Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2116
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36227
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.32
Found at i:1886 original size:19 final size:18
Alignment explanation
Indices: 1858--1893 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
1848 GCAGTAGCTT
1858 AAATTGTATCAATACAAA
1 AAATTGTATCAATACAAA
*
1876 AAATATGTATCGATACAA
1 AAAT-TGTATCAATACAA
1894 CATTTTATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.53, C:0.11, G:0.08, T:0.28
Consensus pattern (18 bp):
AAATTGTATCAATACAAA
Found at i:2754 original size:49 final size:49
Alignment explanation
Indices: 2633--3343 Score: 1001
Period size: 49 Copynumber: 14.9 Consensus size: 49
2623 TTGGGTTTTA
*
2633 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
2682 -AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
* *
2730 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
* * * *
2779 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
* *
2828 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
* *
2877 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
* *
2926 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
* *
2975 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
* *
3018 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAAG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
* * *
3067 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----TG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
3110 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
* * * *
3159 AAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGAC-T-----TG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
*
3202 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
* * *
3251 AAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAAGATG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-AAAGATG
* * *
3301 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
3344 GAAGGGTTGC
Statistics
Matches: 591, Mismatches: 51, Indels: 40
0.87 0.07 0.06
Matches are distributed among these distances:
43 115 0.19
44 2 0.00
45 1 0.00
47 1 0.00
48 49 0.08
49 377 0.64
50 46 0.08
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
Found at i:2830 original size:98 final size:97
Alignment explanation
Indices: 2633--3343 Score: 1078
Period size: 92 Copynumber: 7.4 Consensus size: 97
2623 TTGGGTTTTA
* * * *
2633 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGT-GAGGTGCCAATGTGCT
1 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCT
*
2697 GATTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GATTCAAGGCCAGCTATATTGGACTTAAAG-TG
2730 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCT
1 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCT
*
2795 GATTCAAGGCCAGCTATATTGGACTTAATGGTG
66 GATTCAAGGCCAGCTATATTGGACTTAA-AGTG
2828 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCT
1 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCT
2893 GATTCAAGGCCAGCTATATTGGACTTAAAGATG
66 GATTCAAGGCCAGCTATATTGGACTTAAAG-TG
2926 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCT
1 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCT
2991 GATTCAAGGCCAGCTATATTGGACTT--A---
66 GATTCAAGGCCAGCTATATTGGACTTAAAGTG
3018 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGA-AGAAGGTGCCAATATGC
1 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATA-AAGGTGCCAATATGC
*
3082 TGATTCAAGGCCAGCGATATTGGAC-T----TG
65 TGATTCAAGGCCAGCTATATTGGACTTAAAGTG
* *
3110 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCT
1 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCT
* *
3175 GATTCAAGGCCAACGATATTGGAC-T----TG
66 GATTCAAGGCCAGCTATATTGGACTTAAAGTG
* * *
3202 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGAAGGTGCCAATATGCT
1 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCT
*
3267 GATTCAAGGCCAGCAATATTGGACTTAAAAGATG
66 GATTCAAGGCCAGCTATATTGGACTT-AAAG-TG
* * * *
3301 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTA
3344 GAAGGGTTGC
Statistics
Matches: 583, Mismatches: 17, Indels: 26
0.93 0.03 0.04
Matches are distributed among these distances:
91 2 0.00
92 260 0.45
93 1 0.00
96 1 0.00
97 47 0.08
98 229 0.39
99 43 0.07
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (97 bp):
AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCT
GATTCAAGGCCAGCTATATTGGACTTAAAGTG
Found at i:3324 original size:50 final size:50
Alignment explanation
Indices: 3200--3343 Score: 236
Period size: 50 Copynumber: 2.9 Consensus size: 50
3190 ATATTGGACT
* * *
3200 TGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-AAAGG
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAAGA
*
3249 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAAGA
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAAGA
*
3299 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA
3344 GAAGGGTTGC
Statistics
Matches: 88, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
49 41 0.47
50 47 0.53
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (50 bp):
TGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAAGA
