genome.fa.s2112.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2112
Parameters: 2 7 7 80 10 50 1000
Length:  107201

Tables:   1   

This is table  1  of  1  ( 101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4235--4263	12	2.5	12	94	5	51	48	0	0	51	1.00
4235--4270	11	3.2	11	88	7	54	44	0	0	55	0.99
4282--4316	11	3.3	11	92	8	63	25	0	0	74	0.82
4461--4532	18	3.9	18	76	16	60	47	0	0	52	1.00
4504--4579	8	9.1	8	74	20	50	35	0	1	63	1.03
4525--4587	11	5.9	11	77	5	67	33	0	1	65	1.03
4517--4587	21	3.4	21	79	7	74	33	0	1	64	1.02
5589--5631	14	3.1	14	80	6	52	37	0	0	62	0.95
5616--5663	19	2.6	17	81	9	51	47	2	0	50	1.12
6018--6055	6	6.8	6	82	17	55	65	0	0	34	0.93
6018--6055	10	3.5	11	89	10	60	65	0	0	34	0.93
6043--6106	25	2.5	26	78	12	71	50	0	0	50	1.00
6608--6632	8	3.1	8	100	0	50	24	0	0	76	0.80
7448--7516	33	2.1	34	83	8	88	44	0	2	52	1.16
7709--7758	20	2.6	19	78	12	57	42	2	0	56	1.11
8130--8169	2	20.0	2	100	0	80	50	0	0	50	1.00
21012--21052	21	2.0	21	85	0	55	41	7	12	39	1.70
21593--21626	11	2.9	11	91	8	50	44	26	0	29	1.55
25491--25564	22	3.5	21	70	20	64	47	0	0	52	1.00
25944--25975	2	16.0	2	100	0	64	50	0	0	50	1.00
26024--26048	2	12.5	2	100	0	50	52	0	48	0	1.00
26763--26787	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27831--27866	18	2.1	17	89	5	54	44	16	16	22	1.86
30635--30665	4	7.8	4	92	0	53	77	3	0	19	0.90
31765--31805	15	2.6	16	84	3	57	36	0	2	60	1.10
31785--31826	22	1.9	22	90	0	66	30	2	2	64	1.19
31786--31839	22	2.4	22	78	9	56	35	1	3	59	1.26
31904--31977	37	2.0	38	83	2	96	37	10	13	37	1.80
31994--32029	16	2.2	16	90	0	54	33	11	5	50	1.61
32039--32102	16	3.9	17	72	15	62	31	6	12	50	1.65
32994--33054	24	2.6	25	87	10	92	57	1	0	40	1.08
35726--36124	165	2.3	169	74	8	391	44	7	6	41	1.58
36445--36516	23	3.0	23	75	18	67	44	0	0	55	0.99
37202--37231	15	2.0	15	93	0	51	36	0	0	63	0.95
37725--37774	16	3.1	16	70	0	55	44	4	6	46	1.47
37727--37827	32	3.2	31	82	8	116	42	7	3	45	1.52
39574--39615	2	21.5	2	95	4	77	52	0	0	47	1.00
39615--39656	21	2.0	21	100	0	84	42	14	9	33	1.78
42270--42317	2	24.0	2	100	0	96	50	0	50	0	1.00
45130--45181	23	2.3	23	79	0	59	44	0	1	53	1.11
45228--45278	22	2.3	23	86	10	70	43	0	3	52	1.19
45273--45316	18	2.4	17	85	11	52	65	0	0	34	0.93
45493--45521	13	2.2	13	100	0	58	58	0	0	41	0.98
45686--45730	23	2.0	23	86	8	65	46	4	0	48	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47658--47687	2	15.0	2	100	0	60	50	0	0	50	1.00
48936--48961	12	2.2	12	100	0	52	30	0	46	23	1.53
53647--53704	22	2.7	21	81	7	55	48	0	0	51	1.00
53659--53702	21	2.0	22	86	4	63	47	0	0	52	1.00
54804--54856	24	2.2	24	86	3	72	49	0	3	47	1.19
