Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold213
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 483536
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.34
File 1 of 4
Found at i:11527 original size:14 final size:15
Alignment explanation
Indices: 11508--11536 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
11498 TAGACAAGTC
11508 AAGTTGA-AAAACTT
1 AAGTTGACAAAACTT
11522 AAGTTGACAAAACTT
1 AAGTTGACAAAACTT
11537 TGGGATTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.48, C:0.10, G:0.14, T:0.28
Consensus pattern (15 bp):
AAGTTGACAAAACTT
Found at i:14823 original size:44 final size:44
Alignment explanation
Indices: 14760--14849 Score: 144
Period size: 44 Copynumber: 2.0 Consensus size: 44
14750 ATTCTCTAAA
* *
14760 AAGACATAAATATATAACGTTGTGGAGTCTGATAGACATAGGGT
1 AAGACATAAATATATAACGTTGTGGAGTCTGACAGACATAAGGT
* *
14804 AAGACATAATTATATAACGTTGTGGAGTTTGACAGACATAAGGT
1 AAGACATAAATATATAACGTTGTGGAGTCTGACAGACATAAGGT
14848 AA
1 AA
14850 TTGTTAAATG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (44 bp):
AAGACATAAATATATAACGTTGTGGAGTCTGACAGACATAAGGT
Found at i:17124 original size:13 final size:13
Alignment explanation
Indices: 17106--17131 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
17096 CAATTTTTTG
17106 TGTATCGATACAT
1 TGTATCGATACAT
17119 TGTATCGATACAT
1 TGTATCGATACAT
17132 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:17216 original size:20 final size:20
Alignment explanation
Indices: 17191--17263 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
17181 CAACTTTTTT
17191 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
17211 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
17232 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
17252 ATGTATCGATAC
1 ATGTATCGATAC
17264 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:17229 original size:41 final size:41
Alignment explanation
Indices: 17170--17263 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
17160 CTGCCAAGAA
*
17170 ATGTATCGATACAACTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
*
17211 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
17252 ATGTATCGATAC
1 ATGTATCGATAC
17264 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
Found at i:17245 original size:21 final size:21
Alignment explanation
Indices: 17170--17245 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
17160 CTGCCAAGAA
* *
17170 ATGTATCGATACAACTTTTTT
1 ATGTATCGATACATCTTTTTC
****
17191 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
17211 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
17232 ATGTATCGATACAT
1 ATGTATCGATACAT
17246 TGCAACATGT
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:19724 original size:13 final size:13
Alignment explanation
Indices: 19706--19744 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
19696 ATAATCACCC
*
19706 TGTATCGATACAG
1 TGTATCGATACAA
19719 TGTATCGATACAA
1 TGTATCGATACAA
19732 TGTATCGATACAA
1 TGTATCGATACAA
19745 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:19755 original size:20 final size:20
Alignment explanation
Indices: 19730--19808 Score: 70
Period size: 20 Copynumber: 3.7 Consensus size: 20
19720 GTATCGATAC
19730 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
19750 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
*
19775 GATGTATCGATACACAA-AAA
1 AATGTATCGATACA-AAGAAA
*
19795 CATGTATCGATACA
1 AATGTATCGATACA
19809 TTTTGGACAT
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
20 32 0.65
25 16 0.33
26 1 0.02
ACGTcount: A:0.46, C:0.15, G:0.14, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:21843 original size:15 final size:15
Alignment explanation
Indices: 21823--21853 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
21813 ATTTCGTTTG
*
21823 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
21838 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
21853 G
1 G
21854 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:25934 original size:13 final size:13
Alignment explanation
Indices: 25916--25941 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
25906 CAATTTTTTG
25916 TGTATCGATACAT
1 TGTATCGATACAT
25929 TGTATCGATACAT
1 TGTATCGATACAT
25942 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:26026 original size:20 final size:20
Alignment explanation
Indices: 26001--26073 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
25991 CAACTTTTTT
26001 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
26021 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
26042 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
26062 ATGTATCGATAC
1 ATGTATCGATAC
26074 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:26039 original size:41 final size:41
Alignment explanation
Indices: 25980--26073 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
25970 CTGCCAAGAA
*
25980 ATGTATCGATACAACTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
*
26021 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
26062 ATGTATCGATAC
1 ATGTATCGATAC
26074 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
Found at i:26055 original size:21 final size:21
Alignment explanation
Indices: 25980--26055 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
25970 CTGCCAAGAA
* *
25980 ATGTATCGATACAACTTTTTT
1 ATGTATCGATACATCTTTTTC
****
26001 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
26021 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
26042 ATGTATCGATACAT
1 ATGTATCGATACAT
26056 TGCAACATGT
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:28723 original size:207 final size:207
Alignment explanation
Indices: 28363--28758 Score: 650
Period size: 207 Copynumber: 1.9 Consensus size: 207
28353 GCACAACTTC
*
28363 ATGAATTGGCTATTGATCCTAGGTAAATGCTGACTAAGGACGAAGTACGTTAGTGTCCAAAATGT
1 ATGAATTGGCTATTGATCCTAGGTAAATGCTGACTAAGGACGAAGTACGTCAGTGTCCAAAATGT
* * * * *
28428 ATTCTATACCTGATGAATGAACCTGAATGCACTATTCAACAAGAATTTCCACCATCTCTGTCACC
66 ATTCTATAACTAATGAATGAACCTGAACGCACTATTCAACAAGAATTTCCACCACCTCTGCCACC
*
28493 TTCTACAGAGGATATCCCAAGTCTAT-TCGAGGATGCTGAGGAAGCTTAGATTACACATCGAAGT
131 TTCTACAGAGGATATCCCAAGTCTATCT-GAGGATGCTGAGGAAGCCTAGATTACACATCGAAGT
28557 ACAACTTCGATGA
195 ACAACTTCGATGA
* *
28570 ATGAATTGGCTATTGATCCTAGGTACATGCTGACTAAGGATGAAGTACGTCAGTGTCCAAAATGT
1 ATGAATTGGCTATTGATCCTAGGTAAATGCTGACTAAGGACGAAGTACGTCAGTGTCCAAAATGT
** *
28635 ATTCTATAACTAATGAATGAACCTGAACGCACTATTTGACAAGAATTTCCACCACCTCTGCCACT
66 ATTCTATAACTAATGAATGAACCTGAACGCACTATTCAACAAGAATTTCCACCACCTCTGCCACC
* *
28700 TTCTACAGAGGATATCTCAAGTCTATCTGAGGATGTTGAGGAAGCCTAGATTACACATC
131 TTCTACAGAGGATATCCCAAGTCTATCTGAGGATGCTGAGGAAGCCTAGATTACACATC
28759 AAAAAAGGCA
Statistics
Matches: 174, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
207 173 0.99
208 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.28
Consensus pattern (207 bp):
ATGAATTGGCTATTGATCCTAGGTAAATGCTGACTAAGGACGAAGTACGTCAGTGTCCAAAATGT
ATTCTATAACTAATGAATGAACCTGAACGCACTATTCAACAAGAATTTCCACCACCTCTGCCACC
TTCTACAGAGGATATCCCAAGTCTATCTGAGGATGCTGAGGAAGCCTAGATTACACATCGAAGTA
CAACTTCGATGA
Found at i:29509 original size:17 final size:17
Alignment explanation
Indices: 29460--29510 Score: 57
Period size: 17 Copynumber: 3.0 Consensus size: 17
29450 ATAGCATTAT
**
29460 AAATTAATAAGAATGCA
1 AAATTAATAAGAATATA
* *
29477 AATTTAATAAAAATATA
1 AAATTAATAAGAATATA
*
29494 AAATTAATAAGCATATA
1 AAATTAATAAGAATATA
29511 TTTTTTAAAA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.61, C:0.04, G:0.06, T:0.29
Consensus pattern (17 bp):
AAATTAATAAGAATATA
Found at i:29541 original size:14 final size:15
Alignment explanation
Indices: 29516--29550 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
29506 ATATATTTTT
*
29516 TAAAAATATAATAAC
1 TAAAAATATAATAAA
29531 TAAAAAT-TAATAAA
1 TAAAAATATAATAAA
29545 TAAAAA
1 TAAAAA
29551 ATTATAAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAATATAATAAA
Found at i:29738 original size:23 final size:24
Alignment explanation
Indices: 29712--29758 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
29702 AAAAAAAATT
*
29712 TCATATTTAACAAAAATTT-ATTA
1 TCATAATTAACAAAAATTTGATTA
**
29735 TCATAATTAATTAAAATTTGATTA
1 TCATAATTAACAAAAATTTGATTA
29759 CAAAAAGTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (24 bp):
TCATAATTAACAAAAATTTGATTA
Found at i:29835 original size:16 final size:16
Alignment explanation
Indices: 29814--29845 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
29804 AATCACTTAA
*
29814 TATTTATTAGTATAAT
1 TATTTATTAATATAAT
29830 TATTTATTAATATAAT
1 TATTTATTAATATAAT
29846 AAATTTAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (16 bp):
TATTTATTAATATAAT
Found at i:31233 original size:6 final size:6
Alignment explanation
Indices: 31222--31249 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
31212 TTTTTGATTG
31222 TTTGTC TTTGTC TTTGTC TTTGTC TTTG
1 TTTGTC TTTGTC TTTGTC TTTGTC TTTG
31250 GTTTTTTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.14, G:0.18, T:0.68
Consensus pattern (6 bp):
TTTGTC
Found at i:32439 original size:25 final size:25
Alignment explanation
Indices: 32411--32460 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
32401 CACAAGGCCC
32411 AAAACACAATTGTTTAGCATGGTCT
1 AAAACACAATTGTTTAGCATGGTCT
32436 AAAACACAATTGTTTAGCATGGTCT
1 AAAACACAATTGTTTAGCATGGTCT
32461 TTCAACATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (25 bp):
AAAACACAATTGTTTAGCATGGTCT
Found at i:34508 original size:32 final size:32
Alignment explanation
Indices: 34472--34576 Score: 83
Period size: 32 Copynumber: 3.2 Consensus size: 32
34462 AATCACATAT
34472 CCAAAAATCAAATGGGTTACTCTAAACGATAC
1 CCAAAAATCAAATGGGTTACTCTAAACGATAC
* *
34504 CCAAACTAGAAT-AAAT---TTACTCTAAACCCTACATTC
1 CC-AA--A-AATCAAATGGGTTACTCTAAA--C--GATAC
*
34540 CCAAAAATCAGATGGGTTACTCTAAACGATAC
1 CCAAAAATCAAATGGGTTACTCTAAACGATAC
34572 CCAAA
1 CCAAA
34577 CTAGAATAAT
Statistics
Matches: 56, Mismatches: 5, Indels: 24
0.66 0.06 0.28
Matches are distributed among these distances:
32 23 0.41
33 6 0.11
34 2 0.04
35 7 0.12
36 18 0.32
ACGTcount: A:0.43, C:0.25, G:0.10, T:0.23
Consensus pattern (32 bp):
CCAAAAATCAAATGGGTTACTCTAAACGATAC
Found at i:34581 original size:68 final size:68
Alignment explanation
Indices: 34472--34670 Score: 283
Period size: 68 Copynumber: 2.9 Consensus size: 68
34462 AATCACATAT
34472 CCAAAAATCAAATGGGTTACTCTAAACGATACCCAAACTAGAATAAATTTACTCTAAACCCTACA
1 CCAAAAATCAAATGGGTTACTCTAAACGATACCCAAACTAGAATAAATTTACTCTAAACCCTACA
34537 TTC
66 TTC
*
34540 CCAAAAATCAGATGGGTTACTCTAAACGATACCCAAACTAGAAT-AATGTTACTCTAAACCCTAC
1 CCAAAAATCAAATGGGTTACTCTAAACGATACCCAAACTAGAATAAAT-TTACTCTAAACCCTAC
*
34604 ATTT
65 ATTC
* * * * * * * **
34608 CCAAAAATAAAATGGGTTAATTTGAACGACACCCAAACTAAAACAAGGTTACTCTAAACCCTA
1 CCAAAAATCAAATGGGTTACTCTAAACGATACCCAAACTAGAATAAATTTACTCTAAACCCTA
34671 AACTTAGAAA
Statistics
Matches: 117, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
67 3 0.03
68 113 0.97
69 1 0.01
ACGTcount: A:0.43, C:0.24, G:0.10, T:0.24
Consensus pattern (68 bp):
CCAAAAATCAAATGGGTTACTCTAAACGATACCCAAACTAGAATAAATTTACTCTAAACCCTACA
TTC
Found at i:34591 original size:32 final size:33
Alignment explanation
Indices: 34487--34598 Score: 99
Period size: 32 Copynumber: 3.4 Consensus size: 33
34477 AATCAAATGG
34487 GTTACTCTAAACGATACCCAAACTAGAATAAAT
1 GTTACTCTAAACGATACCCAAACTAGAATAAAT
** * *
34520 -TTACTCTAAACCCTACATTCCCAA--A-AATCAGAT
1 GTTACTCTAAACGATAC---CCAAACTAGAAT-AAAT
34553 GGGTTACTCTAAACGATACCCAAACTAGAAT-AAT
1 --GTTACTCTAAACGATACCCAAACTAGAATAAAT
34587 GTTACTCTAAAC
1 GTTACTCTAAAC
34599 CCTACATTTC
Statistics
Matches: 61, Mismatches: 8, Indels: 21
0.68 0.09 0.23
Matches are distributed among these distances:
32 29 0.48
33 8 0.13
34 2 0.03
35 5 0.08
36 17 0.28
ACGTcount: A:0.41, C:0.24, G:0.09, T:0.26
Consensus pattern (33 bp):
GTTACTCTAAACGATACCCAAACTAGAATAAAT
Found at i:34916 original size:74 final size:74
Alignment explanation
Indices: 34827--34998 Score: 283
Period size: 74 Copynumber: 2.3 Consensus size: 74
34817 GGACATGAAA
*
34827 CAAACCTGAGTTAAAGAGATGGATTGGGTGGCCTCTGATCTTGAAAACTTCAACGAAATGGCAAT
1 CAAACCTGAGTTAAAGAGATGGATTGCGTGGCCTCTGATCTTGAAAACTTCAACGAAATGGCAAT
34892 ACAGGGAAG
66 ACAGGGAAG
* * *
34901 CAAACCTGAGTTAAAGAGATGGATTGCGTGGCCTCTGATCTTGAAAACTTGAGCGAAATGGTAAT
1 CAAACCTGAGTTAAAGAGATGGATTGCGTGGCCTCTGATCTTGAAAACTTCAACGAAATGGCAAT
*
34966 GCAGGGAAG
66 ACAGGGAAG
*
34975 CAAACCTGAGTT-GAGAGATGGATT
1 CAAACCTGAGTTAAAGAGATGGATT
34999 TGCTTTGCGA
Statistics
Matches: 92, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
73 11 0.12
74 81 0.88
ACGTcount: A:0.34, C:0.15, G:0.28, T:0.23
Consensus pattern (74 bp):
CAAACCTGAGTTAAAGAGATGGATTGCGTGGCCTCTGATCTTGAAAACTTCAACGAAATGGCAAT
ACAGGGAAG
Found at i:35315 original size:18 final size:18
Alignment explanation
Indices: 35263--35317 Score: 60
Period size: 17 Copynumber: 3.1 Consensus size: 18
35253 TAATATTTAA
*
35263 TTTAGATTT-AAATAAATT
1 TTTA-ATTTAAAATAAAAT
*
35281 TTTAATATAAAAT-AAAT
1 TTTAATTTAAAATAAAAT
*
35298 TTTCATTTAAAATAAAAT
1 TTTAATTTAAAATAAAAT
35316 TT
1 TT
35318 ATTTCAATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
17 17 0.55
18 14 0.45
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (18 bp):
TTTAATTTAAAATAAAAT
Found at i:35355 original size:24 final size:25
Alignment explanation
Indices: 35309--35357 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
35299 TTCATTTAAA
*
35309 ATAAAATTTATTTCAATACAATAAT
1 ATAAAATTTATTTCAATAAAATAAT
35334 ATAAATATTTATTT-AA-AAAATAAT
1 ATAAA-ATTTATTTCAATAAAATAAT
35358 TCAAAACTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 7 0.32
25 7 0.32
26 8 0.36
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (25 bp):
ATAAAATTTATTTCAATAAAATAAT
Found at i:35542 original size:166 final size:160
Alignment explanation
Indices: 35316--35629 Score: 421
Period size: 166 Copynumber: 1.9 Consensus size: 160
