 final size:21
Alignment explanation
Indices: 1635992--1636036 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
1635982 AAATTTTTAA
*
1635992 TTAATTTAATTGAT-TT-AATT
1 TTAATTAAATT-ATATTAAATT
1636012 TTAATTAAATTATATTAAATT
1 TTAATTAAATTATATTAAATT
1636033 TTAA
1 TTAA
1636037 ATAATTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 2 0.09
20 12 0.55
21 8 0.36
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (21 bp):
TTAATTAAATTATATTAAATT
Found at i:1638559 original size:20 final size:21
Alignment explanation
Indices: 1638531--1638571 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
1638521 ATAGAATAAT
*
1638531 TTATTAATATAT-AAAATTTA
1 TTATAAATATATAAAAATTTA
1638551 TTATAAATATATAAAAATTTA
1 TTATAAATATATAAAAATTTA
1638572 AATATAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
TTATAAATATATAAAAATTTA
Found at i:1638601 original size:22 final size:23
Alignment explanation
Indices: 1638539--1638606 Score: 79
Period size: 22 Copynumber: 3.0 Consensus size: 23
1638529 ATTTATTAAT
* *
1638539 ATATAAAATTTATTATAAATAT-
1 ATATAAAATTTAATATAATTATA
1638561 ATA-AAAATTTAAATATAATTATA
1 ATATAAAATTT-AATATAATTATA
*
1638584 ATATAAAA-TTAATATAATGATA
1 ATATAAAATTTAATATAATTATA
1638606 A
1 A
1638607 GTAATTAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
21 7 0.17
22 24 0.60
23 5 0.12
24 4 0.10
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (23 bp):
ATATAAAATTTAATATAATTATA
Found at i:1640690 original size:16 final size:15
Alignment explanation
Indices: 1640648--1640693 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
1640638 TAAAATTTAA
1640648 AAAATTATAAATATT
1 AAAATTATAAATATT
**
1640663 ATGATT-TAAATATT
1 AAAATTATAAATATT
1640677 AAAATTACTAAATATT
1 AAAATTA-TAAATATT
1640693 A
1 A
1640694 TTTTATAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
14 12 0.48
15 4 0.16
16 9 0.36
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (15 bp):
AAAATTATAAATATT
Found at i:1641662 original size:11 final size:11
Alignment explanation
Indices: 1641632--1641664 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
1641622 CTTTTACAAG
*
1641632 CTTTCTTTCTT
1 CTTTCTTTTTT
1641643 CTTTCTTTTTT
1 CTTTCTTTTTT
1641654 CTTTCTTTTTT
1 CTTTCTTTTTT
1641665 AAAAAATAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (11 bp):
CTTTCTTTTTT
Found at i:1642561 original size:15 final size:15
Alignment explanation
Indices: 1642502--1642561 Score: 57
Period size: 15 Copynumber: 3.7 Consensus size: 15
1642492 GGTTAACTCT
1642502 TTAAATTTAAAAATTAA
1 TTAAATTTAAAAA-T-A
*
1642519 TTTAATACTTAAAAATA
1 -TTAA-ATTTAAAAATA
**
1642536 TTAAAAATAAAAATA
1 TTAAATTTAAAAATA
1642551 TTAAATTTAAA
1 TTAAATTTAAA
1642562 TTATTTATTT
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
15 18 0.50
16 4 0.11
17 1 0.03
18 5 0.14
19 8 0.22
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (15 bp):
TTAAATTTAAAAATA
Found at i:1646612 original size:16 final size:16
Alignment explanation
Indices: 1646576--1646621 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
1646566 AAAATATATT
1646576 TAATTTATAT-TTTAA
1 TAATTTATATATTTAA
1646591 -ATATTTATATATTTAA
1 TA-ATTTATATATTTAA
1646607 TAATTTATATTATTT
1 TAATTTATA-TATTT
1646622 TTACATACAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
14 1 0.04
15 8 0.30
16 12 0.44
17 6 0.22
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TAATTTATATATTTAA
Found at i:1656731 original size:13 final size:12
Alignment explanation
Indices: 1656697--1656742 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
1656687 ATATATATAT
1656697 ATATTTAATTTT-
1 ATATTT-ATTTTA
1656709 ATATTTATTTTA
1 ATATTTATTTTA
1656721 ATATATTATTTTA
1 ATAT-TTATTTTA
*
1656734 ATTTTTATT
1 ATATTTATT
1656743 ATAAAATTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
11 5 0.16
12 15 0.48
13 11 0.35
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTTATTTTA
Found at i:1657125 original size:63 final size:63
Alignment explanation
Indices: 1657057--1657183 Score: 236
Period size: 63 Copynumber: 2.0 Consensus size: 63
1657047 GCCAGGCTAA
1657057 ATTAAAACTTAAGTTTAAAATACATAATTATTTCAAATTATAATTTCATCCATGAATATATCT
1 ATTAAAACTTAAGTTTAAAATACATAATTATTTCAAATTATAATTTCATCCATGAATATATCT
* *
1657120 ATTAAAACTTAAGTTTAGAATACATAATTATTTCAAATTATGATTTCATCCATGAATATATCT
1 ATTAAAACTTAAGTTTAAAATACATAATTATTTCAAATTATAATTTCATCCATGAATATATCT
1657183 A
1 A
1657184 ATTTTTGAGT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.43, C:0.11, G:0.05, T:0.41
Consensus pattern (63 bp):
ATTAAAACTTAAGTTTAAAATACATAATTATTTCAAATTATAATTTCATCCATGAATATATCT
Found at i:1660223 original size:2 final size:2
Alignment explanation
Indices: 1660211--1660255 Score: 56
Period size: 2 Copynumber: 23.0 Consensus size: 2
1660201 TCTGGTAAAG
* * *
1660211 AT AT AT A- AT AT AT AT GT AT AT AT AT GT AT AT AT AT AT AC AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1660252 AT AT
1 AT AT
1660256 TATTGTCAAG
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (2 bp):
AT
Found at i:1661291 original size:3 final size:3
Alignment explanation
Indices: 1661285--1661311 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
1661275 ATTATCTGAT
1661285 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1661312 AATATTTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:1662404 original size:5 final size:5
Alignment explanation
Indices: 1662394--1662419 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
1662384 AAAATATTTA
1662394 TAAAT TAAAT TAAAT TAAAT TAAAT T
1 TAAAT TAAAT TAAAT TAAAT TAAAT T
1662420 TATTTAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TAAAT
Found at i:1663264 original size:31 final size:30
Alignment explanation
Indices: 1663232--1663290 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
1663222 TTATTTTTTA
*
1663232 AAATTTA-ATAAAAATAATTTATTAAATATT
1 AAATTTATATAAAAATAA-TAATTAAATATT
*
1663262 AAATTTATTTTAAAAATAATAATTAAATA
1 AAATTTA-TATAAAAATAATAATTAAATA
1663291 GTATTTAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 7 0.28
31 9 0.36
32 9 0.36
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (30 bp):
