genome.fa.s2131.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2131
Parameters: 2 7 7 80 10 50 1000
Length:  76366

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43--81	20	2.1	19	85	9	53	23	17	10	48	1.78
1317--1531	98	2.2	97	84	2	286	30	23	12	34	1.91
1339--1569	98	2.4	98	81	5	261	29	23	11	35	1.90
6533--6563	10	3.1	10	95	0	53	38	6	0	54	1.26
7686--7711	13	2.0	13	100	0	52	30	15	15	38	1.88
7771--7843	20	3.6	20	81	3	101	31	17	13	36	1.89
7750--7826	21	3.7	21	77	6	86	28	16	11	42	1.84
7750--7843	41	2.3	41	94	3	163	29	18	12	39	1.88
8390--8485	48	2.0	48	100	0	192	25	29	8	37	1.85
10326--10364	13	3.0	13	96	0	69	35	15	17	30	1.91
12443--12473	15	2.1	15	93	0	53	12	22	16	48	1.80
16600--16676	21	3.8	19	78	11	82	28	15	11	44	1.82
16620--16713	20	4.7	20	78	5	100	29	14	14	40	1.87
16600--16693	41	2.3	41	92	3	154	29	17	12	40	1.86
19612--19994	155	2.5	156	76	5	348	24	14	20	40	1.90
20026--20546	155	3.4	155	86	3	649	22	16	21	40	1.91
20026--20601	311	1.9	309	81	6	700	22	15	20	40	1.90
20178--20601	157	2.7	156	82	5	414	22	16	20	40	1.90
27629--27798	52	3.3	51	76	13	152	37	15	22	24	1.93
27838--28141	52	5.9	51	70	7	134	36	15	22	25	1.94
28201--28739	32	16.7	33	80	6	470	20	16	31	31	1.94
28209--28739	65	8.2	65	77	9	466	20	15	31	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29742--29798	19	2.9	19	92	5	96	31	17	17	33	1.93
30372--30687	52	6.1	52	85	3	350	25	24	14	35	1.94
30390--30677	155	1.9	156	85	3	402	26	24	15	34	1.95
34042--34086	21	2.1	21	84	8	56	22	20	4	53	1.63
34678--34710	9	3.7	9	95	0	57	18	33	3	45	1.65
36310--36335	13	2.0	13	100	0	52	30	15	15	38	1.88
39342--39382	21	2.0	21	85	9	57	39	12	9	39	1.76
39422--39492	20	3.6	19	77	7	70	40	16	12	29	1.86
39462--39598	53	2.6	53	92	1	229	38	16	17	27	1.91
39562--39598	19	2.0	19	89	5	58	48	13	10	27	1.75
39622--39652	10	3.1	10	90	0	53	22	29	6	41	1.78
41933--41967	17	2.1	17	100	0	70	17	5	17	60	1.55
43933--43984	19	2.7	19	93	0	86	46	11	11	30	1.76
43883--44036	70	2.2	71	81	8	172	43	14	12	29	1.82
43950--44089	50	2.8	50	86	3	192	43	14	12	30	1.81
46285--46362	41	1.9	41	97	0	147	28	24	11	35	1.90
52470--52510	13	3.2	13	89	0	64	43	14	12	29	1.82
52548--52605	13	4.0	13	74	23	53	34	15	15	34	1.89
52562--52666	19	5.7	19	75	17	105	35	17	13	34	1.88
52549--52624	32	2.4	32	95	0	134	35	17	14	32	1.90
60039--60201	79	2.1	79	90	0	254	25	24	14	35	1.94
60125--60304	51	3.6	49	79	8	184	29	23	12	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60056--60380	180	1.8	178	86	4	474	28	24	13	34	1.93
60227--60443	79	2.7	80	80	4	242	29	23	13	32	1.94
60386--60500	51	2.3	51	80	6	126	30	23	11	34	1.90
63294--63348	22	2.5	22	100	0	110	61	9	10	18	1.54
64252--64326	20	3.8	20	78	3	71	40	13	13	33	1.83
64249--64326	40	2.0	39	84	2	102	39	14	12	33	1.84
64802--66070	29	44.2	29	88	4	1821	21	17	32	28	1.96
64802--66073	57	22.2	57	89	3	1851	21	17	32	28	1.96
67297--67359	1	63.0	1	77	0	63	0	1	9	88	0.57
67297--67359	13	4.8	13	81	9	74	0	1	9	88	0.57
67297--67358	23	2.7	23	90	7	99	0	1	9	88	0.58
75769--75800	16	2.0	16	100	0	64	81	0	6	12	0.87
75813--75869	21	2.7	21	97	0	105	33	10	19	36	1.86
75925--75992	19	3.9	19	78	21	85	35	11	14	38	1.83
75946--75970	13	1.9	13	100	0	50	36	16	16	32	1.90
75927--75989	32	2.0	32	96	0	117	34	12	15	36	1.86
76032--76057	13	2.0	13	100	0	52	30	15	15	38	1.88
76012--76078	33	2.0	33	88	0	98	25	14	16	43	1.86

Tables:   1

The End!