Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold2107

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15734
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33


Found at i:5308 original size:7 final size:7

Alignment explanation


    Indices: 5296--5322  Score: 54
    Period size: 7  Copynumber: 3.9  Consensus size: 7

       5286 AATGGTGTAA

                   
       5296 TTTTTAT
          1 TTTTTAT

                   
       5303 TTTTTAT
          1 TTTTTAT

                   
       5310 TTTTTAT
          1 TTTTTAT

                  
       5317 TTTTTA
          1 TTTTTA

       5323 AATGAAAATG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   20  1.00

ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85


Consensus pattern (7 bp):   
TTTTTAT

Found at i:6115 original size:3 final size:3

Alignment explanation


    Indices: 6107--6135  Score: 58
    Period size: 3  Copynumber: 9.7  Consensus size: 3

       6097 AATCATTAAA

                                                  
       6107 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
          1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA

       6136 CCTCATCTAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   26  1.00

ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66


Consensus pattern (3 bp):   
TAT

Done.