Found at i:3423 original size:33 final size:33
Alignment explanation
Indices: 3343--3432 Score: 162
Period size: 34 Copynumber: 2.7 Consensus size: 33
3333 TATTGGGCTT
*
3343 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGTTTGCCACCGACTTGTGTGGGCTTTAG
3376 AGAATGGTTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAA-GGTTTGCCACCGACTTGTGTGGGCTTTAG
3410 AGAAGGTTTGCCACCGACTTGTG
1 AGAAGGTTTGCCACCGACTTGTG
3433 GGCTTTGAAA
Statistics
Matches: 55, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
33 23 0.42
34 32 0.58
ACGTcount: A:0.19, C:0.19, G:0.33, T:0.29
Consensus pattern (33 bp):
AGAAGGTTTGCCACCGACTTGTGTGGGCTTTAG
Found at i:3458 original size:29 final size:29
Alignment explanation
Indices: 3398--3656 Score: 139
Period size: 29 Copynumber: 8.5 Consensus size: 29
3388 CACCGACTTG
* * *
3398 TGTGGGCTTTAGAGAAGGTTTGCCACCGACT
1 TGTGGGCTTT-GAAAAGG-GTGCCACTGACT
*
3429 TGTGGGCTTTGAAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAAGGGTGCCACTGACT
* * * *
3458 TGTGGGCTTAAAAGAAAAAGAGTGCTA-TAGAGT
1 TGTGGGCTT---TG-AAAAGGGTGCCACT-GACT
* * * * *
3491 TGTGAGCTTACAAAGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTT----TG-AAAAGGGTGCCACTGACT
* * *
3525 TGTGGACTTTGGAAAA-GATGCCACCGACT
1 TGTGGGCTTT-GAAAAGGGTGCCACTGACT
* *
3554 TGTGGGCTTCGGAAAAGGGTGCCACTGATT
1 TGTGGGCTT-TGAAAAGGGTGCCACTGACT
* *
3584 TGTGGGCTTTG--AAGGTTGCCACTAACT
1 TGTGGGCTTTGAAAAGGGTGCCACTGACT
***
3611 TGTGGGCTTTTGAAAAAAAATGCCACTGACT
1 TGTGGGC-TTTG-AAAAGGGTGCCACTGACT
3642 TGTGGGCTTTGAAAA
1 TGTGGGCTTTGAAAA
3657 AGATGCCATT
Statistics
Matches: 181, Mismatches: 33, Indels: 30
0.74 0.14 0.12
Matches are distributed among these distances:
27 20 0.11
28 4 0.02
29 45 0.25
30 33 0.18
31 30 0.17
32 2 0.01
33 20 0.11
34 27 0.15
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (29 bp):
TGTGGGCTTTGAAAAGGGTGCCACTGACT
Found at i:3525 original size:34 final size:33
Alignment explanation
Indices: 3440--3528 Score: 99
Period size: 34 Copynumber: 2.7 Consensus size: 33
3430 GTGGGCTTTG
* * *
3440 AAAAGGGTGCCACTA-ACTTGTGGGCTTAAAAGA
1 AAAAGAGTGCCAC-AGAGTTGTGAGCTTAAAAGA
* *
3473 AAAAGAGTGCTATAGAGTTGTGAGCTTACAAAGA
1 AAAAGAGTGCCACAGAGTTGTGAGCTTA-AAAGA
*
3507 AAAAGAGTGCCACGGAGTTGTG
1 AAAAGAGTGCCACAGAGTTGTG
3529 GACTTTGGAA
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
32 1 0.02
33 21 0.46
34 24 0.52
ACGTcount: A:0.37, C:0.12, G:0.29, T:0.21
Consensus pattern (33 bp):
AAAAGAGTGCCACAGAGTTGTGAGCTTAAAAGA
Found at i:3606 original size:27 final size:27
Alignment explanation
Indices: 3568--3620 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
3558 GGCTTCGGAA
* *
3568 AAGGGTGCCACTGATTTGTGGGCTTTG
1 AAGGGTGCCACTAACTTGTGGGCTTTG
*
3595 AAGGTTGCCACTAACTTGTGGGCTTT
1 AAGGGTGCCACTAACTTGTGGGCTTT
3621 TGAAAAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.17, C:0.17, G:0.32, T:0.34
Consensus pattern (27 bp):
AAGGGTGCCACTAACTTGTGGGCTTTG
Found at i:3675 original size:29 final size:30
Alignment explanation
Indices: 3505--3748 Score: 149
Period size: 31 Copynumber: 8.2 Consensus size: 30
3495 AGCTTACAAA
* * *
3505 GAAAAAGAGTGCCACGGAGTTGTGGACTTT
1 GAAAAAGATTGCCACTGAGTCGTGGACTTT
* * * * * *
3535 GGAAAAGA-TGCCACCGACTTGTGGGCTTC
1 GAAAAAGATTGCCACTGAGTCGTGGACTTT
* ** * * *
3564 GGAAAAGGGTGCCACTGATTTGTGGGCTTT
1 GAAAAAGATTGCCACTGAGTCGTGGACTTT
* * * * *
3594 G---AAGGTTGCCACTAACTTGTGGGCTTTT
1 GAAAAAGATTGCCACTGAGTCGTGGAC-TTT
* * * * *
3622 GAAAAAAAATGCCACTGACTTGTGGGCTTT
1 GAAAAAGATTGCCACTGAGTCGTGGACTTT
*
3652 GAAAAAGA-TGCCATTGAGTCGTGGACTTT
1 GAAAAAGATTGCCACTGAGTCGTGGACTTT
* * *
3681 GAGCAGAGATTACCACTGAGTCGTGGACTTT
1 GA-AAAAGATTGCCACTGAGTCGTGGACTTT
*
3712 GAGAAGAGATTGCCACTGAGTCGTGGACTTT
1 GA-AAAAGATTGCCACTGAGTCGTGGACTTT
3743 -AAAAAG
1 GAAAAAG
3749 GTATTTGAAG
Statistics
Matches: 179, Mismatches: 28, Indels: 15
0.81 0.13 0.07
Matches are distributed among these distances:
27 20 0.11
28 4 0.02
29 47 0.26
30 41 0.23
31 67 0.37
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.26
Consensus pattern (30 bp):
GAAAAAGATTGCCACTGAGTCGTGGACTTT
Found at i:5053 original size:17 final size:17
Alignment explanation
Indices: 5033--5117 Score: 74
Period size: 17 Copynumber: 5.3 Consensus size: 17
5023 GCCTTTGCAC
5033 TTTTTTTTTGTGTTTTT
1 TTTTTTTTTGTGTTTTT
5050 TTTTGTTTTT-TG--TTT
1 TTTT-TTTTTGTGTTTTT
* *
5065 TTTTTTTAT-T-TTTTA
1 TTTTTTTTTGTGTTTTT
*
5080 TTTTTTTTTGTGTTTAT
1 TTTTTTTTTGTGTTTTT
* *
5097 TTTTTGTTTGT-TTGTT
1 TTTTTTTTTGTGTTTTT
5113 TTTTT
1 TTTTT
5118 GTCATCACTT
Statistics
Matches: 55, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
14 5 0.09
15 17 0.31
16 9 0.16
17 19 0.35
18 5 0.09
ACGTcount: A:0.04, C:0.00, G:0.11, T:0.86
Consensus pattern (17 bp):
TTTTTTTTTGTGTTTTT
Found at i:5058 original size:19 final size:18
Alignment explanation
Indices: 5036--5116 Score: 92
Period size: 18 Copynumber: 4.3 Consensus size: 18
5026 TTTGCACTTT
5036 TTTTTTGTGTTTTTTTTTG
1 TTTTTTGT-TTTTTTTTTG
*
5055 TTTTTTGTTTTTTTTTTA
1 TTTTTTGTTTTTTTTTTG
*
5073 TTTTTTATTTTTTTTTGTG
1 TTTTTTGTTTTTTTTT-TG
*
5092 TTTATTT-TTTGTTTGTTTG
1 TTT-TTTGTTT-TTTTTTTG
5111 TTTTTT
1 TTTTTT
5117 TGTCATCACT
Statistics