35306 AAAATAAAAT
* *
35316 TTATTTCAATACAATAATATAAATATTTATTTAAAAAATAATTCAAAACTTTAATAATATTTTAA
1 TTATTTCAATACAATAATATAAATATTAATTTAAAAAATAATTCAAAACTTTAATAATATTTCAA
* * * *
35381 CCACAAAATGTGTATGATAAACAAGTCTTTATTATATAAATCACAATTTAATTCATTACTTTTTT
66 CCACAAAATAT-T-CGATAAACAAGTCTTTATAATATAAATCACAATTTAATTCATTACTTTTCT
* *
35446 ATTTATTAAAATTTTAATATAAAACAATTTTTC
129 ATTTACT-AAAGTTTAATATAAAACAATTTTTC
* * * **
35479 TTATTTCAATATAATAAAAATATAAGTATTAATTTAAAAAATAATTCAAAGCTTTTTTAATATTT
1 TTATTTCAATACAAT---AATATAAATATTAATTTAAAAAATAATTCAAAACTTTAATAATATTT
* * * *
35544 CAACCACAAAATATTCGATAAGCAAGTCTTTGTAATGTAAATTACAATTTAATTCATTACTTTTC
63 CAACCACAAAATATTCGATAAACAAGTCTTTATAATATAAATCACAATTTAATTCATTACTTTTC
35609 TATTTACTAAAGTTTAATATA
128 TATTTACTAAAGTTTAATATA
35630 TTTGTTATTA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
163 26 0.20
164 50 0.38
165 1 0.01
166 54 0.41
ACGTcount: A:0.44, C:0.10, G:0.04, T:0.43
Consensus pattern (160 bp):
TTATTTCAATACAATAATATAAATATTAATTTAAAAAATAATTCAAAACTTTAATAATATTTCAA
CCACAAAATATTCGATAAACAAGTCTTTATAATATAAATCACAATTTAATTCATTACTTTTCTAT
TTACTAAAGTTTAATATAAAACAATTTTTC
Found at i:36202 original size:24 final size:21
Alignment explanation
Indices: 36153--36203 Score: 57
Period size: 24 Copynumber: 2.3 Consensus size: 21
36143 TATCAAGAAA
36153 AAAATAATAAATAAATCAAAC
1 AAAATAATAAATAAATCAAAC
* *
36174 TAAATAATCAATATATAATTAAAC
1 AAAATAAT-AA-ATA-AATCAAAC
36198 AAAATA
1 AAAATA
36204 TACCGTATGC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 7 0.29
22 2 0.08
23 3 0.12
24 12 0.50
ACGTcount: A:0.67, C:0.08, G:0.00, T:0.25
Consensus pattern (21 bp):
AAAATAATAAATAAATCAAAC
Found at i:41961 original size:52 final size:52
Alignment explanation
Indices: 41883--42006 Score: 194
Period size: 52 Copynumber: 2.4 Consensus size: 52
41873 CCCGAAATAT
* * *
41883 GAAAATTTACCTGCATGTATCGATACATTTCATAGTGTATCGATGCATCTGG
1 GAAAATTTGCCTGCATGTATAGATACATTTCATAGTGTATCGATACATCTGG
* *
41935 GAAAATTTGCCTGTATGTATAGATACATTTCATAGTGTATCGATACATTTGG
1 GAAAATTTGCCTGCATGTATAGATACATTTCATAGTGTATCGATACATCTGG
*
41987 GCAAATTTGCCTGCATGTAT
1 GAAAATTTGCCTGCATGTAT
42007 CAATACAAAG
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.36
Consensus pattern (52 bp):
GAAAATTTGCCTGCATGTATAGATACATTTCATAGTGTATCGATACATCTGG
Found at i:42040 original size:13 final size:13
Alignment explanation
Indices: 42022--42046 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
42012 CAAAGATCAG
42022 TGTATCGATACAA
1 TGTATCGATACAA
42035 TGTATCGATACA
1 TGTATCGATACA
42047 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:42967 original size:49 final size:49
Alignment explanation
Indices: 42804--43523 Score: 634
Period size: 49 Copynumber: 14.8 Consensus size: 49
42794 AAAAGGATGT
* * * * * *
42804 CAATGTGCTGATTCACGGTCAGCGACATTAGACTTGAAGATGAGAAGAATGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT--GAAG-GTGC
* * * ** * *
42856 CAATGTGCTGATTCAAGGCCAACAACATTGGGTTTTGAAGATAACGAAGGCGC
1 CAATGTGCTGATTCAAGGCCAGCGATATT-GGACTTAAAGAT---GAAGGTGC
* * *
42909 CAATATGCTGATTCAAGGCCAGAGATATTAGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * **
42958 CAATGTGCTGATTCAAGGCTAGCGACATTAGACTTAAAAGATGACAAAGGCAC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTT-AAAGATG---AAGGTGC
*
43011 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * *
43060 TAATGTGCTGATTCAAGGCCATCGACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* **
43109 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * *
43158 TAATATGCTGATTCAAGGTCAGCGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * **
43201 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAAACAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * *
43250 CAATATGCGGATTCAAGGCCAGCGATATTGGGCTTAAAGGTGACAAGG-GC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG--AAGGTGC
*
43300 GCTAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G-A--TGC
1 -C-AATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * **
43345 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAA-AACAAGGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAA-GGTGC
* * * * *
43394 CAATATGCTGATTCAATGCCAACAATATTGGA-TT-----TAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * * *
43437 TAATGTGCTGATTCAAGGCCAGAGATATTGGTCTTAAAGAAGAAGATGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* *
43486 CAATATGCTGATTCAGGGCCAGCGATATTGGACTTAAA
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAA
43524 AGAAGATGCC
Statistics
Matches: 551, Mismatches: 88, Indels: 61
0.79 0.13 0.09
Matches are distributed among these distances:
43 98 0.18
44 8 0.01
45 3 0.01
46 2 0.00
47 1 0.00
48 2 0.00
49 274 0.50
50 9 0.02
51 7 0.01
52 72 0.13
53 71 0.13
54 4 0.01
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.24
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
Found at i:43244 original size:92 final size:92
Alignment explanation
Indices: 43010--43523 Score: 422
Period size: 92 Copynumber: 5.4 Consensus size: 92
43000 GACAAAGGCA
* * ** *
43010 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCTAATGTGCTGATTCA
1 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACAAAGGTGCTAATATGCTGATTCA
* *
43075 AGGCCATCGACATTGGACTTAAAGATAAAGGTG
66 AGGCCAGCGATATTGGAC-T-----TAAAGGTG
43108 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACAAAGGTGCTAATATGCTGATTCA
1 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACAAAGGTGCTAATATGCTGATTCA
*
43173 AGGTCAGCGATATTGGACTTAAAGGTG
66 AGGCCAGCGATATTGGACTTAAAGGTG
* * * *
43200 CCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAAACAAAGGTGCCAATATGCGGATTCA
1 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACAAAGGTGCTAATATGCTGATTCA
*
43265 AGGCCAGCGATATTGGGCTTAAAGGTGACAAGGG
66 AGGCCAGCGATATTGGACTTAAAGGT-------G
* * * *
43299 CGCTAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG----A--TGCCAATGTGCTGATT
1 C-C-AATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACAAAGGTGCTAATATGCTGATT
* *
43358 CAAGGCCAGCGACATTGGTCTTAAAAACAAGGGTG
64 CAAGGCCAGCGATATTGGACTT----A-AA-GGTG
* * * * * * *
43393 CCAATATGCTGATTCAATGCCAACAATATTGGA-TT-----TAAAGGTGCTAATGTGCTGATTCA
1 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACAAAGGTGCTAATATGCTGATTCA
* *
43452 AGGCCAGAGATATTGGTCTTAAAGAAGAAGATG
66 AGGCCAGCGATATTGGACTT--A-AAG--G-TG
* * *
43485 CCAATATGCTGATTCAGGGCCAGCGATATTGGACTTAAA
1 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAA
43524 AGAAGATGCC
Statistics
Matches: 356, Mismatches: 33, Indels: 56
0.80 0.07 0.13
Matches are distributed among these distances:
89 1 0.00
90 6 0.02
91 3 0.01
92 187 0.53
93 3 0.01
94 2 0.01
95 34 0.10
97 2 0.01
98 75 0.21
99 3 0.01
100 3 0.01
101 37 0.10
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (92 bp):
CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACAAAGGTGCTAATATGCTGATTCA
AGGCCAGCGATATTGGACTTAAAGGTG
Found at i:43362 original size:144 final size:144
Alignment explanation
Indices: 42907--43524 Score: 684
Period size: 144 Copynumber: 4.3 Consensus size: 144
42897 TAACGAAGGC
* * * * * ** *
42907 GCCAATATGCTGATTCAAGGCCAGAGATATTAGACTTAAAGATGAAGGTGCCAATGTGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAAACAAAGGTGCCAATATGCTGATTC
* * * * *
42972 AAGGCTAGCGACATTAGACTTAAAAGATGACAAAGGCACCAATATGCTGATTCAAGGCCAGCGAT
66 AAGGCCAGCGACATTGGACTT-AAAGGTGACAAAGGCGCTAATATGCTGATTCAAGGCCAGCGAT
43037 ATTGGACTTAAAGATGAAGGT
130 ATTGGACTT-AA-A-G-A--T
* * * * *
43058 GCTAATGTGCTGATTCAAGGCCATCGACATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAAACAAAGGTGCCAATATGCTGATTC
* *
43123 AAGGCCAGCGACATTGGACTTAAA---GACAAAGGTGCTAATATGCTGATTCAAGGTCAGCGATA
66 AAGGCCAGCGACATTGGACTTAAAGGTGACAAAGGCGCTAATATGCTGATTCAAGGCCAGCGATA
*
43185 TTGGACTTAAAGGT
131 TTGGACTTAAAGAT
* *
43199 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAAACAAAGGTGCCAATATGCGGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAAACAAAGGTGCCAATATGCTGATTC
* * *
43264 AAGGCCAGCGATATTGGGCTTAAAGGTGACAAGGGCGCTAATATGCTGATTCAAGGCCAGCGATA
66 AAGGCCAGCGACATTGGACTTAAAGGTGACAAAGGCGCTAATATGCTGATTCAAGGCCAGCGATA
43329 TTGGACTTAAAGAT
131 TTGGACTTAAAGAT
* *
43343 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAAACAAGGGTGCCAATATGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAAACAAAGGTGCCAATATGCTGATTC
* * * * * * *
43408 AATGCCAACAATATTGGA-TT-----T---AAAGGTGCTAATGTGCTGATTCAAGGCCAGAGATA
66 AAGGCCAGCGACATTGGACTTAAAGGTGACAAAGGCGCTAATATGCTGATTCAAGGCCAGCGATA
*
43464 TTGGTCTTAAAGAAGAAGAT
131 TTGGACTT-----A-AAGAT
* * *
43484 GCCAATATGCTGATTCAGGGCCAGCGATATTGGACTTAAAA
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAA
43525 GAAGATGCCA
Statistics
Matches: 416, Mismatches: 42, Indels: 28
0.86 0.09 0.06
Matches are distributed among these distances:
135 38 0.09
138 1 0.00
140 1 0.00
141 123 0.30
143 2 0.00
144 126 0.30
145 1 0.00
146 2 0.00
147 42 0.10
150 3 0.01
151 77 0.19
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.24
Consensus pattern (144 bp):
GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAAACAAAGGTGCCAATATGCTGATTC
AAGGCCAGCGACATTGGACTTAAAGGTGACAAAGGCGCTAATATGCTGATTCAAGGCCAGCGATA
TTGGACTTAAAGAT
Found at i:43405 original size:236 final size:234
Alignment explanation
Indices: 42848--43523 Score: 827
Period size: 236 Copynumber: 2.8 Consensus size: 234
42838 TGAAGATGAG
* * * *
42848 AAGAATGCCAATGTGCTGATTCAAGGCCAACAACATTGGGTTTTGAAGATAACGAAGGCGCCAAT
1 AAGAATGCCAATGTGCTGATTCAAGGCCAGCGACATT-GGTCTT-AA-A-AAC-AAGGTGCCAAT
* * *
42913 ATGCTGATTCAAGGCCAGAGATATTAGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCT
61 ATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGCCAATGTGCTGATTCAAGGCC
* * **
42978 AGCGACATTAGACTTAAAAGATGACAAAGGCACCAATATGCTGATTCAAGGCCAGCGATATTGGA
120 AGCGACATTGGTCTT-AAAGA--ACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
* * *
43043 CTTAAAGATGAAGGTGCTAATGTGCTGATTCAAGGCCATCGACATTGGACTTA
182 CTTAAAGATGAAGGCGCTAATATGCTGATTCAAGGCCAGCGACATTGGACTTA
* * *
43096 AAGATAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACAAAGGTGCTAA
1 AAG---AA--TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAAAC-AAGGTGCCAA
*
43161 TATGCTGATTCAAGGTCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGA
60 TATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGA
* * *
43226 CATTGGTCTTAAA-AACAAAGGTGCCAATATGCGGATTCAAGGCCAGCGATATTGGGCTTAAAGG
125 CATTGGTCTTAAAGAACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA
*
43290 TGACAAGGGCGCTAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
190 TG--AA-GGCGCTAATATGCTGATTCAAGGCCAGCGACATTGGACTTA
43338 AAG-ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAAACAAGGGTGCCAATATGC
1 AAGAATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAAACAA-GGTGCCAATATGC
* * * * * * *
43402 TGATTCAATGCCAACAATATTGGATTTAAAGGTGCTAATGTGCTGATTCAAGGCCAGAGATATTG
65 TGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTG
* * *
43467 GTCTTAAAGAA-GAAGATGCCAATATGCTGATTCAGGGCCAGCGATATTGGACTTAAA
130 GTCTTAAAGAACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA
43524 AGAAGATGCC
Statistics
Matches: 379, Mismatches: 39, Indels: 32
0.84 0.09 0.07
Matches are distributed among these distances:
235 2 0.01
236 160 0.42
237 2 0.01
238 1 0.00
239 47 0.12
241 3 0.01
242 43 0.11
243 39 0.10
245 1 0.00
248 3 0.01
249 39 0.10
250 1 0.00
251 4 0.01
252 4 0.01
253 30 0.08
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.24
Consensus pattern (234 bp):
AAGAATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAAACAAGGTGCCAATATGCT
GATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGG
TCTTAAAGAACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
CGCTAATATGCTGATTCAAGGCCAGCGACATTGGACTTA
Found at i:43632 original size:35 final size:34
Alignment explanation
Indices: 43583--43660 Score: 95
Period size: 35 Copynumber: 2.3 Consensus size: 34
43573 TGGGCTTTTG
* *
43583 AAAAGG-AGAAAGATGCCACGGAGTTATGGACCTA
1 AAAAGGAAAAAAGATGCCACGAAGTTATGGA-CTA
* * *
43617 AAAAGGAAAAAAGATGTCACGAAGTTGTGGACTT
1 AAAAGGAAAAAAGATGCCACGAAGTTATGGACTA
43651 AAAAGGAAAA
1 AAAAGGAAAA
43661 GGTGCCAAGG
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
34 18 0.47
35 20 0.53
ACGTcount: A:0.47, C:0.10, G:0.27, T:0.15
Consensus pattern (34 bp):
AAAAGGAAAAAAGATGCCACGAAGTTATGGACTA
Found at i:43701 original size:101 final size:101
Alignment explanation
Indices: 43572--44058 Score: 524
Period size: 101 Copynumber: 4.8 Consensus size: 101
43562 CCACTGATTT
* * * * * * *
43572 GTGGGCTTTTGAAAAGGAGAAAGATGCCACGGAGTTATGGAC-CTAAAAAGGAAAAAAGATGTCA
1 GTGGGC-TTTGAAAA-GAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAA-G--AAAAGGTGCCA
* * *
43636 CGAAGTTGTGGAC-TT-AAAAGGAAAAGGTGCCAAGGAGTG
61 CGAAGTGGTGGGCTTTGAAAAGAAAAAGGTGCCAAGGAGTG
* *
43675 GTGGGCTTTGAAAAGGAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAGGTGCCACGAGG
1 GTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAGGTGCCACGAAG
* *
43740 TGGTGGGCTTTGAAAAGAAAAAGGTGCTACA-GAGTT
66 TGGTGGGCTTTGAAAAGAAAAAGGTGCCA-AGGAGTG
* * * * *
43776 GTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTGGTGGGCTTTGAAAAGGAAAAGGTGCTACGGA
1 GTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTT-AAAAAGAAAAGGTGCCACGAA
* * *
43841 GTTGTGGGCTTTAAAAAG-AAAAGGTGCCACGGAGTG
65 GTGGTGGGCTTTGAAAAGAAAAAGGTGCCAAGGAGTG
43877 GTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCAC-AG
1 GTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAG-AAAAGGTGCCACGA-
* *
43941 AGTGGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTT
64 AGTGGTGGGCTTTGAAAAGAAAAAGGTGCCAAGGAGTG
* * * *
43979 GTGGGCTTTGAAGAAAAGAAAAAAGTGCCACGAAGTTGTGGGCTTT--GAAGAAAAGATGCCACT
1 GTGGGCTTT---GAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAGGTGCCAC-
* *
44042 G-AGTCGTGGACTTTGAA
62 GAAGTGGTGGGCTTTGAA
44059 GAAAAGATGC
Statistics
Matches: 330, Mismatches: 40, Indels: 29
0.83 0.10 0.07
Matches are distributed among these distances:
99 19 0.06
100 7 0.02
