Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2111
Parameters: 2 7 7 80 10 50 1000
Length:  32467

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2516--2567
22
2.3
23
77
9
63
59
0
0
40
0.97
2516--2578
18
3.5
19
75
18
55
57
1
0
41
1.08
2792--2861
16
4.4
16
78
7
72
50
1
8
40
1.42
2792--2875
32
2.7
32
83
1
89
51
3
8
36
1.50
2951--3001
16
3.2
16
73
18
52
54
3
0
41
1.19
3502--3561
27
2.1
30
82
14
74
48
0
1
50
1.11
3625--3673
17
2.8
18
75
12
57
55
0
0
44
0.99
7993--8038
19
2.4
19
82
10
58
60
0
0
39
0.97
12925--12962
20
1.9
20
88
0
58
89
5
5
0
0.59
13270--13322
27
2.0
27
84
0
70
33
0
1
64
1.05
13335--13380
16
2.9
16
81
12
58
56
0
0
43
0.99
13338--13382
7
5.8
8
80
19
51
55
0
0
44
0.99
13336--13377
17
2.6
16
88
7
59
52
0
0
47
1.00
14027--14074
19
2.6
19
77
6
55
37
0
2
60
1.09
14367--14440
14
5.3
14
72
16
64
70
2
0
27
1.01
14297--14428
69
1.9
69
80
6
151
60
1
2
35
1.18
14364--14481
19
6.3
19
73
6
98
65
1
0
33
1.03
14351--14486
14
9.9
14
66
19
56
63
1
0
35
1.04
18187--18228
18
2.2
20
83
8
52
61
0
4
33
1.17
18581--18613
2
16.5
2
100
0
66
51
0
0
48
1.00
18909--18950
14
3.1
14
80
10
52
61
2
0
35
1.09
19332--19372
20
2.1
20
90
4
66
36
7
0
56
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20624--20657
17
2.0
17
88
0
50
41
0
8
50
1.34
20870--20937
18
3.8
17
74
21
52
61
1
1
35
1.14
20890--20947
27
2.1
28
81
9
66
58
0
3
37
1.15
20867--20929
31
2.0
30
82
11
74
61
1
1
34
1.15
20872--20937
17
3.9
17
72
23
59
60
1
1
36
1.15
21653--21709
25
2.2
26
84
9
73
36
1
0
61
1.07
21761--21817
30
1.9
29
85
3
78
47
3
1
47
1.29
21991--22019
6
4.8
6
100
0
58
48
0
0
51
1.00
22267--22292
2
13.0
2
100
0
52
0
50
0
50
1.00
22632--22664
2
17.0
2
93
6
59
48
0
0
51
1.00
23305--23350
19
2.5
18
85
3
56
23
6
0
69
1.11
23363--23729
166
2.2
165
84
3
481
30
11
5
52
1.61
23300--23825
166
3.2
165
80
4
411
30
10
5
52
1.59
25250--25851
158
3.9
156
85
6
776
36
10
10
41
1.75
27194--27239
21
2.0
24
88
12
71
21
13
4
60
1.49
27498--27530
2
16.5
2
100
0
66
48
0
0
51
1.00
27598--27636
20
2.0
20
100
0
78
61
0
7
30
1.24
28772--28855
18
4.4
19
72
17
59
38
1
1
59
1.13
28818--28855
20
1.9
20
89
10
60
42
0
2
55
1.14
29973--30009
3
12.3
3
94
0
65
29
0
0
70
0.88
30751--30800
14
3.6
14
73
10
57
38
0
0
62
0.96

Tables:   1

The End!