Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2137
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91570
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Found at i:3614 original size:13 final size:13
Alignment explanation
Indices: 3596--3621 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3586 CATTTTGGGA
3596 TGTATCGATACAT
1 TGTATCGATACAT
3609 TGTATCGATACAT
1 TGTATCGATACAT
3622 CTTGTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3618 original size:33 final size:32
Alignment explanation
Indices: 3576--3639 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
3566 TACAAGCCAA
*
3576 TGTATCGATACATTTTGGGATGTATCGATACAT
1 TGTATCGATACATCTTGGG-TGTATCGATACAT
*
3609 TGTATCGATACATCTTGTGTGTATCGATACA
1 TGTATCGATACATCTTGGGTGTATCGATACA
3640 AACAGTTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (32 bp):
TGTATCGATACATCTTGGGTGTATCGATACAT
Found at i:3739 original size:13 final size:13
Alignment explanation
Indices: 3721--3745 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3711 ACATTTGGTC
3721 ATGTATCGATACA
1 ATGTATCGATACA
3734 ATGTATCGATAC
1 ATGTATCGATAC
3746 TGTGCAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:4465 original size:19 final size:20
Alignment explanation
Indices: 4443--4484 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
4433 AAAATTACAA
* *
4443 AAAGTTCCTTAAA-ATGTTT
1 AAAGTGCCTAAAACATGTTT
4462 AAAGTGCCTAAAACATGTTT
1 AAAGTGCCTAAAACATGTTT
4482 AAA
1 AAA
4485 CATGCATGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.43, C:0.12, G:0.12, T:0.33
Consensus pattern (20 bp):
AAAGTGCCTAAAACATGTTT
Found at i:4720 original size:16 final size:16
Alignment explanation
Indices: 4699--4729 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
4689 AAAATCAACA
4699 CAAATATAACAAAAAT
1 CAAATATAACAAAAAT
*
4715 CAAATATACCAAAAA
1 CAAATATAACAAAAA
4730 AATTCATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.16, G:0.00, T:0.16
Consensus pattern (16 bp):
CAAATATAACAAAAAT
Found at i:6846 original size:20 final size:20
Alignment explanation
Indices: 6818--6868 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
6808 TATCCAGATA
*
6818 TATCAATACATTGAAAAATG
1 TATCGATACATTGAAAAATG
****
6838 TATCGATACATTTTTCAATG
1 TATCGATACATTGAAAAATG
6858 TATCGATACAT
1 TATCGATACAT
6869 GTATGAATAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.37
Consensus pattern (20 bp):
TATCGATACATTGAAAAATG
Found at i:6905 original size:20 final size:20
Alignment explanation
Indices: 6834--6911 Score: 95
Period size: 20 Copynumber: 3.9 Consensus size: 20
6824 TACATTGAAA
*
6834 AATGTATCGATACATTTTTC
1 AATGTATCGATACATTCTTC
* *
6854 AATGTATCGATACATGT-ATG
1 AATGTATCGATACAT-TCTTC
* *
6874 AATATATAGATACATTCTTC
1 AATGTATCGATACATTCTTC
6894 AATGTATCGATACATTCT
1 AATGTATCGATACATTCT
6912 ATCTTTTGAC
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
19 1 0.02
20 46 0.96
21 1 0.02
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.40
Consensus pattern (20 bp):
AATGTATCGATACATTCTTC
Found at i:10510 original size:79 final size:79
Alignment explanation
Indices: 10370--10516 Score: 185
Period size: 78 Copynumber: 1.9 Consensus size: 79
10360 GGGCTGGAGT
*
10370 ATCCCTTGATTATGAAAAATCGGTGTTCTAGAAATAAAATCGGGGTGGAGTATCCTCTCGAAAAT
1 ATCCCTTGATTATAAAAAATCGGTGTTCTAGAAATAAAATCGGGGTGGAGTATCCTCTCGAAAAT
10435 AACAGGGTTAGAGC
66 AACAGGGTTAGAGC
* * *
10449 ATCCC-TGATTATAAAAAATCGAG-GTT-TTGAAAATGAAATCGAGGTTGGAGTATCC-CTTCGA
1 ATCCCTTGATTATAAAAAATCG-GTGTTCTAG-AAATAAAATCG-GGGTGGAGTATCCTC-TCGA
*
10510 AGATAAC
62 AAATAAC
10517 GAGGTTGGAG
Statistics
Matches: 59, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
77 2 0.03
78 29 0.49
79 28 0.47
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.27
Consensus pattern (79 bp):
ATCCCTTGATTATAAAAAATCGGTGTTCTAGAAATAAAATCGGGGTGGAGTATCCTCTCGAAAAT
AACAGGGTTAGAGC
Found at i:10731 original size:79 final size:78
Alignment explanation
Indices: 10364--10741 Score: 341
Period size: 79 Copynumber: 4.8 Consensus size: 78
10354 ACAACGGGGC
* * * * *
10364 TGGAGTATCCCTTGATTATGAAAAATCGGTGTTCTAGAAATAAAATCGGGGTGGAGTAT-CCTCT
1 TGGAGTATCCC-CGATTATGAAAAATCGATGTTTTAGAAATAAAACCGGGTTGGAGTATCCCT-T
10428 CGAAAATAACAGGGT
64 CGAAAATAACAGGGT
* * * * * * *
10443 TAGAGCATCCCTGATTATAAAAAATCGAGGTTTT-GAAAATGAAATCGAGGTTGGAGTATCCCTT
1 TGGAGTATCCCCGATTATGAAAAATCGATGTTTTAG-AAATAAAACCG-GGTTGGAGTATCCCTT
*
10507 CGAAGATAAC-GAGGT
64 CGAAAATAACAG-GGT
* * * * ** * * **
10522 TGGAGTATCCCCGATTGTGGAAAATCGAAGCTTTAGAAATAAGGCTGGGGTTGAAGTATCCCCGC
1 TGGAGTATCCCCGATTATGAAAAATCGATGTTTTAGAAATAAAAC-CGGGTTGGAGTATCCCTTC
*
10587 CAAAATAACAGGGT
65 GAAAATAACAGGGT
* * * * * *
10601 TGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAGCCGGGGTTGGAGTATCCCTTT
1 TGGAGTATCCCCGATTATGAAAAATCGATGTTTTAGAAATAAAACC-GGGTTGGAGTATCCCTTC
*
10666 GAAAATAA-TGGGAT
65 GAAAATAACAGGG-T
* * *
10680 TGGAGTATCCCCGATTATGAAAAATTGATGTTTTGGAAATAAAACCAGGGTTAGAGTATCCC
1 TGGAGTATCCCCGATTATGAAAAATCGATGTTTTAGAAATAAAACC-GGGTTGGAGTATCCC
10742 CGAGATGAAA
Statistics
Matches: 240, Mismatches: 50, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
77 1 0.00
78 33 0.14
79 200 0.83
80 6 0.03
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (78 bp):
TGGAGTATCCCCGATTATGAAAAATCGATGTTTTAGAAATAAAACCGGGTTGGAGTATCCCTTCG
AAAATAACAGGGT
Found at i:10731 original size:158 final size:157
Alignment explanation
Indices: 10364--10743 Score: 381
Period size: 158 Copynumber: 2.4 Consensus size: 157
10354 ACAACGGGGC
* * * * * * * *
10364 TGGAGTATCCCTTGATTATGAAAAATCGGTGTTCTAGAAATAAAATCGGGGTGGAGTATCCTCTC
1 TGGAGTATCCC-CGATTATGAAAAATCGATGTTTTAGAAATAAAACCGGGTTGAAGTATCCCCGC
* * * * *
10429 GAAAATAACAGGGTTAGAGCATCCCTGATTATAAAAAATCGAGGTTTTGAAAATGAAATCGAGGT
65 CAAAATAACAGGGTTAGAGCATCCCCGATTATAAAAAATCAAGATTTTGAAAATGAAACCGAGGT
*
10494 TGGAGTATCCCTTCGAAGATAACGAGGT
130 TGGAGTATCCCTTCGAAAATAACGAGGT
* * * * ** *
10522 TGGAGTATCCCCGATTGTGGAAAATCGAAGCTTTAGAAATAAGGCTGGGGTTGAAGTATCCCCGC
1 TGGAGTATCCCCGATTATGAAAAATCGATGTTTTAGAAATAAAAC-CGGGTTGAAGTATCCCCGC
* * * * * * *
10587 CAAAATAACAGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTT-AGAAAT-AAAGCCGGG
65 CAAAATAACAGGGTTAGAGCATCCCCGATTATAAAAAATCAAGATTTTGA-AAATGAAA-CCGAG
* *
10650 GTTGGAGTATCCCTTTGAAAATAATG-GGAT
128 GTTGGAGTATCCCTTCGAAAATAACGAGG-T
* *
10680 TGGAGTATCCCCGATTATGAAAAATTGATGTTTTGGAAATAAAACCAGGGTT-AGAGTATCCCCG
1 TGGAGTATCCCCGATTATGAAAAATCGATGTTTTAGAAATAAAACC-GGGTTGA-AGTATCCCCG
10744 AGATGAAAAA
Statistics
Matches: 177, Mismatches: 39, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
157 31 0.18
158 146 0.82
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (157 bp):
TGGAGTATCCCCGATTATGAAAAATCGATGTTTTAGAAATAAAACCGGGTTGAAGTATCCCCGCC
AAAATAACAGGGTTAGAGCATCCCCGATTATAAAAAATCAAGATTTTGAAAATGAAACCGAGGTT
GGAGTATCCCTTCGAAAATAACGAGGT
Found at i:10769 original size:50 final size:49
Alignment explanation
Indices: 10682--10803 Score: 163
Period size: 50 Copynumber: 2.4 Consensus size: 49
10672 AATGGGATTG
* ** * *
10682 GAGTATCCCCGATTATGAAAAATTGATGTTTTGGAAATAAAACCAGGGTT
1 GAGTATCCCCGA-GATGAAAAATCAATATTTTAGAAATAAAACCAGGGTT
10732 AGAGTATCCCCGAGATGAAAAATCAATATTTTAGAAATAAAACCAGGGTT
1 -GAGTATCCCCGAGATGAAAAATCAATATTTTAGAAATAAAACCAGGGTT
*
10782 GAAGTATCCCTGAGATGAAAAA
1 G-AGTATCCCCGAGATGAAAAA
10804 CCTAAAAATT
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
49 1 0.02
50 51 0.80
51 12 0.19
ACGTcount: A:0.41, C:0.13, G:0.20, T:0.25
Consensus pattern (49 bp):
GAGTATCCCCGAGATGAAAAATCAATATTTTAGAAATAAAACCAGGGTT
Found at i:13136 original size:20 final size:20
Alignment explanation
Indices: 13085--13179 Score: 129
Period size: 20 Copynumber: 4.8 Consensus size: 20
13075 AAAATGCCTG
*
13085 AATGTATCGATACATTGAA-
1 AATGTATCGATACAATGAAC
* *
13104 AATTATATTGATACAATGAAC
1 AA-TGTATCGATACAATGAAC
*
13125 AATGTATCGATACAATGCAC
1 AATGTATCGATACAATGAAC
*
13145 AATGTATCGATACAATGCAC
1 AATGTATCGATACAATGAAC
13165 AATGTATCGATACAA
1 AATGTATCGATACAA
13180 ATTGTGAAAA
Statistics
Matches: 68, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
19 2 0.03
20 64 0.94
21 2 0.03
ACGTcount: A:0.43, C:0.15, G:0.14, T:0.28
Consensus pattern (20 bp):
AATGTATCGATACAATGAAC
Found at i:24498 original size:19 final size:19
Alignment explanation
Indices: 24474--24523 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
24464 ATCAATACAA
24474 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
*
24493 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAGTGT
24512 TGTATCGATACA
1 TGTATCGATACA
24524 ATATAAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATAAGTGT
Found at i:24504 original size:32 final size:33
Alignment explanation
Indices: 24441--24504 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
24431 TTCAATGATT
24441 TGTATCGACACATAAAGTGTTATATCAATACAA
1 TGTATCGACACATAAAGTGTTATATCAATACAA
* * *
24474 TGTATCGATACAT-AAGTGTTGTATCGATACA
1 TGTATCGACACATAAAGTGTTATATCAATACA
24505 TAAGTTTTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.33
Consensus pattern (33 bp):
TGTATCGACACATAAAGTGTTATATCAATACAA
Found at i:24584 original size:13 final size:13
Alignment explanation
Indices: 24566--24590 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24556 ACTACCCAAA
24566 TGTATCGATACAT
1 TGTATCGATACAT
24579 TGTATCGATACA
1 TGTATCGATACA
24591 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:24644 original size:52 final size:50
Alignment explanation
Indices: 24581--24727 Score: 204
Period size: 52 Copynumber: 2.8 Consensus size: 50
24571 CGATACATTG
*
24581 TATCGATACACTGATCTTTGTATCGATACATGCAGGCAAATTTGCCCAGATA
1 TATCGATACACT-AT-TATGTATCGATACATGCAGGCAAATTTGCCCAGATA
* *
24633 TATCGATACACTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAGATG
1 TATCGATACACTAT--TATGTATCGATACATGCAGGCAAATTTGCCCAGATA
*
24685 TATCGATACACTATTAAATGTATCGATACATGTAGGCAAATTT
1 TATCGATACACTATT--ATGTATCGATACATGCAGGCAAATTT
24728 TCATATTTCA
Statistics
Matches: 86, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
51 2 0.02
52 84 0.98
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (50 bp):
TATCGATACACTATTATGTATCGATACATGCAGGCAAATTTGCCCAGATA
Found at i:30993 original size:5 final size:5
Alignment explanation
Indices: 30975--31012 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
30965 AGTCAAAAGT
*
30975 AAACA AAA-A AAACA AAACA CAAAAA AAACA AAACA AAA
1 AAACA AAACA AAACA AAACA -AAACA AAACA AAACA AAA
31013 AAGGTGCAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
4 4 0.14
5 21 0.72
6 4 0.14
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (5 bp):
AAACA
Found at i:30998 original size:16 final size:16
Alignment explanation
Indices: 30977--31014 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
30967 TCAAAAGTAA
30977 ACAAAAAAAACAAAAC
1 ACAAAAAAAACAAAAC
30993 ACAAAAAAAACAAAAC
1 ACAAAAAAAACAAAAC
31009 A-AAAAA
1 ACAAAAA
31015 GGTGCAAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (16 bp):
ACAAAAAAAACAAAAC
Found at i:32394 original size:31 final size:30
Alignment explanation
Indices: 32285--32781 Score: 391
Period size: 31 Copynumber: 16.1 Consensus size: 30
32275 AATTCTTCAA
*
32285 ATCTCTTCTCAAAGTCCACGACTCAGTGGC
1 ATCTCTTCTTAAAGTCCACGACTCAGTGGC
* *
32315 ATC-CTTGTCTTCAAAGTCCATGACTTAGTGGC
1 ATCTC-T-TCTT-AAAGTCCACGACTCAGTGGC
* * * *
32347 AT-TTTGTCCTAAAGTCCACAATTCAGTGGC
1 ATCTCT-TCTTAAAGTCCACGACTCAGTGGC
32377 ATCTCCTTCTTAAAGTCCACGACTCAGTGGC
1 ATCT-CTTCTTAAAGTCCACGACTCAGTGGC
* * *
32408 AATCTCTTCTCAAAGCCCACGACTTAGTGGC
1 -ATCTCTTCTTAAAGTCCACGACTCAGTGGC
* * * *
32439 AT-TTTTCCCTAAAGTCCACAATTCAGTGGC
1 ATCTCTT-CTTAAAGTCCACGACTCAGTGGC
*
32469 ATCTCCTTCTTAAAGTCCATGACTCAGTGGC
1 ATCT-CTTCTTAAAGTCCACGACTCAGTGGC
* * * *
32500 AATCTCTTCTCAAAGCCCATGACTTAGTGGC
1 -ATCTCTTCTTAAAGTCCACGACTCAGTGGC
* *
32531 AT-TTTGTCTTAAAGTCCAC-ATTTCAGTGGC
1 ATCTCT-TCTTAAAGTCCACGA-CTCAGTGGC
32561 ATCTCCTTCTTAAAGTCCACGACTCAGTGGC
1 ATCT-CTTCTTAAAGTCCACGACTCAGTGGC
* * * *
32592 AATCTCTTCTCAAAGCCCATGATTCAGTGGC
1 -ATCTCTTCTTAAAGTCCACGACTCAGTGGC
* * *
32623 AT-TTTGTCCTAAAGTCCACGACTCCGTGGC
1 ATCTCT-TCTTAAAGTCCACGACTCAGTGGC
* * *
32653 ACCTTTTTCTTCTCAAAGCCCACGACTCAGTGGC
1 A----TCTCTTCTTAAAGTCCACGACTCAGTGGC
* * * *
32687 AT-TTTGTCCTAAAAGTCCACAATTCAGTGGC
1 ATCTCT-T-CTTAAAGTCCACGACTCAGTGGC
*
32718 ATCTCTT-TCCAAAGTCCACGACTCAGTGGC
1 ATCTCTTCT-TAAAGTCCACGACTCAGTGGC
*
32748 ATTTTCTT-TTCAAAGTCCACGACTCAGTGGC
1 A-TCTCTTCTT-AAAGTCCACGACTCAGTGGC
32779 ATC
1 ATC
32782 AAAGTCCACA
Statistics
Matches: 371, Mismatches: 67, Indels: 58
0.75 0.14 0.12
Matches are distributed among these distances:
29 12 0.03
30 107 0.29
31 189 0.51
32 39 0.11
34 22 0.06
35 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (30 bp):
ATCTCTTCTTAAAGTCCACGACTCAGTGGC
Found at i:32442 original size:92 final size:92
Alignment explanation
Indices: 32285--32779 Score: 594
Period size: 92 Copynumber: 5.3 Consensus size: 92
32275 AATTCTTCAA
* *
32285 ATCT-CTTCTCAAAGTCCACGACTCAGTGGC-ATC-CTTGTCTTCAAAGTCCATGACTTAGTGGC
1 ATCTCCTTCTTAAAGTCCACGACTCAGTGGCAATCTC-T-TC-TCAAAGCCCATGACTTAGTGGC
32347 ATTTTGTCCTAAAGTCCACAATTCAGTGGC
63 ATTTTGTCCTAAAGTCCACAATTCAGTGGC
*
32377 ATCTCCTTCTTAAAGTCCACGACTCAGTGGCAATCTCTTCTCAAAGCCCACGACTTAGTGGCATT
1 ATCTCCTTCTTAAAGTCCACGACTCAGTGGCAATCTCTTCTCAAAGCCCATGACTTAGTGGCATT
32442 TT-TCCCTAAAGTCCACAATTCAGTGGC
66 TTGT-CCTAAAGTCCACAATTCAGTGGC
*
32469 ATCTCCTTCTTAAAGTCCATGACTCAGTGGCAATCTCTTCTCAAAGCCCATGACTTAGTGGCATT
1 ATCTCCTTCTTAAAGTCCACGACTCAGTGGCAATCTCTTCTCAAAGCCCATGACTTAGTGGCATT
* *
32534 TTGTCTTAAAGTCCACATTTCAGTGGC
66 TTGTCCTAAAGTCCACAATTCAGTGGC
32561 ATCTCCTTCTTAAAGTCCACGACTCAGTGGCAATCTCTTCTCAAAGCCCATGA-TTCAGTGGCAT
1 ATCTCCTTCTTAAAGTCCACGACTCAGTGGCAATCTCTTCTCAAAGCCCATGACTT-AGTGGCAT
* * *
32625 TTTGTCCTAAAGTCCACGACTCCGTGGC
65 TTTGTCCTAAAGTCCACAATTCAGTGGC
* * * * * * * * * * * *
32653 ACCTTTTTCTTCTCAAAGCCCACGACTCAGTGGCATTTTGTCCTAAAAGTCCA-CAATTCAGTGG
1 A---TCTCCTTCTTAAAGTCCACGACTCAGTGGCAATCTCTTCTCAAAGCCCATGACTT-AGTGG
* *
32717 CATCTCTT-TCC-AAAGTCCACGACTCAGTGGC
62 CAT-T-TTGTCCTAAAGTCCACAATTCAGTGGC
* *
32748 ATTTTCTT-TTCAAAGTCCACGACTCAGTGGCA
1 ATCTCCTTCTT-AAAGTCCACGACTCAGTGGCA
32780 TCAAAGTCCA
Statistics
Matches: 363, Mismatches: 27, Indels: 26
0.87 0.06 0.06
Matches are distributed among these distances:
91 4 0.01
92 249 0.69
93 28 0.08
94 5 0.01
95 71 0.20
96 4 0.01
97 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (92 bp):
ATCTCCTTCTTAAAGTCCACGACTCAGTGGCAATCTCTTCTCAAAGCCCATGACTTAGTGGCATT
TTGTCCTAAAGTCCACAATTCAGTGGC
Found at i:32780 original size:61 final size:62
Alignment explanation
Indices: 32285--32781 Score: 412
Period size: 61 Copynumber: 8.0 Consensus size: 62
32275 AATTCTTCAA
* *
32285 ATCTC-TTCTCAAAGTCCACGACTCAGTGGCATCCTTGTC-T-TCAAAGTCCATGACTTAGTGGC
1 ATCTCTTTCTCAAAGTCCACGACTCAGTGGCAT--TT-TCTTCTCAAAGTCCACGACTCAGTGGC
* * * * *
32347 AT-T-TTGTC-CTAAAGTCCACAATTCAGTGGCATCTCCTTCTTAAAGTCCACGACTCAGTGGC
1 ATCTCTT-TCTC-AAAGTCCACGACTCAGTGGCATTTTCTTCTCAAAGTCCACGACTCAGTGGC
* * * * *
32408 AATCTC-TTCTCAAAGCCCACGACTTAGTGGCA-TTT-TTCCCTAAAGTCCACAATTCAGTGGC
1 -ATCTCTTTCTCAAAGTCCACGACTCAGTGGCATTTTCTTCTC-AAAGTCCACGACTCAGTGGC
* * * * * * * *
32469 ATCTCCTTCTTAAAGTCCATGACTCAGTGGCAATCTCTTCTCAAAGCCCATGACTTAGTGGC
1 ATCTCTTTCTCAAAGTCCACGACTCAGTGGCATTTTCTTCTCAAAGTCCACGACTCAGTGGC
* * * * *
32531 AT-T-TTGTCTTAAAGTCCAC-ATTTCAGTGGCATCTCCTTCTTAAAGTCCACGACTCAGTGGC
1 ATCTCTT-TCTCAAAGTCCACGA-CTCAGTGGCATTTTCTTCTCAAAGTCCACGACTCAGTGGC
* * * * * *
32592 AATCTC-TTCTCAAAGCCCATGATTCAGTGGCATTTTGTCCT-AAAGTCCACGACTCCGTGGC
1 -ATCTCTTTCTCAAAGTCCACGACTCAGTGGCATTTTCTTCTCAAAGTCCACGACTCAGTGGC
* * * * * * * *
32653 ACCTTTTTCTTCTCAAAGCCCACGACTCAGTGGCATTTTGTCCTAAAAGTCCACAATTCAGTGGC
1 A--TCTCT-TTCTCAAAGTCCACGACTCAGTGGCATTTTCTTCTCAAAGTCCACGACTCAGTGGC
*
32718 ATCTCTTTC-CAAAGTCCACGACTCAGTGGCATTTTCTTTTCAAAGTCCACGACTCAGTGGC
1 ATCTCTTTCTCAAAGTCCACGACTCAGTGGCATTTTCTTCTCAAAGTCCACGACTCAGTGGC
32779 ATC
1 ATC
32782 AAAGTCCACA
Statistics
Matches: 348, Mismatches: 63, Indels: 49
0.76 0.14 0.11
Matches are distributed among these distances:
59 1 0.00
60 13 0.04
61 174 0.50
62 96 0.28
63 13 0.04
64 33 0.09
65 18 0.05
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (62 bp):
ATCTCTTTCTCAAAGTCCACGACTCAGTGGCATTTTCTTCTCAAAGTCCACGACTCAGTGGC
Found at i:32787 original size:23 final size:23
Alignment explanation
Indices: 32757--32804 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
32747 CATTTTCTTT
*
32757 TCAAAGTCCACGA-CTCAGTGGCA
1 TCAAAGTCCACAACCTCA-TGGCA
32780 TCAAAGTCCACAACCTCATGGCA
1 TCAAAGTCCACAACCTCATGGCA
32803 TC
1 TC
32805 TTGTTCCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 19 0.83
24 4 0.17
ACGTcount: A:0.31, C:0.33, G:0.17, T:0.19
Consensus pattern (23 bp):
TCAAAGTCCACAACCTCATGGCA
Found at i:32835 original size:57 final size:54
Alignment explanation
Indices: 32727--32836 Score: 141
Period size: 57 Copynumber: 2.0 Consensus size: 54
32717 CATCTCTTTC
* * *
32727 CAAAGTCCACGACTCAGTGGCATTTTCTTTTCAAAGTCCACGACTCAGTGGCAT
1 CAAAGTCCACAACTCAGTGGCATTTTCCTTTCAAAGTCCACAACTCAGTGGCAT
*
32781 CAAAGTCCACAACCTCA-TGGCATCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCA
1 CAAAGTCCACAA-CTCAGTGGCA--TT-TTCCTTTCAAAGTCCACAACTCAGTGGCA
32837 CCTTCTTTTC
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
54 16 0.33
55 4 0.08
56 2 0.04
57 26 0.54
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.26
Consensus pattern (54 bp):
CAAAGTCCACAACTCAGTGGCATTTTCCTTTCAAAGTCCACAACTCAGTGGCAT
Found at i:32889 original size:36 final size:34
Alignment explanation
Indices: 32798--33074 Score: 220
Period size: 31 Copynumber: 8.3 Consensus size: 34
32788 CACAACCTCA
* * * *
32798 TGGCATCTTGTTCCTTTCAAAGTCCACAACTCCG
1 TGGCACCTTTTTCCTTTTAAAGCCCACAACTCCG
*
32832 TGGCACC---TT-CTTTTCAAAGCCCACAACTCAG
1 TGGCACCTTTTTCCTTTT-AAAGCCCACAACTCCG
32863 TGGCACTCTTTTTCCCTTTTAAAGCCCACAACTCCG
1 TGGCAC-CTTTTT-CCTTTTAAAGCCCACAACTCCG
* * * *
32899 TGGCACACTTTGTTTCTTTT-AAGTCCACGAGTCCG
1 TGGCAC-CTTT-TTCCTTTTAAAGCCCACAACTCCG
* * * * *
32934 TGGCACC---TTCCTTTCAAAGTCCGCGACTCTG
1 TGGCACCTTTTTCCTTTTAAAGCCCACAACTCCG
32965 TGGCACC---TT-CTTTTCAAAGCCCACAACTCCG
1 TGGCACCTTTTTCCTTTT-AAAGCCCACAACTCCG
32996 TGGCACTCTTTTTCCCTTTTAAAGCCCACAACTCCG
1 TGGCAC-CTTTTT-CCTTTTAAAGCCCACAACTCCG
* * * *
33032 TGGCACCTTGTT-CTTTTTAAGTCCACAACTTCG
1 TGGCACCTTTTTCCTTTTAAAGCCCACAACTCCG
*
33065 TGGCATCTTT
1 TGGCACCTTT
33075 CACCCTTTCT
Statistics
Matches: 201, Mismatches: 26, Indels: 33
0.77 0.10 0.13
Matches are distributed among these distances:
30 14 0.07
31 61 0.30
32 2 0.01
33 26 0.13
34 7 0.03
35 27 0.13
36 52 0.26
37 12 0.06
ACGTcount: A:0.19, C:0.33, G:0.15, T:0.33
Consensus pattern (34 bp):
TGGCACCTTTTTCCTTTTAAAGCCCACAACTCCG