AAATTTATATAAAAATAATAATTAAATATT
Found at i:1664335 original size:4 final size:4
Alignment explanation
Indices: 1664322--1664350 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
1664312 AAATTAACTC
1664322 AAAT -AAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
1664351 CAACCGTAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
3 3 0.12
4 21 0.88
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:1667910 original size:25 final size:26
Alignment explanation
Indices: 1667868--1667918 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
1667858 AAATAAAATG
1667868 TAAACAAATAATTAAAATATAATATA
1 TAAACAAATAATTAAAATATAATATA
1667894 TAAA-AAATAA-TATAAATATAATATA
1 TAAACAAATAATTA-AAATATAATATA
1667919 ATCATGATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 2 0.08
25 18 0.75
26 4 0.17
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (26 bp):
TAAACAAATAATTAAAATATAATATA
Found at i:1675477 original size:69 final size:69
Alignment explanation
Indices: 1675381--1675530 Score: 203
Period size: 69 Copynumber: 2.2 Consensus size: 69
1675371 CATTTAAGGT
* * * *
1675381 TCAATATTAAAACTAGTACTATGAGACTCAAATGAGTCATCTTATTATTTTAATGATGAATCAAT
1 TCAA-ATTAAAACTAATACTATGAGACTCAAACGAATCATCTTATTATTTCAATGATGAATCAAT
1675446 ATATA
65 ATATA
* **
1675451 TCGAATTAAAACTAATA-TCATGAGACTCAAACGAATCATCTTATTATTTCAATGATGGGTCAAT
1 TCAAATTAAAACTAATACT-ATGAGACTCAAACGAATCATCTTATTATTTCAATGATGAATCAAT
*
1675515 ATATG
65 ATATA
1675520 TCAAATTAAAA
1 TCAAATTAAAA
1675531 TCAACTTTTA
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
68 1 0.01
69 66 0.94
70 3 0.04
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.35
Consensus pattern (69 bp):
TCAAATTAAAACTAATACTATGAGACTCAAACGAATCATCTTATTATTTCAATGATGAATCAATA
TATA
Found at i:1676493 original size:17 final size:19
Alignment explanation
Indices: 1676461--1676498 Score: 62
Period size: 17 Copynumber: 2.1 Consensus size: 19
1676451 GTTGAATTAT
1676461 TATTTAATTATAAATTTAA
1 TATTTAATTATAAATTTAA
1676480 TATTT-ATT-TAAATTTAA
1 TATTTAATTATAAATTTAA
1676497 TA
1 TA
1676499 ATAAAATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 11 0.58
18 3 0.16
19 5 0.26
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TATTTAATTATAAATTTAA
Found at i:1676510 original size:12 final size:12
Alignment explanation
Indices: 1676495--1676548 Score: 63
Period size: 12 Copynumber: 4.2 Consensus size: 12
1676485 ATTTAAATTT
1676495 AATAATAAAATA
1 AATAATAAAATA
1676507 AATAAATAAGAATATA
1 AAT-AAT-A-AA-ATA
*
1676523 AATAATATAATA
1 AATAATAAAATA
1676535 AATAATAAAATA
1 AATAATAAAATA
1676547 AA
1 AA
1676549 CTCTTAAATT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
12 19 0.53
13 4 0.11
14 2 0.06
15 5 0.14
16 6 0.17
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (12 bp):
AATAATAAAATA
Found at i:1676534 original size:28 final size:26
Alignment explanation
Indices: 1676495--1676546 Score: 77
Period size: 28 Copynumber: 1.9 Consensus size: 26
1676485 ATTTAAATTT
1676495 AATAATAAAATAAATAAATAAGAATATA
1 AATAATAAAATAAAT-AATAA-AATATA
*
1676523 AATAATATAATAAATAATAAAATA
1 AATAATAAAATAAATAATAAAATA
1676547 AACTCTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 4 0.17
27 5 0.22
28 14 0.61
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (26 bp):
AATAATAAAATAAATAATAAAATATA
Found at i:1677315 original size:53 final size:54
Alignment explanation
Indices: 1677194--1677302 Score: 211
Period size: 53 Copynumber: 2.0 Consensus size: 54
1677184 TATAGAATCT
1677194 TTAATCATTATTTAATACACCCCCAAAAGACACAAACTTAGCTGTTAAAAAAGA
1 TTAATCATTATTTAATACACCCCCAAAAGACACAAACTTAGCTGTTAAAAAAGA
1677248 TTAATCATTATTTAATAC-CCCCCAAAAGACACAAACTTAGCTGTTAAAAAAGA
1 TTAATCATTATTTAATACACCCCCAAAAGACACAAACTTAGCTGTTAAAAAAGA
1677301 TT
1 TT
1677303 TTCTTGGGTT
Statistics
Matches: 55, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
53 37 0.67
54 18 0.33
ACGTcount: A:0.45, C:0.20, G:0.07, T:0.28
Consensus pattern (54 bp):
TTAATCATTATTTAATACACCCCCAAAAGACACAAACTTAGCTGTTAAAAAAGA
Found at i:1677830 original size:21 final size:21
Alignment explanation
Indices: 1677786--1677828 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
1677776 AAAATCAAAA
*
1677786 AATAAAAATTTATTTTAATAT
1 AATAAAAATATATTTTAATAT
1677807 AATAAAAATATACTTTTTAATA
1 AATAAAAATATA--TTTTAATA
1677829 ATTTAACTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
23 8 0.42
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (21 bp):
AATAAAAATATATTTTAATAT
Found at i:1678475 original size:15 final size:15
Alignment explanation
Indices: 1678428--1678515 Score: 51
Period size: 16 Copynumber: 5.7 Consensus size: 15
1678418 TATGAATTTG
1678428 TATATATTATTATA-T
1 TATATATT-TTATATT
*
1678443 TATA-A--TTATGTT
1 TATATATTTTATATT
1678455 TAATATATTTTATATT
1 T-ATATATTTTATATT
1678471 TATATAAATTTTAATATT
1 TATAT--ATTTT-ATATT
*
1678489 T-TATTAATTTATATT
1 TATA-TATTTTATATT
*
1678504 ATATAAATTTTA
1 -TATATATTTTA
1678516 AAAAATAATT
Statistics
Matches: 57, Mismatches: 5, Indels: 21
0.69 0.06 0.25
Matches are distributed among these distances:
11 4 0.07
12 2 0.04
13 3 0.05
14 2 0.04
15 13 0.23
16 17 0.30
17 9 0.16
18 7 0.12
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (15 bp):
TATATATTTTATATT
Found at i:1678569 original size:18 final size:16
Alignment explanation
Indices: 1678527--1678559 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
1678517 AAAATAATTA
*
1678527 TATTTTTATTATTTTT
1 TATTTTAATTATTTTT
1678543 TATTTTAATTATTTTT
1 TATTTTAATTATTTTT
1678559 T
1 T
1678560 TGTGTTTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (16 bp):
TATTTTAATTATTTTT
Found at i:1684321 original size:2 final size:2
Alignment explanation
Indices: 1684316--1684348 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1684306 TATATATATA
1684316 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1684349 ATGTATATGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:1684759 original size:22 final size:23
Alignment explanation
Indices: 1684731--1684774 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
1684721 TAGATTTAAT
