Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2108
Parameters: 2 7 7 80 10 50 1000
Length:  86603

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6535--6569
18
1.9
18
94
0
61
65
8
5
20
1.40
11964--12016
16
3.3
15
73
17
52
11
7
3
77
1.10
12538--12589
27
2.0
27
84
3
70
28
1
3
65
1.21
15173--15209
19
1.9
19
88
0
56
51
18
13
16
1.76
15987--16020
16
2.0
16
88
11
50
32
0
0
67
0.91
16178--16219
22
1.9
22
85
0
57
38
0
0
61
0.96
16976--17020
2
22.5
2
100
0
90
48
0
0
51
1.00
17196--17227
2
16.0
2
100
0
64
50
0
0
50
1.00
17404--17456
21
2.5
20
79
14
54
52
0
0
47
1.00
17417--17455
20
1.9
21
94
5
71
53
0
0
46
1.00
17756--17794
19
2.1
19
90
0
60
46
0
2
51
1.14
18096--18149
17
3.3
16
76
10
56
51
0
0
48
1.00
18178--18224
7
6.7
7
90
9
69
74
0
2
23
0.93
18191--18230
21
1.9
21
89
0
62
77
0
0
22
0.77
18431--18481
20
2.4
21
81
15
61
45
0
0
54
0.99
18460--18508
19
2.6
19
70
0
53
48
0
0
51
1.00
19023--19060
18
2.2
17
90
4
58
36
0
5
57
1.21
21362--21397
2
18.0
2
94
0
63
50
2
0
47
1.15
25704--25761
19
3.1
18
82
9
62
53
0
0
46
1.00
25779--25820
22
1.9
22
90
9
68
38
0
0
61
0.96
28529--28864
182
1.8
184
85
3
473
31
19
19
29
1.96
34623--34709
33
2.6
33
83
7
95
56
0
0
43
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34653--34697
19
2.3
20
80
3
56
57
0
0
42
0.98
34645--34700
14
3.4
17
71
28
57
57
0
0
42
0.99
34648--34713
18
3.7
19
68
22
54
56
0
0
43
0.99
34930--34977
19
2.5
19
82
0
69
41
0
0
58
0.98
34949--34992
24
1.9
22
86
9
61
38
0
0
61
0.96
35034--35071
15
2.5
15
87
8
51
68
0
0
31
0.90
35535--35566
16
2.0
16
93
0
55
75
0
3
21
0.95
36149--36202
25
2.2
24
86
3
72
44
0
0
55
0.99
36160--36219
15
3.9
15
68
12
50
43
0
0
56
0.99
36160--36223
24
2.8
24
73
4
69
45
0
0
54
0.99
36181--36254
15
5.1
15
69
20
50
52
2
0
44
1.15
37329--37386
17
3.7
14
80
15
53
70
5
0
24
1.07
37329--37375
14
3.1
15
82
14
53
72
6
0
21
1.07
37347--37393
13
3.6
13
78
16
53
70
0
2
27
0.99
37344--37400
26
2.2
24
82
11
69
71
0
1
26
0.95
37737--37773
2
19.0
2
84
15
51
48
0
2
48
1.15
37737--37773
11
3.2
12
85
14
51
48
0
2
48
1.15
39534--39595
21
3.0
20
86
6
72
54
0
3
41
1.16
40005--40050
23
2.0
23
86
0
65
54
0
0
45
0.99
40013--40080
23
3.2
23
80
14
74
51
0
0
48
1.00
40013--40065
22
2.4
24
81
15
69
52
0
0
47
1.00
42541--42608
10
6.7
10
68
15
50
39
0
0
60
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42538--42598
18
3.2
18
76
17
61
42
0
0
57
0.98
42556--42641
11
7.9
11
72
14
54
41
1
0
56
1.06
42545--42663
16
7.1
17
67
20
63
38
1
0
59
1.07
42603--42641
5
7.4
5
83
11
51
38
2
0
58
1.12
42580--42664
22
3.6
23
76
14
84
36
2
0
61
1.09
42995--43022
14
2.0
14
100
0
56
64
0
0
35
0.94
44062--44307
97
2.5
97
84
3
327
30
12
28
28
1.93
45909--45969
23
2.6
22
80
14
61
3
22
1
72
1.09
45908--45972
11
5.6
11
73
8
58
3
21
1
73
1.05
46529--46872
168
2.1
167
82
7
412
50
6
10
31
1.63
47671--47712
22
2.0
22
86
9
61
64
2
0
33
1.07
50693--50725
14
2.4
14
100
0
66
51
6
0
42
1.26
51096--51151
8
6.6
9
80
8
55
1
17
0
80
0.80
51099--51152
23
2.5
22
73
26
53
1
18
0
79
0.82
51104--51151
17
2.8
17
74
0
51
2
18
0
79
0.84
52371--52876
32
15.8
32
94
0
816
16
18
33
31
1.93
52859--53269
137
3.0
136
88
2
617
29
13
32
23
1.93
52862--53269
164
2.5
164
92
1
665
29
13
32
23
1.94
52859--53269
27
15.0
27
89
2
588
29
13
32
23
1.93
54318--54342
13
1.9
13
100
0
50
0
0
16
84
0.63
54605--54679
36
2.1
35
85
7
98
6
12
9
72
1.29
60665--60701
2
18.5
2
88
0
56
51
5
0
43
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60665--60701
16
2.3
16
100
0
74
51
5
0
43
1.24
61066--61096
10
3.1
10
95
0
53
0
12
0
87
0.55
61066--61123
24
2.7
21
80
17
66
1
18
0
79
0.82
62021--62092
38
1.9
38
82
2
92
65
2
5
26
1.28
62078--62113
17
2.1
17
90
10
56
63
2
0
33
1.08
62611--62639
9
3.3
9
95
4
51
20
0
0
79
0.74
69132--69159
8
3.5
8
100
0
56
89
0
0
10
0.49
78110--78137
1
28.0
1
100
0
56
100
0
0
0
0.00
81055--81112
28
2.1
28
93
0
98
31
13
10
44
1.78
83626--83662
2
18.5
2
100
0
74
51
48
0
0
1.00
86124--86179
22
2.5
22
82
8
60
64
0
0
35
0.94
86214--86270
17
3.6
16
76
23
59
47
0
0
52
1.00
86214--86278
32
2.1
30
83
13
78
47
1
0
50
1.10

Tables:   1

The End!