genome.fa.s2136.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2136
Parameters: 2 7 7 80 10 50 1000
Length:  134634

Tables:   1   

This is table  1  of  1  ( 108 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1014--1072	2	29.5	2	100	0	118	50	0	0	49	1.00
1168--1830	336	2.0	333	86	5	937	43	7	6	42	1.57
2629--2683	13	3.8	13	75	25	56	36	14	16	32	1.89
2640--2702	19	3.7	18	76	24	73	33	12	17	36	1.88
2629--2710	32	2.6	32	98	0	155	34	13	17	35	1.88
2730--2783	21	2.9	19	76	18	60	42	14	9	33	1.78
2770--2794	13	1.9	13	100	0	50	32	16	16	36	1.90
8726--8783	27	2.1	27	80	0	62	31	5	12	51	1.61
13291--13387	27	3.7	27	78	6	101	23	6	19	50	1.70
14182--14212	16	1.9	16	93	0	53	29	0	0	70	0.87
15133--15236	52	1.9	52	83	11	129	52	4	4	37	1.44
15801--15853	12	4.6	12	73	17	58	69	3	0	26	1.05
15801--15875	12	6.5	11	78	17	55	68	2	0	29	1.04
15846--15958	12	9.2	12	71	19	81	60	0	0	38	1.03
15850--15951	26	3.8	26	78	13	93	57	0	0	41	1.05
17288--17487	101	2.0	101	97	0	382	36	20	12	31	1.89
19113--19160	19	2.5	19	77	12	53	62	0	35	2	1.07
19189--19272	40	2.0	41	84	8	109	34	0	4	60	1.18
19248--19308	29	2.2	28	85	5	79	27	1	3	67	1.16
22858--22908	13	4.0	13	75	14	61	41	0	0	58	0.98
22906--22961	19	2.8	21	75	22	66	57	1	1	39	1.20
22993--23330	50	6.7	50	87	1	451	32	15	21	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27708--27972	50	5.3	50	89	1	413	32	18	19	29	1.96
27708--27995	152	1.9	150	89	1	441	32	17	20	29	1.95
29424--29479	23	2.4	24	79	11	62	51	0	1	46	1.11
30306--30339	16	2.2	16	89	5	52	85	0	0	14	0.60
30506--30534	2	14.5	2	100	0	58	51	0	48	0	1.00
30742--30779	19	2.0	19	90	10	60	65	0	0	34	0.93
31298--31339	16	2.7	16	88	3	59	40	0	9	50	1.35
38705--38815	38	2.8	39	78	11	95	27	0	1	70	1.03
38741--38816	14	5.1	15	71	17	59	25	1	1	72	1.00
59271--59331	13	4.6	12	82	13	59	63	0	1	34	1.04
59271--59316	15	3.3	15	77	20	55	65	0	0	34	0.93
59271--59326	26	2.1	27	90	6	87	64	0	1	33	1.04
60824--60899	39	1.9	40	89	2	118	38	3	2	55	1.33
61352--61380	14	2.1	14	93	6	51	62	0	0	37	0.96
61383--61450	29	2.3	30	80	14	79	57	2	1	38	1.23
61937--61988	15	3.6	14	78	17	61	46	0	0	53	1.00
61937--62000	13	4.7	13	72	24	51	43	0	0	56	0.99
62521--62595	19	3.5	20	73	12	53	42	6	1	49	1.37
62840--62988	82	1.8	80	85	5	210	22	6	10	59	1.54
63484--63555	29	2.5	29	81	4	83	40	5	6	47	1.54
63748--63773	2	13.0	2	100	0	52	50	0	0	50	1.00
66185--66239	11	4.9	11	80	12	58	74	0	23	1	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66206--66241	17	2.1	17	89	0	54	83	0	16	0	0.65
68872--68902	2	15.5	2	93	0	53	51	0	0	48	1.00
69833--69876	15	2.9	15	80	10	54	65	0	0	34	0.93
70158--70203	25	1.9	23	86	8	65	60	0	0	39	0.97
70166--70262	35	2.8	36	81	4	110	54	3	2	40	1.28
70345--70424	24	3.3	24	79	11	83	50	2	1	46	1.23
70361--70426	24	2.7	25	86	6	91	51	1	1	45	1.19
71379--71412	16	2.1	16	88	0	50	44	11	17	26	1.83
72070--72135	16	4.1	16	80	3	71	46	12	12	28	1.77