Matches: 55, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
18 27 0.49
19 20 0.36
20 8 0.15
ACGTcount: A:0.04, C:0.00, G:0.11, T:0.85
Consensus pattern (18 bp):
TTTTTTGTTTTTTTTTTG
Found at i:5069 original size:30 final size:29
Alignment explanation
Indices: 5033--5119 Score: 104
Period size: 29 Copynumber: 3.0 Consensus size: 29
5023 GCCTTTGCAC
*
5033 TTTTTTTTTGTGTTTTTTTTTGTTTTT-TG
1 TTTTTTTTT-TGTTTTTTTTTTTTTTTGTG
*
5062 TTTTTTTTTTATTTTTTATTTTTTTTTGTG
1 TTTTTTTTTTGTTTTTT-TTTTTTTTTGTG
* * *
5092 TTTATTTTTTGTTTGTTTGTTTTTTTGT
1 TTTTTTTTTTGTTTTTTTTTTTTTTTGT
5120 CATCACTTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
28 7 0.14
29 27 0.54
30 16 0.32
ACGTcount: A:0.03, C:0.00, G:0.11, T:0.85
Consensus pattern (29 bp):
TTTTTTTTTTGTTTTTTTTTTTTTTTGTG
Found at i:5133 original size:1 final size:1
Alignment explanation
Indices: 5033--5117 Score: 62
Period size: 1 Copynumber: 85.0 Consensus size: 1
5023 GCCTTTGCAC
* * * * * * * * *
5033 TTTTTTTTTGTGTTTTTTTTTGTTTTTTGTTTTTTTTTTATTTTTTATTTTTTTTTGTGTTTATT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
5098 TTTTGTTTGTTTGTTTTTTT
1 TTTTTTTTTTTTTTTTTTTT
5118 GTCATCACTT
Statistics
Matches: 60, Mismatches: 24, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
1 60 1.00
ACGTcount: A:0.04, C:0.00, G:0.11, T:0.86
Consensus pattern (1 bp):
T
Found at i:12081 original size:13 final size:13
Alignment explanation
Indices: 12063--12087 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12053 CAAAGATCAG
12063 TGTATCGATACAA
1 TGTATCGATACAA
12076 TGTATCGATACA
1 TGTATCGATACA
12088 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:12154 original size:19 final size:19
Alignment explanation
Indices: 12130--12182 Score: 70
Period size: 20 Copynumber: 2.7 Consensus size: 19
12120 TAGCTTAAAT
12130 TGTATCGATACAAAAACTA
1 TGTATCGATACAAAAACTA
***
12149 TGTATCGATACAACATTTTA
1 TGTATCGATACAA-AAACTA
12169 TGTATCGATACAAA
1 TGTATCGATACAAA
12183 TCATTGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.32
Consensus pattern (19 bp):
TGTATCGATACAAAAACTA
Found at i:13606 original size:18 final size:18
Alignment explanation
Indices: 13583--13618 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
13573 GTTTTTTTGT
13583 GAAAAAAAAAAGAAAAAA
1 GAAAAAAAAAAGAAAAAA
* *
13601 GAAAAACAAGAGAAAAAA
1 GAAAAAAAAAAGAAAAAA
13619 AAAGAATGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.83, C:0.03, G:0.14, T:0.00
Consensus pattern (18 bp):
GAAAAAAAAAAGAAAAAA
Found at i:13611 original size:16 final size:16
Alignment explanation
Indices: 13584--13621 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
13574 TTTTTTTGTG
13584 AAAAAAAAAAGA-AAA
1 AAAAAAAAAAGAGAAA
*
13599 AAGAAAAACAAGAGAAA
1 AA-AAAAAAAAGAGAAA
13616 AAAAAA
1 AAAAAA
13622 GAATGAAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 2 0.10
16 13 0.65
17 5 0.25
ACGTcount: A:0.87, C:0.03, G:0.11, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAGAGAAA
Found at i:15174 original size:92 final size:89
Alignment explanation
Indices: 15019--15218 Score: 242
Period size: 92 Copynumber: 2.2 Consensus size: 89
15009 ATTCCTACCG
* * * * *
15019 GATGGTATT-ATGCATCATAATGCTTGATTCCTTAAGGTAAGGATATCCTGATCACTCATTCCTA
1 GATGGTATTGATGCATCACAAAGCCTGATTCCTTAAGGCAAGGATATCCTGACCACTCATTCCTA
* * *
15083 ATCATATCCTTTTCTTTTTGCCACTA
66 ATCATATCC-CTT-TTTTAGACACTA
**
15109 GATGGTATTGATGCATCACAAAGCCTGATTTCCTTGGGGCAAGGATAT-CTCGACCACTCATTCC
1 GATGGTATTGATGCATCACAAAGCCTGA-TTCCTTAAGGCAAGGATATCCT-GACCACTCATTCC
15173 TAATCATATCCCTTTTTTAGACACTA
64 TAATCATATCCCTTTTTTAGACACTA
**
15199 GATGACATTGATGCATCACA
1 GATGGTATTGATGCATCACA
15219 TTACCACAAA
Statistics
Matches: 95, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
90 37 0.39
91 19 0.20
92 39 0.41
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (89 bp):
GATGGTATTGATGCATCACAAAGCCTGATTCCTTAAGGCAAGGATATCCTGACCACTCATTCCTA
ATCATATCCCTTTTTTAGACACTA
Found at i:15994 original size:47 final size:45
Alignment explanation
Indices: 15925--16048 Score: 122
Period size: 47 Copynumber: 2.7 Consensus size: 45
15915 CCCTAGTCTA
* * * *
15925 ATTGCATTGGCATTAGGACCTAGTCAAACTTTTCACACCCTTATTTG
1 ATTGTATTGGCATTA-GTCCTAGTCAAACTTTTCACACCATT-GTTG
* ***
15972 ATTGTATTGGCGATTAGTCCTAGTCGAACTTTTTTTTACCATTGTTG
1 ATTGTATTGGC-ATTAGTCCTAGTCAAAC-TTTTCACACCATTGTTG
* *
16019 ATTGTTTTGGCATTAGTCCTGGTCAAACTT
1 ATTGTATTGGCATTAGTCCTAGTCAAACTT
16049 CTTTCATATC
Statistics
Matches: 64, Mismatches: 11, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
45 2 0.03
46 15 0.23
47 34 0.53
48 13 0.20
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.42
Consensus pattern (45 bp):
ATTGTATTGGCATTAGTCCTAGTCAAACTTTTCACACCATTGTTG
Found at i:16168 original size:46 final size:46
Alignment explanation
Indices: 16109--16226 Score: 130
Period size: 45 Copynumber: 2.6 Consensus size: 46
16099 CATCTTCGTA
*
16109 TGATGTGACGGTTTAGCCTTGGTCAAAACTCCTTTTCATATTTATT
1 TGATGTGAAGGTTTAGCCTTGGTCAAAACTCCTTTTCATATTTATT
* * * * * * *
16155 TGATATGATGGTTTAGCCCTAGTC-AAACTTCTTTTTATATTTGTT
1 TGATGTGAAGGTTTAGCCTTGGTCAAAACTCCTTTTCATATTTATT
* * *
16200 TGACGTAAAGGCTTAGCCTTGGTCAAA
1 TGATGTGAAGGTTTAGCCTTGGTCAAA
16227 CTCAATACAT
