genome.fa.s2119.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2119
Parameters: 2 7 7 80 10 50 1000
Length:  54676

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8--87	28	2.9	28	77	1	90	32	25	17	25	1.97
65--597	30	17.4	31	79	8	549	23	29	15	32	1.95
107--597	92	5.3	92	81	7	545	23	29	15	32	1.95
80--597	61	8.5	61	76	12	476	23	28	15	32	1.95
79--597	155	3.4	150	82	8	611	23	28	15	32	1.95
669--859	33	5.9	33	78	8	187	21	29	10	37	1.88
669--801	67	2.0	67	80	1	151	21	30	10	38	1.87
736--856	60	2.0	60	86	0	170	24	32	10	32	1.90
862--952	43	2.1	43	87	0	128	27	24	17	30	1.97
1024--1124	39	2.6	39	90	0	157	32	27	16	22	1.96
850--1358	274	1.9	268	83	6	666	27	25	17	29	1.98
1252--1789	87	6.3	87	82	7	636	26	27	19	25	1.99
1252--1789	171	3.1	169	82	8	590	26	27	19	25	1.99
1797--2041	50	5.0	49	78	11	220	23	27	16	32	1.96
1797--2041	98	2.5	97	82	8	298	23	27	16	32	1.96
7434--7471	18	2.2	17	86	13	51	84	0	13	2	0.73
7925--8217	156	1.9	156	85	2	408	29	12	20	36	1.90
13040--13066	8	3.4	8	100	0	54	40	11	0	48	1.39
20215--20289	17	4.2	17	83	9	105	44	6	26	22	1.78
20242--20304	20	3.3	20	82	13	96	46	9	25	19	1.80
20225--20304	37	2.2	37	97	0	151	45	8	25	21	1.80
26432--26478	17	2.8	17	100	0	94	82	0	10	6	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26468--26497	16	1.9	16	93	6	53	66	0	13	20	1.24
28690--30493	42	42.9	42	68	12	501	19	28	16	34	1.94
29069--30275	84	14.4	83	77	4	892	19	28	17	34	1.94
30214--30445	85	2.7	86	81	4	274	20	27	16	35	1.94
30844--31091	44	5.8	44	74	9	174	15	30	14	39	1.88
30850--31143	44	6.8	44	72	8	142	15	30	14	38	1.88
30864--31149	86	3.3	85	81	6	310	15	29	15	39	1.88
31711--31756	16	2.8	17	80	6	58	78	4	0	17	0.91
31703--31757	26	2.2	25	83	3	65	76	5	0	18	0.97
31819--31883	20	3.4	20	81	12	91	46	9	26	18	1.79
31810--31883	37	2.0	37	97	0	139	44	8	27	20	1.79
34231--34256	13	2.0	13	100	0	52	38	15	15	30	1.88
34209--34276	33	2.1	32	91	2	109	32	13	19	35	1.90
34930--34974	22	2.0	22	83	8	56	31	26	4	37	1.76
36643--36683	22	2.0	21	86	13	59	41	4	21	31	1.74
42934--42959	13	2.0	13	100	0	52	38	15	15	30	1.88
42912--42978	33	2.1	32	88	2	98	32	13	17	35	1.89
46267--46317	20	2.6	20	90	3	77	29	13	17	39	1.88
46372--46421	20	2.5	20	86	0	64	38	16	16	30	1.90
46719--46785	37	1.9	35	88	11	102	29	25	11	32	1.92
47245--47270	13	2.0	13	100	0	52	30	15	15	38	1.88
47225--47288	32	2.0	33	87	3	94	28	14	17	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48013--48038	12	2.2	12	100	0	52	50	7	0	42	1.31
49196--49220	13	1.9	13	100	0	50	32	16	16	36	1.90
50736--50901	84	2.0	84	83	7	212	24	19	3	52	1.62
52425--52491	37	1.9	35	88	11	102	29	25	11	32	1.92
52951--52976	13	2.0	13	100	0	52	30	15	15	38	1.88
52931--52994	32	2.0	33	87	3	94	28	14	17	40	1.88
53137--53590	230	2.0	230	95	0	809	39	13	8	37	1.76
53894--53982	35	2.5	34	83	7	99	26	31	1	40	1.64

Tables:   1

The End!