Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold2109

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2022
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32


Found at i:290 original size:21 final size:21

Alignment explanation


    Indices: 249--290  Score: 50
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        239 TCGAAAAAAA

                    *            
        249 AAAAAAGAGAAAGGGGCTTTC
          1 AAAAAAGACAAAGGGGCTTTC

                             *    
        270 AAAAAA-ACAAAGTGGGTTTTC
          1 AAAAAAGACAAAG-GGGCTTTC

        291 CGATTGAGGG


Statistics
Matches: 18,  Mismatches: 2, Indels: 2
        0.82            0.09        0.09

Matches are distributed among these distances:
  20    5  0.28
  21   13  0.72

ACGTcount: A:0.48, C:0.10, G:0.24, T:0.19


Consensus pattern (21 bp):   
AAAAAAGACAAAGGGGCTTTC
Done.