Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2105
Parameters: 2 7 7 80 10 50 1000
Length:  39545

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1155--1205
23
2.2
23
86
6
68
0
27
17
54
1.43
1226--1290
24
2.7
23
76
4
67
0
29
18
52
1.46
1270--1329
27
2.1
28
81
6
68
0
31
16
51
1.45
1277--1340
27
2.4
25
78
16
67
0
31
17
51
1.45
2826--2879
1
54.0
1
81
0
63
0
3
5
90
0.53
2822--2879
19
3.0
19
84
2
80
0
5
5
89
0.58
9059--9121
32
1.9
34
84
12
87
0
33
4
61
1.17
10188--10244
30
1.9
30
89
7
89
0
35
5
59
1.20
11387--11430
13
3.3
13
83
3
52
0
25
2
72
0.96
12744--12789
22
2.1
22
84
8
58
0
63
4
32
1.14
13914--13953
21
1.9
21
84
0
53
2
55
12
30
1.50
14013--14056
19
2.2
20
84
8
54
0
52
4
43
1.22
15872--15900
14
2.0
15
93
6
51
0
68
0
31
0.89
16763--16804
21
2.0
21
85
0
57
0
40
19
40
1.51
17057--17095
16
2.4
16
84
12
53
0
17
7
74
1.05
17057--17095
15
2.5
15
87
8
51
0
17
7
74
1.05
17894--17932
21
1.9
20
84
5
51
0
33
25
41
1.56
18192--18230
19
2.0
20
95
5
71
0
46
0
53
1.00
19761--19800
17
2.4
16
84
8
53
0
52
0
47
1.00
19767--19800
17
2.0
17
94
0
59
0
50
0
50
1.00
20121--20154
1
34.0
1
87
0
50
0
94
2
2
0.38
20768--21054
153
1.9
153
84
4
391
24
18
20
36
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22192--22461
139
1.9
137
80
8
305
25
20
15
38
1.92
23217--23805
155
3.9
149
79
7
539
22
16
22
37
1.93
24624--25245
150
4.1
153
78
7
511
23
17
22
37
1.94
24572--25228
154
4.3
153
78
6
462
23
17
21
37
1.94
26030--26636
150
4.0
152
78
8
495
23
16
21
38
1.93
25977--26652
155
4.4
153
77
9
572
23
17
21
38
1.93
27427--27990
155
3.7
155
77
8
542
22
16
21
38
1.92
27433--28062
155
4.1
151
78
7
468
23
16
21
38
1.92
28945--29289
150
2.3
150
80
6
381
24
14
21
39
1.91
32720--32863
57
2.5
56
74
14
141
21
14
15
48
1.80
32888--33027
58
2.4
58
80
7
151
27
17
13
41
1.87
33352--33806
76
6.0
76
72
9
291
32
14
19
33
1.92
33356--33726
153
2.4
150
79
7
365
31
15
19
33
1.92

Tables:   1

The End!