101 164 0.50
102 99 0.30
103 9 0.03
105 32 0.10
ACGTcount: A:0.34, C:0.11, G:0.34, T:0.20
Consensus pattern (101 bp):
GTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAGGTGCCACGAAG
TGGTGGGCTTTGAAAAGAAAAAGGTGCCAAGGAGTG
Found at i:43727 original size:67 final size:68
Alignment explanation
Indices: 43624--44027 Score: 568
Period size: 67 Copynumber: 6.0 Consensus size: 68
43614 CTAAAAAGGA
* * * * *
43624 AAAAAGATGTCACGAAGTTGTGGAC-TT-AAAAGGAAAAGGTGCCAAGGAGTGGTGGGCTTTGAA
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCAAGGAGTGGTGGGCTTTGAA
43687 AAG
66 AAG
* *
43690 GAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAG-AAAAGGTGCC-ACGAGGTGGTGGGCTTTGA
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCAAGGA-GTGGTGGGCTTTGA
43753 AAAG
65 AAAG
* * *
43757 AAAAAGGTGCTACAGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTGGTGGGCTTTGAA
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCAAGGAGTGGTGGGCTTTGAA
43822 AAG
66 AAG
* * *
43825 GAAAAGGTGCTACGGAGTTGTGGGCTTTAAAAAG-AAAAGGTGCCACGGAGTGGTGGGCTTTGAA
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCAAGGAGTGGTGGGCTTTGAA
43889 AAG
66 AAG
43892 AAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACA-GAGTGGTGGGCTTTGA
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCA-AGGAGTGGTGGGCTTTGA
43956 AAAG
65 AAAG
* * * *
43960 AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAGAAAAGAAAAAAGTGCCACGAAGTTGTGGGCTTT
1 AAAAAGGTGCCACGGAGTTGTGGGCTTT--A-AAAAGAAAAAGGTGCCAAGGAGTGGTGGGCTTT
44025 GAA
63 GAA
44028 GAAAAGATGC
Statistics
Matches: 307, Mismatches: 20, Indels: 17
0.89 0.06 0.05
Matches are distributed among these distances:
66 23 0.07
67 126 0.41
68 124 0.40
69 2 0.01
70 1 0.00
71 31 0.10
ACGTcount: A:0.34, C:0.11, G:0.35, T:0.20
Consensus pattern (68 bp):
AAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCAAGGAGTGGTGGGCTTTGAA
AAG
Found at i:43808 original size:135 final size:135
Alignment explanation
Indices: 43639--44027 Score: 613
Period size: 135 Copynumber: 2.9 Consensus size: 135
43629 GATGTCACGA
* * *
43639 AGTTGTGGAC-TT-AAAAGGAAAAGGTGCCAAGGAGTGGTGGGCTTTGAAAAGGAAAAGGTGCCA
1 AGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTGGTGGGCTTTGAAAAGGAAAAGGTGCCA
43702 CGGAGTTGTGGGCTTTAAAAAGAAAAGGTGCCACGAGGTGGTGGGCTTTGAAAAGAAAAAGGTGC
66 CGGAGTTGTGGGCTTTAAAAAGAAAAGGTGCCACGAGGTGGTGGGCTTTGAAAAGAAAAAGGTGC
*
43767 TACAG
131 CACAG
*
43772 AGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTGGTGGGCTTTGAAAAGGAAAAGGTGCTA
1 AGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTGGTGGGCTTTGAAAAGGAAAAGGTGCCA
43837 CGGAGTTGTGGGCTTTAAAAAGAAAAGGTGCCACG-GAGTGGTGGGCTTTGAAAAGAAAAAGGTG
66 CGGAGTTGTGGGCTTTAAAAAGAAAAGGTGCCACGAG-GTGGTGGGCTTTGAAAAGAAAAAGGTG
*
43901 CCACGG
130 CCACAG
* *
43907 AGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACAGAGTGGTGGGCTTTGAAAAGAAAAAGGTGCCA
1 AGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTGGTGGGCTTTGAAAAGGAAAAGGTGCCA
* * *
43972 CGGAGTTGTGGGCTTTGAAGAAAAGAAAAAAGTGCCACGAAGTTGTGGGCTTTGAA
66 CGGAGTTGTGGGCTTT--A-AAAAG-AAAAGGTGCCACGAGGTGGTGGGCTTTGAA
44028 GAAAAGATGC
Statistics
Matches: 236, Mismatches: 12, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
133 9 0.04
134 3 0.01
135 192 0.81
137 1 0.00
138 5 0.02
139 26 0.11
ACGTcount: A:0.34, C:0.11, G:0.35, T:0.20
Consensus pattern (135 bp):
AGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTGGTGGGCTTTGAAAAGGAAAAGGTGCCA
CGGAGTTGTGGGCTTTAAAAAGAAAAGGTGCCACGAGGTGGTGGGCTTTGAAAAGAAAAAGGTGC
CACAG
Found at i:43983 original size:34 final size:34
Alignment explanation
Indices: 43555--44058 Score: 549
Period size: 34 Copynumber: 14.8 Consensus size: 34
43545 TGGGCTTTTG
* * *
43555 AAGGTTGCCACTGATTTGTGGGCTTTTGAAAAGGAGA
1 AAGG-TGCCACGGAGTTGTGGGC-TTTGAAAA-GAAA
* * * * *
43592 AAGATGCCACGGAGTTATGGAC-CTAAAAAGGAAAA
1 AAGGTGCCACGGAGTTGTGGGCTTTGAAAA-G-AAA
* * * * *
43627 AAGATGTCACGAAGTTGTGGAC-TT-AAAAGGAA
1 AAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAA
* * *
43659 AAGGTGCCAAGGAGTGGTGGGCTTTGAAAAGGAA
1 AAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAA
*
43693 AAGGTGCCACGGAGTTGTGGGCTTTAAAAAG-AA
1 AAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAA
*
43726 AAGGTGCCAC-GAGGTGGTGGGCTTTGAAAAGAAA
1 AAGGTGCCACGGA-GTTGTGGGCTTTGAAAAGAAA
* * *
43760 AAGGTGCTACAGAGTTGTGGGCTTTAAAAAGAAA
1 AAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAA
* *
43794 AAGGTGCCACGGAGTGGTGGGCTTTGAAAAGGAA
1 AAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAA
* *
43828 AAGGTGCTACGGAGTTGTGGGCTTTAAAAAG-AA
1 AAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAA
*
43861 AAGGTGCCACGGAGTGGTGGGCTTTGAAAAGAAA
1 AAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAA
*
43895 AAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAA
1 AAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAA
* *
43929 AAGGTGCCACAGAGTGGTGGGCTTTGAAAAGAAA
1 AAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAA
43963 AAGGTGCCACGGAGTTGTGGGCTTTGAAGAAAAGAAA
1 AAGGTGCCACGGAGTTGTGGGCTTT---GAAAAGAAA
* *
44000 AAAGTGCCACGAAGTTGTGGGCTTTG--AAG-AA
1 AAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAA
* * * *
44031 AAGATGCCACTGAGTCGTGGACTTTGAA
1 AAGGTGCCACGGAGTTGTGGGCTTTGAA
44059 GAAAAGATGC
Statistics
Matches: 402, Mismatches: 53, Indels: 28
0.83 0.11 0.06
Matches are distributed among these distances:
31 22 0.05
32 23 0.06
33 61 0.15
34 223 0.55
35 24 0.06
36 14 0.03
37 35 0.09
ACGTcount: A:0.34, C:0.12, G:0.34, T:0.21
Consensus pattern (34 bp):
AAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAA
Found at i:44056 original size:31 final size:31
Alignment explanation
Indices: 43999--44209 Score: 270
Period size: 31 Copynumber: 6.9 Consensus size: 31
43989 AAGAAAAGAA
* *
43999 AAAAG-TGCCAC-GAAGTTGTGGGCTTTGAAG
1 AAAAGATGCCACTG-AGTCGTGGACTTTGAAG
44029 AAAAGATGCCACTGAGTCGTGGACTTTGAAG
1 AAAAGATGCCACTGAGTCGTGGACTTTGAAG
* * *
44060 AAAAGATGCCACTAAGTCGTAGACTTTG-GG
1 AAAAGATGCCACTGAGTCGTGGACTTTGAAG
44090 ACAAA-ATGCCACTGAGTCGTGGACTTTGAAG
1 A-AAAGATGCCACTGAGTCGTGGACTTTGAAG
*
44121 AAAATATGCCACTGAGTCGTGGACTTTGAA-
1 AAAAGATGCCACTGAGTCGTGGACTTTGAAG
* * *
44151 AAGAGATTGCCACTGAGTTGTGGACTTTGGAG
1 AAAAGA-TGCCACTGAGTCGTGGACTTTGAAG
*
44183 AAAAAATGCCACTGAGTCGTGGACTTT
1 AAAAGATGCCACTGAGTCGTGGACTTT
44210 AAAAAGGTAT
Statistics
Matches: 159, Mismatches: 15, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
30 35 0.22
31 119 0.75
32 5 0.03
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (31 bp):
AAAAGATGCCACTGAGTCGTGGACTTTGAAG
Found at i:44162 original size:92 final size:93
Alignment explanation
Indices: 43995--44209 Score: 310
Period size: 92 Copynumber: 2.3 Consensus size: 93
43985 TTTGAAGAAA
* *
43995 AGAAAAAAGTGCCAC-GAAGTTGTGGGCTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAA
1 AGAAAAAA-TGCCACTG-AGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAA
44059 GAAAAGATGCCACTAAGTCGTAGACTTTGG
64 GAAAAGATGCCACTAAGTCGTAGACTTTGG
* *
44089 -GACAAAATGCCACTGAGTCGTGGACTTTGAAGAAAATATGCCACTGAGTCGTGGACTTTGAA-A
1 AGAAAAAATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGA
* * * *
44152 AGAGATTGCCACTGAGTTGTGGACTTTGG
66 AAAGA-TGCCACTAAGTCGTAGACTTTGG
44181 AGAAAAAATGCCACTGAGTCGTGGACTTT
1 AGAAAAAATGCCACTGAGTCGTGGACTTT
44210 AAAAAGGTAT
Statistics
Matches: 109, Mismatches: 9, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
91 5 0.05
92 70 0.64
93 34 0.31
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.24
Consensus pattern (93 bp):
AGAAAAAATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGA
AAAGATGCCACTAAGTCGTAGACTTTGG
Found at i:52568 original size:13 final size:13
Alignment explanation
Indices: 52550--52633 Score: 51
Period size: 13 Copynumber: 5.5 Consensus size: 13
52540 AGCTTCGTAG
52550 CGATACATTGTAT
1 CGATACATTGTAT
52563 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
52582 CGATACATTGTAT
1 CGATACATTGTAT
52595 CGATACAACACTTATGTAT
1 CGAT---ACA--T-TGTAT
*
52614 CGATATATTGTAT
1 CGATACATTGTAT
52627 CGATACA
1 CGATACA
52634 AATCGTTGAA
Statistics
Matches: 57, Mismatches: 2, Indels: 24
0.69 0.02 0.29
Matches are distributed among these distances:
13 25 0.44
14 1 0.02
15 2 0.04
16 7 0.12
17 2 0.04
18 1 0.02
19 19 0.33
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.35
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:52582 original size:19 final size:18
Alignment explanation
Indices: 52558--52618 Score: 69
Period size: 19 Copynumber: 3.6 Consensus size: 18
52548 AGCGATACAT
52558 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
52577 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
52590 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
52609 TGTATCGATA
1 TGTATCGATA
52619 TATTGTATCG
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
13 11 0.31
14 1 0.03
16 2 0.06
18 1 0.03
19 21 0.58
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.34
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:52591 original size:32 final size:32
Alignment explanation
Indices: 52550--52635 Score: 154
Period size: 32 Copynumber: 2.7 Consensus size: 32
52540 AGCTTCGTAG
52550 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
*
52582 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
*
52614 CGATATATTGTATCGATACAAA
1 CGATACATTGTATCGATACAAA
52636 TCGTTGAAAT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 51 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:56577 original size:28 final size:28
Alignment explanation
Indices: 56499--57332 Score: 700
Period size: 28 Copynumber: 28.3 Consensus size: 28
56489 CACAGACTCG
* * * *
56499 TGTGGGCTTTGAAAAGAGTTACCATTGGCT
1 TGTGGGCTTTG-AAAG-GGTGCCACTGACT
* * *
56529 TGTGGGTTTTCAAAAGAGTGCCACTGACT
1 TGTGGGCTTT-GAAAGGGTGCCACTGACT
*
56558 TATGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
56586 TGTGGGCTTTGAAAGGGTGCCATTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
56614 TATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
**
56642 TGTGGGCTTTGAAAATAGTGCCACTGACT
1 TGTGGGCTTTG-AAAGGGTGCCACTGACT
56671 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
56699 TGTGGGCTTTAAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
56727 TGTGGGCTTT-AATAGGATGCCACTGACT
1 TGTGGGCTTTGAA-AGGGTGCCACTGACT
* *
56755 TGTGGGCTTTGAAAATAGTTGCCACTGACT
1 TGTGGGCTTTG-AAA-GGGTGCCACTGACT
* * *
56785 CGTGGGCTTTGAAAGGATGCCACTGCCT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
56813 TGTGGGCTTTGAAAGGGTGTCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
56841 TGTGGGCTTTGAAA-GGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
56868 TATGGGCTTTGAAAAGATGCCACCGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
56896 TGTGGACTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
56924 TGTGGGCTTTGAAAGGGTGCCACTGAATT
1 TGTGGGCTTTGAAAGGGTGCCACTG-ACT
**
56953 GTGTGGGCTTTGAAATGGGTTGCCACCAACTT
1 -TGTGGGCTTTGAAA-GGG-TGCCACTGAC-T
* **
56985 GTGTGGGCTTTGAAATAGGTTGCCACCAACTT
1 -TGTGGGCTTTG-AA-AGGGTGCCACTGAC-T
* *
57017 GTGTGGGCTTTGAAATGAGTTGCCACCGACTT
1 -TGTGGGCTTTGAAA-G-GGTGCCACTGAC-T
* * *
57049 ATGTGGGTTTTGAAATGATGCCACTGACTT
1 -TGTGGGCTTTGAAAGGGTGCCACTGAC-T
* **
57079 GTGTGGGCTTTCAAATGGGTTGCCACCAACTT
1 -TGTGGGCTTTGAAA-GGG-TGCCACTGAC-T
**
57111 GTGTGGGCTTTGAAATGGGTTGCCACCAACTT
1 -TGTGGGCTTTGAAA-GGG-TGCCACTGAC-T
* *
57143 GTGTGGGCTTTGAAATGAGTTGCCACCGACTT
1 -TGTGGGCTTTGAAA-G-GGTGCCACTGAC-T
* * * *
57175 GTGTGGGTTTTGAAATGATGCCACCGACTT
1 -TGTGGGCTTTGAAAGGGTGCCACTGAC-T
* * * *
57205 GTGTGGGTTTTGAAATGATGCCACCGACTT
1 -TGTGGGCTTTGAAAGGGTGCCACTGAC-T
* * * *
57235 GTGTGGGCTTTCAAATGAGTTGCCACCGCCTT
1 -TGTGGGCTTTGAAA-G-GGTGCCACTGAC-T
* *
57267 GTGTGGGCTTTGAAATGATGCCACTGACT
1 -TGTGGGCTTTGAAAGGGTGCCACTGACT
*
57296 TGTAGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
57324 TGTGGGCTT
1 TGTGGGCTT
57333 GAAGAGATGA
Statistics
Matches: 697, Mismatches: 86, Indels: 44
0.84 0.10 0.05
Matches are distributed among these distances:
27 27 0.04
28 290 0.42
29 47 0.07
30 141 0.20
31 8 0.01
32 178 0.26
33 5 0.01
34 1 0.00
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGGTGCCACTGACT
Found at i:57087 original size:126 final size:116
Alignment explanation
Indices: 56547--57327 Score: 798
Period size: 126 Copynumber: 6.6 Consensus size: 116
56537 TTCAAAAGAG
* * * * *
56547 TGCCACTGACTTATGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCATTAA
1 TGCCACCGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGA
* *
56612 C-T-TATGGGCTTTGAAA-GGATGCCACTAACTTGTGGGCTTTGAAAATAG-
66 CTTGTGTGGGCTTTGAAATGGATGCCACCAACTTGTGGGCTTTG-AAATAGT
* * * *
56660 TGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTAAAAAGGTGCCACTGA
1 TGCCACCGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGA
**
56725 C-T-TGTGGGCTTT--AATAGGATGCCACTGACTTGTGGGCTTTGAAAATAGT
66 CTTGTGTGGGCTTTGAAAT-GGATGCCACCAACTTGTGGGCTTTG-AAATAGT
* * * *
56774 TGCCACTGACTCGTGGGCTTTGAAAGGATGCCACTGCCTTGTGGGCTTTGAAAGGGTGTCACTGA
1 TGCCACCGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGA
** * *
56839 C-T-TGTGGGCTTTGAAA-GG-TGCCACTGACTTATGGGCTTTGAAA-AGA
66 CTTGTGTGGGCTTTGAAATGGATGCCACCAACTTGTGGGCTTTGAAATAGT
*
56885 TGCCACCGACTTGTGGACTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGA
1 TGCCACCGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGA
* *
56950 ATTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGCTTTGAAATAGGT
66 CTTGTGTGGGCTTTGAAAT-GGATGCCACCAAC-T-TGTGGGCTTTGAAATA-GT
* * * * * *
57005 TGCCACCAACTTGTGTGGGCTTTGAAATGAGTTGCCACCGACTTATGTGGGTTTTGAAATGATGC
1 TGCCACCGAC-T-TGTGGGCTTTGAAA-G-GATGCCACTGAC-T-TGTGGGCTTTGAAAGGGTGC
* * *
57070 CACTGACTTGTGTGGGCTTTCAAATGGGTTGCCACCAACTTGTGTGGGCTTTGAAATGGGT
60 CACTGACTTGTGTGGGCTTTGAAAT-GGATGCCACCAAC-T-TGTGGGCTTTGAAAT-AGT
* * * * * *
57131 TGCCACCAACTTGTGTGGGCTTTGAAATGAGTTGCCACCGACTTGTGTGGGTTTTGAAATGATGC
1 TGCCACCGAC-T-TGTGGGCTTTGAAA-G-GATGCCACTGAC-T-TGTGGGCTTTGAAAGGGTGC
* * * *