Found at i:33074 original size:97 final size:94
Alignment explanation
Indices: 32878--33074 Score: 211
Period size: 97 Copynumber: 2.0 Consensus size: 94
32868 CTCTTTTTCC
* * * *
32878 CTTTTAAAGCCCACAACTCCGTGGCACACTTTGTTTCTTTTAAGTCCACGAGTCCGTGGCACCTT
1 CTTTTAAAGCCCACAACTCCGTGGCACACTTTGTTCCTTTTAAGCCCACAACTCCGTGGCACCTT
* *
32943 CCTTTCAAAGTCCGCGACTCTGTGGCACCTT
66 CCTTTCAAAGTCCACAACTCTGTGGCA-C-T
*
32974 CTTTTCAAAGCCCACAACTCCGTGGCACTCTTT-TTCCCTTTTAAAGCCCACAACTCCGTGGCAC
1 CTTTT-AAAGCCCACAACTCCGTGGCACACTTTGTT-CCTTTT-AAGCCCACAACTCCGTGGCAC
* **
33038 CTTGTTCTTTTTAAGTCCACAACT-TCGTGGCA-T
63 C-T-TCCTTTCAAAGTCCACAACTCT-GTGGCACT
33071 CTTT
1 CTTT
33075 CACCCTTTCT
Statistics
Matches: 85, Mismatches: 10, Indels: 11
0.80 0.09 0.10
Matches are distributed among these distances:
96 7 0.08
97 36 0.42
98 19 0.22
99 2 0.02
100 21 0.25
ACGTcount: A:0.19, C:0.32, G:0.15, T:0.33
Consensus pattern (94 bp):
CTTTTAAAGCCCACAACTCCGTGGCACACTTTGTTCCTTTTAAGCCCACAACTCCGTGGCACCTT
CCTTTCAAAGTCCACAACTCTGTGGCACT
Found at i:33128 original size:33 final size:33
Alignment explanation
Indices: 33078--33507 Score: 637
Period size: 33 Copynumber: 13.2 Consensus size: 33
33068 CATCTTTCAC
*
33078 CCTT-TCTAAAGCGCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
*
33110 CCTTCTCTAAAGCCCACACAAGTCAGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
33143 CCTTCTCTAAAGCCCACACAAGTCGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
*
33175 CCTTCTTCTAAAGCCCACACAAGTCGGTGGCAAC
1 CCTTC-TCTAAAGCCCACACAAGTCGGTGGCAAA
*
33209 CCTTCTCTAAAGCTCACACAAGTCGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* * *
33241 CCTTCTTCTAAAACCCACACAAGCCGGTGGCAAC
1 CCTTC-TCTAAAGCCCACACAAGTCGGTGGCAAA
33275 CCTTCT-TAAAGCCCACACAAGTCGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
*
33306 CCTTCTTCTAAAGCCCACACAAGTCGGTGGCAAC
1 CCTTC-TCTAAAGCCCACACAAGTCGGTGGCAAA
33340 CCTTCT-TAAAGCCCACACAAGTCGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
*
33371 CCTTCTTCTAAAGCCCACACAAGTCGGTGGCAAC
1 CCTTC-TCTAAAGCCCACACAAGTCGGTGGCAAA
33405 CCTTCTC-AAAGCCCACACAAGTCGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* *
33436 CCCTCTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
*
33468 CCATTCTCTAAAGCCCACACAAGTCGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAAA
33502 CCTTCT
1 CCTTCT
33508 AAGCCCAATA
Statistics
Matches: 362, Mismatches: 22, Indels: 27
0.88 0.05 0.07
Matches are distributed among these distances:
31 19 0.05
32 110 0.30
33 206 0.57
34 27 0.07
ACGTcount: A:0.28, C:0.34, G:0.18, T:0.20
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:33323 original size:65 final size:66
Alignment explanation
Indices: 33076--33514 Score: 725
Period size: 65 Copynumber: 6.8 Consensus size: 66
33066 GGCATCTTTC
* *
33076 ACCCTT-TCTAAAGCGCACACAAGTCGGTGGCAAACCTTC-TCTAAAGCCCACACAAGTCAGTGG
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGC-AACCTTCTTCTAAAGCCCACACAAGTCGGTGG
33139 CA
65 CA
*
33141 AACCTTCTCTAAAGCCCACACAAGTCGGTGGCAACCTTCTTCTAAAGCCCACACAAGTCGGTGGC
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAACCTTCTTCTAAAGCCCACACAAGTCGGTGGC
33206 A
66 A
* * *
33207 ACCCTTCTCTAAAGCTCACACAAGTCGGTGGCAACCTTCTTCTAAAACCCACACAAGCCGGTGGC
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAACCTTCTTCTAAAGCCCACACAAGTCGGTGGC
33272 A
66 A
33273 ACCCTTCT-TAAAGCCCACACAAGTCGGTGGCAACCTTCTTCTAAAGCCCACACAAGTCGGTGGC
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAACCTTCTTCTAAAGCCCACACAAGTCGGTGGC
33337 A
66 A
33338 ACCCTTCT-TAAAGCCCACACAAGTCGGTGGCAACCTTCTTCTAAAGCCCACACAAGTCGGTGGC
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAACCTTCTTCTAAAGCCCACACAAGTCGGTGGC
33402 A
66 A
* *
33403 ACCCTTCTC-AAAGCCCACACAAGTCGGTGGCAACCCTC-TCTAAAGCCCACACAAGTTGGTGGC
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAACCTTCTTCTAAAGCCCACACAAGTCGGTGGC
33466 A
66 A
*
33467 ACCATTCTCTAAAGCCCACACAAGTCGGTGGCAACC--CTTCT-AAGCCCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAACCTTCTTCTAAAGCCCA
33515 ATATAGCTAG
Statistics
Matches: 356, Mismatches: 13, Indels: 12
0.93 0.03 0.03
Matches are distributed among these distances:
63 8 0.02
64 36 0.10
65 193 0.54
66 119 0.33
ACGTcount: A:0.29, C:0.34, G:0.18, T:0.19
Consensus pattern (66 bp):
ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAACCTTCTTCTAAAGCCCACACAAGTCGGTGGC
A
Found at i:33565 original size:49 final size:49
Alignment explanation
Indices: 33507--33777 Score: 289
Period size: 43 Copynumber: 5.7 Consensus size: 49
33497 GCAACCCTTC
* * * *
33507 TAAGCCCAATATAGCTAGCCTTGAATTAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
33556 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * *
33599 TAACTCCAATATCGCTGGCCTTGAATCAGCATATTGGTACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
33648 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
33691 TAAGTCAAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTT
* *
33743 TAAGTTCAATGTAGCTGG-CTTGAATCAGCACATTG
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTG
33778 ACATCCTTTT
Statistics
Matches: 183, Mismatches: 24, Indels: 28
0.78 0.10 0.12
Matches are distributed among these distances:
43 75 0.41
45 2 0.01
47 1 0.01
49 71 0.39
50 1 0.01
51 16 0.09
52 17 0.09
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
Found at i:33669 original size:92 final size:92
Alignment explanation
Indices: 33512--33786 Score: 435
Period size: 92 Copynumber: 3.0 Consensus size: 92
33502 CCTTCTAAGC
* * *
33512 CCAATATAGCTAGCCTTGAATTAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCT
33577 TGAATCAGCACATTGGCACCTTTAACT
66 TGAATCAGCACATTGGCACCTTTAACT
*
33604 CCAATATCGCTGGCCTTGAATCAGCATATTGGTACCTTCATCTTTAAGTCCAATGTAGCTGGCCT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCT
*
33669 TGAATCAGCACATTGGCACCTTTAAGT
66 TGAATCAGCACATTGGCACCTTTAACT
* *
33696 CAAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGG
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTTTAAGTCCAATGTAGCTGG
*
33761 -CTTGAATCAGCACATTGACATCCTTT
63 CCTTGAATCAGCACATTGGCA-CCTTT
33787 TTCTCATCTT
Statistics
Matches: 170, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
92 121 0.71
94 21 0.12
95 28 0.16
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (92 bp):
CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCT
TGAATCAGCACATTGGCACCTTTAACT
Found at i:33898 original size:67 final size:68
Alignment explanation
Indices: 33790--33916 Score: 184
Period size: 67 Copynumber: 1.9 Consensus size: 68
33780 ATCCTTTTTC
* * *
33790 TCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCGATGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
33854 TCT
66 TCT
* * * *
33857 TCATCTTTAAGTCCAATATTGATGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCGATGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
33917 AAAACCCAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
67 48 0.92
68 4 0.08
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCGATGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:34675 original size:13 final size:13
Alignment explanation
Indices: 34657--34713 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
34647 CATAAAGTGT
34657 TGTATCGATACAA
1 TGTATCGATACAA
34670 TGTATCGATACATAA
1 TGTATCGATAC--AA
34685 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
34702 TGTATCGATACA
1 TGTATCGATACA
34714 TAAGTGTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
15 2 0.05
17 2 0.05
19 11 0.29
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:34692 original size:32 final size:32
Alignment explanation
Indices: 34640--34732 Score: 177
Period size: 32 Copynumber: 2.9 Consensus size: 32
34630 AACGATTTGC
34640 ATCGATACATAAAGTGTTGTATCGATACAATGT
1 ATCGATACAT-AAGTGTTGTATCGATACAATGT
34673 ATCGATACATAAGTGTTGTATCGATACAATGT
1 ATCGATACATAAGTGTTGTATCGATACAATGT
34705 ATCGATACATAAGTGTTGTATCGATACA
1 ATCGATACATAAGTGTTGTATCGATACA
34733 TAAGTTTTGT
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
32 50 0.83
33 10 0.17
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.33
Consensus pattern (32 bp):
ATCGATACATAAGTGTTGTATCGATACAATGT
Found at i:34694 original size:19 final size:19
Alignment explanation
Indices: 34640--34751 Score: 122
Period size: 19 Copynumber: 6.5 Consensus size: 19
34630 AACGATTTGC
34640 ATCGATACATAAAGTGTTGT
1 ATCGATACAT-AAGTGTTGT
34660 ATCGATAC--AA----TGT
1 ATCGATACATAAGTGTTGT
34673 ATCGATACATAAGTGTTGT
1 ATCGATACATAAGTGTTGT
34692 ATCGATAC--AA----TGT
1 ATCGATACATAAGTGTTGT
34705 ATCGATACATAAGTGTTGT
1 ATCGATACATAAGTGTTGT
*
34724 ATCGATACATAAGTTTTGT
1 ATCGATACATAAGTGTTGT
34743 ATCGATACA
1 ATCGATACA
34752 ATATAAGCTA
Statistics
Matches: 79, Mismatches: 1, Indels: 25
0.75 0.01 0.24
Matches are distributed among these distances:
13 22 0.28
15 4 0.05
17 4 0.05
19 41 0.52
20 8 0.10
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (19 bp):
ATCGATACATAAGTGTTGT
Found at i:34812 original size:13 final size:13
Alignment explanation
Indices: 34794--34818 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34784 ACTACCCAAA
34794 TGTATCGATACAT
1 TGTATCGATACAT
34807 TGTATCGATACA
1 TGTATCGATACA
34819 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:34883 original size:52 final size:52
Alignment explanation
Indices: 34827--34955 Score: 231
Period size: 52 Copynumber: 2.5 Consensus size: 52
34817 CACTGATCTT
* *
34827 TGTATCGATACAAGCAGGCAAATTTGCCTAGATGTACCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTACCGATACACTATAAAA
*
34879 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTACCGATACACTATAAAA
34931 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
34956 TCATATTTCG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTACCGATACACTATAAAA
Found at i:36392 original size:21 final size:20
Alignment explanation
Indices: 36354--36392 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
36344 GTTGCATGTT
36354 TAAAAATTATTTTAAAATAC
1 TAAAAATTATTTTAAAATAC
36374 TAAAAGATT-TTTATAAAAT
1 TAAAA-ATTATTT-TAAAAT
36393 TTTTTAGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (20 bp):
TAAAAATTATTTTAAAATAC
Found at i:38644 original size:15 final size:15
Alignment explanation
Indices: 38624--38665 Score: 75
Period size: 15 Copynumber: 2.7 Consensus size: 15
38614 GTCAAACCCA
38624 CCAGTGTTGGTACCG
1 CCAGTGTTGGTACCG
38639 CCAGTGTTGGTACCG
1 CCAGTGTTGGTACCG
38654 CCAGTGCTTGGT
1 CCAGTG-TTGGT
38666 CGTCCTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 21 0.81
16 5 0.19
ACGTcount: A:0.12, C:0.26, G:0.33, T:0.29
Consensus pattern (15 bp):
CCAGTGTTGGTACCG
Found at i:40979 original size:36 final size:36
Alignment explanation
Indices: 40906--40979 Score: 112
Period size: 36 Copynumber: 2.1 Consensus size: 36
40896 TCAACAGGGT
* *
40906 AAGCTTTGATTCTTGTAATAGTCTCCATTCTTTTCA
1 AAGCTTTGATTCTTGTAATAGTCTCCACTCTTGTCA
* *
40942 AAGCTTTGGTTCTTGTAATAGTCTCTACTCTTGTCA
1 AAGCTTTGATTCTTGTAATAGTCTCCACTCTTGTCA
40978 AA
1 AA
40980 ATTGAGAACC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.23, C:0.19, G:0.14, T:0.45
Consensus pattern (36 bp):
AAGCTTTGATTCTTGTAATAGTCTCCACTCTTGTCA
Found at i:41727 original size:175 final size:175
Alignment explanation
Indices: 41423--41772 Score: 452
Period size: 175 Copynumber: 2.0 Consensus size: 175
41413 GCCAGGCATT
* * * * * *
41423 GATTCTTGTAACAGTCTCCATTTTTTCAAAATTGAGAACCTAAAACATATTCCTTTAATTTGTAT
1 GATTCTCGTAACAGTCTCCATCTTTTCAAAATTGAGAACCAAAAACACATTCCTTTAATTAGGAT
* * * *
41488 ACGTGACATTAATGCTTTGGGGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAA
66 ACATCACATTAATGCTTTGGGGTC-CAAGAAAAGCTTTTCTTTCCACCATTATTGATAGAATCAA
* * * *
41553 AGTTTGTCTTTTATATAAGACAAACATGAATACTAATGCTAATCCA
130 AGTTTGTCTCTAAAATAAGACAAACATGAATACTAATACTAATCCA
* * * * *
41599 GATTCTCGTAATAGTCTCCAATCTTTTCAAGATTGGGAACGAAAAACACATTCCTTTCATTAGGA
1 GATTCTCGTAACAGTCTCC-ATCTTTTCAAAATTGAGAACCAAAAACACATTCCTTTAATTAGGA
* * *
41664 TACATCACATTGATGCTTTGGTGT-CAAGAAAAG-TGTTTTTTTCCACCATTATTGATAGAATCA
65 TACATCACATTAATGCTTTGGGGTCCAAGAAAAGCT-TTTCTTTCCACCATTATTGATAGAATCA
*
41727 AAGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCC
129 AAGTTTGTCTCTAAAATAAGACAAACATGAATACTAATACTAATCC
41773 CCATTATTTT
Statistics
Matches: 149, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
174 1 0.01
175 75 0.50
176 17 0.11
177 56 0.38
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (175 bp):
GATTCTCGTAACAGTCTCCATCTTTTCAAAATTGAGAACCAAAAACACATTCCTTTAATTAGGAT
ACATCACATTAATGCTTTGGGGTCCAAGAAAAGCTTTTCTTTCCACCATTATTGATAGAATCAAA
GTTTGTCTCTAAAATAAGACAAACATGAATACTAATACTAATCCA
Found at i:42512 original size:476 final size:473
Alignment explanation
Indices: 41611--42572 Score: 1369
Period size: 476 Copynumber: 2.0 Consensus size: 473
41601 TTCTCGTAAT
*
41611 AGTCTCCAATCTTTTCAAGATTGGGAACGAAAAACACATTCCTTTCATTAGGATACATCACATTG
1 AGTCTCCAATCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATCACATTG
* *
41676 ATGCTTTGGTGTCAAGAAAAGTGTTTTTTTCCACCATTATTGATAGAATCAAAGTTTGTCTCTAA
66 ATGCTTTGGTGCCAAAAAAAGTGTTTTTTTCCACCATTATTGATAGAATCAAAGTTTGTCTCTAA
* * **
41741 AATAAGACAAACATGAATACTCATACTAATCCCCATTATTTTCAGGATTAGCACCACAAACATAG
131 AATAAGACAAACATGAATACTAATACTAATCCCCATTAGTTTCAAAATTAGCACCACAAACATAG
* * *
41806 ACTTCTCAGAAGAATACACGATATTGATGCTTTTGTTTCGCAAGAAACATTTTCTTCCCACCCAT
196 ACTTCTCAGAAGAATACACGATATTGATGATTTGGTTTCGCAAGAAACATTTTCTTCCCACCCAA
* * *
41871 TTTTGTAAAGTATAAGTTCGTACCTCAAATGAGACAAACAAGGGTTCTGGTAAGGATCTTCATTT
261 TTTTGTAAAGTATAAGTTCGTACCTCAAAAGAGACAAACAAGGATTCTAGTAAGGATCTTCATTT
* * * * *
41936 ATTTTGTGATTAGGCACTATAAACACATTCTCCTCCTTAGGATAATTGATATTGATGGTTTTCTT
326 ATTTAGTGATTAGACACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTTCTT
* *
42001 TGGCATGAAACTCTTTTATGTGCCCTATTTTCCTTAAAATCAAAGTTTG-ACTCTTAAATAAGAC
391 TGGCATGAAACTCTTTTATGTGCCCTATCTTCCTTAAAAGCAAAGTTTGTACT-TTAAATAAGAC
*
42065 AGGCATTGATTCCCATAAC
455 AGGCATTGATTCCCATAAA
* *
42084 AGTCTCCAATCTTTTCAAGATTGGGAACCAAATACACCTTCCTTTCATTAGGATACATCACATTG
1 AGTCTCCAATCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATCACATTG
42149 ATGCTTTGGTGCCACAAAAGAAGCT-TCTTTTTTCCACCATTATTGATAGAATCAAAGTTTGTCT
66 ATGCTTTGGTGCCA-AAAA-AAG-TGT-TTTTTTCCACCATTATTGATAGAATCAAAGTTTGTCT
* * *
42213 CTAAAATAAGACAAACATGAATACTAATACTAATCCCTATTCGTTTCAAAATTAGGCACCATAAA
127 CTAAAATAAGACAAACATGAATACTAATACTAATCCCCATTAGTTTCAAAATTA-GCACCACAAA
* **** * * *
42278 CATAGTCTTCTGTTTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAACGCTTTT-TTCCC
191 CATAGACTTCTCAGAAGAATACACGATATTGATGATTTGGTTTCGCAAGAAAC-ATTTTCTTCCC
* * * *
42342 A-CCAATTTTGTAAATTCTAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAAGGATCT
255 ACCCAATTTTGTAAAGTATAAGTTCGTACCTCAAAAGAGACAAACAAGGATTCTAGTAAGGATCT
*
42406 TTATTCT-TTTAGTGATTAGACACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGG
320 TCATT-TATTTAGTGATTAGACACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGG
* * * *
42470 TTTTCTTTTGCATGGAAA-TCTTTTCTTTGCCTTATCTTCCTTAAAAGCAAAGTTTGTACTTTAA
384 TTTTCTTTGGCAT-GAAACTCTTTTATGTGCCCTATCTTCCTTAAAAGCAAAGTTTGTACTTTAA
* * * *
42534 ATGAGACATGCATTGATTCTCGTAAA
448 ATAAGACAGGCATTGATTCCCATAAA
*
42560 AGTCTCCATTCTT
1 AGTCTCCAATCTT
42573 CACTCATTTC
Statistics
Matches: 432, Mismatches: 48, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
473 75 0.17
474 3 0.01
475 4 0.01
476 279 0.65
477 67 0.16
478 4 0.01
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (473 bp):
AGTCTCCAATCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATCACATTG
ATGCTTTGGTGCCAAAAAAAGTGTTTTTTTCCACCATTATTGATAGAATCAAAGTTTGTCTCTAA
AATAAGACAAACATGAATACTAATACTAATCCCCATTAGTTTCAAAATTAGCACCACAAACATAG
ACTTCTCAGAAGAATACACGATATTGATGATTTGGTTTCGCAAGAAACATTTTCTTCCCACCCAA
TTTTGTAAAGTATAAGTTCGTACCTCAAAAGAGACAAACAAGGATTCTAGTAAGGATCTTCATTT
ATTTAGTGATTAGACACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTTCTT
TGGCATGAAACTCTTTTATGTGCCCTATCTTCCTTAAAAGCAAAGTTTGTACTTTAAATAAGACA
GGCATTGATTCCCATAAA
Found at i:42862 original size:13 final size:13
Alignment explanation
Indices: 42844--42900 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
42834 CATAAAGTGT
42844 TGTATCGATACAA
1 TGTATCGATACAA
42857 TGTATCGATACATAA
1 TGTATCGATAC--AA
42872 GTGTTATATCGATACAA
1 -TG---TATCGATACAA
42889 TGTATCGATACA
1 TGTATCGATACA
42901 TAAGTTTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 21 0.55
15 2 0.05
16 4 0.11
17 2 0.05
19 9 0.24
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:42882 original size:32 final size:32
Alignment explanation
Indices: 42824--42921 Score: 160
Period size: 32 Copynumber: 3.0 Consensus size: 32
42814 TTCAACGATT
*
42824 TGTATCAATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACAT-AAGTGTTGTATCGATACAA
*
42857 TGTATCGATACATAAGTGTTATATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
42889 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
42921 T
1 T
42922 TTAAGCTACT
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
32 49 0.80
33 12 0.20
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:42883 original size:19 final size:18
Alignment explanation
Indices: 42826--42919 Score: 64
Period size: 19 Copynumber: 5.6 Consensus size: 18
42816 CAACGATTTG
*
42826 TATCAATACATAAAGTGTT
1 TATCGATACAT-AAGTGTT
42845 GTATCGATAC--AA-TG--
1 -TATCGATACATAAGTGTT
42859 TATCGATACATAAGTGTT
1 TATCGATACATAAGTGTT
42877 ATATCGATAC--AA-TG--
1 -TATCGATACATAAGTGTT
*
42891 TATCGATACATAAGTTTT
1 TATCGATACATAAGTGTT
42909 GTATCGATACA
1 -TATCGATACA
42920 ATTTAAGCTA
Statistics
Matches: 60, Mismatches: 2, Indels: 25
0.69 0.02 0.29
Matches are distributed among these distances:
13 18 0.30
15 4 0.07
16 7 0.12
17 4 0.07
19 19 0.32
20 8 0.13
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35
Consensus pattern (18 bp):
TATCGATACATAAGTGTT
Found at i:47019 original size:475 final size:475
Alignment explanation
Indices: 46124--49126 Score: 3866
Period size: 475 Copynumber: 6.3 Consensus size: 475
46114 CGTTACGACA
* * * * * *
46124 ATTAGGCACTATAAACACATTCTCCTCATCAGCAGACATGATATGGATGGTTTTCTTTTGCATGG
1 ATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGA
* *
46189 AAATCTTTCATTTGCCTTTTTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGA
66 AAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGA
* *
46254 TTCTTGTAATAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
131 TTCTCGTAATAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATA
* *
46319 CATCACATTGATGCTTTGGTGTCGCAAGAGA-AGCTTCTT-TTTCCCCCATTATTGATAGAATCA
196 CATGACATTGATGCTTTGGTGTCGCAAGA-ACAGCTT-TTCTTTCCACCATTATTGATAGAATCA
* * *
46382 AAGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCTATTCGTTTCAGAATTAG
259 AAGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAG
