genome.fa.s2122.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2122
Parameters: 2 7 7 80 10 50 1000
Length:  141392

Tables:   1   2   

This is table  1  of  2  ( 124 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3546--3571	13	2.0	13	100	0	52	30	15	15	38	1.88
3526--3589	32	2.0	33	90	3	103	28	14	15	42	1.86
3619--3673	21	2.7	21	82	2	67	30	18	14	36	1.91
4215--4296	40	2.0	40	82	13	98	34	25	6	34	1.81
5663--5705	20	2.1	20	82	4	50	9	27	44	18	1.80
12346--12371	13	2.0	13	100	0	52	30	15	15	38	1.88
12326--12389	32	2.0	32	87	3	92	28	14	14	43	1.83
14113--14180	33	2.1	32	91	2	109	33	13	16	36	1.87
14135--14160	13	2.0	13	100	0	52	38	15	15	30	1.88
14202--14254	20	2.6	21	84	3	72	28	16	15	39	1.89
15145--15185	21	2.0	21	85	9	57	41	12	7	39	1.70
15267--15401	53	2.5	53	95	1	234	37	17	17	27	1.93
15446--15496	21	2.4	22	93	6	95	27	23	11	37	1.90
15465--15552	34	2.8	31	75	14	101	29	23	9	37	1.86
19761--19837	20	3.8	20	84	0	109	32	11	11	44	1.77
29533--29642	32	3.4	32	67	16	100	31	18	19	30	1.95
29397--29642	104	2.2	110	88	9	360	30	17	17	34	1.93
29397--29577	52	3.5	52	96	0	335	29	17	17	36	1.92
29583--29610	13	2.2	13	100	0	56	39	17	14	28	1.89
29532--29679	65	2.3	65	97	0	278	33	17	18	30	1.95
29651--29709	13	4.9	13	69	26	58	35	15	16	32	1.90
29584--29730	34	4.4	34	76	14	162	34	16	18	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29752--29849	19	5.7	19	67	27	67	36	15	12	35	1.85
29771--29795	13	1.9	13	100	0	50	32	16	16	36	1.90
29750--29847	32	3.0	32	90	1	160	35	15	12	36	1.85
35480--35566	13	6.6	13	70	4	50	34	11	18	35	1.87
35574--36270	28	24.5	28	81	7	642	29	30	17	23	1.97
35574--36270	57	12.3	57	84	5	801	29	30	17	23	1.97
35574--36239	84	7.8	84	84	5	761	29	30	17	23	1.97
36122--36301	31	6.0	31	83	8	139	30	30	16	22	1.96
37452--37513	20	3.1	20	77	9	63	32	12	16	38	1.86
37431--37485	28	2.0	28	85	0	74	30	9	18	41	1.81
39497--39579	31	2.7	30	80	12	89	26	31	10	31	1.90
39533--39823	29	9.6	29	74	11	179	26	26	11	35	1.90
39533--39765	123	1.9	119	80	10	265	26	27	11	34	1.91
39651--39797	32	4.6	33	78	9	144	24	26	10	38	1.88
39533--39840	61	5.0	60	75	9	212	26	26	11	36	1.90
39707--39840	60	2.2	61	86	2	180	24	26	10	38	1.88
39841--40230	33	12.0	32	81	7	396	29	31	16	22	1.96
39841--40230	131	3.0	130	83	5	443	29	31	16	22	1.96
39841--40230	64	6.0	63	84	6	410	29	31	16	22	1.96
40300--40488	52	3.6	51	80	7	200	23	23	15	37	1.93
40338--40490	53	2.9	52	85	1	207	23	24	15	36	1.94
40300--40490	105	1.8	106	86	3	278	23	23	15	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41072--41164	21	4.6	20	79	5	89	36	10	18	34	1.85
41206--41313	52	2.1	51	89	3	164	27	17	13	40	1.88
44105--44131	13	2.1	13	100	0	54	29	14	14	40	1.86
44119--44172	19	2.7	19	77	5	54	33	16	18	31	1.93
50365--50393	13	2.2	13	100	0	58	27	13	17	41	1.87
52237--52275	18	2.1	19	95	4	71	53	0	33	12	1.39
52271--52340	36	1.9	37	88	2	106	37	1	24	37	1.64
52984--53036	20	2.7	19	88	11	72	37	13	18	30	1.89
54317--54341	13	1.9	13	100	0	50	32	16	16	36	1.90
54329--54381	20	2.6	21	78	3	63	39	13	16	30	1.87
54431--54456	13	2.0	13	100	0	52	30	15	15	38	1.88
54411--54478	33	2.1	32	91	2	109	35	19	13	32	1.90
60609--60646	13	2.9	13	88	0	58	31	13	18	36	1.89
61080--61131	20	2.4	21	87	9	70	19	50	26	3	1.65