Statistics
Matches: 57, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
45 35 0.61
46 22 0.39
ACGTcount: A:0.24, C:0.16, G:0.19, T:0.42
Consensus pattern (46 bp):
TGATGTGAAGGTTTAGCCTTGGTCAAAACTCCTTTTCATATTTATT
Found at i:17449 original size:19 final size:17
Alignment explanation
Indices: 17423--17462 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 17
17413 ATTCCTTTTA
17423 TTTC-TTGAAATTTTCATT
1 TTTCTTTGAAA-TTTC-TT
17441 TTTCTTTGAAATTTCTT
1 TTTCTTTGAAATTTCTT
17458 TTTCT
1 TTTCT
17463 AAAATACGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 7 0.33
18 8 0.38
19 6 0.29
ACGTcount: A:0.17, C:0.12, G:0.05, T:0.65
Consensus pattern (17 bp):
TTTCTTTGAAATTTCTT
Found at i:17504 original size:156 final size:156
Alignment explanation
Indices: 17239--17548 Score: 446
Period size: 158 Copynumber: 2.0 Consensus size: 156
17229 AATTACCATT
* *
17239 AAATTAGTTTCAAAAATTTCTTTTTATTTCATGAATTTTTCATTTTTCCTTGAAATTTCCTTATT
1 AAATTAGTTTCAAAAATTTCCTTTTATTTCATGAAATTTTCATTTTTCCTTGAAATTTCCTTATT
* * *
17304 TCCGAAATATGAAGTTTTCTACTCCGTAAATGTTTTTGGAAGGATTTTGTCTTAGTTTATAATTT
66 TCCAAAATACGAAGTTTTCTACTCCGTAAATGTTTTTGGAAGGATTCT-TCTTAGTTTATAATTT
17369 TCAAAATTCATCAAATATTATCATTTTC
130 T-AAAATTCATCAAATATTATCATTTTC
* * *
17397 AAATTAGTTTTAAATAA-TTCCTTTTATTTCTTGAAATTTTCATTTTTCTTTGAAATTT-CTT-T
1 AAATTAGTTTCAAA-AATTTCCTTTTATTTCATGAAATTTTCATTTTTCCTTGAAATTTCCTTAT
* ** * *
17459 TTCTAAAATACGAAGTTTTCTACTTTGTAAATGTTTTTGGGAGGATTCTTCTTGGTTTATAATTT
65 TTCCAAAATACGAAGTTTTCTACTCCGTAAATGTTTTTGGAAGGATTCTTCTTAGTTTATAATTT
*
17524 TTAAATTCATCAAATATTATCATTT
130 TAAAATTCATCAAATATTATCATTT
17549 AATTCATATA
Statistics
Matches: 137, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
154 23 0.17
155 16 0.12
156 43 0.31
157 3 0.02
158 50 0.36
159 2 0.01
ACGTcount: A:0.29, C:0.11, G:0.09, T:0.51
Consensus pattern (156 bp):
AAATTAGTTTCAAAAATTTCCTTTTATTTCATGAAATTTTCATTTTTCCTTGAAATTTCCTTATT
TCCAAAATACGAAGTTTTCTACTCCGTAAATGTTTTTGGAAGGATTCTTCTTAGTTTATAATTTT
AAAATTCATCAAATATTATCATTTTC
Found at i:17658 original size:163 final size:158
Alignment explanation
Indices: 17206--17730 Score: 480
Period size: 163 Copynumber: 3.3 Consensus size: 158
17196 TTGGACATCA
* * * * * *
17206 AAATTCTTTAAATATCATCATTTAATTACCATTAAATTAGTTTCAAAAATTTCTTTTTATTTCAT
1 AAATTCATCAAATATTATCATTTAATT-CCA-TAAATCAGTTTTAAAAA-TT-TTTTTATTTTAT
** **
17271 GAATTTTTCATTTTTCCTTGAAATTTCCTTATTTCCGAAATATGAAGTTTTCTACTCCGTAAATG
62 GAATTTTTCATTTTTCCTTGAAATTTCC-TATTTCTAAAATATGAAGTTTTCTA-TTTGTAAATG
* * *
17336 TTTTTGGAAGGATTTTGTCTTAGTTTATAATTTTCA
125 TTTTTGGGAGGATTTT-TCTTGGTTTATAATTTT-T
* *
17372 AAATTCATCAAATATTATCA-TT--TT-C--AAATTAGTTTTAAATAATTCCTTTTATTTCT-TG
1 AAATTCATCAAATATTATCATTTAATTCCATAAATCAGTTTTAAA-AATT-TTTTTATTT-TATG
* * * *
17430 AAATTTTCATTTTTCTTTGAAATTT-CTTTTTCTAAAATACGAAGTTTTCTACTTTGTAAATGTT
63 AATTTTTCATTTTTCCTTGAAATTTCCTATTTCTAAAATATGAAGTTTTCTA-TTTGTAAATGTT
*
17494 TTTGGGAGGATTCTTCTTGGTTTATAATTTTT
127 TTTGGGAGGATTTTTCTTGGTTTATAATTTTT
*
17526 AAATTCATCAAATATTATCATTTAATTCATATAAATCAGTTTTAAAAATTTTATTTACTTTTAT-
1 AAATTCATCAAATATTATCATTTAATTC-CATAAATCAGTTTTAAAAATTTT-TTTA-TTTTATG
*
17590 AAGTTTTTCATTTTTTCCTT-AAATTTCACTATTTCTAAAAGATTG-AGTTTTCTATTTGGTAAA
63 AA-TTTTTCA-TTTTTCCTTGAAATTTC-CTATTTCTAAAATA-TGAAGTTTTCTATTT-GTAAA
* * * * *
17653 TGTTTTCAGGG-TGATTTTTGTCGGTTTAAAATTTTT
123 TGTTTT-TGGGAGGATTTTTCTTGGTTTATAATTTTT
* * * *
17689 AGAATTAATCTAATATTGTCATTGAATTCCACTAAATCAGTT
1 A-AATTCATCAAATATTATCATTTAATTCCA-TAAATCAGTT
17731 ACAAAAAATT
Statistics
Matches: 301, Mismatches: 37, Indels: 44
0.79 0.10 0.12
Matches are distributed among these distances:
154 20 0.07
155 18 0.06
156 44 0.15
157 3 0.01
158 49 0.16
159 3 0.01
160 11 0.04
161 30 0.10
162 11 0.04
163 56 0.19
164 37 0.12
165 2 0.01
166 17 0.06
ACGTcount: A:0.30, C:0.11, G:0.09, T:0.50
Consensus pattern (158 bp):
AAATTCATCAAATATTATCATTTAATTCCATAAATCAGTTTTAAAAATTTTTTTATTTTATGAAT
TTTTCATTTTTCCTTGAAATTTCCTATTTCTAAAATATGAAGTTTTCTATTTGTAAATGTTTTTG
GGAGGATTTTTCTTGGTTTATAATTTTT
Found at i:17768 original size:163 final size:163
Alignment explanation
Indices: 17472--17768 Score: 361
Period size: 163 Copynumber: 1.8 Consensus size: 163
17462 TAAAATACGA
* * * *
17472 AGTTTTCTACTTTGTAAATGTTTTTGGGAGGATTCTTCTTGGTTTATAATTTTTAAATTCATCAA
1 AGTTTTCTACTTTGTAAATGTTTTAGGGAGGATTCTTCTCGGTTTAAAATTTTTAAATTAATCAA
* ** **
17537 ATATTATCATTTAATTCATATAAATCAGTTTTAAAAATTTTATTTACTTTTATAAGTTTTTCATT
66 ATATTATCATTGAATTCATATAAATCAGTTCAAAAAATTCAATTTACTTTTATAAGTTTTTCATT
17602 TTTTCCTTAAATTTCACTATTTCTAAAAGATTG
131 TTTTCCTTAAATTTCACTATTTCTAAAAGATTG
* * *
17635 AGTTTTCTA-TTTGGTAAATGTTTTCAGGG-TGATTTTTGTCGGTTTAAAATTTTTAGAATTAAT
1 AGTTTTCTACTTT-GTAAATGTTTT-AGGGAGGATTCTTCTCGGTTTAAAATTTTTA-AATTAAT
* * * *
17698 CTAATATTGTCATTGAATTCCA-CTAAATCAGTTACAAAAAATTCAATTTA-TTTTATGAG-TTT
63 CAAATATTATCATTGAATT-CATATAAATCAGTT-CAAAAAATTCAATTTACTTTTATAAGTTTT
*
17760 TGATTTTTT
126 TCATTTTTT
17769 GTATTATTAG
Statistics
Matches: 112, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
162 3 0.03
163 52 0.46
164 43 0.38
165 14 0.12
ACGTcount: A:0.30, C:0.09, G:0.11, T:0.50
Consensus pattern (163 bp):