** * *
46447 GCACCATAAACATAGTCTTCTGTTTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAATGT
324 GCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGATTTGGTTTCGCAAGAAACGT
* * * *
46512 TTTTCTCCCACCAATTTTGTAAATTCTAAGTTCGTGCCTCAAAAGAGACAAACTTGGATTCTAGT
389 TTTTTTCCCACCAATTTTGTAAAGTATAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGT
46577 AAAGATCTTTATTCTTTTAGTG
454 AAAGATCTTTATTCTTTTAGTG
* * *
46599 ATTAGGCACTGTAAACACATTCTACTCATTAGGATAATTGATATTGATGGTTTT-TTCTTGCATG
1 ATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTT-TTGCATG
46663 AAAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTG
65 AAAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTG
* * * * * *
46728 ATTGTTGTAATAGCCTCCATTATTTTTAAAATTGAGAACCAAAAACACATTCCCTTCATTAGGAT
130 ATTCTCGTAATAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
* **
46793 ACATGACATTGATGCTTTGGTGTCACAAGAGA-AGCTTTTCTTTCTGCCATTATTGATAGAATCA
195 ACATGACATTGATGCTTTGGTGTCGCAAGA-ACAGCTTTTCTTTCCACCATTATTGATAGAATCA
* * * *
46857 AAGTTTGTCTCTGAAATAAAAGAAACATGAATACTCATACAAATCCCCATTCTTTTCAGGATTAG
259 AAGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAG
* * * *
46922 GTACCATAAACATAGTCTTCT-ATTTATGATACATGATATTGATGATTTGGTTTCGCAAGAAATG
324 GCACCATAAACATAGTCTTCTCA-TTAGGATACACGATATTGATGATTTGGTTTCGCAAGAAACG
* * *
46986 TTTTTTTCCCACCAATTTTGTAAATTTTAAGTTCGTGCCTCAAAAGAGACAAACTTGGATTCTAG
388 TTTTTTTCCCACCAATTTTGTAAAGTATAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAG
47051 TAAAGATCTTTATTCTTTTAGTG
453 TAAAGATCTTTATTCTTTTAGTG
* *
47074 ATTAGGCACTATAAACACATTTTACTCATTAGGATAAATGATATTGATGGTTTT-TTCTTGCATG
1 ATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTT-TTGCATG
*
47138 GAAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTG
65 AAAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTG
* * * * * *
47203 ATTGTTGTAATAGCCTCCATTATTTTTAAAATTGAGAACCAAAAACACATTCCCTTCATTAGGAT
130 ATTCTCGTAATAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
* *
47268 ACATGACATTGATGCTTTGGTGTCGCAAGAACAACTTTTCTTTCCACCGTTATTGATAGAATCAA
195 ACATGACATTGATGCTTTGGTGTCGCAAGAACAGCTTTTCTTTCCACCATTATTGATAGAATCAA
* * *
47333 AGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATCCCCAATCTTTTCAGGATTAGG
260 AGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGG
* * * * * *
47398 TACTATAAACATACTCTTCTCATGAGGATACACGATATTTATGCTTTGGTTTCGCAAGAAACGAT
325 CACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGATTTGGTTTCGCAAGAAACG-T
** * *
47463 TTCTTTT--CACCAATTTTTGTAAAGTATAAGTTTATTCCTCAAATGAGACAAACATGGATTCTA
389 TT-TTTTCCCACCAA-TTTTGTAAAGTATAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTA
* *
47526 GTAAGGATCTTCATTCATTTT-GTG
452 GTAAAGATCTTTATTC-TTTTAGTG
* *
47550 ATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTGTTTTGCATGA
1 ATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGA
* * * * * * * * * * * *
47615 AAATATTTTCTTTCCCCTAGTTCCCATAAAATAAAAGTTTG-ACCCTAAAATAAGACAAGCAGTG
66 AAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTA-CTTTAAATGAGACAAGCATTG
* * * * * * * *
47679 ATTCTCATAACAGTCTCCATTCTATCCAAGATTGGGAACCAAGAACACCTTCCCTTTATTAGGAT
130 ATTCTCGTAATAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
* * * * ** *
47744 ACATAACATTGATGCTTTGGTTTCGTAAGAACAGCTCTTCTTTCCACTGTTACTGATAGAATCAA
195 ACATGACATTGATGCTTTGGTGTCGCAAGAACAGCTTTTCTTTCCACCATTATTGATAGAATCAA
* * * *
47809 AGTTTGTCTCTAAAATATGAGAAACATGAATACTCATA-TAATCCCCATTCTTTTCAAGCTTAGG
260 AGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGG
* * * * ** * * * *
47873 CACCATAAAAATAGTCTTCTCATAATGATACACGATATGGATGCCTTGGTTTCGAAAGCAATGCT
325 CACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGATTTGGTTTCGCAAGAAACGTT
* * * * ** * *
47938 TTCTTCCCCCCAATTTTTGAAAAGTTTAAGTTTATGCCTCAAATGAGACAAATATGGATTCTAGT
390 TTTTTCCCACCAA-TTTTGTAAAGTATAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGT
* * *
48003 AAATATCTTCT-TTCATTTCGTG
454 AAAGATCTT-TATTCTTTTAGTG
* * *
48025 ATTAGGCA-TGATAAACACATTCTCCTCATTAGTATAAATGATATTGTTGGTTTT-TTTTAGCAG
1 ATTAGGCACT-ATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTT-GCAT
* * * * * * * * *
48088 GAAAATCTTTTTTTTGCCCTATTTTACTTAAAATCAAAGTTCGTCCCTTCAATAAGGCAAGCATT
64 GAAAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATT
* * * * *
48153 GATTCTCGTAATAGTCTCCAATCTTTTCAAGAGTGGGAACGAAAAACACATTCCTTTCATTAGGA
129 GATTCTCGTAATAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGA
*
48218 TACATGACATTGATGCTTTGGTGT--CAAGAACAGCTTTTTTTTTTCCACCATTATTGATAGAAT
194 TACATGACATTGATGCTTTGGTGTCGCAAGAACAGC--TTTTCTTTCCACCATTATTGATAGAAT
*
48281 CAAAGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTATTTTCAGGATT
257 CAAAGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATT
** * * * * * *
48346 AGGCACCCCAAACATAGACTTCTCATAAGAATACACGATATTGATGCTTTTGATTCGCAAGAAAC
322 AGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGATTTGGTTTCGCAAGAAAC
* * * * * * *
48411 ATTTTCTTCCCACCCATTTTTGTAAAGTATAAGTTCGTACCTCAAACGAGACAAACAAGGGTTCT
387 GTTTTTTTCCCA-CCAATTTTGTAAAGTATAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCT
* * * *
48476 GGTAAGGATCTTCATT-TATTTTGTG
451 AGTAAAGATCTTTATTCT-TTTAGTG
* * *
48501 ATTAGGCACTATAAACACATTCTCCTCCTTAGGATAATTGATATTGATGGTTTTCTTTGGCATGA
1 ATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGA
* * * * * *
48566 AACTCTTTTCTGTGCCCTATTTTCCTTAAAATCAAAGTTTG-ACTCTTAAATAAGACAGGCATTG
66 AAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACT-TTAAATGAGACAAGCATTG
* * * * * *
48630 ATTCCCGTAATAGTCTCCAATCTTTTCAAGATTGGGAACCAAATACACCTTCCTTTCATTAGGAT
130 ATTCTCGTAATAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
* * * *
48695 ACATCACATTGATGCTTTGGTGCCGCAAGAGA-AGCTTCTTTTTTCCATCATTATTGATAGAATC
195 ACATGACATTGATGCTTTGGTGTCGCAAGA-ACAGCTT-TTCTTTCCACCATTATTGATAGAATC
* * **
48759 AAAGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCTATTCATTTCAAAATTA
258 AAAGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTA
* **
48824 GGCACCATAAACATAGTCTTTTGTTTAGGATACACGATATTGATGATTTGGTTTCGCAAGAAACG
323 GGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGATTTGGTTTCGCAAGAAACG
* * *
48889 CTTTTTTCCCACCAATTTTGTAAATTCTAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAG
388 TTTTTTTCCCACCAATTTTGTAAAGTATAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAG
*
48954 TAAGGATCTTTATTCTTTTAGTG
453 TAAAGATCTTTATTCTTTTAGTG
* * *
48977 ATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTTCTTTTGAATGG
1 ATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGA
* * *
49042 AAATCTTTTCTTTGCCTTATTTTCCTTAAAAGCAAAGTTTGTACTTTAAATGAGACATGCATTGA
66 AAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGA
*
49107 TTCTCGTAAAAGTCTCCATT
131 TTCTCGTAATAGTCTCCATT
49127 CTTCACTCAT
Statistics
Matches: 2223, Mismatches: 272, Indels: 65
0.87 0.11 0.03
Matches are distributed among these distances:
473 12 0.01
474 15 0.01
475 1182 0.53
476 837 0.38
477 168 0.08
478 8 0.00
479 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (475 bp):
ATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGA
AAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGA
TTCTCGTAATAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATA
CATGACATTGATGCTTTGGTGTCGCAAGAACAGCTTTTCTTTCCACCATTATTGATAGAATCAAA
GTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGC
ACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGATTTGGTTTCGCAAGAAACGTTT
TTTTCCCACCAATTTTGTAAAGTATAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAA
AGATCTTTATTCTTTTAGTG
Found at i:47161 original size:157 final size:156
Alignment explanation
Indices: 46525--47161 Score: 376
Period size: 159 Copynumber: 4.0 Consensus size: 156
46515 TCTCCCACCA
*
46525 ATTTTGTAAATTCTAAGTTCGTGCCTCAAAAGAGACAAACTTGGATTCTAGTAAAGATCTTTATT
1 ATTTTGTAAATTCAAAGTTCGTGCCTCAAAAGAGACAAACTTGGATTCTAGTAAAGATCTTTATT
** * *
46590 CTTTTAGTGATTAGGCACTGTAAACACATTCTACTCATTAGGATAATTGATATTGATGGTTTTTT
66 CTTTTAGTGATTAGGCACCATAAACACATTTTACTCATTAGGATAAATGATATTGATGGTTTTTT
*
46655 CTTGCATGAAAATCTTTTATTTGCCTT
131 CTTGCAAG-AAATCTTTTATTTGCCTT
* * * * * * * * * * *
46682 ATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATT-GATTGTTGTAATAGCCTCC
1 ATTTT--GTAAATTCAAAGTTCGTGCCTCAAAAGAGACAAAC-TTGGATTCTAGTAA-AG-AT-C
* ** * * ** * *
46746 ATTA-T-TTTTA-AAATT-GAGAACCAAAAACACA-TTCCCTTCATTAGGATACATGACATTGAT
60 TTTATTCTTTTAGTGATTAG-GCACCATAAACACATTTTAC-TCATTAGGATAAATGATATTGAT
* ** * ** * *
46806 GCTTTGGTGTCACAAGAGAAGCTTTTCTTTCTGCC--
123 GGTTTTTTCTTGCAAGA-AATCTTTT-ATT-TGCCTT
* * * * * * *
46841 ATTATTGATAGAA-TCAAAGTTTGT-CTCTGAAATA-AAAGAAACATGAATACTCA-TACAA-AT
1 ATT-TTG-TA-AATTCAAAGTTCGTGC-CTCAAA-AGAGACAAACTTGGATTCT-AGTA-AAGAT
*** * * * * *
46901 CCCCATTCTTTTCAG-GATTAGGTACCATAAACATAGTCTT-CT-ATTTATGATACATGATATTG
59 CTTTATTCTTTT-AGTGATTAGGCACCATAAACACA-TTTTACTCA-TTAGGATAAATGATATTG
* * * **
46963 ATGATTTGGTTTC--GCAAGAAATGTTTT-TTTCCCACCA
121 ATGGTTT--TTTCTTGCAAGAAATCTTTTATTT-GC-CTT
**
47000 ATTTTGTAAATTTTAAGTTCGTGCCTCAAAAGAGACAAACTTGGATTCTAGTAAAGATCTTTATT
1 ATTTTGTAAATTCAAAGTTCGTGCCTCAAAAGAGACAAACTTGGATTCTAGTAAAGATCTTTATT
*
47065 CTTTTAGTGATTAGGCACTATAAACACATTTTACTCATTAGGATAAATGATATTGATGGTTTTTT
66 CTTTTAGTGATTAGGCACCATAAACACATTTTACTCATTAGGATAAATGATATTGATGGTTTTTT
*
47130 CTTGCATGGAAATCTTTTATTTGCCTT
131 CTTGCA-AGAAATCTTTTATTTGCCTT
47157 ATTTT
1 ATTTT
47162 CCTTAAAATC
Statistics
Matches: 345, Mismatches: 90, Indels: 90
0.66 0.17 0.17
Matches are distributed among these distances:
155 5 0.01
156 16 0.05
157 98 0.28
158 32 0.09
159 164 0.48
160 18 0.05
161 8 0.02
162 4 0.01
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.39
Consensus pattern (156 bp):
ATTTTGTAAATTCAAAGTTCGTGCCTCAAAAGAGACAAACTTGGATTCTAGTAAAGATCTTTATT
CTTTTAGTGATTAGGCACCATAAACACATTTTACTCATTAGGATAAATGATATTGATGGTTTTTT
CTTGCAAGAAATCTTTTATTTGCCTT
Found at i:48096 original size:951 final size:946
Alignment explanation
Indices: 46124--49126 Score: 4046
Period size: 951 Copynumber: 3.2 Consensus size: 946
46114 CGTTACGACA
* * * * * *
46124 ATTAGGCACTATAAACACATTCTCCTCATCAGCAGACATGATATGGATGGTTTTCTTTTGCATGG
1 ATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGG
* *
46189 AAATCTTTCATTTGCCTTTTTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGA
66 AAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGA
*
46254 TTCTTGTAATAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
131 TTCTCGTAATAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
* *
46319 CATCACATTGATGCTTTGGTGTCGCAAGAGA-AGCTTCTTTTTCCCCCATTATTGATAGAATCAA
196 CATGACATTGATGCTTTGGTGTCGCAAGA-ACAGCTT-TTTTTCCACCATTATTGATAGAATCAA
* * *
46383 AGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCTATTCGTTTCAGAATTAGG
259 AGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGG
** * * * *
46448 CACCATAAACATAGTCTTCTGTTTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAATG-T
324 CACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAACGAT
* * * *
46512 TT-TTCTCCCACCAA-TTTTGTAAATTCTAAGTTCGTGCCTCAAAAGAGACAAACTTGGATTCTA
389 TTCTT-T-CCACCAATTTTTGTAAAGTATAAGTTCGTACCTCAAAAGAGACAAACATGGATTCTA
* * * *
46575 GTAAAGATCTTTATTC-TTTTAGTGATTAGGCACTGTAAACACATTCTACTCATTAGGATAATTG
452 GTAAGGATCTTCATTCATTTT-GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAATTG
* *
46639 ATATTGATGGTTTTTTCTTGCATGAAAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTT
516 ATATTGATGGTTTTTT-TTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTT
* * * * * * * * *
46704 GTA-CTTTAAATGAGACAAGCATTGATTGTTGTAATAGCCTCCATTATTTTTAAAATTGAGAACC
580 G-ACCCTTAAATAAGACAAGCATTGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACC
* * * * *
46768 AAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTC
644 -AAAACACCTTCCCTTTATTAGGATACATAACATTGATGCTTTGGTGTCGCAAGAGAAGCTCTTC
** * * * *
46833 TTTCTGCCATTATTGATAGAATCAAAGTTTGTCTCTGAAATAAAAGAAACATGAATACTCATACA
708 TTTCCACTATTATTGATAGAATCAAAGTTTGTCTCTAAAATAAGAGAAACATGAATACTCATACT
* * *
46898 AATCCCCATTCTTTTCAGGATTAGGTACCATAAACATAGTCTTCTATTTATGATACATGATATTG
773 AATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTA-TTATGATACACGATATTG
*
46963 ATGATTTGGTTTCGCAAGAAATGTTTTTTTCCCACCAATTTTGTAAATTTTAAGTTCGTGCCTCA
837 ATGATTTGGTTTCGCAAGAAATGCTTTTTTCCCACCAATTTTGTAAA-TTTAAGTTCGTGCCTCA
47028 AAAGAGACAAACT-TGGATTCTAGTAAAGATCTTTATTCTTTTAGTG
901 AAAGAGACAAA-TATGGATTCTAGTAAAGATCTTTATTCTTTTAGTG
*
47074 ATTAGGCACTATAAACACATTTTACTCATTAGGATAAATGATATTGATGGTTTT-TTCTTGCATG
1 ATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTTCTT-TTGCATG
47138 GAAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTG
65 GAAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTG
* * * * * * *
47203 ATTGTTGTAATAGCCTCCATTATTTTTAAAATTGAGAACCAAAAACACATTCCCTTCATTAGGAT
130 ATTCTCGTAATAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGAT
* *
47268 ACATGACATTGATGCTTTGGTGTCGCAAGAACAACTTTTCTTTCCACCGTTATTGATAGAATCAA
195 ACATGACATTGATGCTTTGGTGTCGCAAGAACAGCTTTT-TTTCCACCATTATTGATAGAATCAA
* * *
47333 AGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATCCCCAATCTTTTCAGGATTAGG
259 AGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGG
* * * * *
47398 TACTATAAACATACTCTTCTCATGAGGATACACGATATTTATGCTTTGGTTTCGCAAGAAACGAT
324 CACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAACGAT
* ** * *
47463 TTCTTTTCACCAATTTTTGTAAAGTATAAGTTTATTCCTCAAATGAGACAAACATGGATTCTAGT
389 TTCTTTCCACCAATTTTTGTAAAGTATAAGTTCGTACCTCAAAAGAGACAAACATGGATTCTAGT
*
47528 AAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
454 AAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAATTGATA
* * * * * * *
47593 TTGATGATTTTGTTTTGCATGAAAATATTTTCTTTCCCCTAGTTCCCATAAAATAAAAGTTTGAC
519 TTGATGGTTTT-TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTGAC
* * * * * *
47658 CCTAAAATAAGACAAGCAGTGATTCTCATAACAGTCTCCATTCTATCCAAGATTGGGAACCAAGA
583 CCTTAAATAAGACAAGCATTGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAA-A
* *
47723 ACACCTTCCCTTTATTAGGATACATAACATTGATGCTTTGGTTTCGTAAGA-ACAGCTCTTCTTT
647 ACACCTTCCCTTTATTAGGATACATAACATTGATGCTTTGGTGTCGCAAGAGA-AGCTCTTCTTT
* * *
47787 CCACTGTTACTGATAGAATCAAAGTTTGTCTCTAAAATATGAGAAACATGAATACTCATA-TAAT
711 CCACTATTATTGATAGAATCAAAGTTTGTCTCTAAAATAAGAGAAACATGAATACTCATACTAAT
* * * *
47851 CCCCATTCTTTTCAAGCTTAGGCACCATAAAAATAGTCTTCTCATAATGATACACGATATGGATG
776 CCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCT-ATTATGATACACGATATTGATG
** * * * * * **
47916 CCTTGGTTTCGAAAGCAATGCTTTCTTCCCCCCAATTTTTGAAAAGTTTAAGTTTATGCCTCAAA
840 ATTTGGTTTCGCAAGAAATGCTTTTTTCCCACCAA-TTTTGTAAA-TTTAAGTTCGTGCCTCAAA
* * * *
47981 TGAGACAAATATGGATTCTAGTAAATATCTTCT-TTCATTTCGTG
903 AGAGACAAATATGGATTCTAGTAAAGATCTT-TATTCTTTTAGTG
* * *
48025 ATTAGGCA-TGATAAACACATTCTCCTCATTAGTATAAATGATATTGTTGGTTTT-TTTTAGCA-
1 ATTAGGCACT-ATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTTCTTTT-GCAT
* * * * * * * * *
48087 GGAAAATCTTTTTTTTGCCCTATTTTACTTAAAATCAAAGTTCGTCCCTTCAATAAGGCAAGCAT
64 GG-AAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCAT
* * * *
48152 TGATTCTCGTAATAGTCTCCAATCTTTTCAAGAGTGGGAACGAAAAACACATTCCTTTCATTAGG
128 TGATTCTCGTAATAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGG
48217 ATACATGACATTGATGCTTTGGTGT--CAAGAACAGCTTTTTTTTTTCCACCATTATTGATAGAA
193 ATACATGACATTGATGCTTTGGTGTCGCAAGAACAGC---TTTTTTTCCACCATTATTGATAGAA
*
48280 TCAAAGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTATTTTCAGGAT
255 TCAAAGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGAT
** * * * *
48345 TAGGCACCCCAAACATAGACTTCTCATAAGAATACACGATATTGATGCTTTTGATTCGCAAGAAA
320 TAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAA
* * * * *
48410 C-ATTTTCTTCCCACCCATTTTTGTAAAGTATAAGTTCGTACCTCAAACGAGACAAACAAGGGTT
385 CGA-TTTCTTTCCACCAATTTTTGTAAAGTATAAGTTCGTACCTCAAAAGAGACAAACATGGATT
* * *
48474 CTGGTAAGGATCTTCATTTATTTTGTGATTAGGCACTATAAACACATTCTCCTCCTTAGGATAAT
449 CTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAT
* * *
48539 TGATATTGATGGTTTTCTTTGGCATGAAACTCTTTTCTGTGCCCTATTTTCCTTAAAATCAAAGT
514 TGATATTGATGGTTTT-TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT
* * * *
48604 TTGACTCTTAAATAAGACAGGCATTGATTCCCGTAATAGTCTCCAATCTTTTCAAGATTGGGAAC
578 TTGACCCTTAAATAAGACAAGCATTGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAC
* *
48669 CAAATACACCTT-CCTTTCATTAGGATACATCACATTGATGCTTTGGTGCCGCAAGAGAAGCTTC
643 CAAA-ACACCTTCCCTTT-ATTAGGATACATAACATTGATGCTTTGGTGTCGCAAGAGAAGC-TC
* *
48733 TTTTTTCCA-TCATTATTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATACTCA
705 TTCTTTCCACT-ATTATTGATAGAATCAAAGTTTGTCTCTAAAATAAGAGAAACATGAATACTCA
* * * * * *
48797 TACTAATCCCTATTCATTTCAAAATTAGGCACCATAAACATAGTCTTTTGTTTAGGATACACGAT
769 TACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCT-ATTATGATACACGAT
*
48862 ATTGATGATTTGGTTTCGCAAGAAACGCTTTTTTCCCACCAATTTTGTAAATTCTAAGTTCGTGC
833 ATTGATGATTTGGTTTCGCAAGAAATGCTTTTTTCCCACCAATTTTGTAAATT-TAAGTTCGTGC
* *
48927 CTCAAAAGAGACAAACATGGATTCTAGTAAGGATCTTTATTCTTTTAGTG
897 CTCAAAAGAGACAAATATGGATTCTAGTAAAGATCTTTATTCTTTTAGTG
*
48977 ATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTTCTTTTGAATGG
1 ATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGG
* * *
49042 AAATCTTTTCTTTGCCTTATTTTCCTTAAAAGCAAAGTTTGTACTTTAAATGAGACATGCATTGA
66 AAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGA
*
49107 TTCTCGTAAAAGTCTCCATT
131 TTCTCGTAATAGTCTCCATT
49127 CTTCACTCAT
Statistics
Matches: 1782, Mismatches: 238, Indels: 64
0.86 0.11 0.03
Matches are distributed among these distances:
949 14 0.01
950 454 0.25
951 964 0.54
952 257 0.14
953 93 0.05
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (946 bp):
ATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGG
AAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGA
TTCTCGTAATAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
CATGACATTGATGCTTTGGTGTCGCAAGAACAGCTTTTTTTCCACCATTATTGATAGAATCAAAG
TTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCA
CCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAACGATTT
CTTTCCACCAATTTTTGTAAAGTATAAGTTCGTACCTCAAAAGAGACAAACATGGATTCTAGTAA
GGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAATTGATATT
GATGGTTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTGACCCT
TAAATAAGACAAGCATTGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAACAC
CTTCCCTTTATTAGGATACATAACATTGATGCTTTGGTGTCGCAAGAGAAGCTCTTCTTTCCACT
ATTATTGATAGAATCAAAGTTTGTCTCTAAAATAAGAGAAACATGAATACTCATACTAATCCCCA
TTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTATTATGATACACGATATTGATGATTTGG
TTTCGCAAGAAATGCTTTTTTCCCACCAATTTTGTAAATTTAAGTTCGTGCCTCAAAAGAGACAA
ATATGGATTCTAGTAAAGATCTTTATTCTTTTAGTG
Found at i:49186 original size:166 final size:166
Alignment explanation
Indices: 48975--49292 Score: 528
Period size: 166 Copynumber: 1.9 Consensus size: 166