61536--61578	20	2.2	20	100	0	86	34	11	23	30	1.90
63273--63325	20	2.7	20	93	0	88	39	20	9	30	1.84
63240--63305	33	2.0	32	88	2	96	36	18	12	33	1.88
72798--72860	28	2.2	28	94	0	108	38	14	12	34	1.84
73354--73392	20	1.9	21	84	5	53	35	12	10	41	1.77
73521--73703	96	1.9	96	85	1	251	38	9	22	29	1.86
76182--76232	20	2.5	21	83	3	68	29	17	13	39	1.88
77806--77847	13	3.3	12	81	12	57	28	16	19	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77931--77961	13	2.4	13	94	0	53	35	16	12	35	1.87
84053--84104	20	2.6	20	100	0	104	30	23	11	34	1.90
85947--85985	18	2.1	19	90	4	62	51	0	33	15	1.44
86138--86231	46	2.0	46	95	0	170	40	9	18	31	1.82
86463--86503	22	1.9	22	85	5	57	41	7	9	41	1.66
86724--86754	13	2.4	13	94	0	53	35	16	12	35	1.87
86708--86774	33	2.0	32	88	11	100	35	13	17	32	1.89
94088--94126	13	3.0	13	92	0	69	35	17	15	30	1.91
94161--94205	23	2.0	22	86	4	63	37	6	28	26	1.82
94218--94248	10	3.1	10	90	0	53	41	6	29	22	1.78
94272--94408	53	2.6	53	94	1	229	27	18	17	36	1.93
94396--94450	21	2.7	20	80	5	65	30	14	16	38	1.89
94489--94529	21	2.0	21	85	9	57	39	9	12	39	1.76
96592--96634	22	2.0	22	86	4	61	44	13	4	37	1.65
98715--98931	84	2.6	84	82	2	247	31	14	10	43	1.79
98823--98887	28	2.3	28	89	0	103	29	16	9	44	1.79
98722--98972	85	3.0	85	79	7	260	30	14	10	44	1.79
98916--98988	28	2.6	28	77	2	74	32	15	9	42	1.79
102782--102884	52	2.0	51	88	1	152	25	6	18	49	1.72
104682--104754	20	3.7	21	78	10	73	32	15	15	36	1.88
104784--104848	33	2.0	32	88	11	96	33	15	18	32	1.92
104804--104828	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106224--106277	16	3.3	16	79	7	56	3	20	1	74	1.07
106228--106275	20	2.3	20	82	3	51	4	22	2	70	1.15
107181--107220	7	5.9	7	88	5	55	82	0	12	5	0.82
107173--107219	20	2.4	20	89	10	71	80	0	12	6	0.88
112955--112985	3	10.3	3	100	0	62	67	0	0	32	0.91
113823--113892	29	2.3	29	81	16	72	47	4	0	48	1.21
114821--114855	16	2.2	16	100	0	70	17	17	25	40	1.90
114897--114935	6	6.5	6	87	0	51	7	17	38	35	1.79
115338--115362	13	1.9	13	100	0	50	36	16	16	32	1.90
115321--115384	33	1.9	33	87	0	92	35	12	12	39	1.81
115425--115449	13	1.9	13	100	0	50	32	16	16	36	1.90
118623--118692	31	2.3	30	79	16	81	38	1	2	57	1.23
118676--118732	18	3.0	19	82	12	64	43	3	0	52	1.18
122804--122829	13	2.0	13	100	0	52	38	15	15	30	1.88
123299--123328	9	3.3	9	100	0	60	40	0	0	60	0.97
123325--123351	4	6.8	4	100	0	54	25	0	0	74	0.83
125633--125666	17	2.0	17	88	0	50	58	2	5	32	1.37
128585--128611	13	2.1	13	100	0	54	55	0	14	29	1.40
129089--129124	2	18.0	2	100	0	72	50	0	0	50	1.00
129902--129930	13	2.2	13	100	0	58	41	24	6	27	1.80
129931--129983	14	3.8	14	69	0	52	41	9	22	26	1.84
130032--130083	19	2.7	19	78	3	59	42	11	13	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130391--130428	2	19.0	2	84	10	51	44	2	2	50	1.30
130734--130795	33	1.9	32	90	3	97	29	12	16	41	1.85
130765--130820	19	2.9	19	89	10	87	33	14	17	33	1.90
130765--130819	20	2.8	20	91	8	87	32	14	18	34	1.91
130867--130891	13	1.9	13	100	0	50	32	8	16	44	1.76
130848--130916	33	2.1	33	89	5	104	30	11	18	39	1.87
133122--133173	21	2.5	21	81	6	70	59	3	11	25	1.49
137077--137103	13	2.1	13	100	0	54	29	14	14	40	1.86
137233--137273	21	2.0	22	85	9	59	31	24	0	43	1.54
139626--139652	13	2.1	13	100	0	54	29	14	14	40	1.86

Tables:   1   2