Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2134
Parameters: 2 7 7 80 10 50 1000
Length:  72709

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
679--782
39
2.6
39
89
3
154
41
1
47
9
1.47
712--773
21
3.1
20
77
11
65
41
0
45
12
1.42
1374--1403
14
2.1
14
93
0
51
53
0
43
3
1.17
9513--9588
12
6.9
11
75
15
52
39
2
48
9
1.49
9512--9597
24
3.8
24
72
17
85
41
2
45
10
1.51
9503--9621
42
2.8
42
92
0
193
42
2
46
8
1.47
20746--20864
42
2.8
42
90
0
184
43
2
45
8
1.47
30125--30159
12
2.9
12
84
16
54
11
48
0
40
1.39
32070--32130
29
2.1
29
84
6
79
39
8
9
42
1.68
34665--34740
12
6.9
11
75
15
52
39
2
48
9
1.49
34655--34773
42
2.8
42
93
0
202
42
1
46
9
1.46
34730--34779
18
2.8
18
81
6
57
44
2
46
8
1.44
47215--47273
24
2.5
24
88
0
82
10
49
1
38
1.47
47228--47266
12
3.2
12
82
13
53
10
51
0
38
1.36
50502--50583
28
2.9
29
82
7
107
59
7
20
12
1.56
53139--53214
12
6.9
11
75
15
52
39
2
48
9
1.49
53138--53223
24
3.8
24
72
17
85
41
2
45
10
1.51
53129--53247
42
2.8
42
92
0
193
42
2
46
8
1.47
60435--60754
52
6.0
52
70
15
170
31
13
27
26
1.94
60809--60878
32
2.2
32
84
2
88
20
15
32
31
1.94
60825--60973
32
4.7
33
78
5
137
17
18
32
32
1.94
60959--61029
32
2.2
32
90
2
108
35
11
25
28
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60825--61004
95
1.9
95
82
4
229
21
16
30
31
1.95
61051--61322
29
9.1
28
76
13
208
23
16
29
31
1.96
61051--61404
97
3.9
94
78
11
305
23
15
29
31
1.96
61053--61404
65
5.8
63
78
11
260
23
15
29
31
1.95
61054--61403
32
11.5
32
75
12
233
23
15
29
31
1.95
61300--61443
65
2.3
63
81
6
157
22
15
32
28
1.95
61233--61462
97
2.4
96
78
13
219
22
15
32
30
1.95
61395--61752
58
6.1
58
80
6
348
27
12
33
27
1.92
61389--61752
87
4.2
86
80
6
322
26
11
33
27
1.91
61395--61752
28
12.3
29
81
4
348
27
12
33
27
1.92
70048--70127
42
1.9
42
87
5
117
13
43
2
40
1.58
70076--70145
33
2.1
33
92
5
115
14
44
1
40
1.54
70081--70145
12
5.7
11
73
23
55
13
46
1
38
1.53
70084--70157
33
2.2
33
88
4
105
12
44
1
41
1.50
71440--71489
20
2.5
20
90
0
82
42
12
16
30
1.84
71452--71594
52
2.8
52
86
0
205
42
10
17
29
1.82
72144--72175
16
2.0
16
93
0
55
37
15
6
40
1.73

Tables:   1

The End!