genome.fa.s2113.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2113
Parameters: 2 7 7 80 10 50 1000
Length:  27783

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
694--738	21	2.1	21	84	8	56	22	20	4	53	1.63
2948--2973	13	2.0	13	100	0	52	30	15	15	38	1.88
3012--3087	21	3.7	21	80	3	100	30	15	10	43	1.81
3033--3105	20	3.6	20	79	3	92	32	17	12	36	1.87
3012--3105	41	2.3	41	92	0	161	30	17	11	40	1.85
6406--6611	78	2.6	78	82	2	243	28	16	30	24	1.97
6563--6634	28	2.6	27	84	8	83	25	18	33	23	1.97
6622--7007	52	7.4	51	72	10	253	32	12	25	29	1.93
6826--6898	27	2.7	27	85	12	96	20	21	34	23	1.97
6512--7012	263	1.9	262	89	3	783	31	13	26	28	1.94
9375--9400	13	2.0	13	100	0	52	38	15	15	30	1.88
9354--9420	33	2.0	33	88	0	98	43	16	14	25	1.86
9440--9507	19	3.9	18	73	23	74	36	14	11	36	1.83
9443--9505	32	2.0	32	93	0	108	34	15	12	36	1.86
9543--9618	21	3.7	20	85	5	98	32	17	14	35	1.90
10231--11263	55	18.4	55	85	7	1184	23	20	28	27	1.99
10277--10366	26	3.3	26	66	19	67	20	18	33	27	1.96
10303--10391	29	3.2	29	65	26	82	21	19	31	28	1.97
10254--11262	109	9.0	110	90	4	1275	23	20	28	27	1.99
11124--11209	27	3.1	27	62	15	68	23	18	30	27	1.98
12260--12296	13	2.8	13	91	4	56	0	8	5	86	0.70
17922--18049	52	2.5	52	94	3	224	30	17	17	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18058--18082	13	1.9	13	100	0	50	36	16	16	32	1.90
18123--18189	33	2.0	33	88	0	98	40	13	11	34	1.81
18145--18169	13	1.9	13	100	0	50	32	16	16	36	1.90
20027--20185	49	3.1	49	76	6	147	36	15	23	24	1.94
20236--20368	43	3.1	42	80	9	117	33	17	24	24	1.96
20265--20368	43	2.5	42	82	9	122	30	19	24	25	1.98
20298--21208	49	18.6	49	87	3	1300	32	17	26	24	1.97
20299--21212	98	9.3	98	97	1	1606	32	17	26	24	1.97
21224--21316	33	2.8	33	93	6	163	15	19	36	29	1.92
21325--22044	34	20.7	34	73	16	423	33	13	32	20	1.91
21324--21513	71	2.7	70	92	3	303	35	12	33	18	1.89
21436--21605	87	1.9	88	92	1	288	32	14	33	19	1.91
21524--22051	70	7.8	69	82	11	509	33	13	31	21	1.92
21588--22114	62	8.0	62	79	15	313	33	13	31	21	1.93
21867--21959	28	3.1	28	71	16	96	34	12	30	22	1.92
21285--22017	369	2.0	369	85	7	1015	33	13	32	20	1.91
21966--22143	31	5.7	31	84	7	236	28	17	28	25	1.98
21948--22143	63	3.1	63	94	2	335	30	16	28	25	1.97
23094--23124	16	1.9	16	93	0	53	0	6	6	87	0.68

Tables:   1

The End!