57196 CACCGACTTGTGTGGGTTTTGAAAT-GATGCCACCGACTTGTGTGGGCTTTCAAATGAGT
60 CACTGACTTGTGTGGGCTTTGAAATGGATGCCACCAAC-T-TGTGGGCTTTGAAAT-AGT
* * *
57255 TGCCACCGCCTTGTGTGGGCTTTGAAATGATGCCACTGACTTGTAGGCTTTGAAAGGGTGCCACT
1 TGCCACCGAC-T-TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACT
57320 GACTTGTG
64 GACTTGTG
57328 GGCTTGAAGA
Statistics
Matches: 594, Mismatches: 53, Indels: 35
0.87 0.08 0.05
Matches are distributed among these distances:
111 64 0.11
112 4 0.01
113 137 0.23
114 73 0.12
115 2 0.00
116 10 0.02
117 1 0.00
118 13 0.02
119 1 0.00
120 37 0.06
121 2 0.00
122 23 0.04
123 1 0.00
124 65 0.11
125 1 0.00
126 160 0.27
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (116 bp):
TGCCACCGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGA
CTTGTGTGGGCTTTGAAATGGATGCCACCAACTTGTGGGCTTTGAAATAGT
Found at i:58546 original size:11 final size:9
Alignment explanation
Indices: 58532--58588 Score: 62
Period size: 10 Copynumber: 6.0 Consensus size: 9
58522 TTTTTTGCTA
58532 TTTTTTCTTG
1 TTTTTT-TTG
*
58542 GTTTTTTTG
1 TTTTTTTTG
58551 TTTTTTGTT-
1 TTTTTT-TTG
58560 TTTTTTTTG
1 TTTTTTTTG
58569 TTTTTTTTTGG
1 -TTTTTTTT-G
58580 TTTTTTTTG
1 TTTTTTTTG
58589 GGTATAAAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
8 2 0.05
9 15 0.37
10 23 0.56
11 1 0.02
ACGTcount: A:0.00, C:0.02, G:0.14, T:0.84
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:58556 original size:7 final size:7
Alignment explanation
Indices: 58544--58585 Score: 50
Period size: 7 Copynumber: 5.9 Consensus size: 7
58534 TTTTCTTGGT
58544 TTTTTTG
1 TTTTTTG
58551 TTTTTTG
1 TTTTTTG
58558 TTTTTT-
1 TTTTTTG
*
58564 TTTTGTTT
1 TTTT-TTG
58572 TTTTTTGG
1 TTTTTT-G
58580 TTTTTT
1 TTTTTT
58586 TTGGGTATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
6 4 0.13
7 17 0.55
8 10 0.32
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (7 bp):
TTTTTTG
Found at i:65994 original size:13 final size:13
Alignment explanation
Indices: 65976--66001 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
65966 ACACCAAAGT
65976 ATGTATCGATACA
1 ATGTATCGATACA
65989 ATGTATCGATACA
1 ATGTATCGATACA
66002 TAAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:70088 original size:15 final size:15
Alignment explanation
Indices: 70068--70098 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
70058 TAAAAATGTC
*
70068 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
70083 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
70098 C
1 C
70099 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:72189 original size:13 final size:13
Alignment explanation
Indices: 72171--72208 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
72161 CATTTTTCTT
72171 TGTATCGATACAA
1 TGTATCGATACAA
*
72184 TGTATCGATACAC
1 TGTATCGATACAA
72197 TGTATCGATACA
1 TGTATCGATACA
72209 GGGGGATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:74026 original size:83 final size:83
Alignment explanation
Indices: 73887--74051 Score: 312
Period size: 83 Copynumber: 2.0 Consensus size: 83
73877 AAAGGGGGAG
*
73887 AGAATAGATGTATGTATGTGCAAATAAATTTTTAATATGTGTGTAAATTACCTTATAAAGGGGGA
1 AGAATAGATGTATGTATGTGCAAATAAATTTTTAATATGTGTGTAAATTACCTTATAAAAGGGGA
73952 GATTTTTTTTAGTAAAAT
66 GATTTTTTTTAGTAAAAT
*
73970 AGAATAGATGTATGTATGTGCAAATAAATTTTTGATATGTGTGTAAATTACCTTATAAAAGGGGA
1 AGAATAGATGTATGTATGTGCAAATAAATTTTTAATATGTGTGTAAATTACCTTATAAAAGGGGA
74035 GATTTTTTTTAGTAAAA
66 GATTTTTTTTAGTAAAA
74052 GGGGAGAATG
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
83 80 1.00
ACGTcount: A:0.38, C:0.04, G:0.19, T:0.39
Consensus pattern (83 bp):
AGAATAGATGTATGTATGTGCAAATAAATTTTTAATATGTGTGTAAATTACCTTATAAAAGGGGA
GATTTTTTTTAGTAAAAT
Found at i:74805 original size:21 final size:21
Alignment explanation
Indices: 74758--74811 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 21
74748 GTAGCCAAAC
* **
74758 TTGTATCGATACACCAAAGTA
1 TTGTATCGATACACAAAAAAA
74779 -TGTATCGATACACAAAAAAA
1 TTGTATCGATACACAAAAAAA
74799 TTGTATCGATACA
1 TTGTATCGATACA
74812 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 17 0.59
21 12 0.41
ACGTcount: A:0.43, C:0.17, G:0.13, T:0.28
Consensus pattern (21 bp):
TTGTATCGATACACAAAAAAA
Found at i:74874 original size:20 final size:20
Alignment explanation
Indices: 74846--74883 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
74836 CTATATTTTC
74846 AAATATGTATCGATACATCA
1 AAATATGTATCGATACATCA
*
74866 AAATTTGTATCGATACAT
1 AAATATGTATCGATACAT
74884 TCACATGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (20 bp):
AAATATGTATCGATACATCA
Found at i:82393 original size:21 final size:20
Alignment explanation
Indices: 82348--82403 Score: 78
Period size: 21 Copynumber: 2.8 Consensus size: 20
82338 AAAAAGATAG
82348 AATGTATCGATACA-TTGGA
1 AATGTATCGATACATTTGGA
*
82367 AGATGTATCGATACATTTGGGT
1 A-ATGTATCGATACATTT-GGA
82389 AATGTATCGATACAT
1 AATGTATCGATACAT
82404 CTAGGTAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
19 1 0.03
20 13 0.39
21 16 0.48
22 3 0.09
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (20 bp):
AATGTATCGATACATTTGGA
Found at i:83828 original size:16 final size:16
Alignment explanation
Indices: 83807--83840 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
83797 GTTTAATCAA
*
83807 TATTTATTAGTATAAT
1 TATTTATTAATATAAT
83823 TATTTATTAATATAAT
1 TATTTATTAATATAAT
83839 TA
1 TA
83841 ATTAAAATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (16 bp):
TATTTATTAATATAAT
Found at i:85461 original size:13 final size:12
Alignment explanation
Indices: 85443--85491 Score: 55
Period size: 13 Copynumber: 4.0 Consensus size: 12
85433 TTTCACTCGA
85443 TTTTCTCCTTTTT
1 TTTTCT-CTTTTT
85456 TTTTCT-TTTTT
1 TTTTCTCTTTTT
*
85467 TTTTGTCTTTTCT
1 TTTTCTCTTTT-T
*
85480 TTCTCTCTTTTT
1 TTTTCTCTTTTT
85492 CAGATGAACC
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
11 10 0.32
12 5 0.16
13 16 0.52
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (12 bp):
TTTTCTCTTTTT
Found at i:86332 original size:142 final size:141
Alignment explanation
Indices: 86078--86366 Score: 377
Period size: 142 Copynumber: 2.0 Consensus size: 141
86068 TGATAATTTT
* * * * * *
86078 AAAAATTGAAAACCTTGAAAAATTCCTTTGAAAAAAATTACAAAGTAAAAAACACTATATTTTGG
1 AAAAATTGAAAAACTCGAAAAATCCCCTCGAAAAAAATTACAAAGTAAAAAACACCATATTTTGG
86143 AAAAAGAGAATTTCAAGGAAAAAAATTTCAAAACTCATGAAAATGAATAAATTTTT-AAAAATAG
66 AAAAAGAGAATTTCAAGGAAAAAAATTTCAAAACTCATGAAAATGAATAAATTTTTGAAAAATA-
*
86207 AATTAATATTAA
130 AATTAATATGAA
** * *
86219 AAAAATTGAAAAACTCGAAAAATCCCCTCG-AAAAAATTACGGAGTAAAAAATACCGTATTTTGG
1 AAAAATTGAAAAACTCGAAAAATCCCCTCGAAAAAAATTACAAAGTAAAAAACACCATATTTTGG
* * * *
86283 AAAAAAAGGGAATTTCAAGGAAAAAAA-TTCAAAAACTCATGAAAGTGAATGAATTTTTGAAAAC
66 --AAAAAGAGAATTTCAAGGAAAAAAATTTC-AAAACTCATGAAAATGAATAAATTTTTGAAAAA
86347 TAAATTAATATGAA
128 TAAATTAATATGAA
*
86361 ATAAAT
1 AAAAAT
86367 GATAACATTT
Statistics
Matches: 128, Mismatches: 16, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
140 29 0.23
141 28 0.22
142 65 0.51
143 6 0.05
ACGTcount: A:0.54, C:0.09, G:0.11, T:0.26
Consensus pattern (141 bp):
AAAAATTGAAAAACTCGAAAAATCCCCTCGAAAAAAATTACAAAGTAAAAAACACCATATTTTGG
AAAAAGAGAATTTCAAGGAAAAAAATTTCAAAACTCATGAAAATGAATAAATTTTTGAAAAATAA
ATTAATATGAA
Found at i:86523 original size:166 final size:167
Alignment explanation
Indices: 86219--86577 Score: 501
Period size: 166 Copynumber: 2.1 Consensus size: 167
86209 TTAATATTAA
** *
86219 AAAAATTGAAAAACTCGAAAAATCCCCTCGAAAAAATTACGGAGTAAAAAATACCGTATTTTGGA
1 AAAAATTGAAAAACAAGAAAAATCCCCTCGAAAAAATTACAGAGTAAAAAATACCGTATTTTGGA
* * *
86284 AAAAAAGGGAATTTCAAGGAAAAAAATTCAAAAACTCATGAAAGTGAATGAATTTTTGAAAACTA
66 AAAAAA-GAAATTTCAAGGAAAAAAATTAAAAAACTCATGAAAATGAATGAATTTTTGAAAACTA
*
86349 AATTAATATGAAATAAATGATAACATTTGATGAATTTT
130 AATTAATATGAAATAAATAATAACATTTGATGAATTTT
* * *
86387 AAAAATTGAAAACCAAGAAAAATCCCCTCGAAAAAAAATTACAGAGTAGAAAATATCGTATTTT-
1 AAAAATTGAAAAACAAGAAAAATCCCCTCG--AAAAAATTACAGAGTAAAAAATACCGTATTTTG
* *
86451 GAAAAAAA-AAATTTCAAGGAAAAAAA-TAAAAAACTCATGAAAATGAATTAATTTTTGAAAATT
64 GAAAAAAAGAAATTTCAAGGAAAAAAATTAAAAAACTCATGAAAATGAATGAATTTTTGAAAACT
* * *
86514 GATTTAATATGAAATAAATAATAATATTTGATGAATTTT
129 AAATTAATATGAAATAAATAATAACATTTGATGAATTTT
* *
86553 GAAAATT-AAAAATTAAGAAAAATCC
1 AAAAATTGAAAAA-CAAGAAAAATCC
86578 TCCCAAAAAA
Statistics
Matches: 170, Mismatches: 18, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
165 4 0.02
166 85 0.50
167 17 0.10
168 27 0.16
169 8 0.05
170 29 0.17
ACGTcount: A:0.53, C:0.08, G:0.12, T:0.27
Consensus pattern (167 bp):
AAAAATTGAAAAACAAGAAAAATCCCCTCGAAAAAATTACAGAGTAAAAAATACCGTATTTTGGA
AAAAAAGAAATTTCAAGGAAAAAAATTAAAAAACTCATGAAAATGAATGAATTTTTGAAAACTAA
ATTAATATGAAATAAATAATAACATTTGATGAATTTT
Found at i:88367 original size:43 final size:43
Alignment explanation
Indices: 88305--88461 Score: 242
Period size: 43 Copynumber: 3.7 Consensus size: 43
88295 GACGGGCAAT
* * *
88305 TAAAAAGATGAAGAAGTCTCTTGGGTCTAAGCCGACAGGTAGA
1 TAAAGAGATGAAGAAGTCTCTCGGGTCTAAGCCAACAGGTAGA
* *
88348 TAAAGAGATGAAGAAGTCTCCCGGGTCTAAGCCAACAAGTAGA
1 TAAAGAGATGAAGAAGTCTCTCGGGTCTAAGCCAACAGGTAGA
* * *
88391 TAAAGAGATGAAGAAGTCTCTCGAGTCTAAGCCAATAGATAGA
1 TAAAGAGATGAAGAAGTCTCTCGGGTCTAAGCCAACAGGTAGA
88434 TAAAGAGATGAAGAAGTCTCTCGGGTCT
1 TAAAGAGATGAAGAAGTCTCTCGGGTCT
88462 GAGCTGACGG
Statistics
Matches: 103, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 103 1.00
ACGTcount: A:0.38, C:0.15, G:0.26, T:0.20
Consensus pattern (43 bp):
TAAAGAGATGAAGAAGTCTCTCGGGTCTAAGCCAACAGGTAGA
Found at i:88511 original size:44 final size:44
Alignment explanation
Indices: 88447--88613 Score: 133
Period size: 43 Copynumber: 3.9 Consensus size: 44
88437 AGAGATGAAG
* * * * *
88447 AAGTCTCTCGGGTCTGAGCTGACGGGCAGACGGTTGATAAAAAA
1 AAGTCTCCCGAGTCTAAGCTGACGAGCAGACGATTGATAAAAAA
* **
88491 AAGTCTCCCGAGTCTAAGCTGACGAGCAGACGATTTAT-AAAGG
1 AAGTCTCCCGAGTCTAAGCTGACGAGCAGACGATTGATAAAAAA
* * * * * *
88534 AAGTCTCTCGGGTCTAAGCCGACAAGAAGACGAATGAT--AAAA
1 AAGTCTCCCGAGTCTAAGCTGACGAGCAGACGATTGATAAAAAA
* * * * * *
88576 GAGTCTCCTGGGTCTAAGCCGATGAGCAGATGATTGAT
1 AAGTCTCCCGAGTCTAAGCTGACGAGCAGACGATTGAT
88614 GAAGGGAGTC
Statistics
Matches: 98, Mismatches: 25, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
42 32 0.33
43 34 0.35
44 32 0.33
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.21
Consensus pattern (44 bp):
AAGTCTCCCGAGTCTAAGCTGACGAGCAGACGATTGATAAAAAA
Found at i:88552 original size:43 final size:43
Alignment explanation
Indices: 88444--89698 Score: 280
Period size: 42 Copynumber: 29.5 Consensus size: 43
88434 TAAAGAGATG
* * * *
88444 AAGAAGTCTCTCGGGTCTGAGCTGACGGGCAGACGGTTGATAAA
1 AAGAAGTCTCTCGGGTCTAAGCCGACGAGCAGACGATTGAT-AA
* * * * *
88488 AAAAAGTCTCCCGAGTCTAAGCTGACGAGCAGACGATTTATAA
1 AAGAAGTCTCTCGGGTCTAAGCCGACGAGCAGACGATTGATAA
* * * *
88531 AGGAAGTCTCTCGGGTCTAAGCCGACAAGAAGACGAATGATAA
1 AAGAAGTCTCTCGGGTCTAAGCCGACGAGCAGACGATTGATAA
* * *
88574 AAG-AGTCTC-CTGGGTCTAAGCCGATGAGCAGATGATTGATGA
1 AAGAAGTCTCTC-GGGTCTAAGCCGACGAGCAGACGATTGATAA
* * ** * * *** *
88616 AGGGAGTCTCTCTAGTCTAAGCCGACGGGCAGATGGCGGAT-G
1 AAGAAGTCTCTCGGGTCTAAGCCGACGAGCAGACGATTGATAA
* * * * * * * ** *
88658 AAGAAGTTTCCCGAGTCAAAGCCAACGAGTAGGCGAAAGAT-G
1 AAGAAGTCTCTCGGGTCTAAGCCGACGAGCAGACGATTGATAA
* * * * *
88700 AAGAAGTTTCCCGGGTCTAAGCCGACGGGCAAACGAATGATAA
1 AAGAAGTCTCTCGGGTCTAAGCCGACGAGCAGACGATTGATAA
* * ** * * * * * * *
88743 AGGAAGTCTCCCAAGACTGAGCCAACGGGTAGACGGTGGAT-A
1 AAGAAGTCTCTCGGGTCTAAGCCGACGAGCAGACGATTGATAA
* ** * * ** **
88785 AAGAAGTCTCCCAAGTCTAAGCCGACGGGCAGACAAAAGATGG
1 AAGAAGTCTCTCGGGTCTAAGCCGACGAGCAGACGATTGATAA
* * * * * *
88828 AA-AAGTCTCCCAGGTCTAAGCCGACG-GATAAATGATTGACAA
1 AAGAAGTCTCTCGGGTCTAAGCCGACGAG-CAGACGATTGATAA
* * * * * * * *
88870 AGGAAATCTC-CTGGGTCTAAACTGACGGGCTGATGATTGA-CA
1 AAGAAGTCTCTC-GGGTCTAAGCCGACGAGCAGACGATTGATAA
* * * * * * **
88912 AAGAAAATCTCTCGGGTCTAAACCAACGGGCAAATGATTGATGG
1 AAG-AAGTCTCTCGGGTCTAAGCCGACGAGCAGACGATTGATAA
* * *
88956 AA-AAGTCTCCTC-GGTCTAAGCCGACGGGAAAACGATTGATAA
1 AAGAAGTCT-CTCGGGTCTAAGCCGACGAGCAGACGATTGATAA
* * * *
88998 AAGAAGTCTCTCGAGTCTAAGCCGACG-GACAAACGAATGATGA
1 AAGAAGTCTCTCGGGTCTAAGCCGACGAG-CAGACGATTGATAA
* * * *
89041 AA-AAGTCTCTCGGGTCTAAACCGATG-GACAGATGATTCATAA
1 AAGAAGTCTCTCGGGTCTAAGCCGACGAG-CAGACGATTGATAA
* * ** * * * * * **
89083 AGGAAGTTTC-CTAAGTTTAAGCCAATGGGCAGATGAAAGATGAA
1 AAGAAGTCTCTC-GGGTCTAAGCCGACGAGCAGACGATTGAT-AA
* * * * *
89127 AA-AAGTCTCCCGGGTCTAAACTGACG-G-ACGAACGAATGATGA
1 AAGAAGTCTCTCGGGTCTAAGCCGACGAGCA-G-ACGATTGATAA
* * ** * **
89169 AA-AAGTGTCCCGGGTCTAAGCTAAC-AGGCAGACGAATGATGG
1 AAGAAGTCTCTCGGGTCTAAGCCGACGA-GCAGACGATTGATAA
* * * * *
89211 AA-AAGTCTCTCGGGCCTAAGTCGATGGGTAGAC-ATTTGATGAA
1 AAGAAGTCTCTCGGGTCTAAGCCGACGAGCAGACGA-TTGAT-AA
* * * * * * * **
89254 AA-AAGTCTCCCAGGTCTAAGCCGATGGGTAGATGAATGATGG
1 AAGAAGTCTCTCGGGTCTAAGCCGACGAGCAGACGATTGATAA
* * * * *
89296 AA-AAGTCTCCCGGGTCTAAGCCGACGAGCAAACAATTAACAA
1 AAGAAGTCTCTCGGGTCTAAGCCGACGAGCAGACGATTGATAA
* * * * * ** * * **
89338 AGGAAGTCACCCAGGTCTAAGTC-AATAGGCAAAAGATTGATGG
1 AAGAAGTCTCTCGGGTCTAAGCCGACGA-GCAGACGATTGATAA
* * * * * *
89381 AA-AAGTCTC-CTAGGTCTAAACTGATGGGCAGACGATTGA-CA
1 AAGAAGTCTCTC-GGGTCTAAGCCGACGAGCAGACGATTGATAA
* * * * * *
89422 AAGAAAGTCTC-CTAGGTCTAAGCCTA-TAGGTAGATGATTAATAA
1 AAG-AAGTCTCTC-GGGTCTAAGCCGACGA-GCAGACGATTGATAA
* * * * * * **
89466 AGGAAGTCTTTCGAGTCTAAGCTGACGAGCAAATGATTGATGG
1 AAGAAGTCTCTCGGGTCTAAGCCGACGAGCAGACGATTGATAA
* * * * * * * *
89509 GA-AAGTCTCCCGAGTTTGAGCTGA-TAGGTAGACGATTGATAA
1 AAGAAGTCTCTCGGGTCTAAGCCGACGA-GCAGACGATTGATAA
* * * * * **
89551 AGGAAGCCTCTTGGGTCTAAGCTGATTG-GCAGACGAAAGATGAA
1 AAGAAGTCTCTCGGGTCTAAGCCGA-CGAGCAGACGATTGAT-AA
* * * * **
89595 AA-AAGTCTCCCGGGTCTAAGCCGACGGGTAGACGAATGATGG
1 AAGAAGTCTCTCGGGTCTAAGCCGACGAGCAGACGATTGATAA
* * * * *
89637 AAG-AGTCTCCCGGGTCTAAGTCGAC-AGGCAGATGATGGA-AG
1 AAGAAGTCTCTCGGGTCTAAGCCGACGA-GCAGACGATTGATAA
* *
89678 AAGAAGTCTTTCAGGTCTAAG
1 AAGAAGTCTCTCGGGTCTAAG
89699 TCAATAGAGA