AGTTTTCTACTTTGTAAATGTTTTAGGGAGGATTCTTCTCGGTTTAAAATTTTTAAATTAATCAA
ATATTATCATTGAATTCATATAAATCAGTTCAAAAAATTCAATTTACTTTTATAAGTTTTTCATT
TTTTCCTTAAATTTCACTATTTCTAAAAGATTG
Found at i:17942 original size:15 final size:15
Alignment explanation
Indices: 17913--17941 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
17903 ATTTTTCAAA
17913 ATTTTATTTAATTTT
1 ATTTTATTTAATTTT
17928 ATTTTATTT-ATTTT
1 ATTTTATTTAATTTT
17942 TTCCAACTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (15 bp):
ATTTTATTTAATTTT
Found at i:18318 original size:13 final size:13
Alignment explanation
Indices: 18296--18326 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
18286 AATCTTATTT
*
18296 TCTTCTTAGGTAA
1 TCTTCGTAGGTAA
18309 TCTTCGTAGGTAA
1 TCTTCGTAGGTAA
18322 TCTTC
1 TCTTC
18327 TTATTTTGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.19, C:0.19, G:0.16, T:0.45
Consensus pattern (13 bp):
TCTTCGTAGGTAA
Found at i:19501 original size:140 final size:134
Alignment explanation
Indices: 19166--19551 Score: 438
Period size: 140 Copynumber: 2.8 Consensus size: 134
19156 GAAATTAATC
* * ** * **
19166 ATTTTTATATATTTCTACTATTCCTATGGTTAACCGTAAGGGTATAGAAATCTT-AAATTTTTTC
1 ATTTTTA-AAATTTCTAATATTCCTATGGTT-TTCGTAGGGGTATAGAAATCTTCAAAACTTTTC
* * *
19230 GCATCTTTTCAATTCTCCATTAAGGTACGAAATGAATTTTTTTAGAAATTAAAAAATTAAATAAA
64 GCATCTTTTCAGTTCTCCATTAAGGTACGAAATGAATTTTTTGA-AAATTAAAAAATTAAAAAAA
19295 AATCTTA
128 AATCTTA
* *
19302 ATTTTTAAGATTTCTAATATTCCTATAGTTTTTCGTAGGGGTATA-AAATTCTTCAAAACTTTTC
1 ATTTTTAAAATTTCTAATATTCCTAT-GGTTTTCGTAGGGGTATAGAAA-TCTTCAAAACTTTTC
* ** * *
19366 ACATCTTTTTGGTTCTCCATTATGGTATGAAATGAATTTTTTGAAAATT-AAAAATTAAACAAAA
64 GCATCTTTTCAGTTCTCCATTAAGGTACGAAATGAATTTTTTGAAAATTAAAAAATTAAA-AAAA
19430 ATTATTAGCTTA
128 A--A-T--CTTA
*
19442 ATTTTTCAAAATTTCTAATATTCCTATGGTTTTCGTAGGGGTATAGAAACCTTCAAAACTTTTCG
1 ATTTTT-AAAATTTCTAATATTCCTATGGTTTTCGTAGGGGTATAGAAATCTTCAAAACTTTTCG
** *
19507 TGTCTTTTCAGTTCTCCATTAAGGTACGAAAT-AAGATTTTTGAAA
65 CATCTTTTCAGTTCTCCATTAAGGTACGAAATGAA-TTTTTTGAAA
19552 TTTATAACTT
Statistics
Matches: 211, Mismatches: 27, Indels: 20
0.82 0.10 0.08
Matches are distributed among these distances:
134 13 0.06
135 41 0.19
136 55 0.26
137 1 0.00
138 1 0.00
139 2 0.01
140 76 0.36
141 22 0.10
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.42
Consensus pattern (134 bp):
ATTTTTAAAATTTCTAATATTCCTATGGTTTTCGTAGGGGTATAGAAATCTTCAAAACTTTTCGC
ATCTTTTCAGTTCTCCATTAAGGTACGAAATGAATTTTTTGAAAATTAAAAAATTAAAAAAAAAT
CTTA
Found at i:23236 original size:20 final size:20
Alignment explanation
Indices: 23211--23255 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
23201 GTTTCCACGC
*
23211 ATACATGCT-ATAATGTATCG
1 ATACAT-CTCATAAAGTATCG
*
23231 ATACATTTCATAAAGTATCG
1 ATACATCTCATAAAGTATCG
23251 ATACA
1 ATACA
23256 ATGCATTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 1 0.05
20 21 0.95
ACGTcount: A:0.40, C:0.16, G:0.11, T:0.33
Consensus pattern (20 bp):
ATACATCTCATAAAGTATCG
Found at i:27627 original size:21 final size:20
Alignment explanation
Indices: 27594--27634 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
27584 GAGGTGTTGG
27594 ACATACTAAAAATGCATGAA
1 ACATACTAAAAATGCATGAA
*
27614 ACATAGCTCAAAATGCATGAA
1 ACATA-CTAAAAATGCATGAA
27635 CGTGGACTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.51, C:0.17, G:0.12, T:0.20
Consensus pattern (20 bp):
ACATACTAAAAATGCATGAA
Found at i:29422 original size:52 final size:52
Alignment explanation
Indices: 29336--29933 Score: 454
Period size: 52 Copynumber: 11.5 Consensus size: 52
29326 AATGAGAAGA
* * * ** *
29336 ATGATAAGGGTGCCAATATGCTAATTTAAGGCCAATGACATTAGGCTTAAAG
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGGCTTAAAG
* * * ** * * *
29388 ATGACAAAGGTGCCAATGTGCTGACTCAAGGCCAATGACATTAGACTCAAAG
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGGCTTAAAG
** ** * *
29440 ATGGCAAAGGTGTTAATATGCTGATTCAAAGCCAGCGATATTAGACTTGAGAAAG
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGGCTT---AAAG
* * * * *
29495 AAGA-AGAAGGTGCCAATGTGCTGATTCAAGGCTAGCAACATT-GGACTTAAAG
1 ATGATA-AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGG-CTTAAAG
* * * *
29547 TTGATAAAGGTGCCATTGTGCTGATTCAAGGCCAACGATATT-GGACTTGAGAA-
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGG-CTT-A-AAG
* * * **
29600 A-GA-AGAAAGTGCCAATGTGCTGATTCAAGGCCAGCAATATTAAACTTAAAG
1 ATGATA-AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGGCTTAAAG
* * *
29651 ATGATAAAGGTGCTAATATGCTGATTCAAGGCCAGCAATGTT-GGACTTGAGAA-
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGG-CTT-A-AAG
* * * * * *
29704 A-GAAAAAGGTGCCAGTCTGCTGATTCAAGGCCAGCAATATCAGACTTAAAG
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGGCTTAAAG
*
29755 ATGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATT-GGACTTGAGAA-
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGG-CTT-A-AAG
* * **
29808 A-GA-AGAAGGTGCCAATATGCTGATTCAAGGCCAGCAACATTAGATTTAAAG
1 ATGATA-AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGGCTTAAAG
* * * * *
29859 TTGATAAAGGTGCTAATATGCTGATTTAAGGCCAGTGATATT-GGTTTAAA-
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGGCTTAAAG
*
29909 A-GATAAAGGTGCCAATGTGCTGATT