48965 ATTCTTTTAG
* * *
48975 TGATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTTCTTTTGAAT
1 TGATTAGGCACTATAAACACATTCTACTCATCAGCAGAAATGATATTGATGGTTTTCTTTTGAAT
* *
49040 GGAAATCTTTTCTTTGCCTTATTTTCCTTAAAAGCAAAGTTTGTACTTTAAATGAGACATGCATT
66 GGAAATCTTTTATTTGCCTTATTTTCCTTAAAAGCAAAGTTTGTACTTTAAATGAGACAAGCATT
49105 GATTCTCGTAAAAGTCTCCATTCTTCACTCATTTCA
131 GATTCTCGTAAAAGTCTCCATTCTTCACTCATTTCA
* * *
49141 TGATTAGGCACTATAAACACATTCTCCTCATCAGCAGACATGATATTGATGGTTTTCTTTTGCAT
1 TGATTAGGCACTATAAACACATTCTACTCATCAGCAGAAATGATATTGATGGTTTTCTTTTGAAT
* *
49206 GGAAATCTTTTATTTGCCTTTTTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATT
66 GGAAATCTTTTATTTGCCTTATTTTCCTTAAAAGCAAAGTTTGTACTTTAAATGAGACAAGCATT
* *
49271 GATTCTTGTAACAGTCTCCATT
131 GATTCTCGTAAAAGTCTCCATT
49293 ATTTTCAAGA
Statistics
Matches: 140, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
166 140 1.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (166 bp):
TGATTAGGCACTATAAACACATTCTACTCATCAGCAGAAATGATATTGATGGTTTTCTTTTGAAT
GGAAATCTTTTATTTGCCTTATTTTCCTTAAAAGCAAAGTTTGTACTTTAAATGAGACAAGCATT
GATTCTCGTAAAAGTCTCCATTCTTCACTCATTTCA
Found at i:49708 original size:475 final size:474
Alignment explanation
Indices: 49141--50875 Score: 2452
Period size: 475 Copynumber: 3.7 Consensus size: 474
49131 ACTCATTTCA
* * * *
49141 TGATTAGGCACTATAAACACATTCTCCTCATCAGCAGACATGATATTGATGGTTTTCTTTTGCAT
1 TGATTAGGCACTATAAACACATTCTACTCATTAGCATAAATGATATTGATGGTTTTCTTTTGCAT
*
49206 GGAAATCTTTTATTTGCCTTTTTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATT
66 GGAAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATT
* * * *
49271 GATTCTTGTAACAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGA
131 GATTCTTGTAATAGCCTCCATTATTTTCAAAATTGAGAACCAAAAACACATTCCTTTCATTAGGA
* * *
49336 TACATCACATTGATGCTTTGGTGTCGCAAGAGAAGCTTCTT-TTTCCCCCATTATTGATAGAATC
196 TACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTT-TTCTTTCCGCCATTATTGATAGAATC
* * * *
49400 AAAGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCTATTCGTTTCAGAATTA
260 AAAGTTTGTCTCTAAAATAAAACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTA
*
49465 GGCACCATAAACATAGTCTTCTGTTTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAATG
325 GGTACCATAAACATAGTCTTCTGTTTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAATG
49530 TTTTTCTCCCACCAATTTTGTAAATTCTAAGTTCGTGCCTCAAAAGAGACAAACTTGGATTCTAG
390 TTTTT-TCCCACCAATTTTGTAAATTCTAAGTTCGTGCCTCAAAAGAGACAAACTTGGATTCTAG
49595 TAAAGATCTTTATTCTTTTAG
454 TAAAGATCTTTATTCTTTTAG
* * *
49616 GGATTAGGCACTGTAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTT-TTCTTGCA
1 TGATTAGGCACTATAAACACATTCTACTCATTAGCATAAATGATATTGATGGTTTTCTT-TTGCA
* *
49680 TGGAAATCTTTTATTTGCCTTATTTTCCTTAAAATCAATGTTTATACTTTAAATGAGACAAGCAT
65 TGGAAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCAT
* * * * *
49745 TGATTGTTGTAATAGCCTCAATTATTTTTAAAATTAAGAACCAAAAACACATTCCCTTCATTAGG
130 TGATTCTTGTAATAGCCTCCATTATTTTCAAAATTGAGAACCAAAAACACATTCCTTTCATTAGG
* *
49810 ATACATGACATTGATGCTTTGGTGTCATAAGAGAAGCTTTTCTTTCTGCCATTATTGATAGAATC
195 ATACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCGCCATTATTGATAGAATC
* * *
49875 AAAGGTTGTCTCTAAAATAAAAGAAACATGAATACTCATACAAATCCCCATTCTTTTCAGGATTA
260 AAAGTTTGTCTCTAAAATAAAACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTA
*
49940 GGTACCATAAACATAGTCTTCTGTTTAGGATACATGATATTGATGATTTGGTTTCGCATGAAATG
325 GGTACCATAAACATAGTCTTCTGTTTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAATG
* *
50005 TTTTTTTCCCACCAATTTTGTAAATTTTAAGTTCGTGCCTCAAAAGAAACAAACTTGGATTCTAG
390 -TTTTTTCCCACCAATTTTGTAAATTCTAAGTTCGTGCCTCAAAAGAGACAAACTTGGATTCTAG
50070 TAAAGATCTTTATTCTTTTAG
454 TAAAGATCTTTATTCTTTTAG
50091 TGATTAGGCACTATAAACACATTCTACTCATTAGCATAAATGATATTGATGGTTTT-TTCTTGCA
1 TGATTAGGCACTATAAACACATTCTACTCATTAGCATAAATGATATTGATGGTTTTCTT-TTGCA
50155 TGGAAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCAT
65 TGGAAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCAT
* *
50220 TGATTGTTGTAATAGCCTCCATTATTTTTAAAATTGAGAACCAAAAACACATTCCCTTT-ATTAG
130 TGATTCTTGTAATAGCCTCCATTATTTTCAAAATTGAGAACCAAAAACACATT-CCTTTCATTAG
* *
50284 GATACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTCTCTTTCTGCCATTATTGATAGAAT
194 GATACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCGCCATTATTGATAGAAT
* *
50349 CAAAGTTTGTCTCTGAAATAAAAGAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATT
259 CAAAGTTTGTCTCTAAAATAAAACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATT
* ** * * * ** * *
50414 AGGTACCATAAATATAGTCTTCTCATAAGGATACACGATATTGCTGCGTTGGTTTCGTAAGAAAC
324 AGGTACCATAAACATAGTCTTCTGTTTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAT
* * * * * * * **
50479 GCTTTATTCCCACTAATTTTTGAAAAGTCTATGTTCATGCCTCAAATGAGACAAACAGGGATTCT
389 G-TTTTTTCCCACCAA-TTTTGTAAATTCTAAGTTCGTGCCTCAAAAGAGACAAACTTGGATTCT
* * * * *
50544 AGTAAGGATCTTCATTCATCTCG
452 AGTAAAGATCTTTATTCTTTTAG
* * * * * * *
50567 TGATTAGGCACTACAAACACATTCTCCTCAGTAGGATAAAAGATATTGATAGTTTTCTTTTGCGT
1 TGATTAGGCACTATAAACACATTCTACTCATTAGCATAAATGATATTGATGGTTTTCTTTTGCAT
* * * * * * *
50632 GGAAATCTTTTTTTTGCCTCATTTTCTTTAAAATTAAAGTTTGCACTTTAAATGAGACATGCAGT
66 GGAAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATT
** * * * * * * * * *
50697 GATTCTCATAAAAGTCTCCATTCTTTCCAATAGTGGGAACCAAAAGCACATTTCTTTCATTAGGA
131 GATTCTTGTAATAGCCTCCATTATTTTCAAAATTGAGAACCAAAAACACATTCCTTTCATTAGGA
* * * * * * *
50762 TACATGACATTGATGCTTTGGTGTCACCAGAAAAGCTTTTCTTTTCACCGTTATTAACAGAATCA
196 TACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCGCCATTATTGATAGAATCA
* * * * *
50827 AAGTTTATCTCTTAAATAAGACAAACATGAATTCTCATATTAATCCCCA
261 AAGTTTGTCTCTAAAATAAAACAAACATGAATACTCATACTAATCCCCA
50876 ATCTCTTATG
Statistics
Matches: 1135, Mismatches: 118, Indels: 13
0.90 0.09 0.01
Matches are distributed among these distances:
474 4 0.00
475 804 0.71
476 325 0.29
477 2 0.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (474 bp):
TGATTAGGCACTATAAACACATTCTACTCATTAGCATAAATGATATTGATGGTTTTCTTTTGCAT
GGAAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATT
GATTCTTGTAATAGCCTCCATTATTTTCAAAATTGAGAACCAAAAACACATTCCTTTCATTAGGA
TACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCGCCATTATTGATAGAATCA
AAGTTTGTCTCTAAAATAAAACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAG
GTACCATAAACATAGTCTTCTGTTTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAATGT
TTTTTCCCACCAATTTTGTAAATTCTAAGTTCGTGCCTCAAAAGAGACAAACTTGGATTCTAGTA
AAGATCTTTATTCTTTTAG
Found at i:49730 original size:641 final size:642
Alignment explanation
Indices: 48499--49749 Score: 2091
Period size: 641 Copynumber: 2.0 Consensus size: 642
48489 ATTTATTTTG
* * * *
48499 TGATTAGGCACTATAAACACATTCTCCTCCTTAGGATAATTGATATTGATGGTTTTCTTTGGCAT
1 TGATTAGGCACTATAAACACATTCTCCTCATCAGCAGAATTGATATTGATGGTTTTCTTTGGCAT
* *
48564 GAAACTCTTTTCTGTGCCCTATTTTCCTTAAAATCAAAGTTTGACTCTTAAATAAGACAGGCATT
66 GAAACTCTTTTATGTGCCCTATTTTCCTTAAAATCAAAGTTTGACTCTTAAATAAGACAAGCATT
* * * *
48629 GATTCCCGTAATAGTCTCCAATCTTTTCAAGATTGGGAACCAAATACACCTTCCTTTCATTAGGA
131 GATTCCCGTAACAGTCTCCAATATTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGA
*
48694 TACATCACATTGATGCTTTGGTGCCGCAAGAGAAGCTTCTTTTTTCCATCATTATTGATAGAATC
196 TACATCACATTGATGCTTTGGTGCCGCAAGAGAAGCTTCTTTTTTCCACCATTATTGATAGAATC
48759 AAAGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCTATTCATTTCAAAATTA
261 AAAGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCTATTCATTTCAAAATTA
*
48824 GGCACCATAAACATAGTCTTTTGTTTAGGATACACGATATTGATGATTTGGTTTCGCAAGAAACG
326 GGCACCATAAACATAGTCTTCTGTTTAGGATACACGATATTGATGATTTGGTTTCGCAAGAAACG
48889 CTTTTTTCCCACCAATTTTGTAAATTCTAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAG
391 CTTTTTTCCCACCAATTTTGTAAATTCTAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAG
* *
48954 TAAGGATCTTTATTCTTTTAGTGATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGAT
456 TAAAGATCTTTATTCTTTTAGGGATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGAT
* *
49019 ATTGATGGTTTTCTTTTGAATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAAGCAAAGTTTGT
521 ATTGATGGTTTTCTTTTGAATGGAAATCTTTTATTTGCCTTATTTTCCTTAAAAGCAAAGTTTAT
*
49084 ACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTCACTCATTTCA
586 ACTTTAAATGAGACAAGCATTGATTCTCGTAAAAGTCTCCATTCTTCACTCATTTCA
*
49141 TGATTAGGCACTATAAACACATTCTCCTCATCAGCAGACA-TGATATTGATGGTTTTCTTTTGCA
1 TGATTAGGCACTATAAACACATTCTCCTCATCAGCAGA-ATTGATATTGATGGTTTTCTTTGGCA
* * * *
49205 TGGAAA-TCTTTTATTTGCCTTTTTTTCCTTAAAATCAAAGTTTGTACT-TTAAATGAGACAAGC
65 T-GAAACTCTTTTATGTGCCCTATTTTCCTTAAAATCAAAGTTTG-ACTCTTAAATAAGACAAGC
** *
49268 ATTGATTCTTGTAACAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTA
128 ATTGATTCCCGTAACAGTCTCCAATATTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTA
* *
49333 GGATACATCACATTGATGCTTTGGTGTCGCAAGAGAAGCTTC-TTTTTCCCCCATTATTGATAGA
193 GGATACATCACATTGATGCTTTGGTGCCGCAAGAGAAGCTTCTTTTTTCCACCATTATTGATAGA
* *
49397 ATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCTATTCGTTTCAGAA
258 ATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCTATTCATTTCAAAA
*
49462 TTAGGCACCATAAACATAGTCTTCTGTTTAGGATACATGATATTGATGATTTGGTTTCGCAAGAA
323 TTAGGCACCATAAACATAGTCTTCTGTTTAGGATACACGATATTGATGATTTGGTTTCGCAAGAA
* *
49527 ATG-TTTTTCTCCCACCAATTTTGTAAATTCTAAGTTCGTGCCTCAAAAGAGACAAACTTGGATT
388 ACGCTTTTT-TCCCACCAATTTTGTAAATTCTAAGTTCGTGCCTCAAAAGAGACAAACATGGATT
*
49591 CTAGTAAAGATCTTTATTCTTTTAGGGATTAGGCACTGTAAACACATTCTACTCATTAGGATAAA
452 CTAGTAAAGATCTTTATTCTTTTAGGGATTAGGCACTATAAACACATTCTACTCATTAGGATAAA
* * *
49656 TGATATTGATGGTTTT-TTCTTGCATGGAAATCTTTTATTTGCCTTATTTTCCTTAAAATCAATG
517 TGATATTGATGGTTTTCTT-TTGAATGGAAATCTTTTATTTGCCTTATTTTCCTTAAAAGCAAAG
49720 TTTATACTTTAAATGAGACAAGCATTGATT
581 TTTATACTTTAAATGAGACAAGCATTGATT
49750 GTTGTAATAG
Statistics
Matches: 568, Mismatches: 36, Indels: 11
0.92 0.06 0.02
Matches are distributed among these distances:
640 7 0.01
641 349 0.61
642 204 0.36
643 8 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (642 bp):
TGATTAGGCACTATAAACACATTCTCCTCATCAGCAGAATTGATATTGATGGTTTTCTTTGGCAT
GAAACTCTTTTATGTGCCCTATTTTCCTTAAAATCAAAGTTTGACTCTTAAATAAGACAAGCATT
GATTCCCGTAACAGTCTCCAATATTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGA
TACATCACATTGATGCTTTGGTGCCGCAAGAGAAGCTTCTTTTTTCCACCATTATTGATAGAATC
AAAGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCTATTCATTTCAAAATTA
GGCACCATAAACATAGTCTTCTGTTTAGGATACACGATATTGATGATTTGGTTTCGCAAGAAACG
CTTTTTTCCCACCAATTTTGTAAATTCTAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAG
TAAAGATCTTTATTCTTTTAGGGATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGAT
ATTGATGGTTTTCTTTTGAATGGAAATCTTTTATTTGCCTTATTTTCCTTAAAAGCAAAGTTTAT
ACTTTAAATGAGACAAGCATTGATTCTCGTAAAAGTCTCCATTCTTCACTCATTTCA
Found at i:52994 original size:476 final size:476
Alignment explanation
Indices: 50923--62508 Score: 13984
Period size: 476 Copynumber: 24.5 Consensus size: 476
50913 GATTTTGTTT
* * * * * * * *
50923 TCCATTCTTTCCAAGATTTGGAACCAAGAACACATTCCATTTATTAGAATACATGGCATTGATAC
1 TCCATTCTTTCTAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * *
50988 TTTGGTGTTGCAA-AAATAGCTTTTCTTTCCACCGTTATTGATAGAATTAAAGTTTTTCTCTTAA
66 TTTGGTGTCGCAAGAGA-AGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAA
* * * *
51052 ATAAGACAAACATGAATACTCATACTAATCCCCATTCTATTT-AGGATTAGACACCATCAACCTA
130 ATAAGACAAACATGAATACTCATACTAATCCCCATTCT-TTTCTGGATTAGGCACCATAAACATA
** * * * *
51116 CCCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCGCAAGAAAC-ATTTTCTTCCCACTA
194 GTCTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTT-TTCCCACCA
* * * *
51180 ATTTTTGAAAAGTCTATGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCAT
258 ATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCAT
* * * * *
51245 TTATTTCATGATTAGGCATTATAAACACATTCTCCTCATTAAGATAAATGATATTGATGATTTTG
323 TCATTTCATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTC
* * * * *
51310 TTTTGCATGAAAATCTTTTCTTTG-CTCTATTTTCCTTAAAATCAATGTTTG-ACCCTAAAATAA
388 TTTTGCATGGAAATCTTTTCTTTGCCT-TATTTTCCTTAAAATCAAAGTTTGTA-CTTTAAATGA
* * * *
51373 AACAAGCATTGATTCTCATAACAGTC
451 GACATGCATTGATTCTCGTAAAAGTC
* * * * * * *
51399 TCTACTCTTTCCAAGATTAGGAACCAAAAAAACATTCCCTTTATTAGGATACATGACAATGATGC
1 TCCATTCTTTCTAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * *
51464 ATTGGTGTCGCAAGA-ACAGCTTTTCTTTCCACCATTATTGATAGAATCAAAGTTTGACTCTTAA
66 TTTGGTGTCGCAAGAGA-AGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAA
* ** * **
51528 ATAAGACAAACATGAATACTCATAACTAATCCCCAATCTTTTAAGGATTAGGTACCATAAATGTA
130 ATAAGACAAACATGAATACTCAT-ACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATA
* * * **
51593 CTCTTCTCATAGGGATACATGATATTGATGCTTTGGTTTCATAAGAAACGCTTTCTTT-CCACCA
194 GTCTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTT-TTTCCCACCA
* * * * *
51657 ATTTTTGTAAAGTAC-AGGTTCGTTCCTCAAATGAGACAAACATGGATTTTAGTAGGGATCCTT-
258 ATTTTTGTAAA-TTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGAT-CTTC
** * * *
51720 ATTCATTTTGTGATTAGGCACTATAAACACATTCTGCTGATTAGGATAAATGATATTGATGATTT
321 ATTCATTTCATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTT
* * * * * * * *
51785 TGTTTTGCATAGAAATATTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTTG-ACCCTAAAATA
386 TCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTA-CTTTAAATG
* * *
51849 AGACAAGCATTGATTCTCATAACAGTC
450 AGACATGCATTGATTCTCGTAAAAGTC
* * * * * *
51876 TCCATCCTTTCCAAGATTGGGAACCAAGAACACCTTTCCTTTATTAGGATACATGACATTGATGC
1 TCCATTCTTTCTAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * *
51941 TTTGGTGTCGCAAGA-ACAGCTTTTCTTTCGACCATTATTGATAGAATTAAAGTTTGTCTCTAAA
66 TTTGGTGTCGCAAGAGA-AGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAA
* * * *
52005 ATATGAGAAACATGAATACTCATACTAATCCCCATTCTTTTC-AGATTACGCACCATAAACATAG
130 ATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAG
* * ** * *
52069 TCTTCTTATAATGATACATAATATTGATGCTTTGGTTTCAAAAGAAACACTTTTTTGCCCCCCAA
195 TCTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTTTT-CCCACCAA
* * *
52134 CTTTTGAAAAGTT-TAAGTTTGTGCCTCAAATGAGAC-AACTATGGATTCTAGTAAGGATCTTCA
259 TTTTTGTAAA-TTCTAAGTTCGTGCCTCAAATGAGACAAAC-ATGGATTCTAGTAAGGATCTTCA
* *
52197 TTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGTATAAATGATATTGATGGTTTT
322 TTCATTTCATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTT
** * * * * * * * * *
52262 CTTGGGCATGAAAATCCTTT-TTTGCCCTATTTTACTTAAAATCAGAGTTTGTCCCTTCAAT-AA
387 CTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAG
* * *
52325 AGCAAGCATTGATTCTTGTAACAGTC
452 A-CATGCATTGATTCTCGTAAAAGTC
** * *
52351 TCCATTCTTT-TCAA-ACTTAAGAACC-AAAACATATTCCCTTCGTTAGGATACATGACATTGAT
1 TCCATTCTTTCT-AAGA-TTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* *
52413 GCTTTGGTGTCGCAAAAGAAGCTTTTCTTTCCACCGTTATTGATAGAATTGAAA-TTTGTCTCTT
64 GCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAA-TCAAAGTTTGTCTCTT
52477 AAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACC-TCAAACA
128 AAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCAT-AAACA
* * * * * *
52541 TAGTCTTCTGATAAGAATACATGATATTGATGATTTGGTTTTGCAAGAAATGCTTTTTTCTCACC
192 TAGTCTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTTTTCCCACC
*
52606 AATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTTA
257 AATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCA
* * * * * *
52671 CTCAATGT-ATGATTAGGCAGTATAAATACATTCTCCTAATTACGATAAATGATATTGATGGTTT
322 TTC-ATTTCATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTT
*
52735 T-TATTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAATTCAAAGTTTGTACTTTAAATG
386 TCT-TTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATG
* *
52799 AGACATGCGTTGATTCTTGTAAAAGTC
450 AGACATGCATTGATTCTCGTAAAAGTC
* * *
52826 TCCATTCTTTCTAAGATTAGGAACCGAAAACACATTCCCTTCATTAAGATACATGACATTGATGC
1 TCCATTCTTTCTAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* ***
52891 TTTGGTGTCACAAGAGAAGCTTTTCTTTTTGCCGTTATTGATAGAATCAAAGTTTGTCTCTTAAA
66 TTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAA
* * * * *
52956 TATGAGAAACACGAATACTCATACAAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
131 TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGT
* * * * * * * **
53021 CTTCTCATAAGGATACACGATATTGATGCTTTGGCTTCG-ATAAAAATGCATTCTTCCCATTAAT
196 CTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCA-AGAAACGCTTTTTTCCCACCAAT
* * * * *
53085 TTTTG-AAATATCTAAGTTCATGCCTCAAATGAAACAAATATGGATTCTAATAAGGATCTTCACT
260 TTTTGTAAAT-TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATT
* * * * *
53149 AATTTCGTGATTAGGCACTGTAATCACATTCTCCTTATTAGGATAAATGATATTGATGGTTTTCT
324 CATTTCATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCT
* * * * * * * * * * * *
53214 TTGGCACGAAAATCTTTTCTATT-TCTTATCTTACTTAAAATCAAAGTTGGTCCCTTCAATAAGG
389 TTTGCATGGAAATCTTTTCT-TTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGA
** * *
53278 CAAACATTGATTCTTGTAATAGTC
453 CATGCATTGATTCTCGTAAAAGTC
* * ** * * * *
53302 TCCATTCTTT-TCAAAAGTAAGAACCAAAAAATACATTCCCTTCTTTAGAATACCA-GACGTTGA
1 TCCATTCTTTCT-AAGATTGGGAACC-AAAAACACATTCCCTTCATTAGGATA-CATGACATTGA
* * * *
53365 TGCTTTTGTGTCACAAGAGTAGCTTTT-TTTCCACTGTTATTGATAGAATCAAAGTTTGTCTCTT
63 TGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTT
* *
53429 AAATAAGACAAACACGAATACTCATACTAATCCCCATTCTTTT-TAGGATAAGGCACCATAAACA
128 AAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCT-GGATTAGGCACCATAAACA
* * * *
53493 TAGTCTCCTTATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACT
192 TAGTCTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTTTTCCCACC
* * * * * ** *
53558 GATTTTTGTAAAGTATGAGTTCATTTCTCAAATGAGACAAACATGGATTCTTGTAAGGATCTTCA
257 AATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCA
53623 TTCATTTCATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTT
322 TTCATTTCATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTT
53688 CTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAG
387 CTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAG
* *
53753 ACATGCATTGATTTTCGGAAAAGTC
452 ACATGCATTGATTCTCGTAAAAGTC
* *
53778 TCTATTCTTTCCAAGATTAGGGACCATTCTTTCCAAGATTGGGAACCAATGACACATTCCCTTCA
1 TCCATTCTTTCTAAGATT-GGGA--A------CC---------AA--AA--ACACATTCCCTTCA
* * * *
53843 TTAGGATACATGACATTGATGCTTTGGTGCCACAAGAGAAGCTTTTCTTTCCACCATTACTGATA
44 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATA
* * * * *
53908 AAATCAAAGTTTGTCTCTTAAATAAGACAAACACTAAATACTGATACTAGTCCCCATTCTTTTCA
109 GAATCAAAGTTTGTCTCTTAAATAAGACAAACA-TGAATACTCATACTAATCCCCATTCTTTTCT
* * * * * *
53973 GGATTAGGCACCATAAACATAGTTTTCTCATAAGGATACAAGATATTTATGATTTGGTTTCACAA
173 GGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAA
* * **
