genome.fa.s2103.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2103
Parameters: 2 7 7 80 10 50 1000
Length:  74528

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3398--3475	20	3.6	20	74	17	75	25	15	15	43	1.86
3464--3501	13	2.9	13	96	0	67	34	18	15	31	1.92
5926--5998	20	3.6	20	81	3	101	35	13	19	31	1.91
5944--6019	21	3.7	21	80	3	100	42	11	17	28	1.84
5926--6019	41	2.3	41	98	0	179	39	12	18	29	1.88
6058--6083	13	2.0	13	100	0	52	38	15	15	30	1.88
8567--8616	21	2.4	21	83	9	59	48	0	20	32	1.50
8574--8616	21	2.0	22	86	4	61	51	0	20	27	1.48
12458--12606	52	2.9	51	88	4	226	30	16	18	33	1.94
12595--12619	13	1.9	13	100	0	50	36	16	16	32	1.90
12660--12726	33	2.0	33	88	0	98	40	14	11	32	1.83
12682--12706	13	1.9	13	100	0	50	32	16	16	36	1.90
17182--17207	13	2.0	13	100	0	52	30	15	15	38	1.88
17246--17321	21	3.7	21	80	3	100	28	17	11	42	1.84
17267--17339	20	3.6	20	81	3	101	31	19	13	35	1.91
17246--17339	41	2.3	41	98	0	179	29	18	12	39	1.88
19765--19802	13	2.9	13	96	0	67	31	15	18	34	1.92
19791--19867	20	3.6	20	77	16	73	42	15	15	25	1.86
23661--23705	21	2.1	21	84	8	56	22	20	4	53	1.63
25918--25943	13	2.0	13	100	0	52	30	15	15	38	1.88
25982--26057	21	3.7	21	80	3	100	28	17	11	42	1.84
26003--26075	20	3.6	20	81	3	101	31	19	13	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25982--26075	41	2.3	41	98	0	179	29	18	12	39	1.88
28984--29079	48	2.0	48	87	0	138	35	27	12	25	1.92
30958--31156	56	3.4	57	74	10	168	44	16	9	29	1.79
30953--31190	119	2.0	122	82	8	299	42	15	11	29	1.82
33136--33174	20	2.0	20	89	0	60	35	10	17	35	1.84
34867--34932	33	2.0	33	85	5	89	43	13	13	28	1.82
37822--37846	13	1.9	13	100	0	50	36	16	16	32	1.90
37802--37868	33	2.0	33	88	0	98	32	11	14	40	1.83
37943--38071	52	2.5	52	92	0	204	34	17	16	31	1.92
44790--44937	80	1.9	80	81	8	185	32	15	26	25	1.95
44752--45083	133	2.5	131	87	2	452	34	14	25	26	1.94
45007--45122	51	2.3	51	84	0	142	31	12	25	31	1.92
45059--45339	109	2.6	107	81	6	332	33	16	23	26	1.95
57256--57316	1	61.0	1	76	0	59	88	9	1	0	0.58
57256--57305	10	5.0	10	90	7	75	90	10	0	0	0.47
58391--58642	55	4.4	55	78	10	238	28	28	19	23	1.98
58412--58641	60	3.9	59	81	11	251	27	28	19	24	1.98
58447--58851	215	1.9	214	84	4	546	26	27	19	27	1.99
58683--58976	61	4.9	61	87	4	375	24	25	21	28	1.99
59463--59649	102	1.8	102	82	4	243	28	26	11	33	1.91
59632--59705	28	2.6	28	87	4	96	21	31	21	25	1.98
60858--60969	52	2.2	52	82	7	133	32	16	25	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60899--61047	80	1.9	79	81	8	185	32	16	25	25	1.96
60858--61261	132	3.1	129	85	4	492	32	14	25	26	1.95
61115--61230	51	2.3	51	92	0	187	30	12	24	32	1.93
61322--61395	28	2.6	28	85	10	98	24	21	32	21	1.98
61378--61564	102	1.8	102	85	4	261	35	11	24	28	1.91
63829--63935	20	5.7	20	76	18	88	41	14	15	28	1.87
63849--63920	33	2.2	33	94	0	126	40	16	16	26	1.90
63868--63898	13	2.4	13	94	0	53	38	19	16	25	1.92
63829--64008	20	8.8	20	69	23	83	38	15	16	30	1.89
67883--68367	32	15.1	32	84	5	534	22	18	29	28	1.98
67880--68349	64	7.3	64	87	3	626	22	19	29	27	1.98
68789--68846	27	2.1	27	90	0	89	37	12	27	22	1.89
68817--69016	32	6.2	31	75	11	134	37	11	31	20	1.87
69010--69068	30	2.0	29	93	3	100	32	16	28	22	1.96

Tables:   1

The End!