1 ATGATAAAGGTGCCAATATGCTGATT
29934 TGAGGCTAGC
Statistics
Matches: 442, Mismatches: 77, Indels: 57
0.77 0.13 0.10
Matches are distributed among these distances:
49 22 0.05
50 6 0.01
51 15 0.03
52 343 0.78
53 10 0.02
54 8 0.02
55 38 0.09
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.25
Consensus pattern (52 bp):
ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGGCTTAAAG
Found at i:29648 original size:104 final size:104
Alignment explanation
Indices: 29397--29956 Score: 671
Period size: 104 Copynumber: 5.4 Consensus size: 104
29387 GATGACAAAG
* *** * ** **
29397 GTGCCAATGTGCTGACTCAAGGCCAATGACATTAGACTCAAAGATGGCAAAGGTGTTAATATGCT
1 GTGCCAATGTGCTGATTCAAGGCCAGCAACATTAGACTTAAAGATGATAAAGGTGCCAATATGCT
* *
29462 GATTCAAAGCCAGCGATATTAGACTTGAGAAAGAAGAAGAA
66 GATTCAAGGCCAGCGATATTGGACTTGAGAAAGAAG-A-AA
* * * * *
29503 GGTGCCAATGTGCTGATTCAAGGCTAGCAACATTGGACTTAAAGTTGATAAAGGTGCCATTGTGC
1 -GTGCCAATGTGCTGATTCAAGGCCAGCAACATTAGACTTAAAGATGATAAAGGTGCCAATATGC
*
29568 TGATTCAAGGCCAACGATATTGGACTTGAGAAAGAAGAAA
65 TGATTCAAGGCCAGCGATATTGGACTTGAGAAAGAAGAAA
* * *
29608 GTGCCAATGTGCTGATTCAAGGCCAGCAATATTAAACTTAAAGATGATAAAGGTGCTAATATGCT
1 GTGCCAATGTGCTGATTCAAGGCCAGCAACATTAGACTTAAAGATGATAAAGGTGCCAATATGCT
* *
29673 GATTCAAGGCCAGCAATGTTGGACTTGAGAAAGAA-AAA
66 GATTCAAGGCCAGCGATATTGGACTTGAGAAAGAAGAAA
* * * *
29711 GGTGCCAGTCTGCTGATTCAAGGCCAGCAATATCAGACTTAAAGATGATAAAGGTGCCAATATGC
1 -GTGCCAATGTGCTGATTCAAGGCCAGCAACATTAGACTTAAAGATGATAAAGGTGCCAATATGC
* *
29776 TGATTCAAGGCTAGCGATATTGGACTTGAGAAAGAAGAAG
65 TGATTCAAGGCCAGCGATATTGGACTTGAGAAAGAAGAAA
* * * *
29816 GTGCCAATATGCTGATTCAAGGCCAGCAACATTAGATTTAAAGTTGATAAAGGTGCTAATATGCT
1 GTGCCAATGTGCTGATTCAAGGCCAGCAACATTAGACTTAAAGATGATAAAGGTGCCAATATGCT
* * * *
29881 GATTTAAGGCCAGTGATATTGG--TTTA-AAAGATA-AAG
66 GATTCAAGGCCAGCGATATTGGACTTGAGAAAGA-AGAAA
** * * *
29917 GTGCCAATGTGCTGATTTGAGGCTAGCAACGTCAGACTTA
1 GTGCCAATGTGCTGATTCAAGGCCAGCAACATTAGACTTA
29957 GAAGGAGATG
Statistics
Matches: 395, Mismatches: 55, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
101 41 0.10
102 4 0.01
103 3 0.01
104 258 0.65
105 4 0.01
106 1 0.00
107 84 0.21
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (104 bp):
GTGCCAATGTGCTGATTCAAGGCCAGCAACATTAGACTTAAAGATGATAAAGGTGCCAATATGCT
GATTCAAGGCCAGCGATATTGGACTTGAGAAAGAAGAAA
Found at i:29893 original size:156 final size:157
Alignment explanation
Indices: 29270--29945 Score: 602
Period size: 156 Copynumber: 4.3 Consensus size: 157
29260 TTAAGGATGC
* *
29270 AAAGAATGATAAAGGTGCCAATATGCTGATTCACA-ACTAGCAATATTAGGCTTGAAAATGAGAA
1 AAAG-ATGATAAAGGTGCCAATATGCTGATTCA-AGGCTAGCAATATTAGACTTG---A-GAGAA
* * *** * * *
29334 GAATGATAAGGGTGCCAATATGCTAATTTAAGGCCAATGACATTAGGCTTAAAGATGACAAAGGT
60 GAA-G--AA-GGTGCCAATATGCTGATTCAAGGCCAGCAACATTAGACTTAAAGTTGATAAAGGT
* * * *
29399 GCCAATGTGCTGACTCAAGGCCAATGACATTAGACTC
121 GCCAATGTGCTGATTCAAGGCCAACGATATTAGACTT
** ** * * *
29436 AAAGATGGCAAAGGTGTTAATATGCTGATTCAAAGCCAGCGATATTAGACTTGAGAAAGAAGAAG
1 AAAGATGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTAGACTTGAG--AGAAGAAG
* * * *
29501 AAGGTGCCAATGTGCTGATTCAAGGCTAGCAACATTGGACTTAAAGTTGATAAAGGTGCCATTGT
64 AAGGTGCCAATATGCTGATTCAAGGCCAGCAACATTAGACTTAAAGTTGATAAAGGTGCCAATGT
*
29566 GCTGATTCAAGGCCAACGATATTGGACTT
129 GCTGATTCAAGGCCAACGATATTAGACTT
* * * * * *
29595 GAGAA-A-GA-AGAAAGTGCCAATGTGCTGATTCAAGGCCAGCAATATTAAACTT-AAAGATGAT
1 -A-AAGATGATA-AAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTAGACTTGAGAGAAGA-
* ** * * *
29656 A-AAGGTGCTAATATGCTGATTCAAGGCCAGCAATGTTGGACTTGAGAA--AGAAAAAGGTGCCA
62 AGAAGGTGCCAATATGCTGATTCAAGGCCAGCAACATTAGACTT-A-AAGTTGATAAAGGTGCCA
* * * * *
29718 GTCTGCTGATTCAAGGCCAGCAATATCAGACTT
125 ATGTGCTGATTCAAGGCCAACGATATTAGACTT
* *
29751 AAAGATGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGACTTGAGA-AAGAAGAA
1 AAAGATGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTAGACTTGAGAGAAGAAGAA
* * *
29815 GGTGCCAATATGCTGATTCAAGGCCAGCAACATTAGATTTAAAGTTGATAAAGGTGCTAATATGC
66 GGTGCCAATATGCTGATTCAAGGCCAGCAACATTAGACTTAAAGTTGATAAAGGTGCCAATGTGC
* ** **
29880 TGATTTAAGGCCAGTGATATT-GGTTT
131 TGATTCAAGGCCAACGATATTAGACTT
* **
29906 AAA-A-GATAAAGGTGCCAATGTGCTGATTTGAGGCTAGCAA
1 AAAGATGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCAA
29946 CGTCAGACTT
Statistics
Matches: 418, Mismatches: 76, Indels: 45
0.78 0.14 0.08
Matches are distributed among these distances:
153 32 0.08
154 5 0.01
155 10 0.02
156 191 0.46
157 5 0.01
158 4 0.01
159 111 0.27
160 4 0.01
161 3 0.01
162 2 0.00
163 7 0.02
164 1 0.00
165 39 0.09
166 4 0.01
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (157 bp):
AAAGATGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTAGACTTGAGAGAAGAAGAA
GGTGCCAATATGCTGATTCAAGGCCAGCAACATTAGACTTAAAGTTGATAAAGGTGCCAATGTGC
TGATTCAAGGCCAACGATATTAGACTT
Found at i:30010 original size:32 final size:30
Alignment explanation
Indices: 29965--30114 Score: 165
Period size: 32 Copynumber: 4.7 Consensus size: 30
29955 TAGAAGGAGA
29965 TGCCACCAGCTTGTGTGGGCTTTTGAAAGGGT
1 TGCCACCA-CTTGTGTGGGC-TTTGAAAGGGT
** *
29997 TGCCACCGACTTGTGTGCACTTTAAGAAGGGT
1 TGCCACC-ACTTGTGTGGGCTTTGA-AAGGGT
* *
30029 TGCCACCAGCTAGTGTGGGCTTTGAAGGGGT