* *
1684731 AATATT-AGATATTATATAAAAA
1 AATATTAAGACATGATATAAAAA
1684753 AATATTAAGACATGATATAAAA
1 AATATTAAGACATGATATAAAA
1684775 TATATTACGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.32
Consensus pattern (23 bp):
AATATTAAGACATGATATAAAAA
Found at i:1684857 original size:18 final size:21
Alignment explanation
Indices: 1684836--1684893 Score: 63
Period size: 20 Copynumber: 3.0 Consensus size: 21
1684826 ATAATATAAA
*
1684836 TTAT-TAATATAT-TAA-ATT
1 TTATATAATATATAAAATATT
1684854 TTATATAA-ATATAAAATATT
1 TTATATAATATATAAAATATT
*
1684874 TTATATAATAT-TATAATATT
1 TTATATAATATATAAAATATT
1684894 ACAAATATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
18 8 0.24
19 5 0.15
20 19 0.56
21 2 0.06
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
TTATATAATATATAAAATATT
Found at i:1685232 original size:19 final size:18
Alignment explanation
Indices: 1685176--1685233 Score: 59
Period size: 17 Copynumber: 3.3 Consensus size: 18
1685166 ATTTAAATAT
1685176 AAATTTTA-A-TATATTA
1 AAATTTTATATTATATTA
* *
1685192 ATAATTTTTTATCATA-TA
1 A-AATTTTATATTATATTA
1685210 AAATTTTATATTATATTTA
1 AAATTTTATATTATA-TTA
1685229 AAATT
1 AAATT
1685234 ATTAAATCTG
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
16 1 0.03
17 18 0.55
18 4 0.12
19 10 0.30
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (18 bp):
AAATTTTATATTATATTA
Found at i:1685635 original size:5 final size:5
Alignment explanation
Indices: 1685621--1685674 Score: 56
Period size: 5 Copynumber: 10.6 Consensus size: 5
1685611 CTGCCCGCTT
* * *
1685621 CCTT- CCTTC CCTTC CCTTC CCTTC CCTCTGC CCTTT CCTTT CCTTT CCTTC
1 CCTTC CCTTC CCTTC CCTTC CCTTC CCT-T-C CCTTC CCTTC CCTTC CCTTC
1685672 CCT
1 CCT
1685675 GGACTCACTA
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
4 4 0.09
5 35 0.78
6 2 0.04
7 4 0.09
ACGTcount: A:0.00, C:0.54, G:0.02, T:0.44
Consensus pattern (5 bp):
CCTTC
Found at i:1695681 original size:15 final size:15
Alignment explanation
Indices: 1695651--1695697 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
1695641 TTTATATTAG
1695651 TATATTT-TTATAATT
1 TATATTTATT-TAATT
*
1695666 TTTATATTA-TTAATT
1 TATAT-TTATTTAATT
1695681 TATATTTATTTAATT
1 TATATTTATTTAATT
1695696 TA
1 TA
1695698 ATTATTATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
14 3 0.11
15 21 0.78
16 3 0.11
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
TATATTTATTTAATT
Found at i:1695684 original size:13 final size:13
Alignment explanation
Indices: 1695666--1695709 Score: 54
Period size: 13 Copynumber: 3.2 Consensus size: 13
1695656 TTTTATAATT
1695666 TTTATATTATTAA
1 TTTATATTATTAA
1695679 TTTATATTTATTTAA
1 TTTATA-TTA-TTAA
1695694 TTTA-ATTATTATA
1 TTTATATTATTA-A
1695707 TTT
1 TTT
1695710 TATGTTCGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 3 0.11
13 13 0.46
14 4 0.14
15 8 0.29
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (13 bp):
TTTATATTATTAA
Found at i:1696570 original size:2 final size:2
Alignment explanation
Indices: 1696563--1696596 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
1696553 ATAACAAAAC
1696563 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1696597 GTGTTAAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1697043 original size:23 final size:23
Alignment explanation
Indices: 1696992--1697036 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
1696982 TAAGTTTAAA
*
1696992 TTTTAATTTTAATATTTATAATT
1 TTTTATTTTTAATATTTATAATT
1697015 TTTTATTTTTAA-A-TTATAATT
1 TTTTATTTTTAATATTTATAATT
1697036 T
1 T
1697037 CTTTTATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 9 0.43
22 1 0.05
23 11 0.52
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (23 bp):
TTTTATTTTTAATATTTATAATT
Found at i:1697226 original size:21 final size:21
Alignment explanation
Indices: 1697200--1697239 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
1697190 AAGAAGTAAA
1697200 AATGAATATATAGAAGTATGG
1 AATGAATATATAGAAGTATGG
1697221 AATGAATATATAGAAGTAT
1 AATGAATATATAGAAGTAT
1697240 AACCACTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.20, T:0.30
Consensus pattern (21 bp):
AATGAATATATAGAAGTATGG
Found at i:1698430 original size:24 final size:22
Alignment explanation
Indices: 1698400--1698450 Score: 66
Period size: 24 Copynumber: 2.2 Consensus size: 22
1698390 TTTATATTTA
*
1698400 TATTTAAATATGATTTGATTTATT
1 TATTTAAATATAATTT-A-TTATT
*
1698424 TATTTAAATTTAATTTATTATT
1 TATTTAAATATAATTTATTATT
1698446 TATTT
1 TATTT
1698451 TATTAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 10 0.40
23 1 0.04
24 14 0.56
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (22 bp):
TATTTAAATATAATTTATTATT
Found at i:1698446 original size:18 final size:19
Alignment explanation
Indices: 1698412--1698447 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
1698402 TTTAAATATG
*
1698412 ATTTGATTTATTTATTTAA
1 ATTTAATTTATTTATTTAA
1698431 ATTTAATTTA-TTATTTA
1 ATTTAATTTATTTATTTA
1698448 TTTTATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (19 bp):
ATTTAATTTATTTATTTAA
Found at i:1698485 original size:22 final size:21
Alignment explanation
Indices: 1698460--1698501 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
1698450 TTATTAAAAA
1698460 ATAT-TTTTAT-ATTAATATTT
1 ATATATTTTATAATTAA-ATTT
1698480 ATATATTTTATAATTAAATTT
1 ATATATTTTATAATTAAATTT
1698501 A
1 A
1698502 AATAAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.20
21 11 0.55
22 5 0.25
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
ATATATTTTATAATTAAATTT
Found at i:1699208 original size:33 final size:32
Alignment explanation
Indices: 1699134--1699217 Score: 87
Period size: 33 Copynumber: 2.6 Consensus size: 32
1699124 TTAAAATTTA
* *
1699134 TAAAATAATATTTATTTTTAAAATTGTTAAAT
1 TAAAATAATATTTATATTTAAAATTATTAAAT
* * *
1699166 CAACTATAATATTTATATTTAATATTATTAAATT
1 TAA-AATAATATTTATATTTAAAATTATTAAA-T
* *
1699200 TAAAATAATTTTTTTATT
1 TAAAATAATATTTATATT
1699218 ATTATCTCAT
Statistics
Matches: 41, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
32 2 0.05
33 36 0.88
34 3 0.07
ACGTcount: A:0.44, C:0.02, G:0.01, T:0.52