54771--54882	55	2.0	55	96	0	206	47	0	3	48	1.25
58153--58195	12	3.8	12	80	20	56	23	2	0	74	0.93
58153--58212	23	2.7	22	80	17	61	25	1	0	73	0.93
58888--58927	3	13.3	3	100	0	80	32	0	0	67	0.91
59076--59121	23	2.0	24	86	4	67	26	0	4	69	1.07
59086--59132	19	2.5	20	75	10	53	21	0	6	72	1.07
59104--59129	12	2.2	12	100	0	52	15	0	0	84	0.62
60430--60522	11	8.5	11	70	15	59	34	1	2	62	1.14
60450--60514	30	2.1	30	85	5	85	33	0	1	64	1.03
60710--60738	11	2.6	11	100	0	58	72	0	0	27	0.85
60671--60775	10	11.0	9	70	21	63	63	0	0	35	1.01
60667--60774	38	2.8	40	82	10	122	62	0	0	36	1.01
60709--60774	8	8.0	8	72	24	57	63	0	0	36	0.95
60681--60782	28	3.6	29	82	12	115	64	0	0	35	0.94
60709--60775	19	3.5	19	75	18	66	64	0	0	35	0.94
61128--61196	12	6.2	12	72	16	58	46	0	0	53	1.00
61138--61196	21	2.7	23	71	15	61	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61138--61202	22	3.0	21	72	14	60	50	1	0	47	1.10
61550--61577	14	2.0	14	100	0	56	71	0	0	28	0.86
61894--61936	22	2.0	22	90	9	70	65	0	0	34	0.93
66073--66132	17	3.4	17	73	15	50	66	0	0	33	0.92
66120--66180	19	3.2	19	77	9	61	54	0	0	45	1.00
66129--66184	20	2.8	20	84	7	62	53	0	0	46	1.00
66135--66196	15	4.2	15	76	10	56	58	0	0	41	0.98
66062--66287	11	20.8	11	66	22	88	57	1	0	40	1.13
66712--66753	16	2.5	17	88	3	59	38	0	2	59	1.10
67337--67372	2	18.0	2	94	0	63	52	0	0	47	1.00
67819--67844	8	3.2	8	100	0	52	34	0	0	65	0.93
67818--67873	16	3.5	16	80	11	62	41	5	0	53	1.24
68827--68883	24	2.3	25	79	11	64	49	0	0	50	1.00
71859--71895	2	18.5	2	100	0	74	48	0	0	51	1.00
79184--79230	19	2.4	20	85	3	60	36	4	8	51	1.52
80349--80656	170	1.8	171	89	0	483	25	13	20	40	1.89
82671--82753	29	3.0	28	81	13	84	38	0	1	60	1.05
83566--83630	30	2.2	29	81	13	80	50	0	0	49	1.00
88477--88515	17	2.2	17	86	13	53	53	2	5	38	1.37
94292--94335	15	2.7	16	82	13	54	18	81	0	0	0.68
94380--94441	10	6.6	9	77	15	63	12	80	6	0	0.89
99887--99928	19	2.3	18	84	11	59	0	73	19	7	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103153--103184	13	2.4	14	94	5	57	50	0	0	50	1.00
103365--103464	45	2.2	46	80	8	107	44	1	1	54	1.13
103158--103510	116	3.0	118	79	15	372	43	1	1	52	1.22
103732--103853	63	2.0	63	90	1	192	38	1	4	55	1.29
103748--103879	63	2.2	60	82	5	158	37	0	3	58	1.22
103895--103956	24	2.6	24	75	10	63	24	3	4	67	1.25
103879--103955	24	3.3	22	73	20	59	24	3	5	66	1.30
105216--105279	9	6.9	9	76	11	58	75	0	25	0	0.81
105220--105265	15	3.1	15	83	0	65	78	0	21	0	0.76
105219--105281	24	2.7	23	81	16	83	74	0	25	0	0.82
105334--105369	14	2.6	14	90	0	54	38	2	0	58	1.13
105368--105405	16	2.3	17	86	4	51	39	5	0	55	1.23
106662--106724	33	1.9	33	93	0	108	55	17	3	23	1.56

Tables:   1

The End!