73112--73145	16	2.1	16	89	10	52	0	29	0	70	0.87
74941--75011	23	3.1	24	84	11	71	33	0	1	64	1.02
74941--75000	12	5.0	12	84	13	79	33	0	1	65	1.03
74967--75001	11	3.1	11	92	8	61	28	0	0	71	0.86
74965--75011	21	2.1	23	88	7	71	31	0	0	68	0.90
75009--75045	17	2.2	17	90	0	56	51	2	0	45	1.15
75093--75142	26	2.0	24	88	7	73	48	0	8	44	1.32
75121--75153	14	2.3	15	89	5	50	54	0	0	45	0.99
75422--75482	29	2.1	29	87	6	88	67	9	1	21	1.29
76284--76311	2	14.0	2	100	0	56	50	0	0	50	1.00
83517--83597	37	2.2	37	90	0	126	30	23	19	25	1.98
83529--83612	37	2.3	37	87	4	116	38	26	14	21	1.91
86216--86261	20	2.3	20	84	0	56	13	47	4	34	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88653--88698	20	2.3	20	84	0	56	13	47	4	34	1.62
91106--91133	2	14.0	2	100	0	56	50	0	0	50	1.00
92252--92317	35	1.9	33	87	6	96	74	0	4	21	1.00
92264--92311	14	3.5	14	78	13	55	75	0	4	20	0.97
92953--93002	22	2.3	22	82	0	64	42	20	24	14	1.88
94394--95171	163	4.8	162	86	3	980	29	15	14	41	1.86
96954--96996	2	21.5	2	100	0	86	51	0	0	48	1.00
97369--97691	167	1.9	168	87	1	479	26	13	13	46	1.80
98421--98455	13	2.8	12	87	12	52	8	0	2	88	0.61
99810--99866	25	2.5	22	86	13	73	21	12	21	45	1.83
99821--99870	25	2.0	25	100	0	100	24	12	16	48	1.79
102293--102347	19	3.0	19	76	10	53	56	0	0	43	0.99
102379--102430	17	3.0	17	77	2	59	40	0	0	59	0.97
102368--102460	37	2.5	37	80	16	104	44	1	1	53	1.14
103768--103818	24	2.0	26	85	7	70	33	1	11	52	1.49
106187--106217	2	15.5	2	100	0	62	48	0	0	51	1.00
109642--109692	27	1.9	26	92	4	84	29	17	31	21	1.96
111992--112063	20	3.6	19	75	7	72	40	9	13	36	1.78
111989--112066	40	2.0	39	89	2	120	39	11	12	35	1.80
112889--112969	16	5.1	16	79	5	74	9	12	32	45	1.75
112889--112970	32	2.5	31	75	7	83	9	13	31	45	1.76
112973--113057	44	1.9	45	85	2	118	21	12	25	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114403--114453	15	3.2	15	70	24	50	3	29	3	62	1.31
114389--114453	33	2.0	33	96	0	121	6	29	3	61	1.35
114389--114441	18	3.1	18	67	25	51	7	28	1	62	1.33
115976--116195	114	1.9	112	89	7	343	38	16	9	36	1.80
117168--117223	2	28.5	2	77	10	53	51	5	1	41	1.35
118378--118484	42	2.6	40	77	5	97	29	17	19	32	1.95
120215--120282	33	2.1	33	88	0	100	42	1	10	45	1.47
122114--122154	2	20.5	2	100	0	82	0	48	0	51	1.00
123384--123469	27	3.1	28	73	11	79	43	3	2	51	1.31
123728--123753	3	8.7	3	100	0	52	65	0	0	34	0.93
124179--124218	5	8.0	5	88	0	62	37	2	0	60	1.11
125453--125482	2	15.0	2	100	0	60	50	0	0	50	1.00
125953--126025	10	7.2	10	77	11	60	41	0	0	58	0.98
125987--126023	2	19.5	2	89	10	60	48	0	0	51	1.00
126631--126659	2	14.5	2	100	0	58	51	48	0	0	1.00
128464--128489	2	13.0	2	100	0	52	50	0	0	50	1.00
128844--128877	16	2.0	18	88	11	54	47	0	0	52	1.00
129552--129593	22	1.9	22	85	0	57	35	9	0	54	1.33
129947--129983	2	18.5	2	100	0	74	48	0	51	0	1.00
132443--132492	26	2.0	25	88	4	73	28	2	0	70	0.99

Tables:   1

The End!