Consensus pattern (32 bp):
TAAAATAATATTTATATTTAAAATTATTAAAT
Found at i:1699366 original size:18 final size:19
Alignment explanation
Indices: 1699338--1699373 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
1699328 AAAATATTGA
1699338 TAATATAACATCATATAAT
1 TAATATAACATCATATAAT
*
1699357 TAAT-TAACATTATATAA
1 TAATATAACATCATATAA
1699374 ATTTATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (19 bp):
TAATATAACATCATATAAT
Found at i:1699804 original size:27 final size:29
Alignment explanation
Indices: 1699767--1699833 Score: 93
Period size: 28 Copynumber: 2.4 Consensus size: 29
1699757 TTTTAATAAA
*
1699767 TTTAATATATT-AATATAATAATTTA-TT
1 TTTAATATATTAAAAATAATAATTTACTT
* *
1699794 TTTAATTTATTAAAAATAATATTTTACTT
1 TTTAATATATTAAAAATAATAATTTACTT
1699823 TTTAATATATT
1 TTTAATATATT
1699834 GGCAATATAG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 10 0.29
28 12 0.35
29 12 0.35
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (29 bp):
TTTAATATATTAAAAATAATAATTTACTT
Found at i:1700965 original size:16 final size:15
Alignment explanation
Indices: 1700941--1700999 Score: 57
Period size: 16 Copynumber: 3.8 Consensus size: 15
1700931 AGATTTGATA
1700941 ATTTA-TATATTTTT
1 ATTTATTATATTTTT
* *
1700955 ATTATATTATAATCTT
1 ATT-TATTATATTTTT
*
1700971 ATTTAATATATTTTAT
1 ATTTATTATATTTT-T
1700987 ATTTATATATATT
1 ATTTAT-TATATT
1701000 AATAATATGT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
14 3 0.09
15 10 0.29
16 16 0.46
17 6 0.17
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTTATTATATTTTT
Found at i:1700992 original size:20 final size:21
Alignment explanation
Indices: 1700942--1700992 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 21
1700932 GATTTGATAA
*
1700942 TTTATATATT-TTTATTATAT
1 TTTATATATTATTTAATATAT
* *
1700962 TATA-ATCTTATTTAATATAT
1 TTTATATATTATTTAATATAT
1700982 TTTATAT-TTAT
1 TTTATATATTAT
1700993 ATATATTAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 4 0.16
20 19 0.76
21 2 0.08
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTATATATTATTTAATATAT
Found at i:1701005 original size:38 final size:38
Alignment explanation
Indices: 1700933--1701005 Score: 96
Period size: 38 Copynumber: 1.9 Consensus size: 38
1700923 ACAAATTTAG
* *
1700933 ATTTGATAATTTATATATTTTTATTATATTATAATCTT
1 ATTTAATAATTTATATATTTATATTATATTATAATCTT
1700971 ATTTAATATATTT-TATATTTATA-TATATTAATAAT
1 ATTTAATA-ATTTATATATTTATATTATATT-ATAAT
1701006 ATGTATAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
37 6 0.19
38 21 0.68
39 4 0.13
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.59
Consensus pattern (38 bp):
ATTTAATAATTTATATATTTATATTATATTATAATCTT
Found at i:1701743 original size:33 final size:33
Alignment explanation
Indices: 1701679--1701744 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 33
1701669 AACCAAAAAA
*
1701679 AAAATACAAACATAATATTATTACATAAATATT
1 AAAATACAAACATAATATAATTACATAAATATT
*
1701712 AAAATATCAAA-ATATATATAATTATAT-AATATT
1 AAAATA-CAAACATA-ATATAATTACATAAATATT
1701745 TTAAACAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
33 15 0.52
34 14 0.48
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (33 bp):
AAAATACAAACATAATATAATTACATAAATATT
Found at i:1706732 original size:2 final size:2
Alignment explanation
Indices: 1706725--1706749 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1706715 TTAGGATAGG
1706725 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
1706750 CTTTTTTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1711118 original size:6 final size:6
Alignment explanation
Indices: 1711109--1711135 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
1711099 CTGGTGCTGG
1711109 TGCCGA TGCCGA TGCCGA TGCCGA TGC
1 TGCCGA TGCCGA TGCCGA TGCCGA TGC
1711136 TGGTGCAGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.33, G:0.33, T:0.19
Consensus pattern (6 bp):
TGCCGA
Found at i:1713323 original size:20 final size:20
Alignment explanation
Indices: 1713295--1713341 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
1713285 ATTTTTAAAT
*
1713295 TAATTAAAAAAGTAAAAAGA
1 TAATAAAAAAAGTAAAAAGA
* * *
1713315 TAATAAAAAAATTAAATATA
1 TAATAAAAAAAGTAAAAAGA
1713335 TAATAAA
1 TAATAAA
1713342 TTTATCTATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (20 bp):
TAATAAAAAAAGTAAAAAGA
Found at i:1713436 original size:17 final size:17
Alignment explanation
Indices: 1713416--1713449 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
1713406 AATATTTTTA
*
1713416 ATAATTTTTTAAAAAAT
1 ATAAATTTTTAAAAAAT
1713433 ATAAATTTTTAAAAAAT
1 ATAAATTTTTAAAAAAT
1713450 TAAGTAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
ATAAATTTTTAAAAAAT
Found at i:1714100 original size:19 final size:19
Alignment explanation
Indices: 1714076--1714120 Score: 90
Period size: 19 Copynumber: 2.4 Consensus size: 19
1714066 TTTATAAATA
1714076 TAAATATAAGATAAATTAT
1 TAAATATAAGATAAATTAT
1714095 TAAATATAAGATAAATTAT
1 TAAATATAAGATAAATTAT
1714114 TAAATAT
1 TAAATAT
1714121 TTTAAAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (19 bp):
TAAATATAAGATAAATTAT
Found at i:1714140 original size:23 final size:24
Alignment explanation
Indices: 1714114--1714161 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
1714104 GATAAATTAT
** *
1714114 TAAATATTTTAAA-ATTTTAAAAA
1 TAAATATAATAAATATTTAAAAAA
1714137 TAAATATAATAAATATTTAAAAAA
1 TAAATATAATAAATATTTAAAAAA
1714161 T
1 T
1714162 TATATTAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (24 bp):
TAAATATAATAAATATTTAAAAAA
Found at i:1714181 original size:18 final size:18
Alignment explanation
Indices: 1714160--1714206 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
1714150 TATTTAAAAA
*
1714160 ATTATAT-TAATTTTATTT
1 ATTATATATAA-TGTATTT
*
1714178 ATTAAATATAATGTATTT
1 ATTATATATAATGTATTT
1714196 ATATATATATA
1 AT-TATATATA
1714207 TAATATATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (18 bp):
ATTATATATAATGTATTT
Found at i:1714368 original size:2 final size:2
Alignment explanation
Indices: 1714361--1714404 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