1 TGCCACCA-CTTGTGTGGGCTTTGAAAGGGT
**
30060 TGCCACCAACTTGTGTGGGCTTTGAAGAAAGT
1 TGCCACC-ACTTGTGTGGGCTTTGAA-AGGGT
30092 TGCCACCAACTTGTGTGGGCTTT
1 TGCCACC-ACTTGTGTGGGCTTT
30115 TGAAGAAGGT
Statistics
Matches: 101, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
31 33 0.33
32 67 0.66
33 1 0.01
ACGTcount: A:0.19, C:0.21, G:0.31, T:0.29
Consensus pattern (30 bp):
TGCCACCACTTGTGTGGGCTTTGAAAGGGT
Found at i:30072 original size:63 final size:65
Alignment explanation
Indices: 29956--30119 Score: 226
Period size: 63 Copynumber: 2.6 Consensus size: 65
29946 CGTCAGACTT
* * *
29956 AGAAGGAGATGCCACCAGCTTGTGTGGGCTTTTGAAAGGGTTGCCACCGACTTGTGTGCACTTT-
1 AGAAGG-GTTGCCACCAGCTTGTGTGGGCTTTTGAAGGGGTTGCCACCAACTTGTGTGCACTTTG
30020 A
65 A
* **
30021 AGAAGGGTTGCCACCAGCTAGTGTGGGC-TTTGAAGGGGTTGCCACCAACTTGTGTGGGCTTTGA
1 AGAAGGGTTGCCACCAGCTTGTGTGGGCTTTTGAAGGGGTTGCCACCAACTTGTGTGCACTTTGA
* *
30085 AGAA-AGTTGCCACCAACTTGTGTGGGCTTTTGAAG
1 AGAAGGGTTGCCACCAGCTTGTGTGGGCTTTTGAAG
30120 AAGGTTTCGC
Statistics
Matches: 88, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
63 50 0.57
64 32 0.36
65 6 0.07
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.27
Consensus pattern (65 bp):
AGAAGGGTTGCCACCAGCTTGTGTGGGCTTTTGAAGGGGTTGCCACCAACTTGTGTGCACTTTGA
Found at i:30328 original size:26 final size:27
Alignment explanation
Indices: 30266--30336 Score: 99
Period size: 26 Copynumber: 2.7 Consensus size: 27
30256 GGGTGACACG
* *
30266 GAGTTGTGGACTTAAAAGTGTGCCATA
1 GAGTTGTGGACTTAAAAGAGTGCCACA
* *
30293 GAATTATGGACTTAAAA-AGTGCCACA
1 GAGTTGTGGACTTAAAAGAGTGCCACA
30319 GAGTTGTGGACTTAAAAG
1 GAGTTGTGGACTTAAAAG
30337 GGAAAAGGTG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
26 22 0.59
27 15 0.41
ACGTcount: A:0.35, C:0.11, G:0.27, T:0.27
Consensus pattern (27 bp):
GAGTTGTGGACTTAAAAGAGTGCCACA
Found at i:30466 original size:34 final size:33
Alignment explanation
Indices: 30306--30664 Score: 254
Period size: 32 Copynumber: 10.8 Consensus size: 33
30296 TTATGGACTT
*
30306 AAAAA-GTGCCACAGAGTTGTGGACTTAAAAGG
1 AAAAAGGTGCCACAGAGTTGTGGACTTAAAAAG
* * * * * *
30338 GAAAAGGTGCTATAGAGTTATAGACTTAGAAAG
1 AAAAAGGTGCCACAGAGTTGTGGACTTAAAAAG
* *
30371 -AGAAGATGCCACAGAGTTGTGGACTT-AAAAG
1 AAAAAGGTGCCACAGAGTTGTGGACTTAAAAAG
* * *
30402 -GAAAGGATGCCACGGAGTTGTGGGCTTTAAAAAG
1 AAAAAGG-TGCCACAGAGTTGTGGAC-TTAAAAAG
* * *
30436 AAAAAAGGTGCCATAGAGTTGTAGACTTAAAAGGG
1 -AAAAAGGTGCCACAGAGTTGTGGACTTAAAA-AG
*
30471 AAAAA--TGCCAC-GAAGTTGTGGACTTAAAAGGG
1 AAAAAGGTGCCACAG-AGTTGTGGACTTAAAA-AG
** * *
30503 AAATGGGTGCCA-TGTAGTTGTGGGCTTTAAAAAG
1 AAAAAGGTGCCACAG-AGTTGTGGAC-TTAAAAAG
* *
30537 AAAAAGGTGTCACGGAGTTGTGGACTTAAAAGAG
1 AAAAAGGTGCCACAGAGTTGTGGACTTAAAA-AG
** *
30571 AAATGGGTGCCACAGGAGTTGTAGG-CTTTAAAAG
1 AAAAAGGTGCCACA-GAGTTGT-GGACTTAAAAAG
** *
30605 AAAAAGGTGCCATGGAGTTGTGGACTT-CAAAG
1 AAAAAGGTGCCACAGAGTTGTGGACTTAAAAAG
** *
30637 GGAAAGATGCCAC-GAAGTTGTGGACTTA
1 AAAAAGGTGCCACAG-AGTTGTGGACTTA
30665 GAGAAGAGAT
Statistics
Matches: 257, Mismatches: 51, Indels: 37
0.74 0.15 0.11
Matches are distributed among these distances:
31 9 0.04
32 93 0.36
33 39 0.15
34 74 0.29
35 35 0.14
36 7 0.03
ACGTcount: A:0.37, C:0.11, G:0.31, T:0.22
Consensus pattern (33 bp):
AAAAAGGTGCCACAGAGTTGTGGACTTAAAAAG
Found at i:30467 original size:67 final size:67
Alignment explanation
Indices: 30311--30631 Score: 266
Period size: 68 Copynumber: 4.8 Consensus size: 67
30301 GACTTAAAAA
* * * ** * * * *
30311 GTGCCACAGAGTTGTGGAC-TTAAAAGGGAAAAGGTGCTATAGAGTTATAGACTTAGAAAGAGAA
1 GTGCCACAGAGTTGTAGACTTTAAAA-GAAAAAGGTGCCACGGAGTTGTGGACTTAAAAAGAAAA
30375 --G
65 TGG
* * * *
30376 ATGCCACAGAGTTGTGGAC-TTAAAAG-GAAAGGATGCCACGGAGTTGTGGGCTTTAAAAAGAAA
1 GTGCCACAGAGTTGTAGACTTTAAAAGAAAAAGG-TGCCACGGAGTTGTGGAC-TTAAAAAGAAA
**
30439 AAAG
64 ATGG
* * * *
30443 GTGCCATAGAGTTGTAGAC-TTAAAAGGGAAAAA--TGCCACGAAGTTGTGGACTTAAAAGGGAA
1 GTGCCACAGAGTTGTAGACTTTAAAA--GAAAAAGGTGCCACGGAGTTGTGGACTTAAAAAGAAA
30505 ATGG
64 ATGG
* * * *
30509 GTGCCA-TGTAGTTGTGGGCTTTAAAAAGAAAAAGGTGTCACGGAGTTGTGGACTT-AAAAGAGA
1 GTGCCACAG-AGTTGTAGACTTT-AAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAAGA-A
30572 AATGG
63 AATGG
* *
30577 GTGCCACAGGAGTTGTAGGCTTTAAAAGAAAAAGGTGCCATGGAGTTGTGGACTT
1 GTGCCACA-GAGTTGTAGACTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGACTT
30632 CAAAGGGAAA
Statistics
Matches: 210, Mismatches: 31, Indels: 27
0.78 0.12 0.10
Matches are distributed among these distances:
63 5 0.02
64 13 0.06
65 35 0.17
66 31 0.15
67 45 0.21
68 64 0.30
69 13 0.06
70 4 0.02
ACGTcount: A:0.36, C:0.11, G:0.31, T:0.22
Consensus pattern (67 bp):
GTGCCACAGAGTTGTAGACTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAAGAAAAT
GG
Found at i:30566 original size:68 final size:68
Alignment explanation
Indices: 30377--30641 Score: 269
Period size: 68 Copynumber: 3.9 Consensus size: 68
30367 AAAGAGAAGA
* * * *
30377 TGCCACA-GAGTTGT-GGAC-TTAAAAG-GAAAGGATGCCACGGAGTTGTGGGCTTTAAAAAGAA
1 TGCCACAGGAGTTGTAGG-CTTTAAAAGAAAAAGG-TGCCACGGAGTTGTGGAC-TTAAAAGGGA
**
30438 AAAAGG
63 AATGGG
* * *
30444 TGCCATA-GAGTTGTAGAC-TTAAAAGGGAAAAA--TGCCACGAAGTTGTGGACTTAAAAGGGAA