54038 G-AACACTTTTTTCCCACCAATTTTTTTAAATTCTAAGTTTATGCCTCAAATGAGACAAACATGG
238 GAAACGCTTTTTTCCCACCAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
* * * *
54102 ATTCTAGTAAGGATCTTCATTCATTTCTTGAATAGGGACTATACACACATTCTCCTCATTAGGAT
303 ATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
* * *
54167 AAATAATATTGATGGTTTTCTTTTGCATGGAAATATTTTCTTTGCCTTATTTTCCTTAAAATGAA
368 AAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAA
* * * *
54232 AGTTTGTACTTTGAATGACATATGCATTAATTCTCGTAAAAGTC
433 AGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTC
* * * *
54276 TCCATTCTTTCCAAAATTAGGAA-CAAAAACACATTCCCTTCATTAGGATACATGACAATGATGC
1 TCCATTCTTTCTAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * * * * * * *
54340 TCTGGTGTCGCCAGAGAAGCCTTTCTTCCCACCATTATTAAAAAAAT-TAAGTTTGTCTATTAAA
66 TTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAA
* * ** * *
54404 GAAGACAAACATGAATATTCATACTAATCCCCATTCTTTTCAAGATCA-CCACCATAAACATAGT
131 TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGT
* * * * * * * * *
54468 AC-TCTCATTAGGACACAGGATATTGAT-CATTTGGTTTCGCATGAAATGCTTTTTTCTCTCGAA
196 -CTTCTTATAAGGATACATGATATTGATGC-TTTGGTTTCGCAAGAAACGCTTTTTTCCCACCAA
* * * * *
54531 TTTTTGAAAATTCTAAGTTCGTACCTCAAATAAGACAAAAATAGATTCTAGTAAGGATCTTCATT
259 TTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATT
54596 CATTTCATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCT
324 CATTTCATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCT
* *
54661 TTTGCATGGAAATCTTTTCTTTGCCTCATTTTCCTTAAAATCAAAGTTTGTAATTTAAATGAGAC
389 TTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGAC
* *
54726 ATGCATTGATTATCATAAAAGTC
454 ATGCATTGATTCTCGTAAAAGTC
* * * * *
54749 TCCATTCTTTCAAAGAGTGGGAACTAAAAACACATTCCCTTCTTTAGGATACATGACATTGTTGC
1 TCCATTCTTTCTAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
** * *
54814 TTTGGTGTCATAAGAGAAGCTTTTCTTTCCACCGTTAATGATAAAATCAAAG-TT-TCTCTTAAA
66 TTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAA
** * *** *
54877 T-AGACAAACATGGGTACTAATACTAATCTAAATTCTTTTCTAGATTAGGCACCATAAACATAGT
131 TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGT
* * * * * *
54941 CCTCTCATAAGGATACAAGATATTGATGCGTTGGTTTCGCAAGAAAC-ATTTTCTTCCCACCAAG
196 CTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTT-TTCCCACCAAT
* * * ** * *
55005 TTTTGTAAAGTATAACTTTATTCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTTATTC
260 TTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTC
* *
55070 ATTTCGTGATTAGTCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGG-------
325 ATTTCATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTT
* * * *
55128 TT---T-----TCTTTTCTTTGCCTCATTTTCCTTAAAAGCAAAGTTTGCACTTTAAATTAGACA
390 TTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACA
55185 TGCATTGATTCTCGTAAAAGTC
455 TGCATTGATTCTCGTAAAAGTC
* * ** *
55207 TCCATTCTTTCCAAGATTGGGAACTAGGAACACATTCCCTTCATTAGGATACATGACTTTGATGC
1 TCCATTCTTTCTAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* ** * * *
55272 TTTGGTGTCGCAAGAGAAGTTTTTCTTTCCATAGTTAATGATAAAATCAATG-TT-TCTCTTAAA
66 TTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAA
* * * *** * * *
55335 TAAGACAAACATGGATAGTCATACAAATCTAAATTCTTTTGTGGATTA-CCATCATAAAC--AGT
131 TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGT
* * * *
55397 CTTCTCATAAGGATACAGGATATTGATGATTTGGTTTCGCAAGAAATTGC-TTTTTCCCACCAAT
196 CTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAA-CGCTTTTTTCCCACCAAT
* * * ** *
55461 TTTTGTAAAGTATAAGTTCGTTCCTCAAATGAGACAAACACAGATTCTAGT-AGCGATCTTCTTT
260 TTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAG-GATCTTCATT
55525 CATTTCATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCT
324 CATTTCATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCT
* *
55590 TTTGCATGGAAATCTTTTCTTTGCCTTACTTTCCTTAAAATC-AAGTTTGTACTTTGAATGAGAC
389 TTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGAC
55654 ATGCATTGATTCTCGTAAAAGTC
454 ATGCATTGATTCTCGTAAAAGTC
* * * * * *
55677 TCTATTCTTTCCAAAATTAGGAACCAAAAACACTTTCCCTTCATTAGGATACAAGACATTGATGC
1 TCCATTCTTTCTAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * *
55742 TTTGGTGTTGC-----AAG-----------A-CGCTATTCATACAATCAAAGTTTGTCTTTTAAA
66 TTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAA
* * *
55790 GAAGACAAACCTGAATACTCATACTAATCCCCATTCTTTTTTGGATTAGGCACCATAAACATAGT
131 TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGT
* * * * * *
55855 CTTCTTACATGGATACAGGATATTGATGATTTGGTTTCGCAAG-AACGTTTTTTTCCCA-TAATT
196 CTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTTTTCCCACCAATT
* * *
55918 TTTGTAAATTCTAAGTTCGTGCCTTAAATGAGACTAACATGGATTCTAGTAACGATCTTCATTCA
261 TTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCA
** * *
55983 TTTTGTGATTAGGCACTATAAACACATTTTCCTCATTAGGATAAATGATTTTGATGGTTTTCTTT
326 TTTCATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTT
*
56048 TGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAACTTTGTACTTTAAATGAGACAT
391 TGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAT
56113 GCATTGATTCTCGTAAAAGTC
456 GCATTGATTCTCGTAAAAGTC
*
56134 TCCATTCATTTC-AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGGCATTGATG
1 TCCATTC-TTTCTAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
* ** * * *
56198 CTTTGGTGTCGCAAGAGAAGCTGTTCTCCCCATCGTTATTGATAGAAGCAAAGTTTGTCGCTTAA
65 CTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAA
* * * *
56263 ATAAGACAAACATGAATAGTCATACTAATCCACGTTTTTTTCTGGATTAGGCACCATAAACATAG
130 ATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAG
* * * * * *
56328 TCTTCTCATAAGGATAAATGGTATTGATGCTTTGTTTTCGTAAGAAACGCTTTCTTCCCACCAAT
195 TCTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTTTTCCCACCAAT
* * * * * * * * * *
56393 TTTTGAAAAGTGTAAGTTCATTCCTCAATTGACACAAACAAGGATTCCAGTAAGGATCATCATTC
260 TTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTC
* * * * *
56458 ATTTCATGACTAGGCACTTTAAACACATTCTCCCCAATAGGATAAATGATATTGATAGTTTTCTT
325 ATTTCATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTT
* * * *
56523 TTGCCTGAAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACA
390 TTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACA
* *
56588 AGCATTGATTCTTGTAAAAGTC
455 TGCATTGATTCTCGTAAAAGTC
* *
56610 TCCATTCTTTCCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
1 TCCATTCTTTCTAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * *
56675 TTTGGTGTGGCAAGAGAAGCTTTTCTTTCCAACATTATTGATAAAATCAAAGTTTCTCTCTTAAA
66 TTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAA
* * * * *
56740 AAAGACAAACGTGAATACTCATACTAATCCCAATTC-TTTCAGGACTAGGCACCATAAACATAGT
131 TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGT
* * * * * * *
56804 CTTCTTATACGGATACAGGATATTGATGATTTGGTTTCGCTAGAAATGCCTTTTT-CCA-TAATT
196 CTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTTTTCCCACCAATT
* *
56867 TTTG-AAGATTCTATGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTC
261 TTTGTAA-ATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTC
* * **
56931 ATTTCGTGATTAGGCACTATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTT
325 ATTTCATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTT
* *
56996 TTGCATGAAAATCTTTTTTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACA
390 TTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACA
*
57061 TGCATTGATTCTCGCAAAAGTC
455 TGCATTGATTCTCGTAAAAGTC
* * * *
57083 TCTATTCTTTTTAAGATTGGGAACTAAAAACACATTCCCATCATTAGGATACATGACATTGATGC
1 TCCATTCTTTCTAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * *
57148 TTTGGTGTTGC-A-AG-A-----------CA---TTATTCATAAAATCAAAGTTTATCTTTTAAA
66 TTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAA
* * * *
57196 TAAGACAAACTTAAATACTCATACTAATCCCCATTCCTTTCTGGATTAGGCACCATAAACATACT
131 TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGT
* * * * * *
57261 CTTCTTATACGGATACAGGATATTGATGATTTGGTTTTGCAAAAAACGCTTTTTTCCCA-TAATT
196 CTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTTTTCCCACCAATT
* *
57325 TTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCGTCATTCG
261 TTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCA
* * *
57390 TTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAAATTGATGGTTTTCTTC
326 TTTCATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTT
* * * * *
57455 TACATAGAAATCTTTTCTTTGCCTCATTTTCCTTAAAATCAAAGTTTCTACTTTAATTGAGACAT
391 TGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAT
57520 GCATTGATTCTCGTAAAAGTC
456 GCATTGATTCTCGTAAAAGTC
* * * * * * * * *
57541 TCAATTCTTTCTAATATTGGGATCCAAGAACATATTCCCTTTATTACGATACATGACAATAATGC
1 TCCATTCTTTCTAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * ** * * * *
57606 TTTGGTGCCACAAGAGAATATTTTCTTTCCACTGTTATTGATAGAATCAAAGTTTATGTTTTAAA
66 TTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAA
* * * * *
57671 TAAGATAAACATGAATACTCATACTAATCCACATTCTTGTCTGGATTAGGCACCGTAAACATTGT
131 TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGT
* *
57736 CTTCTAATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACG-TTTTCTTCCCTCCAAT
196 CTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTT-TTCCCACCAAT
* * * * *
57800 TTTCGTAAATTCTAATTTCGCGCCTCAAATGAGACAAACATGGATTTTAGTAAGGATTTTCATTC
260 TTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTC
* * * *
57865 ATTTCATGATTAGGCACTATAAA-ACATTCTCCACATTAGGATAAATGATACTGATGCTTTTTTT
325 ATTTCATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG--GTTTTC
* * *
57929 TTTTGCAAGAAAATCTTTTCTATGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGA
388 TTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGA
* *
57994 CATGCATTGATTCTCATAAAAGTT
453 CATGCATTGATTCTCGTAAAAGTC
* *
58018 TCCATTCTTT-TCAAGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATG
1 TCCATTCTTTCT-AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * * *
58082 CTTTAGG-GCCGCAAGAAAAGGTTTTC-TTCCTACCGTTACTGATAGAATCACAG-TTGTCTCTT
65 CTTT-GGTGTCGCAAGAGAAGCTTTTCTTTCC-ACCGTTATTGATAGAATCAAAGTTTGTCTCTT
* * *
58144 AAATAAGACAAACTTGAATACTCACACTAAT-CCCATTCTTTTCAGGATTAGGCACCATAAACAT
128 AAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACAT
* * * * * ** * *
58208 AATCTTCTCATTAGGATACATGATACTGATGCTTTGGTTTCGCAAGATACGCTTTCATCCCGCCT
193 AGTCTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTTTTCCCACCA
* * * * * * *
58273 ATTTTTGCAAAGTATAAGTTCATTCCTCAAATTAGACAAACATGGATTCTAGTAAGGATCTTCGT
258 ATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCAT
**
58338 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTC
323 TCATTTCATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTC
* * ** *
58403 TTTTGCATGAAAATCTTTTTTTTGCCTCGTTTTCCTTAAAATCAAAGTTTGTACTTTAATTGAGA
388 TTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGA
*
58468 CATGCATTGATTCTCATAAAAGTC
453 CATGCATTGATTCTCGTAAAAGTC
* * *
58492 TCCATTCTTTCTAATATTGGGAACCAAGAACACATTCCCTTTATTAGGATACATGACATTGATGC
1 TCCATTCTTTCTAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* *
58557 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTATTGATAGAATCAAAGTTTGTCTCTTAAA
66 TTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAA
* * * * *
58622 TAAGAAAAACATAAATACTCATACTAATCCACATTCTTTTCTAGATTAGGCACCATAAACTTAGT
131 TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGT
* * * *
58687 CTTCTAATAAGGATACATGATATTGATGCTTTGG-TTCTGCAAGAAACACTTTCTTCCCCCCAAT
196 CTTCTTATAAGGATACATGATATTGATGCTTTGGTTTC-GCAAGAAACGCTTTTTTCCCACCAAT
* * * * * * * *
58751 TTTTGTAAACTCTAAATTCGTGTCTTAAATGAGACAAGCATTGATTGTAGTAAGGATCTTCACTC
260 TTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTC
* **
58816 ATTTCATGATTAGGCACTATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTT
325 ATTTCATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTT
* * *
58881 TTGCATAGAAATCTTTTCTTTGCCTTATTTTCCCTAAAATCAAAGTTTGTACTTTAAATGCGACA
390 TTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACA
58946 TGCATTGATTCTCGTAAAAGTC
455 TGCATTGATTCTCGTAAAAGTC
* *
58968 TCCATTCTTT-TCAAGATTGGGAACCCAAAACACATTCCCTTCATTAAGATACATGACATTGATG
1 TCCATTCTTTCT-AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * * * *
59032 CTTTGGTGTCACAAGA-AAGGGTTTTCTTTCCAACGTTATCGATAAAATCAAAATTTGTCTCTTA
65 CTTTGGTGTCGCAAGAGAA-GCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTA
* * *
59096 AATAAGACAAACTTGAATACTCATACTAAT-CCCATTCTTTTCAGGATTAGGCACCATAAACATT
129 AATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATA
* * * *
59160 GTCTTCTTATACGGATACAGGATATTGATGATTTGGTTTCGCAAGAAACGCTTTTTTCCCA-TAA
194 GTCTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTTTTCCCACCAA
*
59224 TTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCGTCATT
259 TTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATT
* * * *
59289 CGTTTCGTGATTAGGCACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATTGTTTTCT
324 CATTTCATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCT
* * * * *
59354 TTTGCATGGAAATCGTTTCTTTGACTTGTTTTCCTTAAAATCAAAGTTTGCACTTTAAATGAGAT
389 TTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGAC
* * *
59419 AAGCATTGATTCCCATAAAAGTC
454 ATGCATTGATTCTCGTAAAAGTC
* * * *
59442 TCTATTCTTT-TCAAGATT-GGAAGCCAAAAACACATTCCCTTCATTAAGATACAAGACATTGAC
1 TCCATTCTTTCT-AAGATTGGGAA-CCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* ** *
59505 GCTTTGGTGTCACAAGAGAAG-TTGTTCTCCCCACCGTTATTAATAGAATCAAAGTTTGTCTCTT
64 GCTTTGGTGTCGCAAGAGAAGCTT-TTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTT
* * *
59569 AAATAAGACAAACATGAA-ACTTATGCTAATCCCCGTTCTTTT-TAGGATTAGGCACCATAAACA
128 AAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCT-GGATTAGGCACCATAAACA
* * * * * * *
59632 TAGTCTTCTTAGATGGATACAGGATATTGATGATTTGGTTTCGCAAAAAATGC--TTTTCCCA-T
192 TAGTCTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTTTTCCCACC
* * * * *
59694 AAATTTTGTAAATTATAAATTTGTGCTTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCA
257 AATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCA
** *
59759 TTCATTTTGTGATTAGGCACTATAAACAC-TT-TCCTTATTAGGATAAATGATATTGATGGTTTT
322 TTCATTTCATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTT
* * *
59822 CTTTTGCATGGAAAT-ATTTCTTTGCCTTGTTTTCCGTAAAATCAAAGTTTGTACTTTAAATGAG
387 CTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAG
59886 ACATGCATTGATTC-CAGTAAAAGTC
452 ACATGCATTGATTCTC-GTAAAAGTC
* * *
59911 TCCATTCTTT-TCAAGATTGGCAACCAAAACCACATTCCCTTCATTTGGATACATGACATTGATG
1 TCCATTCTTTCT-AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * ** * * * *
59975 CTTTGGTGTCACAAGAAAAGCTGTTCTCCCCATCGTTATTAATAGAATCAAAGTTTGCCGCTTAA
65 CTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAA
* * * * *
60040 ATAAGACAAACCTAAATAGTCATACTAATCCACATTCTTTTTTGGATTAGGCACCATAAACATAG
130 ATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAG
* ** *
60105 TCTTCTTATAAGGATACATCATATTGATGCTTTGGTTTCGTGAGAAACGCTTTTTTCCCACCAAG
195 TCTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTTTTCCCACCAAT
* * * * * * *
60170 TTTTGTAAAGTATAAGTTCATTCCTCAAATGAGACAAACAAGGATTCTAGTAACGATTTTCATTC
260 TTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTC
* *
60235 ATTTCATGATTAGGCACTATAAACACATTCTCCCCCA-TAGCATAAATGATATTGATGGTTTTCT
325 ATTTCATGATTAGGCACTATAAACACATTCT-CCTCATTAGGATAAATGATATTGATGGTTTTCT
* * *
60299 TTTGCCTGGAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGAC
389 TTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGAC
* *
60364 AAGCATTGATTCTCATAAAAGTC
454 ATGCATTGATTCTCGTAAAAGTC
* *
60387 TCCATTCTTTCCAAGATTGGGAACCAAAAACACATTCCCTTGATTAGGATACATGACATTGATGC
1 TCCATTCTTTCTAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * *
60452 CTTGGTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTATTGATAAAATCAAAGTTTGTCTCTTAAA
66 TTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAA
** * * **
60517 TAAGACAAATTTGAATACTCATACAAATCACCATTCTTTTCAAGATTAGGCACCATAAACATAGT
131 TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGT
* * * * *
60582 CTTCTTATACGGATACAGGATATTGATGTTTTGGTTTCGCTAGAAATGCTTTTTTCCCA-CAATT
196 CTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTTTTCCCACCAATT
* * * * * *
60646 TTTGTAGATTTTAAGTTCGGGCTTCAAATAAGACAAACATGGATTATAGTAAGGATCTTCATTCA
261 TTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCA
* ** *
60711 TTTCATGATTAGGCACTATAAACACATTCTCCTCATCCA-GATGCATGATATTGATGGTTTTGTT
326 TTTCATGATTAGGCACTATAAACACATTCTCCTCAT-TAGGATAAATGATATTGATGGTTTTCTT
* * *
60775 TTACATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATTAAAGTTTGTACTTTAAATGAGACA
390 TTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACA
60840 TGCATTGATTCTCGTAAAAGTC
455 TGCATTGATTCTCGTAAAAGTC
* * * * *
60862 TCCTTTCTTTTTGAGACTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACAATGATGC
1 TCCATTCTTTCTAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * * *
60927 TTTGCTGTTGCAAAAGAACCTTGTCTTTCCACCGTTATTGATAGAATTAAAGTTTGTCTCTTAAA
66 TTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAA
* * ** *
60992 TAAGATAAACATAAATACTCATACTAATCGACATTCTTTTCTGGATTAGCCACCATAAACATAGT
131 TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGT
** *
61057 CTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGTGAGAAACGCTTTTTTCCCACCAAGT
196 CTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTTTTCCCACCAATT
* * * * * * *
61122 TTTGTAAAGTATAAGTTCATTCCTCAAATGAGAGAAACAAGGATTCTAGT-AGCGATTTTCATTC
261 TTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAG-GATCTTCATTC
* *
61186 ATTTCATGATTAGGCACTATAAACACATTCTCCCCCA-TAGAATAAATGATATTGATGGTTTTCT
325 ATTTCATGATTAGGCACTATAAACACATTCT-CCTCATTAGGATAAATGATATTGATGGTTTTCT
* * *
61250 TTTGCCTGGAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGAC
389 TTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGAC
* *
61315 AAGCATTGATTCTCATAAAAGTC
454 ATGCATTGATTCTCGTAAAAGTC
* * *
61338 TCCATTCTTTCCAAGATTGGGAACCAAAAACACATTCTCTTGATTAGGATACATGACATTGATGC
1 TCCATTCTTTCTAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * *
61403 CTTGGTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTATTGATAAAATCAAAGTTTGTCTTTTAAA
66 TTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAA
** * * * **
61468 TAAGACAAATTTGAATACTCATACAAATCACCATTTTTTTCAAGATTAGGCACCATAAACATAGT
131 TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGT
* * * * *
61533 CTTCTTATACGGATACAAGATATTGATGTTTTGGTTTCGCTAGAAATGCTTTTTTCCCA-CAATT
196 CTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTTTTCCCACCAATT
* * * *
61597 TTTGTAGATTTTAAGTTCGGGCCTCAAATGAGACAAACATGGATTATAGTAAGGATCTTCATTCA
261 TTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCA
** ** *
61662 TTTCATGATTAGGCACTATAAACACATTCTCCTCATCCGGATGCATGATATTGATGGTTTTGTTT
326 TTTCATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTT
* * * *
61727 TACATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATTAAAATTTGTACTTTAAATGAGACAT