1714351 TTCAAAGTGA
*
1714361 AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1714403 AT
1 AT
1714405 CTTTCAAACG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1719676 original size:20 final size:20
Alignment explanation
Indices: 1719626--1719703 Score: 65
Period size: 20 Copynumber: 4.0 Consensus size: 20
1719616 AATTTTTTTA
1719626 ATAATATTTTATTT-TTATTTT
1 ATAAT-TTTTATTTATTA-TTT
* **
1719647 AAAAAATTTATTTATTATTT
1 ATAATTTTTATTTATTATTT
*
1719667 ATAATTTTTA-TTAATATTT
1 ATAATTTTTATTTATTATTT
*
1719686 -T-ATTTTTATTTATAATTT
1 ATAATTTTTATTTATTATTT
1719704 TTAAAATTAT
Statistics
Matches: 46, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
17 7 0.15
18 8 0.17
19 8 0.17
20 17 0.37
21 6 0.13
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (20 bp):
ATAATTTTTATTTATTATTT
Found at i:1719750 original size:30 final size:29
Alignment explanation
Indices: 1719633--1719777 Score: 111
Period size: 30 Copynumber: 4.9 Consensus size: 29
1719623 TTAATAATAT
* *
1719633 TTTATTT-TTATTTTAAAAAATTTATTTA
1 TTTATTTATAATTTTAAAAATTTTATTTA
*
1719661 -TTATTTATAATTTTTATTAATATTTTA-TT-
1 TTTATTTATAA-TTTTA--AAAATTTTATTTA
* *
1719690 TTTATTTATAATTTTTAAAATTATATTTTA
1 TTTATTTATAATTTTAAAAATTTTA-TTTA
*
1719720 TTTATTTATAACTTTAAAAATTTATATTTA
1 TTTATTTATAATTTTAAAAATTT-TATTTA
* *
1719750 -TTGTTTAAAACCTTTTAAAAAATTTTAT
1 TTTATTTATAA--TTTT-AAAAATTTTAT
1719778 ATCTTTATGT
Statistics
Matches: 93, Mismatches: 12, Indels: 21
0.74 0.10 0.17
Matches are distributed among these distances:
27 13 0.14
28 2 0.02
29 19 0.20
30 36 0.39
31 15 0.16
32 8 0.09
ACGTcount: A:0.37, C:0.02, G:0.01, T:0.61
Consensus pattern (29 bp):
TTTATTTATAATTTTAAAAATTTTATTTA
Found at i:1719971 original size:20 final size:19
Alignment explanation
Indices: 1719943--1719982 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
1719933 TTTTATATTT
*
1719943 AATATAATTAATTTTATTGA
1 AATAAAATTAATTTT-TTGA
*
1719963 AATAAAATTTATTTTTTGA
1 AATAAAATTAATTTTTTGA
1719982 A
1 A
1719983 CAATTGATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (19 bp):
AATAAAATTAATTTTTTGA
Found at i:1720316 original size:21 final size:22
Alignment explanation
Indices: 1720285--1720347 Score: 78
Period size: 21 Copynumber: 3.0 Consensus size: 22
1720275 TAATATTTTT
1720285 TATTT-TTTAAATAAAAATAAA
1 TATTTATTTAAATAAAAATAAA
1720306 T-TTTATTTAAAT-AAAATAAA
1 TATTTATTTAAATAAAAATAAA
* *
1720326 TATTTTTTTCAAATATAAATAA
1 TATTTATTT-AAATAAAAATAA
1720348 TTGACATACA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
20 12 0.33
21 14 0.39
22 4 0.11
23 6 0.17
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (22 bp):
TATTTATTTAAATAAAAATAAA
Found at i:1720552 original size:46 final size:46
Alignment explanation
Indices: 1720497--1720587 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
1720487 ATTGATATGT
* *
1720497 TAAACTTTTAAAAGTTATGAATAAAAATAAAATATAAATTAAAAATG
1 TAAACTTTTAAAAGTAATAAATAAAAATAAAATATAAA-TAAAAATG
*
1720544 TAAA-TTTTAAAAGTAATAAATAAAAATAAAATATTAATAAAAAT
1 TAAACTTTTAAAAGTAATAAATAAAAATAAAATATAAATAAAAAT
1720588 TGTAGATGAT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
45 7 0.17
46 30 0.73
47 4 0.10
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (46 bp):
TAAACTTTTAAAAGTAATAAATAAAAATAAAATATAAATAAAAATG
Found at i:1723975 original size:12 final size:10
Alignment explanation
Indices: 1723949--1723975 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
1723939 TTGGAATATG
1723949 AATATATGAC
1 AATATATGAC
1723959 AATATATGAC
1 AATATATGAC
1723969 AATATAT
1 AATATAT
1723976 TCGATTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.33
Consensus pattern (10 bp):
AATATATGAC
Found at i:1726496 original size:15 final size:15
Alignment explanation
Indices: 1726476--1726509 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
1726466 TTTACACATG
1726476 ATTTATATTT-ATATA
1 ATTTATATTTGA-ATA
1726491 ATTTATATTTGAATA
1 ATTTATATTTGAATA
1726506 ATTT
1 ATTT
1726510 CTTAAATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 17 0.94
16 1 0.06
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (15 bp):
ATTTATATTTGAATA
Found at i:1726525 original size:30 final size:29
Alignment explanation
Indices: 1726489--1726565 Score: 100
Period size: 29 Copynumber: 2.6 Consensus size: 29
1726479 TATATTTATA
** **
1726489 TAATTTATATTTGAATAATTTCTTAAATTT
1 TAATTTATATTCAAATAA-TTAGTAAATTT
*
1726519 TAATTTATGTTCAAATAATTAGTAAATTT
1 TAATTTATATTCAAATAATTAGTAAATTT
1726548 TAATTTATATTCAAATAA
1 TAATTTATATTCAAATAA
1726566 ATTTTAACTT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
29 26 0.63
30 15 0.37
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.51
Consensus pattern (29 bp):
TAATTTATATTCAAATAATTAGTAAATTT
Found at i:1726579 original size:16 final size:16
Alignment explanation
Indices: 1726560--1726598 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
1726550 ATTTATATTC
1726560 AAATAAATTTTAACTT
1 AAATAAATTTTAACTT
* * *
1726576 AAATCAATTTTTATTT
1 AAATAAATTTTAACTT
1726592 AAATAAA
1 AAATAAA
1726599 AATTTATTTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (16 bp):
AAATAAATTTTAACTT
Found at i:1726604 original size:16 final size:16
Alignment explanation
Indices: 1726585--1726618 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
1726575 TAAATCAATT
1726585 TTTATTTAAATAAAAA
1 TTTATTTAAATAAAAA
*
1726601 TTTATTTAAATATAAA
1 TTTATTTAAATAAAAA
1726617 TT
1 TT
1726619 AAAAGATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TTTATTTAAATAAAAA
Found at i:1727692 original size:9 final size:9
Alignment explanation
Indices: 1727678--1727702 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
1727668 TAACATCCAA
1727678 AAAATAAAT
1 AAAATAAAT
1727687 AAAATAAAT
1 AAAATAAAT
1727696 AAAATAA
1 AAAATAA
1727703 TTTTGCGACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (9 bp):
AAAATAAAT
Found at i:1727782 original size:18 final size:18
Alignment explanation
Indices: 1727759--1727794 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
1727749 GACCCCCTGC
*
1727759 CGACGACAACGGCAACGA
1 CGACGACAACGACAACGA
*
1727777 CGACGACGACGACAACGA
