Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2123
Parameters: 2 7 7 80 10 50 1000
Length:  54017

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--419
27
15.0
27
78
15
397
22
33
14
29
1.93
452--1179
32
23.1
32
91
4
1128
31
34
18
15
1.92
1703--1777
20
3.8
20
76
0
78
36
13
10
40
1.79
1703--1780
40
2.0
39
84
2
102
35
12
11
39
1.80
2685--2738
20
2.5
23
82
17
87
18
11
9
61
1.55
2694--2739
20
2.3
20
100
0
92
19
8
8
63
1.49
2702--2745
20
2.2
20
91
0
70
22
11
11
54
1.68
6171--6237
18
4.0
17
72
21
61
41
0
0
58
0.98
6171--6247
11
6.6
12
71
19
56
40
0
0
59
0.97
6178--6238
31
2.0
31
87
6
88
40
0
0
59
0.98
8674--8722
22
2.2
22
82
10
55
44
2
0
53
1.12
11377--11403
6
4.5
6
100
0
54
14
0
0
85
0.61
11985--12033
22
2.3
22
89
3
73
44
2
0
53
1.12
11985--12033
21
2.3
21
89
3
53
44
2
0
53
1.12
15723--15747
2
12.5
2
100
0
50
52
0
0
48
1.00
15849--15908
30
1.9
32
90
6
97
56
1
0
41
1.09
17776--17828
16
3.3
16
74
10
54
56
0
0
43
0.99
17822--17877
13
4.1
13
77
20
60
57
0
3
39
1.16
19416--19491
19
3.8
20
79
6
75
43
2
3
50
1.34
19416--19491
40
1.9
38
82
10
91
43
2
3
50
1.34
20892--20952
30
2.1
27
88
8
86
45
0
0
54
1.00
23319--23348
14
2.1
14
93
0
51
40
50
10
0
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23732--23797
10
7.0
10
72
19
52
53
1
1
43
1.19
24728--24761
17
2.0
17
88
11
52
29
0
2
67
1.05
24732--24770
18
2.2
18
86
9
53
30
0
2
66
1.05
24823--24862
19
2.1
19
90
4
62
55
0
0
45
0.99
26892--26955
29
2.2
28
78
10
67
37
0
0
62
0.95
32321--32393
22
3.4
21
77
7
58
12
13
0
73
1.09
32457--32517
26
2.2
28
72
16
65
47
3
0
49
1.18
32464--32514
26
2.0
26
84
7
68
52
3
0
43
1.19
32575--32658
19
4.2
19
82
13
73
54
1
1
42
1.15
32618--32714
31
3.4
29
77
17
98
52
1
3
43
1.23
35579--35615
2
18.5
2
100
0
74
0
51
0
48
1.00
45476--45513
19
2.0
19
90
10
60
55
2
0
42
1.14
46006--46047
2
21.0
2
95
0
57
42
0
7
50
1.30
46525--46654
10
13.2
10
80
9
115
49
6
1
42
1.39
46520--46654
24
5.6
24
87
5
184
48
7
1
42
1.40
46519--46654
8
17.0
8
86
0
155
49
7
1
41
1.40
47227--47289
21
3.0
21
79
9
58
39
1
1
57
1.18
47661--47949
94
3.1
94
98
1
551
39
7
23
29
1.83
48993--49040
2
24.0
2
91
0
78
0
45
4
50
1.21

Tables:   1

The End!