Statistics
Matches: 893, Mismatches: 269, Indels: 100
0.71 0.21 0.08
Matches are distributed among these distances:
41 12 0.01
42 422 0.47
43 405 0.45
44 54 0.06
ACGTcount: A:0.34, C:0.19, G:0.28, T:0.20
Consensus pattern (43 bp):
AAGAAGTCTCTCGGGTCTAAGCCGACGAGCAGACGATTGATAA
Found at i:88565 original size:87 final size:85
Alignment explanation
Indices: 88446--89064 Score: 236
Period size: 85 Copynumber: 7.3 Consensus size: 85
88436 AAGAGATGAA
* * ** * ** *
88446 GAAGTCTCTCGGGTCTGAGCTGACGGGCAGACGGTTGATAAAAAAAAGTCTCCCGAGTCTAAGCT
1 GAAGTCTCTCGGGTCTAAGCCGACAAGAAGACGAATGAT--AAAAAAGTCTCCCGAGTCTAAGCC
*
88511 GACGAGCAGACGATTTATAAAG
64 GACGAGCAGACGATTGATAAAG
* * *
88533 GAAGTCTCTCGGGTCTAAGCCGACAAGAAGACGAATGATAAAAGAGTCTCCTGGGTCTAAGCCGA
1 GAAGTCTCTCGGGTCTAAGCCGACAAGAAGACGAATGATAAAAAAGTCTCCCGAGTCTAAGCCGA
* * *
88598 TGAGCAGATGATTGATGAAG
66 CGAGCAGACGATTGATAAAG
* ** ** * * *** * * * * *
88618 GGAGTCTCTCTAGTCTAAGCCGACGGGCAGATGGCGGATGAAGAAGTTTCCCGAGTCAAAGCCAA
1 GAAGTCTCTCGGGTCTAAGCCGACAAGAAGACGAATGATAAAAAAGTCTCCCGAGTCTAAGCCGA
* * ** *
88683 CGAGTAGGCGAAAGATGAA-
66 CGAGCAGACGATTGATAAAG
* * ** * * * *
88702 GAAGTTTCCCGGGTCTAAGCCGACGGGCAA-ACGAATGATAAAGGAAGTCTCCCAAGACTGAGCC
1 GAAGTCTCTCGGGTCTAAGCCGACAAG-AAGACGAATGATAAA-AAAGTCTCCCGAGTCTAAGCC
* * * * *
88766 AACGGGTAGACGGTGGATAAA-
64 GACGAGCAGACGATTGATAAAG
* ** ** * * * **
88787 GAAGTCTCCCAAGTCTAAGCCGACGGGCAGACAAAAGATGGAAAAGTCTCCC-AGGTCTAAGCCG
1 GAAGTCTCTCGGGTCTAAGCCGACAAGAAGACGAATGATAAAAAAGTCTCCCGA-GTCTAAGCCG
* * * *
88851 ACG-GATAAATGATTGACAAAG
65 ACGAG-CAGACGATTGATAAAG
* * * ** ** * * * * * * *
88872 GAAATCTC-CTGGGTCTAAACTGACGGGCTGATGATTGACAAAGAAAATCTCTCGGGTCTAAACC
1 GAAGTCTCTC-GGGTCTAAGCCGACAAGAAGACGAATGATAAA-AAAGTCTCCCGAGTCTAAGCC
* * * * *
88936 AACGGGCAAATGATTGATGGAA-
64 GACGAGCAGACGATTGAT-AAAG
** * * *
88958 -AAGTCTCCTC-GGTCTAAGCCGACGGGAAAACGATTGATAAAAGAAGTCTCTCGAGTCTAAGCC
1 GAAGTCT-CTCGGGTCTAAGCCGACAAGAAGACGAATGATAAAA-AAGTCTCCCGAGTCTAAGCC
* *
89021 GACG-GACAAACGAATGATGAAA-
64 GACGAG-CAGACGATTGAT-AAAG
*
89043 -AAGTCTCTCGGGTCTAAACCGA
1 GAAGTCTCTCGGGTCTAAGCCGA
89065 TGGACAGATG
Statistics
Matches: 401, Mismatches: 115, Indels: 34
0.73 0.21 0.06
Matches are distributed among these distances:
83 2 0.00
84 65 0.16
85 268 0.67
86 30 0.07
87 36 0.09
ACGTcount: A:0.33, C:0.20, G:0.28, T:0.18
Consensus pattern (85 bp):
GAAGTCTCTCGGGTCTAAGCCGACAAGAAGACGAATGATAAAAAAGTCTCCCGAGTCTAAGCCGA
CGAGCAGACGATTGATAAAG
Found at i:88723 original size:127 final size:127
Alignment explanation
Indices: 88577--88853 Score: 295
Period size: 127 Copynumber: 2.2 Consensus size: 127
88567 ATGATAAAAG
* * * * * * * * * * *
88577 AGTCTCCTGGGTCTAAGCCGATGAGCAGATGATTGATGAAGGGAGTCTCTCTAGTCTAAGCCGAC
1 AGTCTCCCGGGTCTAAGCCGACGAGCAAACGAATGATAAAGGAAGTCTCCCAAGACTAAGCCAAC
* * * * * * *
88642 GGGCAGATGGCGGATGAAGAAGTTTCCCGAGTCAAAGCCAACGAGTAGGCGAAAGAT-GAAGA
66 GGGCAGACGGCGGATAAAGAAGTCTCCCAAGTCAAAGCCAACGAGCAGACAAAAGATGGAA-A
* * *
88704 AGTTTCCCGGGTCTAAGCCGACGGGCAAACGAATGATAAAGGAAGTCTCCCAAGACTGAGCCAAC
1 AGTCTCCCGGGTCTAAGCCGACGAGCAAACGAATGATAAAGGAAGTCTCCCAAGACTAAGCCAAC
* * * * *
88769 GGGTAGACGGTGGATAAAGAAGTCTCCCAAGTCTAAGCCGACGGGCAGACAAAAGATGGAAA
66 GGGCAGACGGCGGATAAAGAAGTCTCCCAAGTCAAAGCCAACGAGCAGACAAAAGATGGAAA
*
88831 AGTCTCCCAGGTCTAAGCCGACG
1 AGTCTCCCGGGTCTAAGCCGACG
88854 GATAAATGAT
Statistics
Matches: 121, Mismatches: 28, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
127 118 0.98
128 3 0.02
ACGTcount: A:0.31, C:0.22, G:0.30, T:0.17
Consensus pattern (127 bp):
AGTCTCCCGGGTCTAAGCCGACGAGCAAACGAATGATAAAGGAAGTCTCCCAAGACTAAGCCAAC
GGGCAGACGGCGGATAAAGAAGTCTCCCAAGTCAAAGCCAACGAGCAGACAAAAGATGGAAA
Found at i:89345 original size:85 final size:85
Alignment explanation
Indices: 88876--89458 Score: 296
Period size: 85 Copynumber: 6.9 Consensus size: 85
88866 ACAAAGGAAA
* * ** ** * * * * * * **
88876 TCTCCTGGGTCTAAACTGACGGGCTGATGATTGACAAAGAAAATCTCTCGGGTCTAAACCAACGG
1 TCTCCCGGGTCTAAACCGACGGGCAAACAATTAACAAAGGAAGTCTCCCAGGTCTAAGCCAATAG
* *
88941 GCAAATGATTGATGGAAAAG
66 GCAGATGAATGATGGAAAAG
* * * * * * * *
88961 TCTCCTC-GGTCTAAGCCGACGGGAAAACGATTGATAAAAGAAGTCTCTC-GAGTCTAAGCCGA-
1 TCTCC-CGGGTCTAAACCGACGGGCAAACAATTAACAAAGGAAGTCTCCCAG-GTCTAAGCCAAT
* * * *
89023 CGGACAAACGAATGATGAAAAAG
64 AGG-CAGATGAATGATGGAAAAG
* * * * ** * * * * * * *
89046 TCTCTCGGGTCTAAACCGATGGACAGATGATTCATAAAGGAAGTTTCCTAAGTTTAAGCCAATGG
1 TCTCCCGGGTCTAAACCGACGGGCAAACAATTAACAAAGGAAGTCTCCCAGGTCTAAGCCAATAG
* *
89111 GCAGATGAAAGATGAAAAAAG
66 GCAGATGAATGATG-GAAAAG
* * * * ** * * * *
89132 TCTCCCGGGTCTAAACTGACGGACGAACGAATGATGAAA--AAGTGTCCCGGGTCTAAGCTAACA
1 TCTCCCGGGTCTAAACCGACGGGCAAAC-AATTAACAAAGGAAGTCTCCCAGGTCTAAGCCAATA
*
89195 GGCAGACGAATGATGGAAAAG
65 GGCAGATGAATGATGGAAAAG
* * ** * * * * ** * * *
89216 TCTCTCGGGCCTAAGTCGATGGGTAGACATTTGATGAAA-AAAGTCTCCCAGGTCTAAGCCGATG
1 TCTCCCGGGTCTAAACCGACGGGCAAACAATT-AACAAAGGAAGTCTCCCAGGTCTAAGCCAATA
*
89280 GGTAGATGAATGATGGAAAAG
65 GGCAGATGAATGATGGAAAAG
* * * *
89301 TCTCCCGGGTCTAAGCCGACGAGCAAACAATTAACAAAGGAAGTCACCCAGGTCTAAGTCAATAG
1 TCTCCCGGGTCTAAACCGACGGGCAAACAATTAACAAAGGAAGTCTCCCAGGTCTAAGCCAATAG
* * *
89366 GCAAAAGATTGATGGAAAAG
66 GCAGATGAATGATGGAAAAG
** * * * * * * * *
89386 TCTCCTAGGTCTAAACTGATGGGCAGACGATTGACAAAGAAAGTCTCCTAGGTCTAAGCCTATAG
1 TCTCCCGGGTCTAAACCGACGGGCAAACAATTAACAAAGGAAGTCTCCCAGGTCTAAGCCAATAG
*
89451 GTAGATGA
66 GCAGATGA
89459 TTAATAAAGG
Statistics
Matches: 373, Mismatches: 114, Indels: 22
0.73 0.22 0.04
Matches are distributed among these distances:
83 2 0.01
84 37 0.10
85 299 0.80
86 30 0.08
87 5 0.01
ACGTcount: A:0.35, C:0.19, G:0.26, T:0.21
Consensus pattern (85 bp):
TCTCCCGGGTCTAAACCGACGGGCAAACAATTAACAAAGGAAGTCTCCCAGGTCTAAGCCAATAG
GCAGATGAATGATGGAAAAG
Found at i:89357 original size:170 final size:165
Alignment explanation
Indices: 88882--89458 Score: 441
Period size: 170 Copynumber: 3.4 Consensus size: 165
88872 GAAATCTCCT
* * * * * * * * * *
88882 GGGTCTAAACTGACGGGCTGATGATTGACAAAGAAAATCT-CTCGGGTCTAAACCAACGGGCAAA
1 GGGTCTAAAC-GATGGGCAGA-CATTGATAAAGAAAGTCTCCT-AGGTCTAAGCCAATGGGTAGA
* * * *
88946 TGATTGATGGAAAAGTCTCCTC-GGTCTAAGCCGACGGGAAAACGATTGATA-AAAGAAGTCTCT
63 TGAATGATGGAAAAGTCTCC-CGGGTCTAAGCCGAC-GGCAAACAATT-A-ACAAAGAAGTCTCC
** *
89009 CGAGTCTAAGCCGAC-GGACAAACGAATGATGAAAAAGTCTCTC
124 CG-GTCTAAGCTAACAGG-CAAACGAATGATGGAAAAGTCTCTC
* * * * * * * *
89052 GGGTCTAAACCGATGGACAGATGATTCATAAAGGAAGTTTCCTAAGTTTAAGCCAATGGGCAGAT
1 GGGTCTAAA-CGATGGGCAGA-CATTGATAAAGAAAGTCTCCTAGGTCTAAGCCAATGGGTAGAT
* * * * * * ** *
89117 GAAAGATGAAAAAAGTCTCCCGGGTCTAAACTGACGGACGAACGAATGATGAAA-AAGTGTCCCG
64 GAATGATG-GAAAAGTCTCCCGGGTCTAAGCCGACGG-CAAAC-AATTAACAAAGAAGTCTCCC-
*
89181 GGTCTAAGCTAACAGGCAGACGAATGATGGAAAAGTCTCTC
125 GGTCTAAGCTAACAGGCAAACGAATGATGGAAAAGTCTCTC
* * * * *
89222 GGGCCTAAGTCGATGGGTAGACATTTGATGAAA-AAAGTCTCCCAGGTCTAAGCCGATGGGTAGA
1 GGGTCTAA-ACGATGGGCAGACA-TTGAT-AAAGAAAGTCTCCTAGGTCTAAGCCAATGGGTAGA
*
89286 TGAATGATGGAAAAGTCTCCCGGGTCTAAGCCGACGAGCAAACAATTAACAAAGGAAGTCACCCA
63 TGAATGATGGAAAAGTCTCCCGGGTCTAAGCCGACG-GCAAACAATTAACAAA-GAAGTCTCCC-
* * *
89351 GGTCTAAG-TCAATAGGCAAAAGATTGATGGAAAAGTCTC-C
125 GGTCTAAGCT-AACAGGCAAACGAATGATGGAAAAGTCTCTC
* * * *
89391 TAGGTCTAAACTGATGGGCAGACGATTGACAAAGAAAGTCTCCTAGGTCTAAGCCTATAGGTAGA
1 -GGGTCTAAAC-GATGGGCAGAC-ATTGATAAAGAAAGTCTCCTAGGTCTAAGCCAATGGGTAGA
89456 TGA
63 TGA
89459 TTAATAAAGG
Statistics
Matches: 321, Mismatches: 66, Indels: 40
0.75 0.15 0.09
Matches are distributed among these distances:
168 7 0.02
169 35 0.11
170 239 0.74
171 38 0.12
172 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.26, T:0.20
Consensus pattern (165 bp):
GGGTCTAAACGATGGGCAGACATTGATAAAGAAAGTCTCCTAGGTCTAAGCCAATGGGTAGATGA
ATGATGGAAAAGTCTCCCGGGTCTAAGCCGACGGCAAACAATTAACAAAGAAGTCTCCCGGTCTA
AGCTAACAGGCAAACGAATGATGGAAAAGTCTCTC
Found at i:89833 original size:43 final size:42
Alignment explanation
Indices: 89716--89854 Score: 138
Period size: 43 Copynumber: 3.3 Consensus size: 42
89706 AGAGATGATT
* * * *
89716 GATAAAGAAAGTCTCCCGAGACTGAACCGACCGGCTA-ACAATG
1 GATAAAG-AAGTCTCCCAAGACTGAGCTGA-CGGGTAGACAATG
* * * * *
89759 GATGAAGAAGTCTCCCAAGTCTAAG-TCGACGGGTAGACGATT
1 GATAAAGAAGTCTCCCAAGACTGAGCT-GACGGGTAGACAATG
*
89801 GATAAAGGAAGTCTCCCAAGACTGAGCTGACGGGAAGACAATG
1 GATAAA-GAAGTCTCCCAAGACTGAGCTGACGGGTAGACAATG
89844 GATAAAGAAGT
1 GATAAAGAAGT
89855 TTCCAGAGTC
Statistics
Matches: 77, Mismatches: 15, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
41 5 0.06
42 30 0.39
43 41 0.53
44 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.27, T:0.17
Consensus pattern (42 bp):
GATAAAGAAGTCTCCCAAGACTGAGCTGACGGGTAGACAATG
Found at i:89910 original size:84 final size:85
Alignment explanation
Indices: 89716--89986 Score: 217
Period size: 85 Copynumber: 3.2 Consensus size: 85
89706 AGAGATGATT
* * * ** * * * * * * *
89716 GATAAAGAAAGTCTCCCGAGACTGAACCGACCGGCTAACAATGGATGAAGAAGTCTCCCAAGTCT
1 GATAAAGGAAGTCTCCCAAGACTGAGCCGAGAGACAAACAATGGATAAAGAAATCTCCTAGGTCA
* * * **
89781 AAG-TCGACGGGTAGACGATT
66 AAGCT-AACGGGCAGATGAAA
* * * * *
89801 GATAAAGGAAGTCTCCCAAGACTGAGCTGACGGGA-AGACAATGGATAAAGAAGTTTCC-AGAGT
1 GATAAAGGAAGTCTCCCAAGACTGAGCCGA-GAGACAAACAATGGATAAAGAAATCTCCTAG-GT
*
89864 CAAAGCTAATGGGCAGAT-AAA
64 CAAAGCTAACGGGCAGATGAAA
* * ** * *
89885 GATAAAGAAAGTCTCTCGGGACTGAGCCGATAGACAAACAATGGATGAAGAAATCTCCTAGGTCA
1 GATAAAGGAAGTCTCCCAAGACTGAGCCGAGAGACAAACAATGGATAAAGAAATCTCCTAGGTCA
*
89950 AAGCTGACGGGCAGATGAAA
66 AAGCTAACGGGCAGATGAAA
89970 GATAAAGGAAGTCTCCC
1 GATAAAGGAAGTCTCCC
89987 GGTCAAACTC
Statistics
Matches: 146, Mismatches: 34, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
83 2 0.01
84 64 0.44
85 78 0.53
86 2 0.01
ACGTcount: A:0.38, C:0.19, G:0.27, T:0.17
Consensus pattern (85 bp):
GATAAAGGAAGTCTCCCAAGACTGAGCCGAGAGACAAACAATGGATAAAGAAATCTCCTAGGTCA
AAGCTAACGGGCAGATGAAA
Found at i:90058 original size:43 final size:43
Alignment explanation
Indices: 90001--91293 Score: 1106
Period size: 43 Copynumber: 30.3 Consensus size: 43
89991 AAACTCGATG
* * * *
90001 GGCAAACTTGAGGGGGAAGAAGTTTCCAAGGTCAAAGCTGACA
1 GGCAGACTTAAGGGGGAAGAAGTCTCTAAGGTCAAAGCTGACA
* * *
90044 AGCAGACTTAAGGGGGAAGAAGTCTCTAGGGTCAAAGCTTACA
1 GGCAGACTTAAGGGGGAAGAAGTCTCTAAGGTCAAAGCTGACA
* * * * *
90087 GGCAAACTTAATGGTGAAGAAGTCTCTAGGGTCAAAGCTGATA
1 GGCAGACTTAAGGGGGAAGAAGTCTCTAAGGTCAAAGCTGACA
* * *
90130 GGCAGACTTAAGAGGGAAGAAGTCTC-CAGGATCAAAGCTAACA
1 GGCAGACTTAAGGGGGAAGAAGTCTCTAAGG-TCAAAGCTGACA
* * * *
90173 AGCAGACTTAGGGGGGAAGAAGTCTC-AAGG-----GCCGATA
1 GGCAGACTTAAGGGGGAAGAAGTCTCTAAGGTCAAAGCTGACA
* * *
90210 GGCAGACTTAAGGGTGAAGAAGTCTCTAGGGTCAAAGCCGACA
1 GGCAGACTTAAGGGGGAAGAAGTCTCTAAGGTCAAAGCTGACA
* * * * *
90253 GGTAGACTTAAAGGTGAAGAAATCTCTAGGGTCAAAG-TCGACA
1 GGCAGACTTAAGGGGGAAGAAGTCTCTAAGGTCAAAGCT-GACA
* * *
90296 AGCAGACTTAA-GGGCAGAGAAGTCTCTAAGGTCAAAGCCGACA
1 GGCAGACTTAAGGGGGA-AGAAGTCTCTAAGGTCAAAGCTGACA
* * * * * *
90339 GACAAACTTAAGGGTGCAA-AAATCTCCAAGGTCAAAGTTGACA
1 GGCAGACTTAAGGG-GGAAGAAGTCTCTAAGGTCAAAGCTGACA
* * * * *
90382 AGCAAACTTAA-GGGGAAGAAGTCTCTAGGGTCAAAGCCGACT
1 GGCAGACTTAAGGGGGAAGAAGTCTCTAAGGTCAAAGCTGACA
* * * * * *
90424 GGCAAACTTAAAGGGGAAGAAGTCTTTAGGGTTAAAGCTGATA
1 GGCAGACTTAAGGGGGAAGAAGTCTCTAAGGTCAAAGCTGACA
* * * * *
90467 GGCAGATTTAAGGGTGAAGAAGTCTCCAAGGTCAAAACCGACA
1 GGCAGACTTAAGGGGGAAGAAGTCTCTAAGGTCAAAGCTGACA
* * * *
90510 GGCAAACTTAAGGGAGAAGAAGTCTCT-AGGATCAAAACTAACA
1 GGCAGACTTAAGGGGGAAGAAGTCTCTAAGG-TCAAAGCTGACA
* *
90553 AGCAGACTTAAGGGGGAAGAAGTCTCCAAGGTCAAAG-TCGACA
1 GGCAGACTTAAGGGGGAAGAAGTCTCTAAGGTCAAAGCT-GACA
* ** *
90596 GGTAGACTTAAAAGGGAAGAAGTCTCTAAGGTCAAAGCCGACA
1 GGCAGACTTAAGGGGGAAGAAGTCTCTAAGGTCAAAGCTGACA
* * * * *
90639 GACAGACTTAAGAGGGAAGAAGTCTCTAGGGTCAAA-ATCGATA
1 GGCAGACTTAAGGGGGAAGAAGTCTCTAAGGTCAAAGCT-GACA
* *
90682 GGCAGACTTAAGGGGGAAGAAGTCTCCAAGGTTAAAG-TAGACA
1 GGCAGACTTAAGGGGGAAGAAGTCTCTAAGGTCAAAGCT-GACA
* ** * *
90725 AGCAGACTTAAGGGTAAAGAAGTCT-TCAGGGTCAAAGCCGACA
1 GGCAGACTTAAGGGGGAAGAAGTCTCT-AAGGTCAAAGCTGACA
* * * * *
90768 AGCAGACTTAA-AGGGAAGAAGTCT-TCAGGGTCAAAGCCGATA
1 GGCAGACTTAAGGGGGAAGAAGTCTCT-AAGGTCAAAGCTGACA
* * *
90810 GACAGACTTAAAGGGGAAGAAGTCTCTAAGGTCAAAGTTGACA
1 GGCAGACTTAAGGGGGAAGAAGTCTCTAAGGTCAAAGCTGACA
* * *
90853 GACAGACTTTAA-GGTGAAGAAGTCTCCAAGGTCAAA-CTCGACA
1 GGCAGAC-TTAAGGGGGAAGAAGTCTCTAAGGTCAAAGCT-GACA
* * *
90896 GGCAGACTTAAGGGTGAAGAAGTCTCTAGGGTCAAA-ATCGACA
1 GGCAGACTTAAGGGGGAAGAAGTCTCTAAGGTCAAAGCT-GACA
** * *
90939 GGCAGACTTAAAAGTGAAGAAGTCTCTAGGGTCAAAG-TCGACA
1 GGCAGACTTAAGGGGGAAGAAGTCTCTAAGGTCAAAGCT-GACA
* * * *
90982 GGCAGACTTAAGGGTGAAGAAGTCTCTAAGATCAAAGCCGATA
1 GGCAGACTTAAGGGGGAAGAAGTCTCTAAGGTCAAAGCTGACA
* * **
91025 GGTAGACTTAAGGTGGAAGAAGTCTCTAAGGTCAAAAATGACA
1 GGCAGACTTAAGGGGGAAGAAGTCTCTAAGGTCAAAGCTGACA
* * * * *
91068 AGCAGACTTAAAGAGGAAGAAGTCT-TCAGGGTC-AAGACCGACA
1 GGCAGACTTAAGGGGGAAGAAGTCTCT-AAGGTCAAAG-CTGACA
* * * *
91111 GGCAGACTTAAAGAGGAAGAAGTCTCTAGGGTCAAAGCCGACA
1 GGCAGACTTAAGGGGGAAGAAGTCTCTAAGGTCAAAGCTGACA
* * * * * * * * *
91154 GGCAGACTTCAGGGTGAGGAAGTATTTAGGGTCAAAACCGATA
1 GGCAGACTTAAGGGGGAAGAAGTCTCTAAGGTCAAAGCTGACA
* * *
91197 GGTAGACTTAAGGGTGAAGAAGTCTCTAGGGTCAAAG-TCGACA
1 GGCAGACTTAAGGGGGAAGAAGTCTCTAAGGTCAAAGCT-GACA
* * * * * *
91240 GGCAAACTTAAGGGTGAGGCAGTCTCCAAGGTCAAAGTTGACA
1 GGCAGACTTAAGGGGGAAGAAGTCTCTAAGGTCAAAGCTGACA
*
91283 GGCAAACTTAA
1 GGCAGACTTAA
91294 AATGAAGCAG
Statistics
Matches: 1033, Mismatches: 182, Indels: 70
0.80 0.14 0.05
Matches are distributed among these distances:
37 27 0.03
38 3 0.00
41 3 0.00
42 83 0.08
43 898 0.87
44 16 0.02
45 3 0.00
ACGTcount: A:0.37, C:0.16, G:0.29, T:0.18
Consensus pattern (43 bp):
GGCAGACTTAAGGGGGAAGAAGTCTCTAAGGTCAAAGCTGACA
Found at i:90167 original size:129 final size:127
Alignment explanation
Indices: 90013--91293 Score: 1257
Period size: 129 Copynumber: 10.0 Consensus size: 127
90003 CAAACTTGAG
* * *
90013 GGGGAAGAAGTTTCCAAGGTCAAAGCTGACAAGCAGACTTAAGGGGGAAGAAGTCTCTAGGGTCA
1 GGGGAAGAAGTCTCTAGGGTCAAAGCTGACAAGCAGACTTAAGGGGGAAGAAGTCTCTAGGGTCA