391 TGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAT
*
61792 GCATTGATTCTTGTAAAAGTC
456 GCATTGATTCTCGTAAAAGTC
** * * * * *
61813 TCTTTTCTTTTTGAGACTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACAATGATGC
1 TCCATTCTTTCTAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * * *
61878 TTTGCTGTTGCAAAAGAAGCTTGTCTTTCCACCGTTATTGATAGAATTAAAGTTTATCTCTTAAA
66 TTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAA
* * * **
61943 TAAGATAAACATAAATACTCTTACTAATCGACATTCTTTTCTGGATTAGGCACCATAAACATAGT
131 TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGT
* * * * * * * * *
62008 ATTCTCATAAGGATAAATAATATTGATACTTTGGTTTGGCAAAAAATGCTTTCTTCCCACCAATT
196 CTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTTTTCCCACCAATT
* * * * * **
62073 TTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACAGGGATTCTAGCAATGATCTTCATTTG
261 TTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCA
** *
62138 TTTTGTGATTAGGCGCTATAAACACATTCTCCTCATT-GGCATAAATGATATTGATGGTTTTCTT
326 TTTCATGATTAGGCACTATAAACACATTCTCCTCATTAGG-ATAAATGATATTGATGGTTTTCTT
* * * * * * * * * *
62202 TGGCACGAAAATCTTTTCTTTTCCCTATTTTACTTAAAATCAAAGTTTGTCCCTTCAAT-AGGGC
390 TTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGA-GAC
* * *
62266 AAGCATTGATTCTTGTAACAGTC
454 ATGCATTGATTCTCGTAAAAGTC
* * * * * *
62289 TCCATTCTTT-TCAAAATTGGGAACCAAGAACACATTCCCTTTATTACGACACAAGACATTGATG
1 TCCATTCTTTCT-AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
* *
62353 CTTTGGCGTCACAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAA
65 CTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAA
* * * * * *
62418 ATATGGCAAACATGAATGCCCATACTAATCCACATTTTTTTTCTGGATTAGGCACCATAAACATA
130 ATAAGACAAACATGAATACTCATACTAATCCCCA-TTCTTTTCTGGATTAGGCACCATAAACATA
62483 GTCTT-TTGATAAGGATACATGATATT
194 GTCTTCTT-ATAAGGATACATGATATT
62509 TGTTAGGATC
Statistics
Matches: 9581, Mismatches: 1330, Indels: 397
0.85 0.12 0.04
Matches are distributed among these distances:
453 14 0.00
454 3 0.00
455 49 0.01
456 394 0.04
457 197 0.02
458 507 0.05
459 45 0.00
460 2 0.00
461 1 0.00
462 3 0.00
463 3 0.00
465 3 0.00
466 3 0.00
468 1 0.00
469 190 0.02
470 239 0.02
471 32 0.00
472 198 0.02
473 801 0.08
474 1070 0.11
475 1766 0.18
476 2925 0.31
477 696 0.07
478 14 0.00
479 4 0.00
485 2 0.00
488 1 0.00
493 2 0.00
495 3 0.00
496 2 0.00
497 53 0.01
498 275 0.03
499 83 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (476 bp):
TCCATTCTTTCTAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
TTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAA
TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGT
CTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTTTTCCCACCAATT
TTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCA
TTTCATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTT
TGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAT
GCATTGATTCTCGTAAAAGTC
Found at i:53825 original size:22 final size:22
Alignment explanation
Indices: 53781--53821 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
53771 AAAAGTCTCT
53781 ATTCTTTCCAAGATTAGGGACC
1 ATTCTTTCCAAGATTAGGGACC
53803 ATTCTTTCCAAGATT-GGGA
1 ATTCTTTCCAAGATTAGGGA
53822 ACCAATGACA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (22 bp):
ATTCTTTCCAAGATTAGGGACC
Found at i:56727 original size:159 final size:154
Alignment explanation
Indices: 55865--61908 Score: 1265
Period size: 159 Copynumber: 38.3 Consensus size: 154
55855 CTTCTTACAT
* * * * *
55865 GGATACAGGATATTGATGATTTGGT-TTCGCAAGAACG-TTTTTTTCCCATAATTTTTG-TAAAT
1 GGATACATGACATTGATGCTTTGGTGTT-GCAAGAAAGCTTTTTTT-CCA-AA-TTTTGATAAAA
* * * * * * * * * **
55927 TCTAAGTTCGTGCCTTAAATGAGACTAACATGGATTCTAGT-AACGATCTTCATTCATTTTGTGA
62 TCAAAGTTTGTACTTTAAATGAGACAAACATTGATTCTCGTAAAAG-TCTCCATTC-TTTCATGA
* * * *
55991 TTAGGCACTATAAACACATTTTCC-TCATTA
125 TTAGGAACCAAAAACACA-TTCCCTTCATTA
* ** * ** * * * ** **
56021 GGATAAATGATTTTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAA
1 GGATACATGACATTGATGCTTTGGTGTTGCA-AGAAAGCTTTT-TTT-CCAAATTTT-GATAAAA
* ** *
56086 TCAAACTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCATTTCAAGAT
62 TCAAAGTTTGTACTTTAAATGAGACAAACATTGATTCTCGTAAAAGTCTCCATTC-TTTCATGAT
*
56151 TGGGAACCAAAAACACATTCCCTTCATTA
126 TAGGAACCAAAAACACATTCCCTTCATTA
* * * ** ** *
56180 GGATACATGGCATTGATGCTTTGGTGTCGCAAGAGAAGCTGTTCTCCCCATCGTTATTGATAGAA
1 GGATACATGACATTGATGCTTTGGTGTTGCAAGA-AAGCT-TTTTTTCCA-AATT-TTGATAAAA
* * * ** * * * *
56245 GCAAAGTTTGT-CGCTTAAATAAGACAAACA-TGAATAGTCATACTAA-TC-CACGTTTTTTTC-
62 TCAAAGTTTGTAC-TTTAAATGAGACAAACATTG-ATTCTCGTA-AAAGTCTC-C-ATTCTTTCA
* * * * * *
56305 TGGATTAGGCACCATAAACATAGT-CTTCTCATAA
122 T-GATTAGGAACCAAAAACACATTCCCT-TCATTA
* ** * * * *
56339 GGATAAATGGTATTGATGCTTT-GTTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGA-AAA
1 GGATACATGACATTGATGCTTTGGTGTT-GCAAGAAA-GCTTTTTTTCCA--AA-TTTTGATAAA
* ** ** * * * * * ** *
56402 GTGTAAGTTCATTCCTCAATTGACACAAACAAGGATTC-CAGT-AAGGATCAT-CATTCATTTCA
61 ATCAAAGTTTGTACTTTAAATGAGACAAACATTGATTCTC-GTAAAAG-TC-TCCATTC-TTTCA
* * *** * *
56464 TGACTAGGCACTTTAAACACATTCTCC-CCAATA
122 TGATTAGGAACCAAAAACACATTC-CCTTCATTA
* * ** * ** * * * ***
56497 GGATAAATGATATTGATAG-TTTTCTTTTGCCTGAAAATCTTTTCTTTGCCTCACTTTCCTTAAA
1 GGATACATGACATTGAT-GCTTTGGTGTTGCAAG-AAAGCTTTT-TTT-CC-AAATTTTGATAAA
* *
56561 ATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTTGTAAAAGTCTCCATTCTTTCCATGA
61 ATCAAAGTTTGTACTTTAAATGAGACAAACATTGATTCTCGTAAAAGTCTCCATTCTTT-CATGA
*
56626 TTGGGAACCAAAAACACATTCCCTTCATTA
125 TTAGGAACCAAAAACACATTCCCTTCATTA
*
56656 GGATACATGACATTGATGCTTTGGTGTGGCAAGAGAAGCTTTTCTTTCCAACATTATTGATAAAA
1 GGATACATGACATTGATGCTTTGGTGTTGCAAGA-AAGCTTTT-TTTCCAA-ATT-TTGATAAAA
* ** * * * * *
56721 TCAAAGTTTCT-CTCTTAAAAAAGACAAAC-GTGAATACTCATACTAA-TC-CCAATTCTTTCAG
62 TCAAAGTTTGTACT-TTAAATGAGACAAACATTG-ATTCTCGTA-AAAGTCTCC-ATTCTTTCAT
* * * * * *
56782 GACTAGGCACCATAAACATAGT--CTTCTTATA
123 GATTAGGAACCAAAAACACATTCCCTTCAT-TA
* * * * * *
56813 CGGATACAGGATATTGATGATTTGGT-TTCGCTAGAAATGC-CTTTTTCCATAATTTTTGA-AGA
1 -GGATACATGACATTGATGCTTTGGTGTT-GCAAGAAA-GCTTTTTTTCCA-AA-TTTTGATAAA
* * * ** * * * * * * * *
56875 TTCTATGTTCATGCCTCAAATGAGACAAACATGGATTCTAGT-AAGGATCTTCATTCATTTCGTG
61 ATCAAAGTTTGTACTTTAAATGAGACAAACATTGATTCTCGTAAAAG-TCTCCATTC-TTTCATG
* * * *
56939 ATTAGGCACTATAAACACATTCTCC-TCATCA
124 ATTAGGAACCAAAAACACATTC-CCTTCATTA
* * * ** * * * ** **
56970 GGATGCATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTTTTTGCCTTATTTTCCTTAAAA
1 GGATACATGACATTGATGCTTTGGTGTTGCAAG-AAAGC-TTTTTTT-CCAAATTTT-GATAAAA
** * * * *
57035 TCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGCAAAAGTCTCTATTCTTTTTAAGAT
62 TCAAAGTTTGTACTTTAAATGAGACAAACATTGATTCTCGTAAAAGTCTCCATTC-TTTCATGAT
* * *
57100 TGGGAACTAAAAACACATTCCCATCATTA
126 TAGGAACCAAAAACACATTCCCTTCATTA
* *
57129 GGATACATGACATTGATGCTTTGGTGTTGCAAG--A-C----ATT----A--TTCATAAAATCAA
1 GGATACATGACATTGATGCTTTGGTGTTGCAAGAAAGCTTTTTTTCCAAATTTTGATAAAATCAA
* * * * * * *
57181 AGTTTAT-CTTTTAAATAAGACAAAC-TTAAATACTCATACTAA-TCCCCATTCCTTTC-TGGAT
66 AGTTTGTAC-TTTAAATGAGACAAACATT-GATTCTCGTA-AAAGTCTCCATT-CTTTCAT-GAT
* * * * *
57242 TAGGCACC-ATAA-ACATACTCTTCTTATA
126 TAGGAACCAAAAACACATTCCCTTCAT-TA
* * * * * * *
57270 CGGATACAGGATATTGATGATTTGGTTTTGCAAAAAACGCTTTTTTCCCATAATTTTTG-TAAAT
1 -GGATACATGACATTGATGCTTTGGTGTTGCAAGAAA-GCTTTTTTTCCA-AA-TTTTGATAAAA
* * * * * * * * *
57334 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT-AAGGATCGT-CATTCGTTTCGTG
62 TCAAAGTTTGTACTTTAAATGAGACAAACATTGATTCTCGTAAAAG-TC-TCCATTC-TTTCATG
* * *
57397 ATTAGGCACTATAAACACATTCTCC-TCATTA
124 ATTAGGAACCAAAAACACATTC-CCTTCATTA
* * * ** * * ** **
57428 GGATAAATGAAATTGATGGTTTTCT-TCTACATAGAAATCTTTTCTTTGCCTCATTTTCCTTAAA
1 GGATACATGACATTGATGCTTTGGTGT-TGCA-AGAAAGCTTTT-TTT-CCAAATTTT-GATAAA
* * ** *
57492 ATCAAAGTTTCTACTTTAATTGAGACATGCATTGATTCTCGTAAAAGTCTCAATTCTTTCTAAT-
61 ATCAAAGTTTGTACTTTAAATGAGACAAACATTGATTCTCGTAAAAGTCTCCATTCTTTC--ATG
* * * * *
57556 ATTGGGATCCAAGAACATATTCCCTTTATTA
124 ATTAGGAACCAAAAACACATTCCCTTCATTA
* * * *** ** ** *
57587 CGATACATGACAATAATGCTTTGGTGCCACAAGAGAATATTTTCTTTCCACTGTTATTGATAGAA
1 GGATACATGACATTGATGCTTTGGTGTTGCAAGA-AAGCTTTT-TTTCCA-AATT-TTGATAAAA
* ** * * * * *
57652 TCAAAGTTTATGTTTTAAATAAGATAAACA-TGAATACTCATACTAA-TC-CACATTCTTGTC-T
62 TCAAAGTTTGTACTTTAAATGAGACAAACATTG-ATTCTCGTA-AAAGTCTC-CATTCTT-TCAT
* ** ** *
57713 GGATTAGGCACC-GTAA-ACATTGTCTTCTAATAA
123 -GATTAGGAACCAAAAACACATTCCCTTC--ATTA
*
57746 GGATACATGATATTGATGCTTTGGT-TTCGCAAGAAA-CGTTTTCTTCCCTCC-AATTTTCG-TA
1 GGATACATGACATTGATGCTTTGGTGTT-GCAAGAAAGC-TTTT-TT---TCCAAATTTT-GATA
* * ** * * * * * * * *
57807 AATTCTAA-TTTCGCGCCTCAAATGAGACAAACATGGATTTTAGT-AAGGATTTTCATTCATTTC
59 AAATCAAAGTTT-GTACTTTAAATGAGACAAACATTGATTCTCGTAAAAG-TCTCCATTC-TTTC
* * * *
57870 ATGATTAGGCACTATAAA-ACATTCTCC-ACATTA
121 ATGATTAGGAACCAAAAACACATTC-CCTTCATTA
* * * ** * * * ** **
57903 GGATAAATGATACTGATGCTTTTTTTTTTTGCAAGAAAATCTTTTCTATGCCTTATTTTCCTTAA
1 GGATACATGACATTGATGC--TTTGGTGTTGCAAG-AAAGCTTTT-T-TTCCAAATTTT-GATAA
** * * *
57968 AATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCATAAAAGTTTCCATTCTTTTCAAG
60 AATCAAAGTTTGTACTTTAAATGAGACAAACATTGATTCTCGTAAAAGTCTCCATTC-TTTCATG
*
58033 ATTAGGAACCAAAAACACATTCCTTTCATTA
124 ATTAGGAACCAAAAACACATTCCCTTCATTA
** * * ** * *
58064 GGATACATGACATTGATGCTTTAGG-GCCGCAAGAAAAGGTTTTCTTCCTACCGTTACTGATAGA
1 GGATACATGACATTGATGCTTT-GGTGTTGCAAG-AAAGCTTTTTTTCC-A-AATT-TTGATAAA
* * * ** *
58128 ATCACAG-TTGT-CTCTTAAATAAGACAAAC-TTGAATACTCACACTAA-TC-CCATTCTTTTCA
61 ATCAAAGTTTGTACT-TTAAATGAGACAAACATTG-ATTCTCGTA-AAAGTCTCCATTC-TTTCA
* * * * * *
58188 GGATTAGGCACCATAAACATAAT-CTTCTCATTA
122 TGATTAGGAACCAAAAACACATTCCCT-TCATTA
* * * *** * * *
58221 GGATACATGATACTGATGCTTTGGT-TTCGCAAGATACGCTTTCATCCCGCCTATTTTTG-CAAA
1 GGATACATGACATTGATGCTTTGGTGTT-GCAAGA-AAGCTTT--T-TTTCCAAATTTTGATAAA
* ** * * * * * * * * * **
58284 GT-ATAAGTTCATTCCTCAAATTAGACAAACATGGATTCTAGT-AAGGATCTTCGTTCATTTTGT
61 ATCA-AAGTTTGTACTTTAAATGAGACAAACATTGATTCTCGTAAAAG-TCTCCATTC-TTTCAT
* * *
58347 GATTAGGCACTATAAACACATTCTCC-TCATTA
123 GATTAGGAACCAAAAACACATTC-CCTTCATTA
* * * ** * * * *** **
58379 GGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTTTTTGCCTCGTTTTCCTTAAAA
1 GGATACATGACATTGATGCTTTGGTGTTGCAAG-AAAGC-TTTTTTT-CCAAATTTT-GATAAAA
* ** *
58444 TCAAAGTTTGTACTTTAATTGAGACATGCATTGATTCTCATAAAAGTCTCCATTCTTTCTAAT-A
62 TCAAAGTTTGTACTTTAAATGAGACAAACATTGATTCTCGTAAAAGTCTCCATTCTTTC--ATGA
* * *
58508 TTGGGAACCAAGAACACATTCCCTTTATTA
125 TTAGGAACCAAAAACACATTCCCTTCATTA
* * *
58538 GGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTATTGATAGAA
1 GGATACATGACATTGATGCTTTGGTGTTGCAAG-AAAGCTTTT-TTTCCA-AATT-TTGATAAAA
* * ** * * *
58603 TCAAAGTTTGT-CTCTTAAATAAGAAAAACATAAATACTCATACTAA-TC-CACATTCTTTTC-T
62 TCAAAGTTTGTACT-TTAAATGAGACAAACATTGATTCTCGTA-AAAGTCTC-CATTC-TTTCAT
* * ** * *
58664 AGATTAGGCACCATAAACTTAGT--CTTCTAATAA
123 -GATTAGGAACCAAAAACACATTCCCTTC--ATTA
* * ** *
58697 GGATACATGATATTGATGCTTTGGT-TCTGCAAGAAACACTTTCTTCCCCCCAATTTTTG-TAAA
1 GGATACATGACATTGATGCTTTGGTGT-TGCAAGAAA-GCTTT-TT--TTCCAAATTTTGATAAA
* * * * * * *
58760 CTCTAAA-TTCGTGT-C-TTAAATGAGACAAGCATTGATTGTAGT-AAGGATCTTCACTCATTTC
61 ATC-AAAGTT--TGTACTTTAAATGAGACAAACATTGATTCTCGTAAAAG-TCTCCATTC-TTTC
* * * *
58821 ATGATTAGGCACTATAAACACATTCTCC-TCATCA
121 ATGATTAGGAACCAAAAACACATTC-CCTTCATTA
* * * ** * * ** **
58855 GGATGCATGATATTGATGGTTTTCTTTTGCATAGAAATCTTTTCTTTGCCTTATTTTCCCTAAAA
1 GGATACATGACATTGATGCTTTGGTGTTGCA-AGAAAGCTTTT-TTT-CCAAATTTT-GATAAAA
* ** *
58920 TCAAAGTTTGTACTTTAAATGCGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTTCAAGAT
62 TCAAAGTTTGTACTTTAAATGAGACAAACATTGATTCTCGTAAAAGTCTCCATTC-TTTCATGAT
* *
58985 TGGGAACCCAAAACACATTCCCTTCATTA
126 TAGGAACCAAAAACACATTCCCTTCATTA
* ** * * *
59014 AGATACATGACATTGATGCTTTGGTGTCACAAGAAAGGGTTTTCTTTCCAACGTTATCGATAAAA
1 GGATACATGACATTGATGCTTTGGTGTTGCAAGAAA-GCTTTT-TTTCCAA-ATT-TTGATAAAA
* * * * * *
59079 TCAAAATTTGT-CTCTTAAATAAGACAAAC-TTGAATACTCATACTAA-TC-CCATTCTTTTCAG
62 TCAAAGTTTGTACT-TTAAATGAGACAAACATTG-ATTCTCGTA-AAAGTCTCCATTC-TTTCAT
* * ** *
59140 GATTAGGCACC-ATAA-ACATTGTCTTCTTATA
123 GATTAGGAACCAAAAACACATTCCCTTCAT-TA
* * * *
59171 CGGATACAGGATATTGATGATTTGGT-TTCGCAAGAAACGCTTTTTTCCCATAATTTTTG-TAAA
1 -GGATACATGACATTGATGCTTTGGTGTT-GCAAGAAA-GCTTTTTTTCCA-AA-TTTTGATAAA
* * * * * * * * * *
59234 TTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT-AAGGATCGT-CATTCGTTTCGT
61 ATCAAAGTTTGTACTTTAAATGAGACAAACATTGATTCTCGTAAAAG-TC-TCCATTC-TTTCAT
* * * *
59297 GATTAGGCACTATAAACACATTCTCTTCATTA
123 GATTAGGAACCAAAAACACATTCCCTTCATTA
* * ** * * * ** *** **
59329 GGATAAATGATATTGATTG-TTTTCTTTTGCATGGAAATCGTTTCTTTGACTTGTTTTCCTTAAA
1 GGATACATGACATTGA-TGCTTTGGTGTTGCA-AGAAAGC-TTT-TTTTCCAAATTTT-GATAAA
* * * * * * *
59393 ATCAAAGTTTGCACTTTAAATGAGATAAGCATTGATTCCCATAAAAGTCTCTATTCTTTTCAAGA
61 ATCAAAGTTTGTACTTTAAATGAGACAAACATTGATTCTCGTAAAAGTCTCCATTC-TTTCATGA
59458 TT-GGAAGCCAAAAACACATTCCCTTCATTA
125 TTAGGAA-CCAAAAACACATTCCCTTCATTA
* * * ** ** ** * *
59488 AGATACAAGACATTGACGCTTTGGTGTCACAAGAGAAG-TTGTTCTCCCCACCGTTATTAATAGA
1 GGATACATGACATTGATGCTTTGGTGTTGCAAGA-AAGCTT-TT-TTTCCA-AATT-TTGATAAA
* ** ** ** * * * *
59552 ATCAAAGTTTGT-CTCTTAAATAAGACAAACA-TGAAACTTATGCTAA-TCCCCGTTCTTTTTAG
61 ATCAAAGTTTGTACT-TTAAATGAGACAAACATTGATTCTCGT-AAAAGTCTCCATTC-TTTCAT
* * * *
59614 GATTAGGCACCATAAACATAGT--CTTC-TTAGA
123 GATTAGGAACCAAAAACACATTCCCTTCATT--A
* * * * *
59645 TGGATACAGGATATTGATGATTTGGT-TTCGCAAAAAATGC--TTTTCCCATAAATTTTG-TAAA
1 -GGATACATGACATTGATGCTTTGGTGTT-GCAAGAAA-GCTTTTTTTCC--AAATTTTGATAAA
* * * * * * **
59706 TTAT-AAA-TTTGTGCTTCAAATGAGACAAACATGGATTCTAGT-AAGGATCTTCATTCATTTTG
61 --ATCAAAGTTTGTACTTTAAATGAGACAAACATTGATTCTCGTAAAAG-TCTCCATTC-TTTCA
* * * *
59768 TGATTAGGCACTATAAACAC-TTTCCTT-ATTA
122 TGATTAGGAACCAAAAACACATTCCCTTCATTA
* * * ** * * ** * ***
59799 GGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATATTTCTTTGCCTTGTTTTCCG-TAAAA
1 GGATACATGACATTGATGCTTTGGTGTTGCA-AGAAAGCTTT-TTTTCCAAATTTT--GATAAAA
** *
59863 TCAAAGTTTGTACTTTAAATGAGACATGCATTGATTC-CAGTAAAAGTCTCCATTCTTTTCAAGA
62 TCAAAGTTTGTACTTTAAATGAGACAAACATTGATTCTC-GTAAAAGTCTCCATTC-TTTCATGA
* *
59927 TT-GGCAACCAAAACCACATTCCCTTCATTT
125 TTAGG-AACCAAAAACACATTCCCTTCATTA
** * ** ** * *
59957 GGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTGTTCTCCCCATCGTTATTAATAGAA
1 GGATACATGACATTGATGCTTTGGTGTTGCAAG-AAAGCT-TTTTTTCCA-AATT-TTGATAAAA
* * * * ** ** * * **
60022 TCAAAGTTTG-CCGCTTAAATAAGACAAACCTAAATAGTCATACTAA-TC-CACATTCTTTTTTG
62 TCAAAGTTTGTAC-TTTAAATGAGACAAACATTGATTCTCGTA-AAAGTCTC-CATTCTTTCAT-
* * * * * *
60084 GATTAGGCACCATAAACATAGTCTTCTT-ATAA
123 GATTAGGAACCAAAAACACATTC-CCTTCATTA
* * ** *
60116 GGATACATCATATTGATGCTTTGGT-TTCGTGAGAAACGCTTTTTTCCCACCAAGTTTTG-TAAA
1 GGATACATGACATTGATGCTTTGGTGTT-GCAAGAAA-GCTTTTTTTCCA--AA-TTTTGATAAA
* ** * * * ** * * * *
60179 GT-ATAAGTTCATTCCTCAAATGAGACAAACAAGGATTCTAGT-AACGATTTTCATTCATTTCAT
61 ATCA-AAGTTTGTACTTTAAATGAGACAAACATTGATTCTCGTAAAAG-TCTCCATTC-TTTCAT
* * * **
60242 GATTAGGCACTATAAACACATTCTCCCCCA-TA
123 GATTAGGAACCAAAAACACATTC-CCTTCATTA
* * * * ** * ** * * * ***
60274 GCATAAATGATATTGATGGTTTTCTTTTGCCTGGAAATCTTTTCTTTGCCTCACTTTCCTTAAAA
1 GGATACATGACATTGATGCTTTGGTGTTG-CAAGAAAGCTTTT-TTT-CC-AAATTTTGATAAAA
* * *
60339 TCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAGTCTCCATTCTTTCCAAGAT
62 TCAAAGTTTGTACTTTAAATGAGACAAACATTGATTCTCGTAAAAGTCTCCATTCTTT-CATGAT
* *
60404 TGGGAACCAAAAACACATTCCCTTGATTA
126 TAGGAACCAAAAACACATTCCCTTCATTA
* * *
60433 GGATACATGACATTGATGCCTTGGTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTATTGATAAAA
1 GGATACATGACATTGATGCTTTGGTGTTGCAAGA-AAGCTTTT-TTTCCAA-ATT-TTGATAAAA
* * * * * *
60498 TCAAAGTTTGT-CTCTTAAATAAGACAAA-TTTGAATACTCATACAAA-TCACCATTCTTTTCAA
62 TCAAAGTTTGTACT-TTAAATGAGACAAACATTG-ATTCTCGTA-AAAGTCTCCATTC-TTTCAT
* * * * *
60560 GATTAGGCACCATAAACATAGT--CTTCTTATA
123 GATTAGGAACCAAAAACACATTCCCTTCAT-TA
* * * * * *
60591 CGGATACAGGATATTGATGTTTTGGT-TTCGCTAGAAATGCTTTTTTCCCACAATTTTTG-TAGA
1 -GGATACATGACATTGATGCTTTGGTGTT-GCAAGAAA-GCTTTTTTTCCA-AA-TTTTGATAAA
* ** * ** * * * * * * *
60654 TTTTAAGTTCGGGCTTCAAATAAGACAAACATGGATTATAGT-AAGGATCTTCATTCATTTCATG
61 ATCAAAGTTTGTACTTTAAATGAGACAAACATTGATTCTCGTAAAAG-TCTCCATTC-TTTCATG
* * * *
60718 ATTAGGCACTATAAACACATTCTCC-TCATCCA
124 ATTAGGAACCAAAAACACATTC-CCTTCAT-TA
* * * * * * * * ** **
60750 -GATGCATGATATTGATGGTTTTGTTTTACATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAA
1 GGATACATGACATTGATGCTTTGGTGTTGCAAG-AAAGCTTTT-TTT-CCAAATTTT-GATAAAA
* ** * *
60814 TTAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCTTTCTTT-TTGAGA
62 TCAAAGTTTGTACTTTAAATGAGACAAACATTGATTCTCGTAAAAGTCTCCATTCTTTCAT--GA
* *
60878 CTGGGAACCAAAAACACATTCCCTTCATTA
125 TTAGGAACCAAAAACACATTCCCTTCATTA
* * * * * ** *
60908 GGATACATGACAATGATGCTTTGCTGTTGCAAAAGAACCTTGTCTTTCCACCGTTATTGATAGAA
1 GGATACATGACATTGATGCTTTGGTGTTGCAAGA-AAGCTT-TTTTTCCA-AATT-TTGATAAAA
* * * ** * * * **
60973 TTAAAGTTTGT-CTCTTAAATAAGATAAACATAAATACTCATACTAA-TCGACATTCTTTTC-TG
62 TCAAAGTTTGTACT-TTAAATGAGACAAACATTGATTCTCGTA-AAAGTCTCCATTC-TTTCAT-
** * * * * *
61035 GATTAGCCACCATAAACATAGTCTTCTT-ATAA
123 GATTAGGAACCAAAAACACATTC-CCTTCATTA
* ** *
61067 GGATACATGATATTGATGCTTTGGT-TTCGTGAGAAACGCTTTTTTCCCACCAAGTTTTG-TAAA
1 GGATACATGACATTGATGCTTTGGTGTT-GCAAGAAA-GCTTTTTTTCCA--AA-TTTTGATAAA
* ** * * * * ** * ** * *
61130 GT-ATAAGTTCATTCCTCAAATGAGAGAAACAAGGATTCTAGT-AGCGATTTTCATTCATTTCAT
61 ATCA-AAGTTTGTACTTTAAATGAGACAAACATTGATTCTCGTAAAAG-TCTCCATTC-TTTCAT
* * * **
61193 GATTAGGCACTATAAACACATTCTCCCCCA-TA
123 GATTAGGAACCAAAAACACATTC-CCTTCATTA
* * * * ** * ** * * * ***
61225 GAATAAATGATATTGATGGTTTTCTTTTGCCTGGAAATCTTTTCTTTGCCTCACTTTCCTTAAAA
1 GGATACATGACATTGATGCTTTGGTGTTG-CAAGAAAGCTTTT-TTT-CC-AAATTTTGATAAAA
* * *
61290 TCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAGTCTCCATTCTTTCCAAGAT
62 TCAAAGTTTGTACTTTAAATGAGACAAACATTGATTCTCGTAAAAGTCTCCATTCTTT-CATGAT
* * *
61355 TGGGAACCAAAAACACATTCTCTTGATTA
126 TAGGAACCAAAAACACATTCCCTTCATTA
* * *
61384 GGATACATGACATTGATGCCTTGGTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTATTGATAAAA
1 GGATACATGACATTGATGCTTTGGTGTTGCAAGA-AAGCTTTT-TTTCCAA-ATT-TTGATAAAA
* * * * * * *
61449 TCAAAGTTTGT-CTTTTAAATAAGACAAA-TTTGAATACTCATACAAA-TCACCATTTTTTTCAA
62 TCAAAGTTTGTAC-TTTAAATGAGACAAACATTG-ATTCTCGTA-AAAGTCTCCA-TTCTTTCAT
* * * * *
61511 GATTAGGCACCATAAACATAGT--CTTCTTATA
123 GATTAGGAACCAAAAACACATTCCCTTCAT-TA
* * * * * *
61542 CGGATACAAGATATTGATGTTTTGGT-TTCGCTAGAAATGCTTTTTTCCCACAATTTTTG-TAGA
1 -GGATACATGACATTGATGCTTTGGTGTT-GCAAGAAA-GCTTTTTTTCCA-AA-TTTTGATAAA
* ** * ** * * * * * * *