1 CGACGACAACGACAACGA
1727795 ACGTGAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.39, C:0.33, G:0.28, T:0.00
Consensus pattern (18 bp):
CGACGACAACGACAACGA
Found at i:1728848 original size:2 final size:2
Alignment explanation
Indices: 1728841--1728874 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
1728831 CAAGTGTATG
*
1728841 AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1728875 GTATGTATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:1731258 original size:15 final size:15
Alignment explanation
Indices: 1731235--1731282 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
1731225 AATTTATCAA
*
1731235 TTAACAAAAATTATT
1 TTAAAAAAAATTATT
*
1731250 TTAAAAAAAATTTAAT
1 TTAAAAAAAA-TTATT
1731266 TTAAAAAATAATTATT
1 TTAAAAAA-AATTATT
1731282 T
1 T
1731283 AATCAATTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 9 0.32
16 17 0.61
17 2 0.07
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (15 bp):
TTAAAAAAAATTATT
Found at i:1731283 original size:15 final size:14
Alignment explanation
Indices: 1731235--1731284 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 14
1731225 AATTTATCAA
*
1731235 TTAACAAAAATTATT
1 TTAAAAAAAATTA-T
1731250 TTAAAAAAAATTTAAT
1 TTAAAAAAAA-TT-AT
1731266 TTAAAAAATAATTAT
1 TTAAAAAA-AATTAT
1731281 TTAA
1 TTAA
1731285 TCAATTAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
15 15 0.48
16 13 0.42
17 3 0.10
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (14 bp):
TTAAAAAAAATTAT
Found at i:1736791 original size:12 final size:12
Alignment explanation
Indices: 1736776--1736821 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
1736766 AGATGGGGTA
1736776 GAGGATGAGGAG
1 GAGGATGAGGAG
* *
1736788 GAGGATGATGAC
1 GAGGATGAGGAG
*
1736800 GAGGATGATGAG
1 GAGGATGAGGAG
*
1736812 GAGGAAGAGG
1 GAGGATGAGG
1736822 TAGATAATGA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.35, C:0.02, G:0.52, T:0.11
Consensus pattern (12 bp):
GAGGATGAGGAG
Found at i:1753093 original size:6 final size:6
Alignment explanation
Indices: 1753084--1753109 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
1753074 AGATCATGAG
1753084 AGAGAC AGAGAC AGAGAC AGAGAC AG
1 AGAGAC AGAGAC AGAGAC AGAGAC AG
1753110 GGATTATGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.15, G:0.35, T:0.00
Consensus pattern (6 bp):
AGAGAC
Found at i:1753650 original size:14 final size:14
Alignment explanation
Indices: 1753622--1753652 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
1753612 TATCTCTGCA
1753622 TTTTATTTTATTTT
1 TTTTATTTTATTTT
1753636 TTTTACTTTTATTTT
1 TTTTA-TTTTATTTT
1753651 TT
1 TT
1753653 CTTAAAGACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTTATTTTATTTT
Found at i:1762101 original size:23 final size:23
Alignment explanation
Indices: 1762054--1762101 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
1762044 CACATATTTA
* ** *
1762054 ATTATATTTATATTTTTTATTAT
1 ATTATAATTATATTTTAAATAAT
1762077 ATTATAATTATATTTTAAATAAT
1 ATTATAATTATATTTTAAATAAT
1762100 AT
1 AT
1762102 ATTATTTTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (23 bp):
ATTATAATTATATTTTAAATAAT
Found at i:1762132 original size:32 final size:32
Alignment explanation
Indices: 1762092--1762176 Score: 84
Period size: 32 Copynumber: 2.6 Consensus size: 32
1762082 AATTATATTT
*
1762092 TAAA-TAATATATTATTTTTTATAAATTTTAA
1 TAAATTAATATATTATTTTTTATAAATATTAA
* * *
1762123 TAAATTAATATTTTATATTATATAAATATTAA
1 TAAATTAATATATTATTTTTTATAAATATTAA
*
1762155 -AATATTTATTTATATTATTTTT
1 TAA-A-TTA-ATATATTATTTTT
1762177 ATATTATTTT
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
31 6 0.14
32 24 0.57
33 3 0.07
34 9 0.21
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (32 bp):
TAAATTAATATATTATTTTTTATAAATATTAA
Found at i:1762198 original size:13 final size:11
Alignment explanation
Indices: 1762163--1762190 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
1762153 AAAATATTTA
1762163 TTTATATTATT
1 TTTATATTATT
1762174 TTTATATTATT
1 TTTATATTATT
1762185 TTTATA
1 TTTATA
1762191 CCTTATTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
TTTATATTATT
Found at i:1762525 original size:18 final size:17
Alignment explanation
Indices: 1762502--1762535 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
1762492 TATAAATAAC
1762502 AAATAAAAATATTTAAAA
1 AAATAAAAA-ATTTAAAA
1762520 AAATAAAAAATTTAAA
1 AAATAAAAAATTTAAA
1762536 GAATTTAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (17 bp):
AAATAAAAAATTTAAAA
Found at i:1762527 original size:17 final size:18
Alignment explanation
Indices: 1762502--1762535 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
1762492 TATAAATAAC
*
1762502 AAATAAAAATATTTAAAA
1 AAATAAAAAAATTTAAAA
1762520 AAAT-AAAAAATTTAAA
1 AAATAAAAAAATTTAAA
1762536 GAATTTAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (18 bp):
AAATAAAAAAATTTAAAA
Found at i:1764290 original size:15 final size:13
Alignment explanation
Indices: 1764260--1764284 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1764250 TACTTATTAT
1764260 TTTATAAATTTTA
1 TTTATAAATTTTA
1764273 TTTATAAATTTT
1 TTTATAAATTTT
1764285 TTATTTTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TTTATAAATTTTA
Found at i:1764350 original size:22 final size:19
Alignment explanation
Indices: 1764304--1764339 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
1764294 TATTAATATA
1764304 TAAAATAATTATATATAAT
1 TAAAATAATTATATATAAT
1764323 TAAAAT-ATTATATATAA
1 TAAAATAATTATATATAA
1764340 ATTATGAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
TAAAATAATTATATATAAT
Found at i:1766149 original size:11 final size:11
Alignment explanation
Indices: 1766133--1766187 Score: 53
Period size: 11 Copynumber: 5.0 Consensus size: 11
1766123 AATAGGGTAC
1766133 AAAATAATATA
1 AAAATAATATA
1766144 AAAATAAT-TA
1 AAAATAATATA
1766154 AATAA-AA-ATA
1 AA-AATAATATA
1766164 AAAATATATTATA
1 AAAATA-A-TATA
*
1766177 AAAGTAATATA
1 AAAATAATATA
1766188 TTATATTAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
9 2 0.05
10 11 0.30
11 15 0.41
12 1 0.03
13 8 0.22
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (11 bp):