* * * * * *
90078 AAGCTTACAGGCAAACTTAATGGTGAAGAAGTCTCTAGGGTCAAAGCTGATAGGCAGACTTAA
66 AAG-TGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTTAA
* * * * *
90141 GAGGGAAGAAGTCTCCAGGATCAAAGCTAACAAGCAGACTTAGGGGGGAAGAAGTCTCAAGGG-C
1 G-GGGAAGAAGTCTCTAGGGTCAAAGCTGACAAGCAGACTTAAGGGGGAAGAAGTCTCTAGGGTC
* * * *
90205 ----CGATAGGCAGACTTAAGGGTGAAGAAGTCTCTAGGGTCAAAGCCGACAGGTAGACTTAAA
65 AAAGTGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTT-AA
* * * *
90265 GGTGAAGAAATCTCTAGGGTCAAAG-TCGACAAGCAGACTTAA-GGGCAGAGAAGTCTCTAAGGT
1 GGGGAAGAAGTCTCTAGGGTCAAAGCT-GACAAGCAGACTTAAGGGGGA-AGAAGTCTCTAGGGT
* * * * * ** * *
90328 CAAAGCCGACAGACAAACTTAAGGGTGCAA-AAATCTCCAAGGTCAAAGTTGACAAGCAAACTTA
64 CAAAG-TGACAGGCAGACTTAAGGGTG-AAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTTA
90392 A
127 A
* ** * * * *
90393 GGGGAAGAAGTCTCTAGGGTCAAAGCCGACTGGCAAACTTAAAGGGGAAGAAGTCTTTAGGGTTA
1 GGGGAAGAAGTCTCTAGGGTCAAAGCTGACAAGCAGACTTAAGGGGGAAGAAGTCTCTAGGGTCA
* * * * *
90458 AAGCTGATAGGCAGATTTAAGGGTGAAGAAGTCTCCAAGGTCAAAACCGACAGGCAAACTTAA
66 AAG-TGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTTAA
* * * * *
90521 GGGAGAAGAAGTCTCTAGGATCAAAACTAACAAGCAGACTTAAGGGGGAAGAAGTCTCCAAGGTC
1 GGG-GAAGAAGTCTCTAGGGTCAAAGCTGACAAGCAGACTTAAGGGGGAAGAAGTCTCTAGGGTC
* * *
90586 AAAGTCGACAGGTAGACTTAAAAGG-GAAGAAGTCTCTAAGGTCAAAGCCGACAGACAGACTTAA
65 AAAGT-GACAGGCAGACTT-AAGGGTGAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTTAA
* * * * *
90650 GAGGGAAGAAGTCTCTAGGGTCAAA-ATCGATAGGCAGACTTAAGGGGGAAGAAGTCTCCAAGGT
1 G-GGGAAGAAGTCTCTAGGGTCAAAGCT-GACAAGCAGACTTAAGGGGGAAGAAGTCTCTAGGGT
* * * * *
90714 TAAAGTAGACAAGCAGACTTAAGGGTAAAGAAGTCT-TCAGGGTCAAAGCCGACAAGCAGACTTA
64 CAAAGT-GACAGGCAGACTTAAGGGTGAAGAAGTCTCT-AAGGTCAAAGCCGACAGGCAGACTTA
90778 A
127 A
* * * * *
90779 AGGGAAGAAGTCT-TCAGGGTCAAAGCCGA-TAGACAGACTTAAAGGGGAAGAAGTCTCTAAGGT
1 GGGGAAGAAGTCTCT-AGGGTCAAAGCTGACAAG-CAGACTTAAGGGGGAAGAAGTCTCTAGGGT
* *
90842 CAAAGTTGACAGACAGACTTTAA-GGTGAAGAAGTCTCCAAGGTCAAA-CTCGACAGGCAGACTT
64 CAAAG-TGACAGGCAGAC-TTAAGGGTGAAGAAGTCTCTAAGGTCAAAGC-CGACAGGCAGACTT
90905 AA
126 AA
* * ** *
90907 GGGTGAAGAAGTCTCTAGGGTCAAA-ATCGACAGGCAGACTTAAAAGTGAAGAAGTCTCTAGGGT
1 GGG-GAAGAAGTCTCTAGGGTCAAAGCT-GACAAGCAGACTTAAGGGGGAAGAAGTCTCTAGGGT
* * *
90971 CAAAGTCGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGATCAAAGCCGATAGGTAGACTTAA
64 CAAAGT-GACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTTAA
* ** * *
91036 GGTGGAAGAAGTCTCTAAGGTCAAAAATGACAAGCAGACTTAAAGAGGAAGAAGTCT-TCAGGGT
1 GG-GGAAGAAGTCTCTAGGGTCAAAGCTGACAAGCAGACTTAAGGGGGAAGAAGTCTCT-AGGGT
** * * *
91100 CAAGACCGACAGGCAGACTTAAAGAG-GAAGAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTC
64 CAA-AGTGACAGGCAGACTT-AAGGGTGAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTTA
91164 A
127 A
* * * * * * * * *
91165 GGGTGAGGAAGTATTTAGGGTCAAAACCGATAGGTAGACTTAAGGGTGAAGAAGTCTCTAGGGTC
1 GGG-GAAGAAGTCTCTAGGGTCAAAGCTGACAAGCAGACTTAAGGGGGAAGAAGTCTCTAGGGTC
* * * * ** *
91230 AAAGTCGACAGGCAAACTTAAGGGTGAGGCAGTCTCCAAGGTCAAAGTTGACAGGCAAACTTAA
65 AAAGT-GACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTTAA
91294 AATGAAGCAG
Statistics
Matches: 957, Mismatches: 152, Indels: 87
0.80 0.13 0.07
Matches are distributed among these distances:
122 5 0.01
123 94 0.10
124 4 0.00
127 5 0.01
128 226 0.24
129 603 0.63
130 20 0.02
ACGTcount: A:0.37, C:0.16, G:0.29, T:0.18
Consensus pattern (127 bp):
GGGGAAGAAGTCTCTAGGGTCAAAGCTGACAAGCAGACTTAAGGGGGAAGAAGTCTCTAGGGTCA
AAGTGACAGGCAGACTTAAGGGTGAAGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTTAA
Found at i:91412 original size:42 final size:42
Alignment explanation
Indices: 91340--91444 Score: 122
Period size: 42 Copynumber: 2.5 Consensus size: 42
91330 ACGAAGGGCA
* * *
91340 AAAG-AGTCTCCTGGGTCAAAGCCAACGAGCAAACGAAGGAT
1 AAAGAAGTCTCCTGGGCCTAAGCCAACGAGCAAACAAAGGAT
** * *
91381 AAAGAAGTCTCCTGGGCCTAAGCTGATGAGCAAATAAAGGAT
1 AAAGAAGTCTCCTGGGCCTAAGCCAACGAGCAAACAAAGGAT
* *
91423 AGAGAAGTCTCCCGGGCCTAAG
1 AAAGAAGTCTCCTGGGCCTAAG
91445 TGGACTGGTA
Statistics
Matches: 54, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
41 4 0.07
42 50 0.93
ACGTcount: A:0.36, C:0.21, G:0.28, T:0.15
Consensus pattern (42 bp):
AAAGAAGTCTCCTGGGCCTAAGCCAACGAGCAAACAAAGGAT
Found at i:91466 original size:42 final size:42
Alignment explanation
Indices: 91420--91547 Score: 166
Period size: 42 Copynumber: 3.0 Consensus size: 42
91410 GCAAATAAAG
* * ** *
91420 GATAGAGAAGTCTCCCGGGCCTAAGTGGACTGGTAGACAAAA
1 GATAGAGAGGTCTCCCGGGTCTAAGCCGACGGGTAGACAAAA
**
91462 GATAGAGAGGTCTCTAGGGTCTAAGCCGACGGGTAGACAAAA
1 GATAGAGAGGTCTCCCGGGTCTAAGCCGACGGGTAGACAAAA
* * *
91504 GATAAAGAGGTCTCCCGGGTCTAAGCCGATGGGTAAACAAAA
1 GATAGAGAGGTCTCCCGGGTCTAAGCCGACGGGTAGACAAAA
91546 GA
1 GA
91548 CCAAAGGCAT
Statistics
Matches: 74, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 74 1.00
ACGTcount: A:0.34, C:0.18, G:0.31, T:0.16
Consensus pattern (42 bp):
GATAGAGAGGTCTCCCGGGTCTAAGCCGACGGGTAGACAAAA
Found at i:92393 original size:90 final size:89
Alignment explanation
Indices: 92217--92436 Score: 268
Period size: 90 Copynumber: 2.5 Consensus size: 89
92207 AAGGATATCG
* * *
92217 GGCTTTGTGATGCTTCAATACTATCTAATGGTTAGATGAAAGGGATATAATTGGGAATATGTGGG
1 GGCTTTGTGATGCATCAATACTATCTAATGGTTAGA-GAAAGGGACACAATTGGGAATATGTGGG
92282 CTGCACCTTGCTCCAAAGGAAATTA
65 CTGCACCTTGCTCCAAAGGAAATTA
* * * * *
92307 GGCTTTGTGATGCATCAATACCATCTAGTGGTT-GAGAAAGAGGGGACACGATTGGGAGTGTGTG
1 GGCTTTGTGATGCATCAATACTATCTAATGGTTAGAG-AA-A-GGGACACAATTGGGAATATGTG
* *
92371 GGCTGCTCCTTGCTCC-ATGGAAATTA
63 GGCTGCACCTTGCTCCAAAGGAAATTA
*
92397 GACTTTGTGATGCATCAATACTATCTAA-GAGTTA-AGAAAG
1 GGCTTTGTGATGCATCAATACTATCTAATG-GTTAGAGAAAG
92437 AAGAAATTAA
Statistics
Matches: 112, Mismatches: 13, Indels: 13
0.81 0.09 0.09
Matches are distributed among these distances:
87 1 0.01
88 2 0.02
89 7 0.06
90 70 0.62
91 32 0.29
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.30
Consensus pattern (89 bp):
GGCTTTGTGATGCATCAATACTATCTAATGGTTAGAGAAAGGGACACAATTGGGAATATGTGGGC
TGCACCTTGCTCCAAAGGAAATTA
Found at i:93042 original size:88 final size:86
Alignment explanation
Indices: 92862--93029 Score: 192
Period size: 88 Copynumber: 1.9 Consensus size: 86
92852 GCATCAGGTG
* * ** ** ** *
92862 GCAAATGCATATGTAATGATGCAAATGCCAATGTTATTCGAATGCAAATGCATGTAAAATGATAT
1 GCAAATGCATATGCAATGATGCAAATACCAATGCCATTAAAATGCAAATGCATGTAAAACAACAT
92927 AAATGCAAGCATCAACAAAGA
66 AAATGCAAGCATCAACAAAGA
* * * *
92948 GGCAAATGCATATGCCATGATGCAAATACCAATGCCATCTAAAATGCAAATGTATGTGAGACAAC
1 -GCAAATGCATATGCAATGATGCAAATACCAATGCCAT-TAAAATGCAAATGCATGTAAAACAAC
*
93013 ATAAATGTAAGCATCAA
64 ATAAATGCAAGCATCAA
93030 TAGAATGACA
Statistics
Matches: 66, Mismatches: 14, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
87 32 0.48
88 34 0.52
ACGTcount: A:0.43, C:0.16, G:0.17, T:0.23
Consensus pattern (86 bp):
GCAAATGCATATGCAATGATGCAAATACCAATGCCATTAAAATGCAAATGCATGTAAAACAACAT
AAATGCAAGCATCAACAAAGA
Found at i:98317 original size:157 final size:155
Alignment explanation
Indices: 97739--98413 Score: 665
Period size: 155 Copynumber: 4.3 Consensus size: 155
97729 CCCATAAGGG
* * * * * * * * *
97739 ATACCTTCGATGTAAAAGTA-CCTGATACCCCTAAAGGAACTAAAAAGGA-TAGAAATGAGAT-A
1 ATACATTCGACGTAAAAGTACCCCGACAACCCTAAAAGACCTAAAAA-GACTAGAAAAGGGATGA
* * ** * * *
97801 CACCTATCCTAAATGCCTACCTTCGACATAAAAGCGGACTCAATGATGAC-A--TAAAAGTTGGT
65 -ACCTATCCTAAATGCCCACCTTCGGCATAAAAGCGGAC-C--TGATGACAACCTAGGACTCGAT
** * *
97863 TCT-AGAAAATTACAAAAATGCCCCTAAGGG-
126 TCTAAG-AAATTATGAAAAT-ACCCTATGGGT
** * * * *
97893 ATACATTCGACGTAAAAGTA-CTTGA-TACCCTTAAAGGACTTAAAAAGACTAGAAATGGTGATG
1 ATACATTCGACGTAAAAGTACCCCGACAACCC-TAAAAGACCTAAAAAGACTAGAAAAGG-GATG
* * * * * *
97956 AAGCTATCATAAATGCCCACTTTCGGCATAAAAGCGGACCCGATGATAACCTAGGACTAGATTCT
64 AACCTATCCTAAATGCCCACCTTCGGCATAAAAGCGGACCTGATGACAACCTAGGACTCGATTCT
*
98021 AAGAAATTACGAAAATAACCCTATGGGT
129 AAGAAATTATGAAAAT-ACCCTATGGGT
* * * *
98049 ATACTTTCGATGTAAAAGT-CCCCGGCAACCCTAAAAGACCTAAAAAGACTAGAAAATGGATGAA
1 ATACATTCGACGTAAAAGTACCCCGACAACCCTAAAAGACCTAAAAAGACTAGAAAAGGGATGAA
* *
98113 CCTATCCTAAATGCCCACCTTCGGCATAAAAGCGGA-CTCGATGACAACCTAGGACTCGGTTTTA
66 CCTATCCTAAATGCCCACCTTCGGCATAAAAGCGGACCT-GATGACAACCTAGGACTCGATTCTA
*
98177 GGAAATTATGAAAATACCTCTATGGGT
130 AGAAATTATGAAAATACC-CTATGGGT
*
98204 ATACATTCGACGTAAATGTACCCCGACAACCCTAAAAGACCTAAAAAGACTAGAAAAAGGGATGA
1 ATACATTCGACGTAAAAGTACCCCGACAACCCTAAAAGACCTAAAAAGACTAG-AAAAGGGATGA
* * *
98269 ACCTATCCCAAATGCCCACCTTCGGCATAAAAGCGAACCTGGTGACAACCTAGGACTCGATTCTA
65 ACCTATCCTAAATGCCCACCTTCGGCATAAAAGCGGACCTGATGACAACCTAGGACTCGATTCTA
*
98334 AGAAATTATGAAAATGCCCCTATGGGT
130 AGAAATTATGAAAAT-ACCCTATGGGT
* * * * *
98361 ATA-ACTTCGACGTAAATGTACCTCAACAACCCTAAAGGACTTAAAAAAGACTA
1 ATACA-TTCGACGTAAAAGTACCCCGACAACCCTAAAAGACCT-AAAAAGACTA
98414 TAGACGTAAG
Statistics
Matches: 442, Mismatches: 60, Indels: 34
0.82 0.11 0.06
Matches are distributed among these distances:
152 5 0.01
153 6 0.01
154 48 0.11
155 162 0.37
156 78 0.18
157 129 0.29
158 14 0.03
ACGTcount: A:0.39, C:0.22, G:0.17, T:0.22
Consensus pattern (155 bp):
ATACATTCGACGTAAAAGTACCCCGACAACCCTAAAAGACCTAAAAAGACTAGAAAAGGGATGAA
CCTATCCTAAATGCCCACCTTCGGCATAAAAGCGGACCTGATGACAACCTAGGACTCGATTCTAA
GAAATTATGAAAATACCCTATGGGT
Found at i:98357 original size:312 final size:309
Alignment explanation
Indices: 97715--98413 Score: 789
Period size: 312 Copynumber: 2.2 Consensus size: 309
97705 AGTTTAAAAA
* * * * * * * *
97715 AAATTACGAAAACGCCCATAAGGG-ATACCTTCGATGTAAAAGTACCTGATACCCCTAAAGGAAC
1 AAATTACGAAAATGCCCCTATGGGTATA-CTTCGATGTAAAAGTCCCCGACAACCCTAAAGGACC
*
97779 TAAAAAGGA-TAGAAATGAGATACACCTATCCTAAATGCCTACCTTCGACATAAAAGCGGACTCA
65 TAAAAA-GACTAGAAATGAGATACACCTATCCTAAATGCCCACCTTCGACATAAAAGCGGACTCA
** * * *
97843 ATGATGACATAAAAGTTGGTTCTAGAAAATTACAAAAATGCCCCTAAGGGATACATTCGACGTAA
129 ATGACAACATAAAACTCGGTTCTAGAAAATTACAAAAATACCCCTAAGGGATACATTCGACGTAA
** * * * * * *
97908 AAGTACTTGATACCCTTAAAGGACTTAAAAAGACTAGAAATGGTGATGAAGCTATCATAAATGCC
194 AAGTACCCGAAACCCTTAAAAGACCTAAAAAGACTAGAAAAGGTGATGAACCTATCACAAATGCC
* * *
97973 CACTTTCGGCATAAAAGCGGACCCGATGATAACCTAGGACTAGATTCTAAG
259 CACCTTCGGCATAAAAGCGAACCCGATGACAACCTAGGACTAGATTCTAAG
** * *
98024 AAATTACGAAAATAACCCTATGGGTATACTTTCGATGTAAAAGTCCCCGGCAACCCTAAAAGACC
1 AAATTACGAAAATGCCCCTATGGGTATAC-TTCGATGTAAAAGTCCCCGACAACCCTAAAGGACC
*
98089 TAAAAAGACTAGAAAATG-GATGA-ACCTATCCTAAATGCCCACCTTCGGCATAAAAGCGGACTC
65 TAAAAAGACTAG-AAATGAGAT-ACACCTATCCTAAATGCCCACCTTCGACATAAAAGCGGACTC
* * ** * * ** * *
98152 GATGACAACCTAGGACTCGGTTTTAGGAAATTATGAAAATACCTCTATGGGTATACATTCGACGT
128 AATGACAACATAAAACTCGGTTCTAGAAAATTACAAAAATACCCCTAAGGG-ATACATTCGACGT
* *
98217 AAATGTACCCCGACAACCC-TAAAAGACCTAAAAAGACTAGAAAAAGG-GATGAACCTATCCCAA
192 AAAAGTA-CCCGA-AACCCTTAAAAGACCTAAAAAGACTAG-AAAAGGTGATGAACCTATCACAA
* * *
98280 ATGCCCACCTTCGGCATAAAAGCGAACCTGGTGACAACCTAGGACTCGATTCTAAG
254 ATGCCCACCTTCGGCATAAAAGCGAACCCGATGACAACCTAGGACTAGATTCTAAG
* * * * *
98336 AAATTATGAAAATGCCCCTATGGGTATAACTTCGACGTAAATGTACCTCAACAACCCTAAAGGAC
1 AAATTACGAAAATGCCCCTATGGGTAT-ACTTCGATGTAAAAGT-CCCCGACAACCCTAAAGGAC
*
98401 TTAAAAAAGACTA
64 CT-AAAAAGACTA
98414 TAGACGTAAG
Statistics
Matches: 323, Mismatches: 55, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
309 22 0.07
310 117 0.36
311 25 0.08
312 121 0.37
313 28 0.09
314 10 0.03
ACGTcount: A:0.39, C:0.22, G:0.18, T:0.21
Consensus pattern (309 bp):
AAATTACGAAAATGCCCCTATGGGTATACTTCGATGTAAAAGTCCCCGACAACCCTAAAGGACCT
AAAAAGACTAGAAATGAGATACACCTATCCTAAATGCCCACCTTCGACATAAAAGCGGACTCAAT
GACAACATAAAACTCGGTTCTAGAAAATTACAAAAATACCCCTAAGGGATACATTCGACGTAAAA
GTACCCGAAACCCTTAAAAGACCTAAAAAGACTAGAAAAGGTGATGAACCTATCACAAATGCCCA
CCTTCGGCATAAAAGCGAACCCGATGACAACCTAGGACTAGATTCTAAG
Found at i:100657 original size:140 final size:141
Alignment explanation
Indices: 100509--100763 Score: 422
Period size: 140 Copynumber: 1.8 Consensus size: 141
100499 ATCGCCTCGA
* *
100509 AAAAAATTACGGAGTAAAAAATACCATATTTTGGAAAAAGGAAATTTCAAGGAAAAAATTTCAAA
1 AAAAAATTACGGAGTAAAAAATACCATATTTTGGAAAAAAGAAATTTCAAGGAAAAAATTTAAAA
*
100574 ACTCATGAAAACGAATGAATTTTTAAAAACTAAATTTATATGAAA-AAATTTAAAAAACTCAAAA
66 ACTCATGAAAACGAATGAATTTTTAAAAACTAAATTAATATGAAATAAATTTAAAAAACTCAAAA
100638 AATCCCTTCAG
131 AATCCCTTCAG
* *
100649 AAAAAATTACGGAGTAAAAAATATCGTATTTTGGAAAAAAGAAATTTCAAGGAAAAAATTTAAAA
1 AAAAAATTACGGAGTAAAAAATACCATATTTTGGAAAAAAGAAATTTCAAGGAAAAAATTTAAAA
* * * *
100714 ACTCATGAAAATGAATGAATTTTTGAAAATTGAATTAATATGAAATAAAT
66 ACTCATGAAAACGAATGAATTTTTAAAAACTAAATTAATATGAAATAAAT
100764 GATAATATTT
Statistics
Matches: 105, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
140 101 0.96
141 4 0.04
ACGTcount: A:0.54, C:0.08, G:0.11, T:0.27
Consensus pattern (141 bp):
AAAAAATTACGGAGTAAAAAATACCATATTTTGGAAAAAAGAAATTTCAAGGAAAAAATTTAAAA
ACTCATGAAAACGAATGAATTTTTAAAAACTAAATTAATATGAAATAAATTTAAAAAACTCAAAA
AATCCCTTCAG
Found at i:100892 original size:163 final size:163
Alignment explanation
Indices: 100635--100983 Score: 463
Period size: 163 Copynumber: 2.1 Consensus size: 163
100625 AAAAAACTCA
* * * *
100635 AAAAATCCCTTCAGAAAAAATTACGGAGTAAAAAATATCGTATTTTGGAAAAAAGAAATTTCAAG
1 AAAAATCCCCTCA-AAAAAATTACAGAGTAAAAAATACCGTATTTTCGAAAAAAGAAATTTCAA-
* * *
100700 GAAAAAATTTAAAAACTCATGAAAATGAATGAATTTTTGAAAATTGAATTAATATGAAATAAATG
64 GAAAAAATTAAAAAACTCATGAAAATGAATGAATTTTTAAAAATTGAATTAATATGAAATAAATA
*
100765 ATAATATTTGATGAATTTTAAAAATTGAAAACCAAG
129 ATAATATTTGATGAATTTT-AAAATTAAAAACCAAG
* * *
100801 AAAAATCCCCTCAAAAAAATTATAGATTAGAAAATACCGTA-TTTCGATAAAAGAGAAATTTCAA
1 AAAAATCCCCTCAAAAAAATTACAGAGTAAAAAATACCGTATTTTCGA-AAAA-AGAAATTTCAA
* *
100865 -AAAAAA-TAAAAAACTCATGAAAATGAATTAATTTTTAAAAATTGATTTAATATGAAATAAATA
64 GAAAAAATTAAAAAACTCATGAAAATGAATGAATTTTTAAAAATTGAATTAATATGAAATAAATA
* **
100928 ATAATATTTGGTGAATTTTAAAATTAAAAATTAAG
129 ATAATATTTGATGAATTTTAAAATTAAAAACCAAG
100963 AAAAATCCTCC-CGAAAAAAAT
1 AAAAATCC-CCTC-AAAAAAAT
100984 CACGGAGAAG