61605 TTTTAAGTTCGGGCCTCAAATGAGACAAACATGGATTATAGT-AAGGATCTTCATTCATTTCATG
61 ATCAAAGTTTGTACTTTAAATGAGACAAACATTGATTCTCGTAAAAG-TCTCCATTC-TTTCATG
* * * **
61669 ATTAGGCACTATAAACACATTCTCC-TCATCC
124 ATTAGGAACCAAAAACACATTC-CCTTCATTA
* * * * * * * * ** **
61700 GGATGCATGATATTGATGGTTTTGTTTTACATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAA
1 GGATACATGACATTGATGCTTTGGTGTTGCAAG-AAAGCTTTT-TTT-CCAAATTTT-GATAAAA
* * ** * ** *
61765 TTAAAATTTGTACTTTAAATGAGACATGCATTGATTCTTGTAAAAGTCTCTTTTCTTT-TTGAGA
62 TCAAAGTTTGTACTTTAAATGAGACAAACATTGATTCTCGTAAAAGTCTCCATTCTTTCAT--GA
*
61829 CTAGGAACCAAAAACACATTCCCTTCATTA
125 TTAGGAACCAAAAACACATTCCCTTCATTA
* * * *
61859 GGATACATGACAATGATGCTTTGCTGTTGCAAAAGAAGCTTGTCTTTCCA
1 GGATACATGACATTGATGCTTTGGTGTTGCAAGA-AAGCTT-TTTTTCCA
61909 CCGTTATTGA
Statistics
Matches: 4173, Mismatches: 1288, Indels: 852
0.66 0.20 0.13
Matches are distributed among these distances:
140 9 0.00
141 8 0.00
142 80 0.02
143 5 0.00
144 1 0.00
145 1 0.00
146 1 0.00
150 3 0.00
153 25 0.01
154 36 0.01
155 92 0.02
156 225 0.05
157 532 0.13
158 959 0.23
159 1952 0.47
160 202 0.05
161 42 0.01
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (154 bp):
GGATACATGACATTGATGCTTTGGTGTTGCAAGAAAGCTTTTTTTCCAAATTTTGATAAAATCAA
AGTTTGTACTTTAAATGAGACAAACATTGATTCTCGTAAAAGTCTCCATTCTTTCATGATTAGGA
ACCAAAAACACATTCCCTTCATTA
Found at i:58438 original size:951 final size:951
Alignment explanation
Indices: 55760--62508 Score: 8687
Period size: 951 Copynumber: 7.1 Consensus size: 951
55750 TGCAAGACGC
* * * * * *
55760 TATTCATACAATCAAAGTTTGTCTTTTAAAGAAGACAAACCTGAATACTCATACTAATCCCCATT
1 TATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATT
* * * * *
55825 CTTTTTTGGATTAGGCACCATAAACATAGTCTTCTTACATGGATACAGGATATTGATGATTTGGT
66 CTTTTCTGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACATGATATTGATGCTTTGGT
* * *
55890 TTCGCAAG-AACGTTTTTTTCCCAT--AATTTTTGTAAATTCTAAGTTCGTGCCTTAAATGAGAC
131 TTCGCAAGAAACGTTTTCTTCCC-TCCAATTTTTGTAAATTCTAATTTCGTGCCTCAAATGAGAC
* * * *
55952 TAACATGGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTTTCCTC
195 AAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTC
* *
56017 ATTAGGATAAATGATTTTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTT
260 ATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTT
* *
56082 AAAATCAAACTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCATTTCA
325 AAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTTCA
* *
56147 AGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAA
390 AGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAA
* * ** * * *
56212 GAGAAGCTGTTCTCCCCATCGTTATTGATAGAAGCAAAGTTTGTCGCTTAAATAAGACAAACATG
455 GAAAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* * *
56277 AATAGTCATACTAATCCACGTTTTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
520 AATACTCATACTAATCC-CATTCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
* * * * * *
56342 TAAATGGTATTGATGCTTTGTTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGAAAAGTGTA
584 TACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACCAATTTTTGTAAAGTATA
* * * * * * *
56407 AGTTCATTCCTCAATTGACACAAACAAGGATTCCAGTAAGGATCATCATTCATTTCATGACTAGG
649 AGTTCGTTCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGG
* * * * * *
56472 CACTTTAAACACATTCTCCCCAATAGGATAAATGATATTGATAGTTTTCTTTTGCCTGAAAATCT
714 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCT
* **
56537 TTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTTG
779 TTTCTTTGCCTCATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCA
*
56602 TAAAAGTCTCCATTCTTTCCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGAC
844 TAAAAGTCTCCATTCTTTCCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGAC
** * *
56667 ATTGATGCTTTGGTGTGGCAAGAGAAGCTTTTCTTTCCAACAT
909 ATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCACCGT
* * * *
56710 TATTGATAAAATCAAAGTTTCTCTCTTAAAAAAGACAAACGTGAATACTCATACTAATCC-CAAT
1 TATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCAC-AT
* * * * *
56774 TC-TTTCAGGACTAGGCACCATAAACATAGTCTTCTTATACGGATACAGGATATTGATGATTTGG
65 TCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACATGATATTGATGCTTTGG
* * * * *
56838 TTTCGCTAGAAATGCCTTT-TTCCAT--AATTTTTG-AAGATTCT-ATGTTCATGCCTCAAATGA
130 TTTCGCAAGAAACG-TTTTCTTCCCTCCAATTTTTGTAA-ATTCTAAT-TTCGTGCCTCAAATGA
56898 GACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTC
192 GACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTC
* ** *
56963 CTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTTTTTGCCTTATTTTC
257 CTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTC
* *
57028 CTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGCAAAAGTCTCTATTCTTT
322 CTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTT
* * * * *
57093 TTAAGATTGGGAACTAAAAACACATTCCCATCATTAGGATACATGACATTGATGCTTTGGTGTTG
387 TCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
* * * *
57158 CAAG---A-----------CA---TTATTCATAAAATCAAAGTTTATCTTTTAAATAAGACAAAC
452 CAAGAAAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * * * * *
57206 TTAAATACTCATACTAATCCCCATTCCTTTCTGGATTAGGCACCATAAACATACTCTTCTTATAC
517 ATGAATACTCATACTAAT-CCCATTCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCATAA
* * * * * * *
57271 GGATACAGGATATTGATGATTTGGTTTTGCAAAAAACGCTTTTTTCCCA-TAATTTTTGTAAATT
581 GGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACCAATTTTTGTAAAGT
* * * * *
57335 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCGTCATTCGTTTCGTGATT
646 ATAAGTTCGTTCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATT
* * * *
57400 AGGCACTATAAACACATTCTCCTCATTAGGATAAATGAAATTGATGGTTTTCTTCTACATAGAAA
711 AGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAA
* * *
57465 TCTTTTCTTTGCCTCATTTTCCTTAAAATCAAAGTTTCTACTTTAATTGAGACATGCATTGATTC
776 TCTTTTCTTTGCCTCATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTC
* * * * * * * * *
57530 TCGTAAAAGTCTCAATTCTTTCTAATATTGGGATCCAAGAACATATTCCCTTTATTACGATACAT
841 TCATAAAAGTCTCCATTCTTTCCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAT
* * * ** *
57595 GACAATAATGCTTTGGTGCCACAAGAGAATATTTTCTTTCCACTGT
906 GACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCACCGT
* * * *
57641 TATTGATAGAATCAAAGTTTATGTTTTAAATAAGATAAACATGAATACTCATACTAATCCACATT
1 TATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATT
* * * *
57706 CTTGTCTGGATTAGGCACCGTAAACATTGTCTTCTAATAAGGATACATGATATTGATGCTTTGGT
66 CTTTTCTGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACATGATATTGATGCTTTGGT
* *
57771 TTCGCAAGAAACGTTTTCTTCCCTCCAATTTTCGTAAATTCTAATTTCGCGCCTCAAATGAGACA
131 TTCGCAAGAAACGTTTTCTTCCCTCCAATTTTTGTAAATTCTAATTTCGTGCCTCAAATGAGACA
* * * *
57836 AACATGGATTTTAGTAAGGATTTTCATTCATTTCATGATTAGGCACTATAAA-ACATTCTCCACA
196 AACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCA
* * * * *
57900 TTAGGATAAATGATACTGATGCTTTTTTTTTTTGCAAGAAAATCTTTTCTATGCCTTATTTTCCT
261 TTAGGATAAATGATATTGATG--GTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCT
* *
57965 TAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCATAAAAGTTTCCATTCTTTTC
324 TAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTTC
* *
58030 AAGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTAGG-GCCGC
389 AAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT-GGTGTCGC
* * *
58094 AAGAAAAGGTTTTC-TTCCTACCGTTACTGATAGAATCACAG-TTGTCTCTTAAATAAGACAAAC
453 AAGAAAAGCTTTTCTTTCC-ACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * * * *
58157 TTGAATACTCACACTAATCCCATTCTTTTCAGGATTAGGCACCATAAACATAATCTTCTCATTAG
517 ATGAATACTCATACTAATCCCATTCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCATAAG
* * * * * *
58222 GATACATGATACTGATGCTTTGGTTTCGCAAGATACGCTTTCATCCCGCCTATTTTTGCAAAGTA
582 GATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACCAATTTTTGTAAAGTA
* * * **
58287 TAAGTTCATTCCTCAAATTAGACAAACATGGATTCTAGTAAGGATCTTCGTTCATTTTGTGATTA
647 TAAGTTCGTTCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTA
*
58352 GGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAAT
712 GGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAAT
* * * *
58417 CTTTTTTTTGCCTCGTTTTCCTTAAAATCAAAGTTTGTACTTTAATTGAGACATGCATTGATTCT
777 CTTTTCTTTGCCTCATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCT
* * * *
58482 CATAAAAGTCTCCATTCTTTCTAATATTGGGAACCAAGAACACATTCCCTTTATTAGGATACATG
842 CATAAAAGTCTCCATTCTTTCCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATG
* * *
58547 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT
907 ACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCACCGT
* *
58592 TATTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACATAAATACTCATACTAATCCACATT
1 TATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATT
* * *
58657 CTTTTCTAGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACATGATATTGATGCTTTGG-
66 CTTTTCTGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACATGATATTGATGCTTTGGT
** * * * * *
58721 TTCTGCAAGAAACACTTTCTTCCCCCCAATTTTTGTAAACTCTAAATTCGTGTCTTAAATGAGAC
131 TTC-GCAAGAAACGTTTTCTTCCCTCCAATTTTTGTAAATTCTAATTTCGTGCCTCAAATGAGAC
* * * * *
58786 AAGCATTGATTGTAGTAAGGATCTTCACTCATTTCATGATTAGGCACTATAAACACATTCTCCTC
195 AAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTC
* ** *
58851 ATCAGGATGCATGATATTGATGGTTTTCTTTTGCAT-AGAAATCTTTTCTTTGCCTTATTTTCCC
260 ATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGA-AAATCTTTTCTTTGCCTTATTTTCCT
*
58915 TAAAATCAAAGTTTGTACTTTAAATGCGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTTC
324 TAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTTC
* * * *
58980 AAGATTGGGAACCCAAAACACATTCCCTTCATTAAGATACATGACATTGATGCTTTGGTGTCACA
389 AAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCA
* * * * * * *
59045 AGAAAGGGTTTTCTTTCCAACGTTATCGATAAAATCAAAATTTGTCTCTTAAATAAGACAAACTT
454 AGAAAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * * *
59110 GAATACTCATACTAATCCCATTCTTTTCAGGATTAGGCACCATAAACATTGTCTTCTTATACGGA
519 GAATACTCATACTAATCCCATTCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
* * * * * *
59175 TACAGGATATTGATGATTTGGTTTCGCAAGAAACGCTTTTTTCCCA-TAATTTTTGTAAATTCTA
584 TACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACCAATTTTTGTAAAGTATA
* * * *
59239 AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCGTCATTCGTTTCGTGATTAGG
649 AGTTCGTTCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGG
* * *
59304 CACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATTGTTTTCTTTTGCATGGAAATCG
714 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCT
* ** * * *
59369 TTTCTTTGACTTGTTTTCCTTAAAATCAAAGTTTGCACTTTAAATGAGATAAGCATTGATTCCCA
779 TTTCTTTGCCTCATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCA
* * * *
59434 TAAAAGTCTCTATTCTTTTCAAGATT-GGAAGCCAAAAACACATTCCCTTCATTAAGATACAAGA
844 TAAAAGTCTCCATTCTTTCCAAGATTGGGAA-CCAAAAACACATTCCCTTCATTAGGATACATGA
* **
59498 CATTGACGCTTTGGTGTCACAAGAGAAG-TTGTTCTCCCCACCGT
908 CATTGATGCTTTGGTGTCACAAGAGAAGCTT-TTCTTTCCACCGT
* * * * *
59542 TATTAATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA-ACTTATGCTAATCCCCGTT
1 TATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATT
* * * *
59606 CTTTT-TAGGATTAGGCACCATAAACATAGTCTTCTTAGATGGATACAGGATATTGATGATTTGG
66 CTTTTCT-GGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACATGATATTGATGCTTTGG
* * * * * *
59670 TTTCGCAAAAAATGCTTTTC--CCAT--AAATTTTGTAAATTATAAATTT-GTGCTTCAAATGAG
130 TTTCGCAAGAAACG-TTTTCTTCCCTCCAATTTTTGTAAATTCT-AATTTCGTGCCTCAAATGAG
*
59730 ACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC-TT-TCC
193 ACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCC
* * * *
59793 TTATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAAT-ATTTCTTTGCCTTGTTTTCC
258 TCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCC
*
59857 GTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTC-CAGTAAAAGTCTCCATTCTTT
323 TTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTC-GTAAAAGTCTCCATTCTTT
* *
59921 TCAAGATT-GGCAACCAAAACCACATTCCCTTCATTTGGATACATGACATTGATGCTTTGGTGTC
387 TCAAGATTAGG-AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC
* * ** * * * *
59985 ACAAGAAAAGCTGTTCTCCCCATCGTTATTAATAGAATCAAAGTTTGCCGCTTAAATAAGACAAA
451 GCAAGAAAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
* * * * *
60050 CCTAAATAGTCATACTAATCCACATTCTTTTTTGGATTAGGCACCATAAACATAGTCTTCTTATA
516 CATGAATACTCATACTAATCC-CATTCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCATA
* ** * *
60115 AGGATACATCATATTGATGCTTTGGTTTCGTGAGAAACGCTTTTTTCCCACCAAGTTTTGTAAAG
580 AGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACCAATTTTTGTAAAG
* * * *
60180 TATAAGTTCATTCCTCAAATGAGACAAACAAGGATTCTAGTAACGATTTTCATTCATTTCATGAT
645 TATAAGTTCGTTCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGAT
* * *
60245 TAGGCACTATAAACACATTCTCCCCCA-TAGCATAAATGATATTGATGGTTTTCTTTTGCCTGGA
710 TAGGCACTATAAACACATTCT-CCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGA
*
60309 AATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGAT
774 AATCTTTTCTTTGCCTCATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGAT
*
60374 TCTCATAAAAGTCTCCATTCTTTCCAAGATTGGGAACCAAAAACACATTCCCTTGATTAGGATAC
839 TCTCATAAAAGTCTCCATTCTTTCCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATAC
* * *
60439 ATGACATTGATGCCTTGGTGTCGCAAGAGAAGCTTTTCTTTCCAACGT
904 ATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCACCGT
* ** *
60487 TATTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAATTTGAATACTCATACAAAT-CACCAT
1 TATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCA-CAT
** * * *
60551 TCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTTATACGGATACAGGATATTGATGTTTTGG
65 TCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACATGATATTGATGCTTTGG
* * * * * * * * *
60616 TTTCGCTAGAAATGCTTTT-TTCCC-ACAATTTTTGTAGATTTTAAGTTCGGGCTTCAAATAAGA
130 TTTCGCAAGAAACG-TTTTCTTCCCTCCAATTTTTGTAAATTCTAATTTCGTGCCTCAAATGAGA
* *
60679 CAAACATGGATTATAGTAAGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATTCTCCT
194 CAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCT
* ** * *
60744 CATCCA-GATGCATGATATTGATGGTTTTGTTTTACATGAAAATCTTTTCTTTGCCTTATTTTCC
259 CAT-TAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCC
* *
60808 TTAAAATTAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCTTTCTTTT
323 TTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTT
** * * * * *
60873 TGAGACTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACAATGATGCTTTGCTGTTGC
388 CAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGC
* * * *
60938 AA-AAGAACCTTGTCTTTCCACCGTTATTGATAGAATTAAAGTTTGTCTCTTAAATAAGATAAAC
453 AAGAA-AAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * * *
61002 ATAAATACTCATACTAATCGACATTCTTTTCTGGATTAGCCACCATAAACATAGTCTTCTTATAA
517 ATGAATACTCATACTAATC-CCATTCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCATAA
** * *
61067 GGATACATGATATTGATGCTTTGGTTTCGTGAGAAACGCTTTTTTCCCACCAAGTTTTGTAAAGT
581 GGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACCAATTTTTGTAAAGT
* * * *
61132 ATAAGTTCATTCCTCAAATGAGAGAAACAAGGATTCTAGT-AGCGATTTTCATTCATTTCATGAT
646 ATAAGTTCGTTCCTCAAATGAGACAAACATGGATTCTAGTAAG-GATCTTCATTCATTTCATGAT
* * *
61196 TAGGCACTATAAACACATTCTCCCCCA-TAGAATAAATGATATTGATGGTTTTCTTTTGCCTGGA
710 TAGGCACTATAAACACATTCT-CCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGA
*
61260 AATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGAT
774 AATCTTTTCTTTGCCTCATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGAT
* *
61325 TCTCATAAAAGTCTCCATTCTTTCCAAGATTGGGAACCAAAAACACATTCTCTTGATTAGGATAC
839 TCTCATAAAAGTCTCCATTCTTTCCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATAC
* * *
61390 ATGACATTGATGCCTTGGTGTCGCAAGAGAAGCTTTTCTTTCCAACGT
904 ATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCACCGT
* * ** *
61438 TATTGATAAAATCAAAGTTTGTCTTTTAAATAAGACAAATTTGAATACTCATACAAAT-CACCAT
1 TATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCA-CAT
* ** * * *
61502 TTTTTTCAAGATTAGGCACCATAAACATAGTCTTCTTATACGGATACAAGATATTGATGTTTTGG
65 TCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACATGATATTGATGCTTTGG
* * * * * * *
61567 TTTCGCTAGAAATGCTTTT-TTCCC-ACAATTTTTGTAGATTTTAAGTTCGGGCCTCAAATGAGA
130 TTTCGCAAGAAACG-TTTTCTTCCCTCCAATTTTTGTAAATTCTAATTTCGTGCCTCAAATGAGA
* *
61630 CAAACATGGATTATAGTAAGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATTCTCCT
194 CAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCT
** ** * *
61695 CATCCGGATGCATGATATTGATGGTTTTGTTTTACATGAAAATCTTTTCTTTGCCTTATTTTCCT
259 CATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCT
* * * ** *
61760 TAAAATTAAAATTTGTACTTTAAATGAGACATGCATTGATTCTTGTAAAAGTCTCTTTTCTTTTT
324 TAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTTC
* * * * *
61825 GAGACTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACAATGATGCTTTGCTGTTGCA
389 AAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCA
* * * *
61890 A-AAGAAGCTTGTCTTTCCACCGTTATTGATAGAATTAAAGTTTATCTCTTAAATAAGATAAACA
454 AGAA-AAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * *
61954 TAAATACTCTTACTAATCGACATTCTTTTCTGGATTAGGCACCATAAACATAGTATTCTCATAAG
518 TGAATACTCATACTAATC-CCATTCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCATAAG
* * * * * * *
62019 GATAAATAATATTGATACTTTGGTTTGGCAAAAAATGCTTTCTTCCCACCAATTTTTGTAAAGTC
582 GATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACCAATTTTTGTAAAGTA
* * * * * ** **
62084 TAAGTTTGTGCCTCAAATGAGACAAACAGGGATTCTAGCAATGATCTTCATTTGTTTTGTGATTA
647 TAAGTTCGTTCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTA
* * * *
62149 GGCGCTATAAACACATTCTCCTCATT-GGCATAAATGATATTGATGGTTTTCTTTGGCACGAAAA
712 GGCACTATAAACACATTCTCCTCATTAGG-ATAAATGATATTGATGGTTTTCTTTTGCATGGAAA
* * * * * *
62213 TCTTTTCTTTTCC-CTATTTTACTTAAAATCAAAGTTTGTCCCTTCAAT-AGGGCAAGCATTGAT
776 TCTTTTCTTTGCCTC-ATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGA-GACAAGCATTGAT
** * * * * * * *
62276 TCTTGTAACAGTCTCCATTCTTTTCAAAATTGGGAACCAAGAACACATTCCCTTTATTACGACAC
839 TCTCATAAAAGTCTCCATTCTTTCCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATAC
* *
62341 AAGACATTGATGCTTTGGCGTCACAAGAGAAGCTTTTCTTTCCACCGT
904 ATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCACCGT
* * * *
62389 TATTGATAGAATCAAAGTTTGTCTCTTAAATATGGCAAACATGAATGCCCATACTAATCCACATT
1 TATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACA-T
*
62454 TTTTTTCTGGATTAGGCACCATAAACATAGTCTT-TTGATAAGGATACATGATATT
65 TCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTT-ATAAGGATACATGATATT
62509 TGTTAGGATC
Statistics
Matches: 5150, Mismatches: 569, Indels: 158
0.88 0.10 0.03
Matches are distributed among these distances:
931 333 0.06
932 199 0.04
933 30 0.01
934 79 0.02
935 161 0.03
936 2 0.00