AAAATAATATA
Found at i:1766564 original size:4 final size:4
Alignment explanation
Indices: 1766551--1766593 Score: 52
Period size: 4 Copynumber: 10.2 Consensus size: 4
1766541 TTATATATTC
1766551 ATAA AT-A ATAA ATAAA ATAA ATTTAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA AT-AA ATAA A--TAA ATAA ATAA ATAA ATAA A
1766594 ATTATTAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
3 3 0.09
4 24 0.69
5 4 0.11
6 4 0.11
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (4 bp):
ATAA
Found at i:1766596 original size:23 final size:22
Alignment explanation
Indices: 1766552--1766593 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
1766542 TATATATTCA
1766552 TAAATAATAAATAAAATAAATT
1 TAAATAATAAATAAAATAAATT
1766574 TAAATAAATAAAT-AAATAAA
1 TAAAT-AATAAATAAAATAAA
1766594 ATTATTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (22 bp):
TAAATAATAAATAAAATAAATT
Found at i:1771322 original size:2 final size:2
Alignment explanation
Indices: 1771315--1771359 Score: 63
Period size: 2 Copynumber: 22.5 Consensus size: 2
1771305 CTATGATAAG
* * *
1771315 TC TC TC TC CC TC TC CC TC TC CC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1771357 TC T
1 TC T
1771360 ATATATATAT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (2 bp):
TC
Found at i:1771359 original size:12 final size:12
Alignment explanation
Indices: 1771315--1771358 Score: 70
Period size: 12 Copynumber: 3.7 Consensus size: 12
1771305 CTATGATAAG
1771315 TCTCTCTCCCTC
1 TCTCTCTCCCTC
*
1771327 TCCCTCTCCCTC
1 TCTCTCTCCCTC
*
1771339 TCTCTCTCTCTC
1 TCTCTCTCCCTC
1771351 TCTCTCTC
1 TCTCTCTC
1771359 TATATATATA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.00, C:0.57, G:0.00, T:0.43
Consensus pattern (12 bp):
TCTCTCTCCCTC
Found at i:1771364 original size:2 final size:2
Alignment explanation
Indices: 1771359--1771389 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1771349 TCTCTCTCTC
1771359 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1771390 GTAAATCAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1772793 original size:21 final size:21
Alignment explanation
Indices: 1772771--1772815 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
1772761 TTAGTTGCAA
1772771 TTTTATATATAATTACAATAAT
1 TTTTA-ATATAATTACAATAAT
**
1772793 TTTTAATATAATTTTAATAAT
1 TTTTAATATAATTACAATAAT
1772814 TT
1 TT
1772816 ATAAAAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (21 bp):
TTTTAATATAATTACAATAAT
Found at i:1772829 original size:21 final size:21
Alignment explanation
Indices: 1772787--1772829 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
1772777 ATATAATTAC
* *
1772787 AATAATTTTTAATATAATTTT
1 AATAATTTATAATAAAATTTT
1772808 AATAATTTATAA-AAAATATTT
1 AATAATTTATAATAAAAT-TTT
1772829 A
1 A
1772830 TTTTAGTGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
AATAATTTATAATAAAATTTT
Found at i:1773675 original size:25 final size:25
Alignment explanation
Indices: 1773645--1773718 Score: 87
Period size: 25 Copynumber: 2.9 Consensus size: 25
1773635 ATTTAAAGTT
* *
1773645 TAAATTTTAAAATATATAATT-TTA
1 TAAATTTTAAAATATAAAATTATGA
1773669 TATAATTTTAAAATATAAAATTATGA
1 TA-AATTTTAAAATATAAAATTATGA
* *
1773695 TAAATTTTAATAATTTAAATTTAT
1 TAAATTTTAA-AATATAAAATTAT
1773719 TTATTTATTA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
24 2 0.05
25 26 0.60
26 15 0.35
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (25 bp):
TAAATTTTAAAATATAAAATTATGA
Found at i:1775121 original size:2 final size:2
Alignment explanation
Indices: 1775116--1775149 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
1775106 TGTCAAAAAA
1775116 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1775150 GCTGAAAAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1775504 original size:46 final size:48
Alignment explanation
Indices: 1775449--1775539 Score: 118
Period size: 46 Copynumber: 1.9 Consensus size: 48
1775439 GAAATTAAAA
1775449 TTTTTAATTTAAATTAATATT-T-AATAATAA-AAAATATTT-AAATATT
1 TTTTTAATTTAAATTAAT-TTATGAATAATAATAAAA-ATTTCAAATATT
**
1775495 TTTTTAATTTTTATTAATTTATGAATAATAATAAAAATTTCAAAT
1 TTTTTAATTTAAATTAATTTATGAATAATAATAAAAATTTCAAAT
1775540 TATATAAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
45 2 0.05
46 17 0.44
47 12 0.31
48 8 0.21
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (48 bp):
TTTTTAATTTAAATTAATTTATGAATAATAATAAAAATTTCAAATATT
Found at i:1777384 original size:65 final size:67
Alignment explanation
Indices: 1777273--1777402 Score: 219
Period size: 65 Copynumber: 2.0 Consensus size: 67
1777263 GAGTTTGAAG
*
1777273 CTTGTTTAAATCAGTTTTTGGGCATCTTAAATCTCAATATACAATTAAATTTTGATGATTCTGAA
1 CTTGTTTAAATCAGTTTTTGGGCATCTGAAATCTCAATATACAATTAAATTTTGATGATTCTGAA
1777338 TT
66 TT
* *
1777340 CTTGTTTAAATCAG-TTTTGGG-GTCTGAAATCTCAATATTCAATTAAATTTTGATGATTCTGAA
1 CTTGTTTAAATCAGTTTTTGGGCATCTGAAATCTCAATATACAATTAAATTTTGATGATTCTGAA
1777403 ACTTGATAAT
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
65 39 0.65
66 7 0.12
67 14 0.23
ACGTcount: A:0.31, C:0.12, G:0.14, T:0.44
Consensus pattern (67 bp):
CTTGTTTAAATCAGTTTTTGGGCATCTGAAATCTCAATATACAATTAAATTTTGATGATTCTGAA
TT
Found at i:1779319 original size:18 final size:18
Alignment explanation
Indices: 1779296--1779341 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 18
1779286 TTTGGATATT
1779296 AATATAAAAA-ATAATTAA
1 AATATAAAAAGATAA-TAA
1779314 AATATAATAAAGTATAATAA
1 AATATAA-AAAG-ATAATAA
1779334 AAT-TAAAA
1 AATATAAAA
1779342 TAAAATTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
18 9 0.36
19 6 0.24
20 6 0.24
21 4 0.16
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (18 bp):
AATATAAAAAGATAATAA
Found at i:1779324 original size:10 final size:10
Alignment explanation
Indices: 1779296--1779360 Score: 55
Period size: 10 Copynumber: 6.6 Consensus size: 10
1779286 TTTGGATATT
1779296 AATATAA-AA
1 AATATAATAA
*
1779305 AATA-ATTAA
1 AATATAATAA
1779314 AATATAATAA
1 AATATAATAA
*
1779324 AGTATAATAA
1 AATATAATAA
*
1779334 AATTAAAATAA
1 AA-TATAATAA
*
1779345 AAT-TTATAAA
1 AATATAAT-AA
1779355 AATATA