1 TGCCACAGGAGTTGTAGGCTTTAAAA--GAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGGAA
30505 ATGGG
64 ATGGG
* * * * *
30510 TGCCA-TGTAGTTGTGGGCTTTAAAAAGAAAAAGGTGTCACGGAGTTGTGGACTTAAAAGAGAAA
1 TGCCACAGGAGTTGTAGGCTTT-AAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGGAAA
30574 TGGG
65 TGGG
* *
30578 TGCCACAGGAGTTGTAGGCTTTAAAAGAAAAAGGTGCCATGGAGTTGTGGACTTCAAAGGGAAA
1 TGCCACAGGAGTTGTAGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGGAAA
30642 GATGCCACGA
Statistics
Matches: 165, Mismatches: 23, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
66 31 0.19
67 38 0.23
68 79 0.48
69 14 0.08
70 3 0.02
ACGTcount: A:0.36, C:0.11, G:0.31, T:0.22
Consensus pattern (68 bp):
TGCCACAGGAGTTGTAGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGGAAAT
GGG
Found at i:30729 original size:33 final size:33
Alignment explanation
Indices: 30672--30793 Score: 160
Period size: 33 Copynumber: 3.8 Consensus size: 33
30662 TTAGAGAAGA
* * *
30672 GATGCCATTGAGTCATGGATTTGGAAGAAAAAG
1 GATGCCATTAAGTCGTGGACTTGGAAGAAAAAG
*
30705 GATGCCAATAAGTCGTGGACTTGGAAGAAAAAG
1 GATGCCATTAAGTCGTGGACTTGGAAGAAAAAG
*
30738 GATGCCATTAAGTCGTGGACTTGG-AG-AAGA-
1 GATGCCATTAAGTCGTGGACTTGGAAGAAAAAG
* *
30768 GATGCCATTGAGTCGTGGGCTTGGAA
1 GATGCCATTAAGTCGTGGACTTGGAA
30794 AAGAGATGCC
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
30 22 0.28
31 4 0.05
32 2 0.03
33 52 0.65
ACGTcount: A:0.32, C:0.12, G:0.33, T:0.23
Consensus pattern (33 bp):
GATGCCATTAAGTCGTGGACTTGGAAGAAAAAG
Found at i:30849 original size:29 final size:30
Alignment explanation
Indices: 30641--30848 Score: 159
Period size: 30 Copynumber: 6.8 Consensus size: 30
30631 TCAAAGGGAA
* * *
30641 AGATGCCAC-GAAGTTGTGGACTTAGAGAAG
1 AGATGCCACTG-AGTCGTGGACTTGGAAAAG
* * * *
30671 AGATGCCATTGAGTCATGGATTTGGAAGAAAA
1 AGATGCCACTGAGTCGTGGACTTGG-A-AAAG
* * *
30703 AGGATGCCAATAAGTCGTGGACTTGGAAGAAAA
1 A-GATGCCACTGAGTCGTGGACTTGG-A-AAAG
* * *
30736 AGGATGCCATTAAGTCGTGGACTTGGAGAAG
1 A-GATGCCACTGAGTCGTGGACTTGGAAAAG
* *
30767 AGATGCCATTGAGTCGTGGGCTTGGAAAAG
1 AGATGCCACTGAGTCGTGGACTTGGAAAAG
* * *
30797 AGATGCCACTGAGTTGTGGACTTTGATAAG
1 AGATGCCACTGAGTCGTGGACTTGGAAAAG
* *
30827 -GGTGCCACAGAGTCGTGGACTT
1 AGATGCCACTGAGTCGTGGACTT
30849 TTGAAAAAAG
Statistics
Matches: 149, Mismatches: 25, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
29 19 0.13
30 69 0.46
31 5 0.03
32 4 0.03
33 52 0.35
ACGTcount: A:0.31, C:0.13, G:0.33, T:0.23
Consensus pattern (30 bp):
AGATGCCACTGAGTCGTGGACTTGGAAAAG
Found at i:30855 original size:60 final size:60
Alignment explanation
Indices: 30641--30848 Score: 152
Period size: 63 Copynumber: 3.4 Consensus size: 60
30631 TCAAAGGGAA
* * * * * * * *
30641 AGATGCCAC-GAAGTTGTGGACTTAGAGAAGAGATGCCATTGAGTCATGGATTTGGAAGAAAA
1 AGATGCCACAG-AGTCGTGGACTTGGAAAAGAGATGCCACTAAGTCGTGGACTTGG-AG-AAG
* * *
30703 AGGATGCCA-ATAAGTCGTGGACTTGGAAGAAAAAGGATGCCATTAAGTCGTGGACTTGGAGAAG
1 A-GATGCCACA-GAGTCGTGGACTTGG-A-AAAGA-GATGCCACTAAGTCGTGGACTTGGAGAAG
** * * * * *
30767 AGATGCCATTGAGTCGTGGGCTTGGAAAAGAGATGCCACTGAGTTGTGGACTTTGATAAG
1 AGATGCCACAGAGTCGTGGACTTGGAAAAGAGATGCCACTAAGTCGTGGACTTGGAGAAG
*
30827 -GGTGCCACAGAGTCGTGGACTT
1 AGATGCCACAGAGTCGTGGACTT
30849 TTGAAAAAAG
Statistics
Matches: 117, Mismatches: 22, Indels: 17
0.75 0.14 0.11
Matches are distributed among these distances:
59 18 0.15
60 24 0.21
61 4 0.03
62 2 0.02
63 39 0.33
64 4 0.03
65 5 0.04
66 21 0.18
ACGTcount: A:0.31, C:0.13, G:0.33, T:0.23
Consensus pattern (60 bp):
AGATGCCACAGAGTCGTGGACTTGGAAAAGAGATGCCACTAAGTCGTGGACTTGGAGAAG
Found at i:32478 original size:19 final size:19
Alignment explanation
Indices: 32435--32507 Score: 85
Period size: 20 Copynumber: 3.7 Consensus size: 19
32425 CACACCTAGA
*
32435 TGTATCGATACAT-TATGCTT
1 TGTATCGATACATGT-T-CAT
32455 TGTATCGATACATGTTCAT
1 TGTATCGATACATGTTCAT
**
32474 TGTATCGATACATGGACAAT
1 TGTATCGATACATGTTC-AT
32494 TGTATCGATACATG
1 TGTATCGATACATG
32508 AAACTGGCAG
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
19 17 0.35
20 30 0.62
21 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATGTTCAT
Found at i:32570 original size:13 final size:13
Alignment explanation
Indices: 32552--32604 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
32542 CGATACATGG
32552 TACATTGTATCGA
1 TACATTGTATCGA
*
32565 TACATTGTATCAA
1 TACATTGTATCGA
32578 TACA-TG-AT-G-
1 TACATTGTATCGA
32587 -A-ATTGTATCGA
1 TACATTGTATCGA
32598 TACATTG
1 TACATTG
32605 CTTCTAACGG
Statistics
Matches: 32, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
7 1 0.03
8 3 0.09
9 2 0.06
10 1 0.03
11 2 0.06
12 3 0.09
13 20 0.62
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:32581 original size:33 final size:33
Alignment explanation
Indices: 32536--32604 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
32526 CTACCACTAT
* *
32536 TTGTATCGATACATGGT-ACATTGTATCGATACA
1 TTGTATCAATACATGATGA-ATTGTATCGATACA
32569 TTGTATCAATACATGATGAATTGTATCGATACA
1 TTGTATCAATACATGATGAATTGTATCGATACA
32602 TTG
1 TTG
32605 CTTCTAACGG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 32 0.97
34 1 0.03
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (33 bp):
TTGTATCAATACATGATGAATTGTATCGATACA
Done.