Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2130
Parameters: 2 7 7 80 10 50 1000
Length:  61634

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--54
1
54.0
1
92
0
90
0
3
0
96
0.23
737--1402
166
4.0
162
78
7
612
49
9
11
30
1.70
734--1402
332
2.0
327
82
6
798
49
8
11
30
1.70
2347--3148
85
9.5
84
79
5
724
47
11
21
19
1.81
2324--3769
43
34.2
42
68
9
460
46
11
22
19
1.82
2318--3139
255
3.2
252
79
6
802
47
11
21
19
1.81
3171--3737
168
3.4
167
84
4
662
45
10
22
20
1.82
3171--3769
252
2.4
253
83
3
778
45
11
22
20
1.82
3171--3769
84
7.1
82
81
6
596
45
11
22
20
1.82
3856--3960
43
2.4
43
83
0
120
49
19
15
16
1.80
3942--4099
87
1.8
85
86
2
226
51
14
17
16
1.76
4647--4944
92
3.2
92
89
0
416
34
14
22
28
1.94
5626--5664
16
2.4
16
86
0
60
0
5
7
87
0.68
9035--9265
58
4.0
58
90
0
345
29
20
22
27
1.99
9068--9265
29
6.8
29
66
13
111
28
21
23
26
1.99
10052--10124
28
2.6
28
78
10
85
15
19
5
60
1.54
14912--14953
20
2.1
20
86
0
57
33
16
9
40
1.81
15948--15973
13
2.0
13
100
0
52
30
15
15
38
1.88
18350--18396
21
2.3
21
76
23
55
42
4
19
34
1.70
18517--18555
13
3.0
13
96
0
69
35
15
17
30
1.91
18541--18619
20
3.7
20
78
15
77
44
15
15
25
1.85
20634--20664
15
2.1
15
93
0
53
12
22
16
48
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22468--22512
21
2.1
21
84
8
56
22
20
4
53
1.63
24731--24756
13
2.0
13
100
0
52
30
15
15
38
1.88
25746--25790
21
2.1
21
91
0
72
33
17
17
31
1.94
25840--25896
20
2.8
20
86
0
78
29
15
10
43
1.80
25948--25989
21
2.0
21
86
9
59
33
14
21
30
1.93
26090--26709
164
3.8
166
78
10
602
50
8
11
29
1.68
28602--28632
14
2.2
14
94
0
53
22
38
0
38
1.54
34532--34572
21
2.0
20
90
4
64
36
9
7
46
1.65
34612--34677
34
1.9
34
84
6
89
42
16
12
28
1.84
37212--37368
70
2.2
70
94
2
271
33
23
7
35
1.83
38301--38339
19
2.1
19
95
0
69
82
0
17
0
0.68
38303--38342
9
4.3
9
90
6
62
85
0
15
0
0.61
39565--39626
21
3.0
21
83
11
83
19
12
3
64
1.41
40091--40118
3
9.3
3
100
0
56
32
32
0
35
1.58
42038--42273
92
2.6
92
91
0
375
25
25
13
35
1.93
42678--42788
47
2.4
46
86
4
161
18
19
14
46
1.83
42746--43063
80
4.0
81
73
10
301
22
21
13
42
1.88
43011--43095
35
2.4
35
86
5
109
23
22
9
44
1.81
46130--46162
16
2.0
17
94
5
59
24
0
6
69
1.10
46463--46509
9
4.8
10
78
21
55
80
0
19
0
0.70
46467--46509
10
4.6
9
81
18
52
81
0
18
0
0.69
46461--46508
18
2.6
19
83
12
64
79
0
20
0
0.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47799--48082
144
2.0
142
84
4
365
25
19
20
35
1.95
52503--52778
141
2.0
137
84
7
358
44
11
9
34
1.74
53677--53719
22
2.0
21
90
4
68
2
9
4
83
0.87
54287--54952
166
4.0
160
76
8
572
48
8
12
30
1.70
54284--54952
332
2.0
327
82
7
791
48
8
12
30
1.70
55869--56699
85
9.8
84
79
4
724
46
11
22
19
1.82
56382--57288
43
21.5
42
68
15
346
46
10
22
20
1.81
56616--57070
125
3.6
122
70
16
324
46
10
23
20
1.81
56512--56899
210
1.9
209
85
3
548
46
9
22
20
1.80
56722--57288
168
3.4
167
84
4
662
45
10
22
20
1.82
56205--57235
546
1.9
548
83
4
1364
46
11
22
20
1.81
56722--57320
252
2.4
253
83
2
747
45
11
22
20
1.82
56722--57320
84
7.1
82
81
6
596
45
11
22
20
1.82
57449--57650
85
2.4
87
81
7
218
50
14
17
17
1.79
61240--61395
28
5.6
27
65
15
75
27
21
23
27
1.99
61207--61417
112
1.9
114
89
5
331
29
21
22
26
1.99
61207--61417
56
3.7
57
86
8
297
29
21
22
26
1.99

Tables:   1

The End!