1 AATATA
1779361 TAATTATATT
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
8 1 0.02
9 12 0.28
10 20 0.47
11 10 0.23
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.31
Consensus pattern (10 bp):
AATATAATAA
Found at i:1779330 original size:21 final size:21
Alignment explanation
Indices: 1779306--1779345 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
1779296 AATATAAAAA
*
1779306 ATAATTAAAA-TATAATAAAGT
1 ATAA-TAAAATTAAAATAAAGT
1779327 ATAATAAAATTAAAATAAA
1 ATAATAAAATTAAAATAAA
1779346 ATTTATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (21 bp):
ATAATAAAATTAAAATAAAGT
Found at i:1779411 original size:17 final size:17
Alignment explanation
Indices: 1779335--1779414 Score: 62
Period size: 17 Copynumber: 4.8 Consensus size: 17
1779325 GTATAATAAA
1779335 ATTAAAA-TAA-AATTT
1 ATTAAAATTAATAATTT
*
1779350 A-TAAAAATATATAATTAT
1 ATTAAAATTA-ATAATT-T
*
1779368 ATTAAAAATT-AT-ATAT
1 ATT-AAAATTAATAATTT
*
1779384 AATATAAATTAATAATTT
1 ATTA-AAATTAATAATTT
1779402 ATTAAAATTAATA
1 ATTAAAATTAATA
1779415 TAAATATATA
Statistics
Matches: 51, Mismatches: 5, Indels: 16
0.71 0.07 0.22
Matches are distributed among these distances:
14 5 0.10
15 4 0.08
16 9 0.18
17 17 0.33
18 10 0.20
19 1 0.02
20 5 0.10
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATTAAAATTAATAATTT
Found at i:1779425 original size:27 final size:28
Alignment explanation
Indices: 1779378--1779439 Score: 76
Period size: 27 Copynumber: 2.2 Consensus size: 28
1779368 ATTAAAAATT
1779378 ATATATAATATAAATTAATAAT-TTATTAA
1 ATAT-TAATATAAATTAATAATATT-TTAA
1779407 A-ATTAATATAAA-TATATAATATTTTAA
1 ATATTAATATAAATTA-ATAATATTTTAA
1779434 ATATTA
1 ATATTA
1779440 CGATAATTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
26 2 0.07
27 19 0.63
28 8 0.27
29 1 0.03
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (28 bp):
ATATTAATATAAATTAATAATATTTTAA
Found at i:1788033 original size:2 final size:2
Alignment explanation
Indices: 1788026--1788053 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1788016 TGGAAGTATC
1788026 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1788054 CACACACACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1788864 original size:19 final size:20
Alignment explanation
Indices: 1788841--1788887 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
1788831 TAAAAAATAA
1788841 ATTTAATTTTAATAATATAT
1 ATTTAATTTTAATAATATAT
* * *
1788861 -TTTAAATTTAATTATTTAT
1 ATTTAATTTTAATAATATAT
1788880 ATTTAATT
1 ATTTAATT
1788888 ATAAATTAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
ATTTAATTTTAATAATATAT
Found at i:1790239 original size:2 final size:2
Alignment explanation
Indices: 1790234--1790273 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
1790224 ACACACACAC
1790234 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1790274 TGGATTTTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1792725 original size:2 final size:2
Alignment explanation
Indices: 1792718--1792752 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
1792708 ATCTAAGTGA
1792718 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1792753 GTGTGTGTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:1793710 original size:21 final size:20
Alignment explanation
Indices: 1793663--1793710 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
1793653 GAAAATAATG
* *
1793663 ATAATAATTTAATACATTAT
1 ATAATAAATTAATACATTAA
*
1793683 ATAAATAAATTAATGATATTAA
1 AT-AATAAATTAAT-ACATTAA
1793705 ATAATA
1 ATAATA
1793711 TAAAATTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 2 0.09
21 14 0.61
22 7 0.30
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (20 bp):
ATAATAAATTAATACATTAA
Found at i:1793860 original size:13 final size:13
Alignment explanation
Indices: 1793844--1793881 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
1793834 TTAATATTTG
1793844 AATTTTATAATAT
1 AATTTTATAATAT
* *
1793857 AATTTTTTAATTT
1 AATTTTATAATAT
1793870 AATTTTATAATA
1 AATTTTATAATA
1793882 ATTACTTAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (13 bp):
AATTTTATAATAT
Found at i:1794651 original size:3 final size:3
Alignment explanation
Indices: 1794643--1794674 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
1794633 AATACTAAAG
*
1794643 ATA ATA ATA ATA ATA ATA ATA AGA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1794675 TATTATTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:1795380 original size:2 final size:2
Alignment explanation
Indices: 1795373--1795413 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
1795363 ATTTGGATTA
1795373 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1795414 AATTTGTATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1797321 original size:2 final size:2
Alignment explanation
Indices: 1797314--1797354 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
1797304 AAACATAAAA
* * *
1797314 AG AG AG AG AG AG AG AG AG AG AG AG AG AA AG CG AT AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1797355 AGAAAAGGAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.02, G:0.44, T:0.02
Consensus pattern (2 bp):
AG
Found at i:1809757 original size:15 final size:16
Alignment explanation
Indices: 1809725--1809758 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
1809715 TTAATTACAC
1809725 TTATTTTATATAAATA
1 TTATTTTATATAAATA
*
1809741 TTATTTTA-ATCAATA
1 TTATTTTATATAAATA
1809756 TTA
1 TTA
1809759 CTAGAGATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (16 bp):
TTATTTTATATAAATA
Found at i:1820335 original size:26 final size:26
Alignment explanation
Indices: 1820301--1820364 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 26
1820291 TTAAATATTT
1820301 AAATATTTAATTTAATTAATTAATTAA
1 AAATATTTAATTTAATTAA-TAATTAA
* *
1820328 AAAT-TTTATTTTAATTAATATTTAA
1 AAATATTTAATTTAATTAATAATTAA
1820353 AATTATATTTAA
1 AA--ATATTTAA
1820365 ATTTTATCAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
25 8 0.26
26 13 0.42
27 6 0.19
28 4 0.13
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (26 bp):
AAATATTTAATTTAATTAATAATTAA
Done.