Statistics
Matches: 163, Mismatches: 16, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
162 22 0.13
163 80 0.49
164 11 0.07
165 27 0.17
166 23 0.14
ACGTcount: A:0.53, C:0.08, G:0.10, T:0.29
Consensus pattern (163 bp):
AAAAATCCCCTCAAAAAAATTACAGAGTAAAAAATACCGTATTTTCGAAAAAAGAAATTTCAAGA
AAAAATTAAAAAACTCATGAAAATGAATGAATTTTTAAAAATTGAATTAATATGAAATAAATAAT
AATATTTGATGAATTTTAAAATTAAAAACCAAG
Found at i:104473 original size:13 final size:13
Alignment explanation
Indices: 104455--104480 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
104445 CAATTTTTGG
104455 TGTATCGATACAT
1 TGTATCGATACAT
104468 TGTATCGATACAT
1 TGTATCGATACAT
104481 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:104492 original size:32 final size:33
Alignment explanation
Indices: 104435--104498 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
104425 TACAAGCCAA
**
104435 TGTATCGATACAATTTTTGGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
104468 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
104499 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:104505 original size:19 final size:18
Alignment explanation
Indices: 104435--104505 Score: 62
Period size: 19 Copynumber: 4.0 Consensus size: 18
104425 TACAAGCCAA
104435 TGTATCGATACAATTTTTGG
1 TGTATCGATACAA--TTTGG
104455 TGTATCGATAC-A--T--
1 TGTATCGATACAATTTGG
*
104468 TGTATCGATACATACTTGG
1 TGTATCGATACA-ATTTGG
104487 TGTATCGATACAAGTTTGG
1 TGTATCGATACAA-TTTGG
104506 CTACTGCCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 15
0.73 0.02 0.25
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 1 0.02
18 1 0.02
19 17 0.40
20 11 0.26
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.39
Consensus pattern (18 bp):
TGTATCGATACAATTTGG
Found at i:107023 original size:13 final size:13
Alignment explanation
Indices: 107005--107043 Score: 78
Period size: 13 Copynumber: 3.0 Consensus size: 13
106995 ATAATCACCC
107005 TGTATCGATACAA
1 TGTATCGATACAA
107018 TGTATCGATACAA
1 TGTATCGATACAA
107031 TGTATCGATACAA
1 TGTATCGATACAA
107044 AGAAAAATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:109142 original size:15 final size:15
Alignment explanation
Indices: 109122--109152 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
109112 ATTTCGTTTG
*
109122 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
109137 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
109152 G
1 G
109153 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:110977 original size:21 final size:22
Alignment explanation
Indices: 110952--110998 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
110942 GCAAGTTTTC
* *
110952 ATTTTCCTTAGCTAAC-TCATT
1 ATTTTCATTAGCCAACTTCATT
*
110973 ATTTTCATTAGCCAACTTCTTT
1 ATTTTCATTAGCCAACTTCATT
110995 ATTT
1 ATTT
110999 CAACTCGCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.23, C:0.21, G:0.04, T:0.51
Consensus pattern (22 bp):
ATTTTCATTAGCCAACTTCATT
Found at i:112743 original size:36 final size:36
Alignment explanation
Indices: 112696--112781 Score: 154
Period size: 36 Copynumber: 2.4 Consensus size: 36
112686 AAGGCAAAGG
112696 TATAACCTTACAACTCGTATCTTTTATGGGCTAAGA
1 TATAACCTTACAACTCGTATCTTTTATGGGCTAAGA
112732 TATAACCTTACAACTCGTATCTTTTATGGGCTAAGA
1 TATAACCTTACAACTCGTATCTTTTATGGGCTAAGA
*
112768 TACCAACCTTACAA
1 TA-TAACCTTACAA
112782 TCTCTTTGCG
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
36 38 0.79
37 10 0.21
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.34
Consensus pattern (36 bp):
TATAACCTTACAACTCGTATCTTTTATGGGCTAAGA
Found at i:113272 original size:13 final size:13
Alignment explanation
Indices: 113254--113279 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
113244 CAATTTTTGG
113254 TGTATCGATACAT
1 TGTATCGATACAT
113267 TGTATCGATACAT
1 TGTATCGATACAT
113280 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:113295 original size:32 final size:33
Alignment explanation
Indices: 113234--113297 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
113224 TACAAGCCAA
** *
113234 TGTATCGATACAATTTTTGGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTACCGATACAT
113267 TGTATCGATAC-ATACTTGGTGTACCGATACA
1 TGTATCGATACAATACTTGGTGTACCGATACA
113298 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.38
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTACCGATACAT
Found at i:115334 original size:21 final size:20
Alignment explanation
Indices: 115308--115361 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 20
115298 TTATAAGCCA
115308 ATGTATCGATACAAT-TTGGT
1 ATGTATCGATACAATCTT-GT
115328 CATGTATCGATAC-ATCTTGT
1 -ATGTATCGATACAATCTTGT
*
115348 GTGTATCGATACAA
1 ATGTATCGATACAA
115362 ATAGCTAAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 11 0.37
20 5 0.17
21 14 0.47
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACAATCTTGT
Found at i:115460 original size:13 final size:13
Alignment explanation
Indices: 115442--115466 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
115432 ACATTTGGTC
115442 ATGTATCGATACA
1 ATGTATCGATACA
115455 ATGTATCGATAC
1 ATGTATCGATAC
115467 TGTGCATTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:117016 original size:14 final size:15
Alignment explanation
Indices: 116992--117025 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
116982 TATATTTTTA
*
116992 AAAAATATAATAATT
1 AAAAATATAATAAAT
117007 AAAAAT-TAATAAAT
1 AAAAATATAATAAAT
117021 AAAAA
1 AAAAA
117026 ATTTTAACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
AAAAATATAATAAAT
Found at i:117026 original size:15 final size:14
Alignment explanation
Indices: 116990--117028 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
116980 CATATATTTT
116990 TAAAAAATATAATAA
1 TAAAAAAT-TAATAA
*
117005 TTAAAAATTAATAAA
1 TAAAAAATTAAT-AA
117020 TAAAAAATT
1 TAAAAAATT
117029 TTAACTTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 4 0.19
15 17 0.81
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
TAAAAAATTAATAA
Found at i:117306 original size:16 final size:16
Alignment explanation
Indices: 117285--117318 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
117275 AATTACTTAA
*
117285 TATTTATTAGTATAAT
1 TATTTATTAATATAAT
117301 TATTTATTAATATAAT
1 TATTTATTAATATAAT
117317 TA
1 TA
117319 ATTAAAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (16 bp):
TATTTATTAATATAAT
Found at i:122043 original size:68 final size:68
Alignment explanation
Indices: 121922--122052 Score: 190
Period size: 68 Copynumber: 1.9 Consensus size: 68
121912 AATCACATAT
* ** * * * *
121922 CCAAAAATTAAATGGGTTTCTTTAAACGATACCCAAACTAGAATAAGGTTACTCTAAACCCTACA
1 CCAAAAATCAAATGGGTTAATTTAAACGACACCCAAACTAAAACAAGGCTACTCTAAACCCTACA
121987 TTC
66 TTC
*
121990 CCAAAAATCAAATGGGTTAATTTGAACGACACCCAAACTAAAACAAGGCTACTCTAAACCCTA
1 CCAAAAATCAAATGGGTTAATTTAAACGACACCCAAACTAAAACAAGGCTACTCTAAACCCTA
122053 AACTAAAAAG
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
68 55 1.00
ACGTcount: A:0.42, C:0.24, G:0.11, T:0.24
Consensus pattern (68 bp):
CCAAAAATCAAATGGGTTAATTTAAACGACACCCAAACTAAAACAAGGCTACTCTAAACCCTACA
TTC
Found at i:122593 original size:18 final size:18
Alignment explanation
Indices: 122572--122626 Score: 60
Period size: 17 Copynumber: 3.1 Consensus size: 18
122562 TAATATTTAA
122572 TTTATATTTAAATAAAAT
1 TTTATATTTAAATAAAAT
* *
122590 TTTA-ATATAAA-ATAAT
1 TTTATATTTAAATAAAAT
*
122606 TTTTTATTTAAAATAAAAT
1 TTTATATTT-AAATAAAAT
122625 TT
1 TT
122627 ATTTCAATAC
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
16 7 0.24
17 9 0.31
18 7 0.24
19 6 0.21
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTATATTTAAATAAAAT
Found at i:122829 original size:165 final size:171
Alignment explanation
Indices: 122606--122937 Score: 464
Period size: 165 Copynumber: 2.0 Consensus size: 171
122596 ATAAAATAAT
122606 TTTTTATTTAAAATAAAATTTATTTCAATACAATAAAAATATAAGTATTTATTTAAAAAATAATT
1 TTTTTATTTAAAATAAAATTTATTTCAATACAATAAAAATATAAGTATTTATTTAAAAAATAATT
* * * * * *
122671 TAAAAC-CTTTTTAATATTTTAATTA-TAAA-ATGT-G-TAA-CAAGTCTTTATAATATAAATTT
66 CAAAACTCTTTTTAATATTTTAACTACAAAATATATAGACAAGCAAGTCTTTATAATATAAATCT
* *
122730 AAATTTAATTCATTACTTTTTTAATTTATTAAATTTTTAAAA
131 AAATTAAATTCATTACTTTTCT-ATTTATTAAATTTTTAAAA
*
122772 TTTTTATTTAAAATAAAATTT-TCTT-AATTCAATAAAAATATAAGTATTTATTTAAAAAATAAT
1 TTTTTATTTAAAATAAAATTTAT-TTCAATACAATAAAAATATAAGTATTTATTTAAAAAATAAT
* *
122835 TCAAAGCTTTTTTTAATATTTTAACTACAAAATATATACGACAAGCAAGTCTTTATAATATAAAT
65 TCAAAACTCTTTTTAATATTTTAACTACAAAATATATA-GACAAGCAAGTCTTTATAATATAAAT
* *
122900 CTCAATTAAATTTATTACTTTTCTATTTATTAAATTTT
129 CTAAATTAAATTCATTACTTTTCTATTTATTAAATTTT
122938 AATATATTTG
Statistics
Matches: 145, Mismatches: 13, Indels: 11
0.86 0.08 0.07
Matches are distributed among these distances:
165 43 0.30
166 40 0.28
167 3 0.02
168 3 0.02
170 1 0.01
171 16 0.11
172 39 0.27
ACGTcount: A:0.44, C:0.07, G:0.03, T:0.47
Consensus pattern (171 bp):
TTTTTATTTAAAATAAAATTTATTTCAATACAATAAAAATATAAGTATTTATTTAAAAAATAATT
CAAAACTCTTTTTAATATTTTAACTACAAAATATATAGACAAGCAAGTCTTTATAATATAAATCT
AAATTAAATTCATTACTTTTCTATTTATTAAATTTTTAAAA
Found at i:123854 original size:22 final size:22
Alignment explanation
Indices: 123829--123890 Score: 63
Period size: 24 Copynumber: 2.7 Consensus size: 22
123819 ATATTTAAAA
123829 TATTATATATTTATATAAATTT
1 TATTATATATTTATATAAATTT
* *
123851 TATTATATTAAATTATAAAAATTT
1 TATTATA-T-ATTTATATAAATTT
*
123875 TAGTATAT-TTGTATAT
1 TATTATATATT-TATAT
123891 TTATATTACC
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
21 1 0.03
22 11 0.34
23 2 0.06
24 18 0.56
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (22 bp):
TATTATATATTTATATAAATTT
Found at i:123870 original size:42 final size:44
Alignment explanation
Indices: 123806--123889 Score: 102
Period size: 42 Copynumber: 2.0 Consensus size: 44
123796 TTATGTTATT
*
123806 TTTTATTATACTCATATTT-AAAATATTA-TATATTTATATAAA
1 TTTTATTATACTCAAATTTAAAAATATTAGTATATTTATATAAA
* * *
123848 TTTTATTATA-TTAAATTATAAAAATTTTAGTATATTTGTATA
1 TTTTATTATACTCAAATT-TAAAAATATTAGTATATTTATATA
123890 TTTATATTAC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
41 5 0.14
42 11 0.31
43 8 0.23
44 11 0.31
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (44 bp):
TTTTATTATACTCAAATTTAAAAATATTAGTATATTTATATAAA
Found at i:128925 original size:35 final size:35
Alignment explanation
Indices: 128885--128956 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
128875 TTTTCCTAAG
128885 ATTGTTGATCTAACTTTAAAGAAAATGTTAAGTTC
1 ATTGTTGATCTAACTTTAAAGAAAATGTTAAGTTC
*
128920 ATTGTTGATCTAACTTTAAGGAAAATGTTAAGTTC
1 ATTGTTGATCTAACTTTAAAGAAAATGTTAAGTTC
128955 AT
1 AT
128957 GCTAGTCCCT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.36, C:0.08, G:0.15, T:0.40
Consensus pattern (35 bp):
ATTGTTGATCTAACTTTAAAGAAAATGTTAAGTTC
Found at i:131399 original size:156 final size:157
Alignment explanation
Indices: 131032--131640 Score: 872
Period size: 158 Copynumber: 3.9 Consensus size: 157
131022 TCTCGAGAAC
* * * * * * *
131032 ATTAATTCAATTTAATTTTATTTATTCTCGAAAATACAATTTCATACTCTAATGAAAGCTCAAAA
1 ATTAATTCAATTTAATTTTATTTATTTTCGAAAATACTATTTCGTACCCTAATGGAAGCCCGAAA
* * *
131097 GGATACGAAAATATCTTTGAAATCTTTTATACCCCTACGGATGCCTATAGGAATATAAAAGATTA
66 GGATACGAAAACATTTTTGAAATCTTTTATACCCCTACGGATGCCCATAGGAATATAAAAGATTA
131162 GAAAAAAATTAAAATTTAATTC-AAAAGT
131 G-AAAAAATTAAAATTTAATTCGAAAA-T
*
131190 ATTAATTCAATTTAATTTTATTTATTTTTGAAAATACTATTTCGTACCCTAATGGAAGCCCGAAA
1 ATTAATTCAATTTAATTTTATTTATTTTCGAAAATACTATTTCGTACCCTAATGGAAGCCCGAAA
* * *
131255 GGATATGAAAACGTTTTTGAAATCTTTTATACCCCTACGGATGCCCATAAGAATATAAAAGATTA
66 GGATACGAAAACATTTTTGAAATCTTTTATACCCCTACGGATGCCCATAGGAATATAAAAGATTA
131320 G-AAAAATTAAAATTTAATTCGAAAAT
131 GAAAAAATTAAAATTTAATTCGAAAAT
* *
131346 ATTAATTCAATTTAATTTTATTTATTTTCAAAAATACTATTTCGTACCTTAATGGAAGCCCGAAA
1 ATTAATTCAATTTAATTTTATTTATTTTCGAAAATACTATTTCGTACCCTAATGGAAGCCCGAAA
* * * *
131411 GTATACGAAAATATTTTTGAAATCTTTTATA-CCC-A--AATGCCCATAGGAATATAAAAAATTA
66 GGATACGAAAACATTTTTGAAATCTTTTATACCCCTACGGATGCCCATAGGAATATAAAAGATTA
* * *
131472 GAAAAAAAATTAGAATTTAATCCGAAAGT
131 G--AAAAAATTAAAATTTAATTCGAAAAT
*
131501 ATTAATTCAATTTAATTTTATTTATTTTTGAAAATACTATTTCGTACCCTAATGGAAGCCCG-AA
1 ATTAATTCAATTTAATTTTATTTATTTTCGAAAATACTATTTCGTACCCTAATGGAAGCCCGAAA
* * *
131565 GAGATACGAAAACATTTTTGAAGTCTTTTATACCCCTACAGATGCCTATAGGAATATAAAAGATT
66 G-GATACGAAAACATTTTTGAAATCTTTTATACCCCTACGGATGCCCATAGGAATATAAAAGATT
*
131630 GGAAAAAATTA
130 AGAAAAAATTA
131641 TTGTTAAAAT
Statistics
Matches: 405, Mismatches: 37, Indels: 19
0.88 0.08 0.04
Matches are distributed among these distances:
152 24 0.06
154 4 0.01
155 111 0.27
156 112 0.28
157 14 0.03
158 117 0.29
159 23 0.06
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.35
Consensus pattern (157 bp):
ATTAATTCAATTTAATTTTATTTATTTTCGAAAATACTATTTCGTACCCTAATGGAAGCCCGAAA
GGATACGAAAACATTTTTGAAATCTTTTATACCCCTACGGATGCCCATAGGAATATAAAAGATTA
GAAAAAATTAAAATTTAATTCGAAAAT
Found at i:131585 original size:311 final size:313
Alignment explanation
Indices: 131032--131636 Score: 941
Period size: 311 Copynumber: 1.9 Consensus size: 313
131022 TCTCGAGAAC
* *
131032 ATTAATTCAATTTAATTTTATTTATTCTCGAAAATACAATTTCATACTCTAATGAAAGCTCAAAA
1 ATTAATTCAATTTAATTTTATTTATTCTCAAAAATACAATTTCATACTCTAATGAAAGCCCAAAA
* * *
131097 GGATACGAAAATATCTTTGAAATCTTTTATACCCCTACGGATGCCTATAGGAATATAAAAGATTA
66 GGATACGAAAATATCTTTGAAATCTTTTATACCCCTAC-AATGCCCATAGGAATATAAAAAATTA
*
131162 GAAAAAAATTAAAATTTAATTCAAAAGTATTAATTCAATTTAATTTTATTTATTTTTGAAAATAC
130 GAAAAAAATTAAAATTTAATCCAAAAGTATTAATTCAATTTAATTTTATTTATTTTTGAAAATAC
* *
131227 TATTTCGTACCCTAATGGAAGCCCGAAAGGATATGAAAACGTTTTTGAAATCTTTTATACCCCTA
195 TATTTCGTACCCTAATGGAAGCCCGAAAGGATACGAAAACATTTTTGAAATCTTTTATACCCCTA
*
131292 CGGATGCCCATAAGAATATAAAAGATTAGAAAAATTAAAATTTAATTCGAAAAT
260 CAGATGCCCATAAGAATATAAAAGATTAGAAAAATTAAAATTTAATTCGAAAAT
* * * * *
131346 ATTAATTCAATTTAATTTTATTTATTTTCAAAAATACTATTTCGTAC-CTTAATGGAAGCCCGAA
1 ATTAATTCAATTTAATTTTATTTATTCTCAAAAATACAATTTCATACTC-TAATGAAAGCCCAAA
* *
131410 AGTATACGAAAATATTTTTGAAATCTTTTATA-CCC-A-AATGCCCATAGGAATATAAAAAATTA
65 AGGATACGAAAATATCTTTGAAATCTTTTATACCCCTACAATGCCCATAGGAATATAAAAAATTA
* *
131472 GAAAAAAAATTAGAATTTAATCCGAAAGTATTAATTCAATTTAATTTTATTTATTTTTGAAAATA
130 G-AAAAAAATTAAAATTTAATCCAAAAGTATTAATTCAATTTAATTTTATTTATTTTTGAAAATA
*
131537 CTATTTCGTACCCTAATGGAAGCCCG-AAGAGATACGAAAACATTTTTGAAGTCTTTTATACCCC
194 CTATTTCGTACCCTAATGGAAGCCCGAAAG-GATACGAAAACATTTTTGAAATCTTTTATACCCC
* * *
131601 TACAGATGCCTATAGGAATATAAAAGATTGGAAAAA
258 TACAGATGCCCATAAGAATATAAAAGATTAGAAAAA
131637 ATTATTGTTA
Statistics
Matches: 266, Mismatches: 22, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
310 27 0.10
311 149 0.56
312 1 0.00
313 4 0.02
314 85 0.32
ACGTcount: A:0.41, C:0.13, G:0.11, T:0.35
Consensus pattern (313 bp):
ATTAATTCAATTTAATTTTATTTATTCTCAAAAATACAATTTCATACTCTAATGAAAGCCCAAAA
GGATACGAAAATATCTTTGAAATCTTTTATACCCCTACAATGCCCATAGGAATATAAAAAATTAG
AAAAAAATTAAAATTTAATCCAAAAGTATTAATTCAATTTAATTTTATTTATTTTTGAAAATACT
ATTTCGTACCCTAATGGAAGCCCGAAAGGATACGAAAACATTTTTGAAATCTTTTATACCCCTAC
AGATGCCCATAAGAATATAAAAGATTAGAAAAATTAAAATTTAATTCGAAAAT
Found at i:132330 original size:59 final size:59
Alignment explanation
Indices: 132260--132374 Score: 203
Period size: 59 Copynumber: 1.9 Consensus size: 59
132250 CCTAAGTATA
*
132260 TTCACATTCTTCCACCATATACTTAAACAAACTTGAAATCACAACAAATATACATGCTG
1 TTCACATTCTTCCACCATATACTCAAACAAACTTGAAATCACAACAAATATACATGCTG
* *
132319 TTCATATTCTTCCACCATATACTCAAACAAACTTGGAATCACAACAAATATACATG
1 TTCACATTCTTCCACCATATACTCAAACAAACTTGAAATCACAACAAATATACATG
132375 TTGAAATGGA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 53 1.00
ACGTcount: A:0.41, C:0.25, G:0.05, T:0.29
Consensus pattern (59 bp):
TTCACATTCTTCCACCATATACTCAAACAAACTTGAAATCACAACAAATATACATGCTG
Found at i:132498 original size:22 final size:21
Alignment explanation
Indices: 132473--132529 Score: 71
Period size: 22 Copynumber: 2.7 Consensus size: 21
132463 AGCCTAGTTT
132473 TTTTATTTTTTTCTATATTTTC
1 TTTTATTTTTTTCTAT-TTTTC
*
132495 TTTTATTTTTTTC-CTTTTTC
1 TTTTATTTTTTTCTATTTTTC
*
132515 TTTTTTCTTTTTTCT
1 TTTTAT-TTTTTTCT
132530 TTCTCTCTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 10 0.32
21 8 0.26
22 13 0.42
ACGTcount: A:0.07, C:0.12, G:0.00, T:0.81
Consensus pattern (21 bp):
TTTTATTTTTTTCTATTTTTC
Found at i:132511 original size:14 final size:13
Alignment explanation
Indices: 132490--132554 Score: 60
Period size: 13 Copynumber: 4.8 Consensus size: 13
132480 TTTTTCTATA
132490 TTTTCTTTTATT-T
1 TTTTCTTTT-TTCT
*
132503 TTTTCCTTTTTCTT
1 TTTTCTTTTTTC-T
132517 TTTTCTTTTTTCT
1 TTTTCTTTTTTCT
* *
132530 TTCTCTCTTTTCT
1 TTTTCTTTTTTCT
*
132543 CTCTTCTTTTTT
1 -TTTTCTTTTTT
132555 GCTGAACTTC
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
12 2 0.05
13 20 0.48
14 20 0.48
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTTCTTTTTTCT
Found at i:132512 original size:7 final size:7
Alignment explanation
Indices: 132479--132554 Score: 66
Period size: 7 Copynumber: 10.9 Consensus size: 7
132469 GTTTTTTTAT
132479 TTTTTTC
1 TTTTTTC
132486 TATATTTTC
1 T-T-TTTTC
*
132495 TTTTAT-
1 TTTTTTC
132501 TTTTTTC
1 TTTTTTC
*
132508 CTTTTTC
1 TTTTTTC
132515 TTTTTTC
1 TTTTTTC
132522 TTTTTTC
1 TTTTTTC
*
132529 -TTTCTC
1 TTTTTTC
*
132535 TCTTTTC
1 TTTTTTC
* *
132542 TCTCTTC
1 TTTTTTC
132549 TTTTTT
1 TTTTTT
132555 GCTGAACTTC
Statistics
Matches: 55, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
6 10 0.18
7 37 0.67
8 2 0.04
9 6 0.11
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.78
Consensus pattern (7 bp):
TTTTTTC
Found at i:132531 original size:20 final size:20
Alignment explanation
Indices: 132490--132553 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
132480 TTTTTCTATA
*
132490 TTTTCTTTTATT-TTTTTCCT
1 TTTTCTTTT-TTCTTTTTTCT
132510 TTTTCTTTTTTCTTTTTTCT
1 TTTTCTTTTTTCTTTTTTCT
* * * *
132530 TTCTCTCTTTTCTCTCTTCT
1 TTTTCTTTTTTCTTTTTTCT
132550 TTTT
1 TTTT
132554 TGCTGAACTT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
19 2 0.05
20 35 0.95
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (20 bp):
TTTTCTTTTTTCTTTTTTCT
Found at i:133587 original size:168 final size:167
Alignment explanation
Indices: 133241--133599 Score: 386
Period size: 168 Copynumber: 2.1 Consensus size: 167
133231 ATATGAAATA
* * * * **
133241 AATGATAATTTTTGATGACTTTT-AAAATTAAAAACTAAAAAAAATCCCCTTAAAAAATTCACGG
1 AATGATAATATTTGATAAATTTTGAAAATTAAAAACCAAAAAAAATCCCCCGAAAAAATTCACGG
* * * *
133305 AGTAGAAAAACTTCGTATTTCAGAAAAAAAGGAATTTTAAGGAAAAAATTCAAAAACTAATCAAA
66 AGGAGAAAAACTTCGTATTTCAGAAAAAAAGGAACTTCAAGAAAAAAATTCAAAAACTAATCAAA
** * *
133370 ATAAAAGAATTTTTGAAAACTGATTTTATATGAATTC
131 ATAAAAGAATTTTCCAAAACTGATTTGATAGGAATTC
* * * *
133407 AATAACAATATTTGATAAATTTTGAAAATTAAAAACCAAGAAAAATCCCTCCGAAAAAATTTACG
1 AATGATAATATTTGATAAATTTTGAAAATTAAAAACCAAAAAAAATCCC-CCGAAAAAATTCACG
* * * *
133472 GAGGAG-AAAAC-TCTGTTTTTTTAGAAAAATAA-GAACTTCAAGAAAAAAATTCAAAAATTCAT
65 GAGGAGAAAAACTTC-G-TATTTCAGAAAAA-AAGGAACTTCAAGAAAAAAATTCAAAAACTAAT
* * * * *
133534 GACAATGAAAGAATTTTCCAAAACTGATTTGATGGGGATTC
127 CAAAATAAAAGAATTTTCCAAAACTGATTTGATAGGAATTC
*
133575 ATTGATAATATTTGA-AGAATTTTGA
1 AATGATAATATTTGATA-AATTTTGA
133600 TGTTTGAAAT
Statistics
Matches: 157, Mismatches: 30, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
166 20 0.13
167 30 0.19
168 105 0.67
169 2 0.01
ACGTcount: A:0.48, C:0.10, G:0.12, T:0.30
Consensus pattern (167 bp):
AATGATAATATTTGATAAATTTTGAAAATTAAAAACCAAAAAAAATCCCCCGAAAAAATTCACGG
AGGAGAAAAACTTCGTATTTCAGAAAAAAAGGAACTTCAAGAAAAAAATTCAAAAACTAATCAAA
ATAAAAGAATTTTCCAAAACTGATTTGATAGGAATTC
Found at i:139008 original size:14 final size:15
Alignment explanation
Indices: 138989--139017 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
138979 TAAACAAGTC
138989 AAGTTGA-AAAACTT
1 AAGTTGACAAAACTT
139003 AAGTTGACAAAACTT
1 AAGTTGACAAAACTT
139018 TGGGATTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.48, C:0.10, G:0.14, T:0.28
Consensus pattern (15 bp):
AAGTTGACAAAACTT
Found at i:145984 original size:9 final size:9
Alignment explanation
Indices: 145970--145995 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
145960 AGAATTTCCA
145970 CCACCTCTG
1 CCACCTCTG
145979 CCACCTCTG
1 CCACCTCTG
145988 CCACCTCT
1 CCACCTCT
145996 TACAGAGGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.58, G:0.08, T:0.23
Consensus pattern (9 bp):
CCACCTCTG
Found at i:146842 original size:15 final size:15
Alignment explanation
Indices: 146824--146867 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 15
146814 ATATATTTTT
146824 TAAAAATATAATAAC
1 TAAAAATATAATAAC
*
146839 TAAAAAT-TAATAAA
1 TAAAAATATAATAAC
*
146853 TAAAAA-ATTATAAC
1 TAAAAATATAATAAC
146867 T
1 T
146868 TTATAATAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
14 18 0.72
15 7 0.28
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.30
Consensus pattern (15 bp):
TAAAAATATAATAAC
Found at i:146849 original size:14 final size:14
Alignment explanation
Indices: 146824--146867 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 14
146814 ATATATTTTT
146824 TAAAAATATAATAAC
1 TAAAAAT-TAATAAC
*
146839 TAAAAATTAATAAA
1 TAAAAATTAATAAC
146853 TAAAAAATT-ATAAC
1 T-AAAAATTAATAAC
146867 T
1 T
146868 TTATAATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
14 12 0.46
15 14 0.54
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.30
Consensus pattern (14 bp):
TAAAAATTAATAAC
Found at i:147042 original size:23 final size:24
Alignment explanation
Indices: 147016--147064 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 24
147006 AAAAAAAAAA
*
147016 ATCATATTTAACAAAAATTT-ATT
1 ATCATAATTAACAAAAATTTGATT
**
147039 ATCATAATTAATTAAAATTTGATT
1 ATCATAATTAACAAAAATTTGATT
147063 AT
1 AT
147065 AAAAAGTCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 17 0.77
24 5 0.23
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (24 bp):
ATCATAATTAACAAAAATTTGATT
Found at i:147140 original size:16 final size:17
Alignment explanation
Indices: 147118--147155 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
147108 TAATCACTTA
*
147118 ATATTTATTAGTATAAT
1 ATATTTATTAATATAAT
147135 -TATTTATTAATATAAT
1 ATATTTATTAATATAAT
147151 ATATT
1 ATATT
147156 AAAATTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (17 bp):
ATATTTATTAATATAAT
Found at i:151876 original size:68 final size:68
Alignment explanation
Indices: 151763--151899 Score: 206
Period size: 68 Copynumber: 2.0 Consensus size: 68
151753 ACAACCAATC
* * * *
151763 ACATATCCCAAAATCAAATGGGTTACTTTAAACGATACCCAAACTAGAATAAGGTTACTCTAAAC
1 ACATATCCCAAAATCAAATGGGTTACATTAAACGACACCCAAACTAAAACAAGGTTACTCTAAAC
151828 CCT
66 CCT
151831 ACAT-TCCCAAAAATCAAATGGGTTA-ATTAGAACGACACCCAAACTAAAACAAGGTTACTCTAA
1 ACATATCCC-AAAATCAAATGGGTTACATTA-AACGACACCCAAACTAAAACAAGGTTACTCTAA
151894 ACCCT
64 ACCCT
151899 A
1 A
151900 AACTAAAAAA
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
67 7 0.11
68 56 0.89
ACGTcount: A:0.43, C:0.24, G:0.10, T:0.23
Consensus pattern (68 bp):
ACATATCCCAAAATCAAATGGGTTACATTAAACGACACCCAAACTAAAACAAGGTTACTCTAAAC
CCT
Found at i:152143 original size:74 final size:74
Alignment explanation
Indices: 152053--152224 Score: 258
Period size: 74 Copynumber: 2.3 Consensus size: 74
152043 GGACATGAAA
* *
152053 CAAACGTGAGTTAAAGAGATGGATTGCGTGGCCTCTGATCTTGAAAACCTCCA-CGAAATGGTAA
1 CAAACCTGAGTTAAAGAGATGGATTGCGTGGCCTCTGATCCTGAAAA-CTCCAGCGAAATGGTAA
*
152117 TACAGGGAAG
65 TACAAGGAAG
* *
152127 CAAACCTGAGTTAAAGAGATGGATTGCGTGGCCTCTGATCCTGAAAACTTCAGCGGAATGGTAAT
1 CAAACCTGAGTTAAAGAGATGGATTGCGTGGCCTCTGATCCTGAAAACTCCAGCGAAATGGTAAT
*
152192 GCAAGGAAG
66 ACAAGGAAG
*
152201 CAAACCTGAGTT-GAGAGATGGATT
1 CAAACCTGAGTTAAAGAGATGGATT
152225 TGCTTTACGA
Statistics
Matches: 90, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
73 15 0.17
74 75 0.83
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (74 bp):
CAAACCTGAGTTAAAGAGATGGATTGCGTGGCCTCTGATCCTGAAAACTCCAGCGAAATGGTAAT
ACAAGGAAG
Found at i:152553 original size:16 final size:17
Alignment explanation
Indices: 152500--152561 Score: 90
Period size: 17 Copynumber: 3.6 Consensus size: 17
152490 TTTATATTTT
152500 AATAAATTTTTAATATAA
1 AATAAA-TTTTAATATAA
152518 AATAAATTTTAATATAA
1 AATAAATTTTAATATAA
*
152535 AATAAATTTT-ATTTAA
1 AATAAATTTTAATATAA
*
152551 AATAAAATTTA
1 AATAAATTTTA
152562 TTTGAATATA
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
16 14 0.34
17 21 0.51
18 6 0.15
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AATAAATTTTAATATAA
Found at i:152572 original size:17 final size:16
Alignment explanation
Indices: 152515--152564 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
152505 ATTTTTAATA
* *
152515 TAAAATAAATTTTAATA
1 TAAAATAAAATTT-ATT
*
152532 TAAAATAAATTTTATT
1 TAAAATAAAATTTATT
152548 TAAAATAAAATTTATT
1 TAAAATAAAATTTATT
152564 T
1 T
152565 GAATATAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
16 18 0.58
17 13 0.42
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
TAAAATAAAATTTATT
Found at i:152725 original size:18 final size:18
Alignment explanation
Indices: 152698--152740 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
152688 TTTTATTTAT
*
152698 TAAATTTTTAATATAAAA
1 TAAATTTTTTATATAAAA
*
152716 T-AATTTTTTATTTAAAA
1 TAAATTTTTTATATAAAA
152733 TAAATTTT
1 TAAATTTT
152741 ATTTTAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TAAATTTTTTATATAAAA
Found at i:152742 original size:16 final size:17
Alignment explanation
Indices: 152711--152754 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
152701 ATTTTTAATA
*
152711 TAAAATAATTTTTTATT
1 TAAAATAATATTTTATT
152728 TAAAATAA-ATTTTATTT
1 TAAAATAATATTTTA-TT
*
152745 TAATATAATA
1 TAAAATAATA
152755 AAAATATAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 5 0.22
17 17 0.74
18 1 0.04
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TAAAATAATATTTTATT
Found at i:152746 original size:17 final size:18
Alignment explanation
Indices: 152698--152752 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 18
152688 TTTTATTTAT
*
152698 TAAATTTT-TAATATAAAA
1 TAAATTTTAT-ATTTAAAA
*
152716 T-AATTTTTTATTTAAAA
1 TAAATTTTATATTTAAAA
*
152733 TAAATTTTAT-TTTAATA
1 TAAATTTTATATTTAAAA
152750 TAA
1 TAA
152753 TAAAAATATA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
17 23 0.72
18 9 0.28
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TAAATTTTATATTTAAAA
Found at i:152806 original size:180 final size:178
Alignment explanation
Indices: 152520--152891 Score: 539
Period size: 180 Copynumber: 2.1 Consensus size: 178
152510 TAATATAAAA
152520 TAAATTTTAATATAAAATAAATTTTATTTAAAATAAAATTTATTTGAATATAATAAAAATATAAG
1 TAAATTTTAATATAAAATAAATTTTATTTAAAATAAAATTTATTTGAATATAATAAAAATATAAG
* *
152585 TAATTATTTAAAAAATAATTCAAAAATATTTTAACATTTTAACCACAAAATATGTATAATAAACA
66 TAATTATTTAAAAAATAATTCAAAAATATTTTAACATTTTAACCACAAAATATATACAATAAACA
* * *
152650 AGTCTTTATAGTATAAATTAA-AAGTTAATTTATTACTTTTTTATTTAT
131 AATCTTTATAATATAAA-TAACAAGTTAATTTATTACTTTTCTATTTAT
* * *
152698 TAAATTTTTAATATAAAATAATTTTTTATTTAAAATAAATTTTATTTTAATATAATAAAAATATA
1 TAAA-TTTTAATATAAAATAA-ATTTTATTTAAAATAAAATTTATTTGAATATAATAAAAATATA
* * * * * * * * *
152763 AGTATTTATTTAAAAAATAATTCATAACTTTTTTAATATTTTAACTACAAAATATATGCGATAAG
64 AGTAATTATTTAAAAAATAATTCAAAAATATTTTAACATTTTAACCACAAAATATATACAATAAA
* *
152828 CAAATCTTTATAATATAAATAACAATTTGATTTATTACTTTTCTATTTAT
129 CAAATCTTTATAATATAAATAACAAGTTAATTTATTACTTTTCTATTTAT
152878 TAAATTTTAATATA
1 TAAATTTTAATATA
152892 TTTGTTATTA
Statistics
Matches: 172, Mismatches: 19, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
178 4 0.02
179 29 0.17
180 139 0.81
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (178 bp):
TAAATTTTAATATAAAATAAATTTTATTTAAAATAAAATTTATTTGAATATAATAAAAATATAAG
TAATTATTTAAAAAATAATTCAAAAATATTTTAACATTTTAACCACAAAATATATACAATAAACA
AATCTTTATAATATAAATAACAAGTTAATTTATTACTTTTCTATTTAT
Done.