938 1 0.00
942 3 0.00
943 206 0.04
944 125 0.02
945 317 0.06
946 173 0.03
947 10 0.00
948 87 0.02
949 428 0.08
950 702 0.14
951 2197 0.43
952 97 0.02
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (951 bp):
TATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATT
CTTTTCTGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACATGATATTGATGCTTTGGT
TTCGCAAGAAACGTTTTCTTCCCTCCAATTTTTGTAAATTCTAATTTCGTGCCTCAAATGAGACA
AACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCA
TTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTA
AAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTTCAA
GATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG
AAAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
ATACTCATACTAATCCCATTCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATA
CATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACCAATTTTTGTAAAGTATAAG
TTCGTTCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCA
CTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTT
TCTTTGCCTCATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATA
AAAGTCTCCATTCTTTCCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACAT
TGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCACCGT
Found at i:62823 original size:20 final size:20
Alignment explanation
Indices: 62800--62852 Score: 106
Period size: 20 Copynumber: 2.6 Consensus size: 20
62790 ACAATTCAAA
62800 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
62820 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
62840 GTATCGATACATG
1 GTATCGATACATG
62853 AAAAAGATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:62948 original size:20 final size:20
Alignment explanation
Indices: 62903--62954 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
62893 GTAGCCAAAC
**
62903 TTGTATCGATACACAAAGTA
1 TTGTATCGATACACAAAAAA
62923 -TGTATCGATACACAAAAAA
1 TTGTATCGATACACAAAAAA
62942 TTGTATCGATACA
1 TTGTATCGATACA
62955 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.42, C:0.15, G:0.13, T:0.29
Consensus pattern (20 bp):
TTGTATCGATACACAAAAAA
Found at i:68720 original size:20 final size:20
Alignment explanation
Indices: 68677--68722 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
68667 AAATCTTTTG
68677 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
68698 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
68718 CAAAA
1 CAAAA
68723 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:71142 original size:32 final size:33
Alignment explanation
Indices: 71099--71162 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
71089 TAGCCAAACT
* **
71099 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCAATACACAAAAAATTGTATCGATACAA
71131 TGTATCAATACACAAAAAATTGTATCGATACA
1 TGTATCAATACACAAAAAATTGTATCGATACA
71163 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (33 bp):
TGTATCAATACACAAAAAATTGTATCGATACAA
Found at i:72683 original size:159 final size:156
Alignment explanation
Indices: 72097--74171 Score: 641
Period size: 159 Copynumber: 13.1 Consensus size: 156
72087 TTTTTGCCTG
** * * *
72097 GAAATCTTTTCTTTGCC-TTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATT
1 GAAATCTTTTCTTT-CCACCATTTT-CTTAAAATCAAAGTTTATACTTTAAATGAGACAAGCGTT
* * *
72161 GATTCTCATAAAAGTCTCCATTCTTT-TCAAGATTGGGAACCAAAAACACATTC-CTTTCATTAG
64 GATTCTCATAAAAGTCTCCATTCTTTCTC-A-ATTAGGAACCATAAACACATTCTC-CTCATTAG
* ***
72224 GATACAA-GACATTGATGCTTTAG-GGCCGCAA
126 GATA-AATGATATTGATGCTTT-GCTTTCGCAA
* * * ** * * * * *
72255 GAGAA-CTTTTCTTCCCATCGTTATTGATAGAATCAAAG-TTGT-CTCTTAAATTAGAAAAAC-T
1 GA-AATCTTTTCTTTCCACCATT-TTCTTAAAATCAAAGTTTATACT-TTAAATGAGACAAGCGT
* * * * * * * *
72316 TGAATACTCACACTAA-TCCCCATTATTT-TCAAGATTAGGCACCATAAACATAATACT-CTCAT
63 TG-ATTCTCATA-AAAGTCTCCATTCTTTCTC-A-ATTAGGAACCATAAACA-CATTCTCCTCAT
* * * *
72378 AAGGATACATGATATTGATGCTTTGGTTTCGCAT
123 TAGGATAAATGATATTGATGCTTTGCTTTCGCAA
* * * * * * *
72412 GATATGC-TTTCTTCCCACCTATTTT-TGTAAAGGAT--AAGTTCATTCCTTAAATTAGACAAAC
1 GAAAT-CTTTTCTTTCCACC-ATTTTCT-TAAA--ATCAAAGTTTATACTTTAAATGAGACAAGC
* * * * * * * * **
72473 ATGGATTCTAAT-AAGGATCTTCATTCAATTTGT-GATTAGGCACTGTAAACACATTCTCCTCAT
61 GTTGATTCTCATAAAAG-TCTCCATTC--TTTCTCAATTAGGAACCATAAACACATTCTCCTCAT
* * * **
72536 TAGGATAAATGATATTGATGGTTTTCTTTTGCGTG
123 TAGGATAAATGATATTGATGCTTTGCTTTCGC-AA
* * * *
72571 GAAATCTTTTCTTTGCATCGTTTTCCTTAAAATCAAAGTTTATACTTTAAATGAGACATGCGTTG
1 GAAATCTTTTCTTTCCACCATTTT-CTTAAAATCAAAGTTTATACTTTAAATGAGACAAGCGTTG
* * *
72636 ATTCTCGTAAAAGTCTCCATTCTTTCT-AATATAGGGAACCA-AGAACACATGC-CCTTTATTAG
65 ATTCTCATAAAAGTCTCCATTCTTTCTCAAT-TA-GGAACCATA-AACACATTCTCC-TCATTAG
* * * * *
72698 GATACATGACATTGATGCTTTGGTGTCACAA
126 GATAAATGATATTGATGCTTTGCTTTCGCAA
* ** * * * *
72729 GAGAAGCTTTTCTTTCCACCATTATTGATAGAATCAAAGTTTAT-CTCTTAAATAAGACAAAC-A
1 GA-AATCTTTTCTTTCCACCATT-TTCTTAAAATCAAAGTTTATACT-TTAAATGAGACAAGCGT
* * * ** * * * *
72792 TGAATACTCATACTAA-TC-CACATTTTTTTCTGGATTAGGCACCATAAACATAGTT-TTCTAAT
63 TG-ATTCTCATA-AAAGTCTC-CA-TTCTTTCTCAATTAGGAACCATAAACACA-TTCTCCTCAT
* * *
72854 AAGGATACATGATATTGATGCTTTGGTTTCGCAA
123 TAGGATAAATGATATTGATGCTTTGCTTTCGCAA
* * * ** * * *
72888 GAAACACTTTT-TTCCCACCAATTTT-TGTAAATTCTAAA-TTCGTACCTCAAATGAGACAAGCA
1 GAAA-TCTTTTCTTTCCACC-ATTTTCT-TAAAATC-AAAGTTTATACTTTAAATGAGACAAGCG
* ** * * * * *
72950 TGGATTCTTGT-AAGGATCTTCATTCATTTCAT-GATTAGGCACTATAAACACATTCTCCTCATT
62 TTGATTCTCATAAAAG-TCTCCATTC-TTTC-TCAATTAGGAACCATAAACACATTCTCCTCATT
* * * **
73013 AGGATAAATGATATTGATGGTTTTCTTTTGCGTG
124 AGGATAAATGATATTGATGCTTTGCTTTCGC-AA
** * *
73047 GAAATCTTTTCTTTGCC-TTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCGTT
1 GAAATCTTTTCTTT-CCACCATTTT-CTTAAAATCAAAGTTTATACTTTAAATGAGACAAGCGTT
* * * * **
73111 GAATCTCATAAAAGTCTCCATTCTTT-TCAAGATTGGGAACCAAAAACACAATCTTTTCATTAGG
64 GATTCTCATAAAAGTCTCCATTCTTTCTC-A-ATTAGGAACCATAAACACATTCTCCTCATTAGG
* ** * * *
73175 ATACATGGCAATGATGCTTTGGTGTCGCAA
127 ATAAATGATATTGATGCTTTGCTTTCGCAA
* * * ** * * * * *
73205 GTGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAG-TTGT-CTCTTAAATAAGACAAAC-A
1 G-AAATCTTTTCTTTCCACCATT-TTCTTAAAATCAAAGTTTATACT-TTAAATGAGACAAGCGT
* * * * * * *
73267 TGAATACTCATACTAA-TCCCCATTCTTT-TCAGGATTAGGCACCATAAGCATAGTCTTCC-CAT
63 TG-ATTCTCATA-AAAGTCTCCATTCTTTCTCA--ATTAGGAACCATAAACACATTC-TCCTCAT
* * *
73329 AAGGATACATGATATTGATGCTTTGGTTTCGCAA
123 TAGGATAAATGATATTGATGCTTTGCTTTCGCAA
* * * * * * *
73363 GATACA-C-TTTCTTCCCACCAATTTT-TGTAAAGT--ATGTGTTCATTGC-ATAAATGCGGCAA
1 GA-A-ATCTTTTCTTTCCACC-ATTTTCT-TAAAATCAAAGT-TT-A-TACTTTAAATGAGACAA
* * * ** * ** * * *
73422 ACATGGATTCTTGT-AAGGATC-CTCATTCATTT-TGTGATTAGGCACTATAAACACATTCTCTT
59 GCGTTGATTCTCATAAAAG-TCTC-CATTC-TTTCT-CAATTAGGAACCATAAACACATTCTCCT
* * * * *
73484 TATTAGGATAAATGATATTGATGGTTTTCTTTTGCATG
120 CATTAGGATAAATGATATTGATGCTTTGCTTTCGCA-A
* ** * * * *
73522 GAAATCTTTTCTTT-GACTTGTTTTCCTTAAAATAAAAGTTTGTACTTTAAATGAGACATGCATT
1 GAAATCTTTTCTTTCCAC-CATTTT-CTTAAAATCAAAGTTTATACTTTAAATGAGACAAGCGTT
* *
73586 GATTCTCATAAAAGTCTCCATTCTTTCTAAAATTAGGAACCAAAAACACATTC-CCTCTATTAGG
64 GATTCTCATAAAAGTCTCCATTCTTTCT-CAATTAGGAACCATAAACACATTCTCCTC-ATTAGG
* * * * *
73650 ATACATGACATTGATGCTTTGGTGTCACACA
127 ATAAATGATATTGATGCTTTGCTTTCGCA-A
* * ** * * * *
73681 -AGAAGCTTTTCTTTCTACCATTATTGATAGAATCAAAGTTTGT-CTCTTAAATAAGACAA--AT
1 GA-AATCTTTTCTTTCCACCATT-TTCTTAAAATCAAAGTTTATACT-TTAAATGAGACAAGCGT
* * ** * * * * *
73742 ATGAATACTCATACTAA-TC-CACATTCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTAAT
63 -TG-ATTCTCATA-AAAGTCTC-CATTC-TTTCTCAATTAGGAACCATAAACACATTCTCCTCAT
* * *
73805 AAGGATACATGATATTGATGCTTTGGTTTCGCAA
123 TAGGATAAATGATATTGATGCTTTGCTTTCGCAA
* * * * ** * * * * *
73839 GAAACACTTTT-TTCCCACCAATTTT-TGTAAATTCTAAGTTCGTGCCTCAAACGAGACAAGC-A
1 GAAA-TCTTTTCTTTCCACC-ATTTTCT-TAAAATCAAAGTTTATACTTTAAATGAGACAAGCGT
* * * * * *
73901 TGAATTCT--TGAAAGGATCTTCATTCATTTCAT-GATTCA-GCACTATAAACACATTCTCCTTA
63 TG-ATTCTCAT-AAAAG-TCTCCATTC-TTTC-TCAATT-AGGAACCATAAACACATTCTCCTCA
* * * * **
73962 TTAAGATAAATGATATTGATGGTTTTCTTTTGCGTG
122 TTAGGATAAATGATATTGATGCTTTGCTTTCGC-AA
* * *
73998 GAAATCTTTTCTTT--ACCTTATTTTCCTTAAAATCAAAGTTTATGCTTTAAATGAGACATGCAT
1 GAAATCTTTTCTTTCCACC--ATTTT-CTTAAAATCAAAGTTTATACTTTAAATGAGACAAGCGT
* * * *
74061 TGATTCTCGTAAAAGTCTCCATTCTTT-TCAAGATTGGGAACCAAAAACACATTC-CTTTCATTA
63 TGATTCTCATAAAAGTCTCCATTCTTTCTC-A-ATTAGGAACCATAAACACATTCTC-CTCATT-
* * * * *
74124 AGG-TACATGACATTGATGCTTTGGTGTCACAA
124 AGGATAAATGATATTGATGCTTTGCTTTCGCAA
*
74156 GAAAAGCTTTTCTTTC
1 G-AAATCTTTTCTTTC
74172 AAACGTTATT
Statistics
Matches: 1400, Mismatches: 372, Indels: 288
0.68 0.18 0.14
Matches are distributed among these distances:
155 2 0.00
156 15 0.01
157 151 0.11
158 528 0.38
159 636 0.45
160 61 0.04
161 7 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (156 bp):
GAAATCTTTTCTTTCCACCATTTTCTTAAAATCAAAGTTTATACTTTAAATGAGACAAGCGTTGA
TTCTCATAAAAGTCTCCATTCTTTCTCAATTAGGAACCATAAACACATTCTCCTCATTAGGATAA
ATGATATTGATGCTTTGCTTTCGCAA
Found at i:73000 original size:476 final size:475
Alignment explanation
Indices: 71916--74283 Score: 3343
Period size: 476 Copynumber: 5.0 Consensus size: 475
71906 TAAGCTTTCA
* * * **
71916 ATATTGATGCTTTGGTTTTGCAAGAAACGCTTTCTTCCCTCCAATTTTCATAAATTCTAAGTTCG
1 ATATTGATGCTTTGGTTTCGCAAGAAACACTTTCTTCCCACCAATTTTTGTAAATTCTAAGTTCG
* * *
71981 TGCCTCAAATGAGATGAAG-ATGGATTCTAGTAAGGATCTTTATTCATTTAGTGATTAGGCACTA
66 TGCCTCAAATGAGA-CAAGCATGGATTCTTGTAAGGATCTTCATTCATTTA-TGATTAGGCACTA
* * * * * * *
72045 TAAACACACTCTCCACATCT-GGAT-AATGATACTAATGCTTTTTTTTTGCCTGGAAATCTTTTC
129 TAAACACATTCTCCTCAT-TAGGATAAATGATATTGATGGTTTTCTTTTGCGTGGAAATCTTTTC
72108 TTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCATAAA
193 TTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCATAAA
* *
72173 AGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACAAGACATTG
258 AGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATCCCTTTCATTAGGATACATGACATTG
* * * *
72238 ATGCTTTAGG-GCCGCAAGAGAA-CTTTTCTTCCCATCGTTATTGATAGAATCAAAG-TTGTCTC
323 ATGCTTT-GGTGTCACAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTC
* * * * * * **
72300 TTAAATTAGAAAAACTTGAATACTCACACTAATCCCCATTATTTTCAAGATTAGGCACCATAAAC
387 TTAAATAAGACAAACATGAATACTCATACTAATCCACATTCTTTTCTGGATTAGGCACCATAAAC
* *
72365 ATAATAC-TCTCATAAGGATACATG
452 ATAGT-CTTCTAATAAGGATACATG
* * ** * *** *
72389 ATATTGATGCTTTGGTTTCGCATGATATGCTTTCTTCCCACCTATTTTTGTAAAGGATAAGTTCA
1 ATATTGATGCTTTGGTTTCGCAAGAAACACTTTCTTCCCACCAATTTTTGTAAATTCTAAGTTCG
* * * * ** * *
72454 TTCCTTAAATTAGACAAACATGGATTCTAATAAGGATCTTCATTCAATTTGTGATTAGGCACTGT
66 TGCCTCAAATGAGACAAGCATGGATTCTTGTAAGGATCTTCATTC-ATTTATGATTAGGCACTAT
72519 AAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCGTGGAAATCTTTTCTT
130 AAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCGTGGAAATCTTTTCTT
* ** * * *
72584 TGCATCGTTTTCCTTAAAATCAAAGTTTATACTTTAAATGAGACATGCGTTGATTCTCGTAAAAG
195 TGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCATAAAAG
* * *
72649 TCTCCATTC-TTTCTAATATAGGGAACCAAGAACACATGCCCTTT-ATTAGGATACATGACATTG
260 TCTCCATTCTTTTC-AAGATTGGGAACCAAAAACACAT-CCCTTTCATTAGGATACATGACATTG
* *
72712 ATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCACCATTATTGATAGAATCAAAGTTTATCTCT
323 ATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCT
*
72777 TAAATAAGACAAACATGAATACTCATACTAATCCACATTTTTTTCTGGATTAGGCACCATAAACA
388 TAAATAAGACAAACATGAATACTCATACTAATCCACATTCTTTTCTGGATTAGGCACCATAAACA
*
72842 TAGTTTTCTAATAAGGATACATG
453 TAGTCTTCTAATAAGGATACATG
* *
72865 ATATTGATGCTTTGGTTTCGCAAGAAACACTTTTTTCCCACCAATTTTTGTAAATTCTAAATTCG
1 ATATTGATGCTTTGGTTTCGCAAGAAACACTTTCTTCCCACCAATTTTTGTAAATTCTAAGTTCG
*
72930 TACCTCAAATGAGACAAGCATGGATTCTTGTAAGGATCTTCATTCATTTCATGATTAGGCACTAT
66 TGCCTCAAATGAGACAAGCATGGATTCTTGTAAGGATCTTCATTCATTT-ATGATTAGGCACTAT
72995 AAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCGTGGAAATCTTTTCTT
130 AAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCGTGGAAATCTTTTCTT
* *
73060 TGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCGTTGAATCTCATAAAAG
195 TGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCATAAAAG
* * *
73125 TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACAAT-CTTTTCATTAGGATACATGGCAATGA
260 TCTCCATTCTTTTCAAGATTGGGAACCAAAAACAC-ATCCCTTTCATTAGGATACATGACATTGA
* *
73189 TGCTTTGGTGTCGCAAGTGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAG-TTGTCTCTT
324 TGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTT
* * *
73253 AAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAGCAT
389 AAATAAGACAAACATGAATACTCATACTAATCCACATTCTTTTCTGGATTAGGCACCATAAACAT
**
73318 AGTCTTCCCATAAGGATACATG
454 AGTCTTCTAATAAGGATACATG
* * * **
73340 ATATTGATGCTTTGGTTTCGCAAGATACACTTTCTTCCCACCAATTTTTGTAAAGTATGTGTTCA
1 ATATTGATGCTTTGGTTTCGCAAGAAACACTTTCTTCCCACCAATTTTTGTAAATTCTAAGTTC-
* * * * * * *
73405 TTGCAT-AAATGCGGCAAACATGGATTCTTGTAAGGATCCTCATTCATTTTGTGATTAGGCACTA
65 GTGCCTCAAATGAGACAAGCATGGATTCTTGTAAGGATCTTCATTCA-TTTATGATTAGGCACTA
* * *
73469 TAAACACATTCTCTTTATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCT
129 TAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCGTGGAAATCTTTTCT
* * *
73534 TTGACTTGTTTTCCTTAAAATAAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCATAAAA
194 TTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCATAAAA
* * *
73599 GTCTCCATTC-TTTCTAAAATTAGGAACCAAAAACACATTCCCTCT-ATTAGGATACATGACATT
259 GTCTCCATTCTTTTC-AAGATTGGGAACCAAAAACACA-TCCCTTTCATTAGGATACATGACATT
* *
73662 GATGCTTTGGTGTCACACA-AGAAGCTTTTCTTTCTACCATTATTGATAGAATCAAAGTTTGTCT
322 GATGCTTTGGTGTCACA-AGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCT
*
73726 CTTAAATAAGACAAATATGAATACTCATACTAATCCACATTCTTTTCTGGATTAGGCACCATAAA
386 CTTAAATAAGACAAACATGAATACTCATACTAATCCACATTCTTTTCTGGATTAGGCACCATAAA
73791 CATAGTCTTCTAATAAGGATACATG
451 CATAGTCTTCTAATAAGGATACATG
*
73816 ATATTGATGCTTTGGTTTCGCAAGAAACACTTTTTTCCCACCAATTTTTGTAAATTCTAAGTTCG
1 ATATTGATGCTTTGGTTTCGCAAGAAACACTTTCTTCCCACCAATTTTTGTAAATTCTAAGTTCG
* * *
73881 TGCCTCAAACGAGACAAGCATGAATTCTTGAAAGGATCTTCATTCATTTCATGATTCA-GCACTA
66 TGCCTCAAATGAGACAAGCATGGATTCTTGTAAGGATCTTCATTCATTT-ATGATT-AGGCACTA
* *
73945 TAAACACATTCTCCTTATTAAGATAAATGATATTGATGGTTTTCTTTTGCGTGGAAATCTTTTCT
129 TAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCGTGGAAATCTTTTCT
* * * *
74010 TTACCTTATTTTCCTTAAAATCAAAGTTTATGCTTTAAATGAGACATGCATTGATTCTCGTAAAA
194 TTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCATAAAA
*
74075 GTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAAGG-TACATGACATTG
259 GTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATCCCTTTCATT-AGGATACATGACATTG
* * * * *
74139 ATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAAACGTTATTGATAAAATCAAAGTTTGTCGCT
323 ATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCT
* * *
74204 TAAATAAGACAAACTTGAATACGT-ATGCTAATCC-CAATTCTTTTCTAGATTAGGCACCATAAA
388 TAAATAAGACAAACATGAATAC-TCATACTAATCCAC-ATTCTTTTCTGGATTAGGCACCATAAA
*
74267 AATAGTCTTCTAATAAG
451 CATAGTCTTCTAATAAG
74284 TGTAGACACC
Statistics
Matches: 1687, Mismatches: 178, Indels: 57
0.88 0.09 0.03
Matches are distributed among these distances:
472 3 0.00
473 126 0.07
474 168 0.10
475 470 0.28
476 905 0.54
477 15 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (475 bp):
ATATTGATGCTTTGGTTTCGCAAGAAACACTTTCTTCCCACCAATTTTTGTAAATTCTAAGTTCG
TGCCTCAAATGAGACAAGCATGGATTCTTGTAAGGATCTTCATTCATTTATGATTAGGCACTATA
AACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCGTGGAAATCTTTTCTTT
GCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCATAAAAGT
CTCCATTCTTTTCAAGATTGGGAACCAAAAACACATCCCTTTCATTAGGATACATGACATTGATG
CTTTGGTGTCACAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAA
ATAAGACAAACATGAATACTCATACTAATCCACATTCTTTTCTGGATTAGGCACCATAAACATAG
TCTTCTAATAAGGATACATG
Found at i:73910 original size:951 final size:950
Alignment explanation
Indices: 71916--74276 Score: 3695
Period size: 951 Copynumber: 2.5 Consensus size: 950
71906 TAAGCTTTCA
* * * * **
71916 ATATTGATGCTTTGGTTTTGCAAGAAACGCTTTCTTCCCTCCAATTTTCATAAATTCTAAGTTCG
1 ATATTGATGCTTTGGTTTCGCAAGAAACACTTTTTTCCCACCAATTTTTGTAAATTCTAAGTTCG
* * *
71981 TGCCTCAAATGAGATGAAG-ATGGATTCTAGTAAGGATCTTTATTCATTT-AGTGATTAGGCACT
66 TGCCTCAAATGAGA-CAAGCATGGATTCTTGTAAGGATCTTCATTCATTTCA-TGATTAGGCACT
* * * * * * *
72044 ATAAACACACTCTCCACATCT-GGAT-AATGATACTAATGCTTTTTTTTTGCCTGGAAATCTTTT
129 ATAAACACATTCTCCTCAT-TAGGATAAATGATATTGATGGTTTTCTTTTGCGTGGAAATCTTTT
72107 CTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCATAA
193 CTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCATAA
*
72172 AAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACAAGACATT
258 AAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATT
* * *
72237 GATGCTTTAGG-GCCGCAAGAGAA-CTTTTCTTCCCATCGTTATTGATAGAATCAAAGTTGTCTC
323 GATGCTTT-GGTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTATTGATAGAATCAAAGTTGTCTC
* * * *
72300 TTAAATTAGAAAAACTTGAATACTCACACTAATCCCCATTATTTTCAAGATTAGGCACCATAAAC
387 TTAAATAAGACAAACTTGAATACTCATACTAATCCCCATTCTTTTC-AGATTAGGCACCATAAAC
* * * **
72365 ATAATAC-TCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCATGATATGCTTTCTTCCCA
451 ATAGT-CTTCCCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGATACACTTTCTTCCCA
* * * *
72429 CCTATTTTTGTAAAGGATAAGTTCATTCCTTAAATTAGACAAACATGGATTCTAATAAGGATCTT
515 CCAATTTTTGTAAAGGATAAGTTCATTCCATAAATGAGACAAACATGGATTCTAATAAGGATCCT
*
72494 CATTCAATTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTT
580 CATTCAATTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTT
* *
72559 TTCTTTTGCGTGGAAATCTTTTCTTTGCATCGTTTTCCTTAAAATCAAAGTTTATACTTTAAATG
645 TTCTTTTGCATGGAAATCTTTTCTTTGCATCGTTTTCCTTAAAATAAAAGTTTATACTTTAAATG
* * * *
72624 AGACATGCGTTGATTCTCGTAAAAGTCTCCATTCTTTCTAATATAGGGAACCAAGAACACATGCC
710 AGACATGCATTGATTCTCATAAAAGTCTCCATTCTTTCTAAAATAGGGAACCAAAAACACATGCC
*
72689 CTTTATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCACCATTAT
775 CTCTATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCACCATTAT
*
72754 TGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATTTTT
840 TGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATTCTT
*
72819 TTCTGGATTAGGCACCATAAACATAGTTTTCTAATAAGGATACATG
905 TTCTGGATTAGGCACCATAAACATAGTCTTCTAATAAGGATACATG
*
72865 ATATTGATGCTTTGGTTTCGCAAGAAACACTTTTTTCCCACCAATTTTTGTAAATTCTAAATTCG
1 ATATTGATGCTTTGGTTTCGCAAGAAACACTTTTTTCCCACCAATTTTTGTAAATTCTAAGTTCG
*
72930 TACCTCAAATGAGACAAGCATGGATTCTTGTAAGGATCTTCATTCATTTCATGATTAGGCACTAT
66 TGCCTCAAATGAGACAAGCATGGATTCTTGTAAGGATCTTCATTCATTTCATGATTAGGCACTAT
72995 AAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCGTGGAAATCTTTTCTT
131 AAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCGTGGAAATCTTTTCTT
* *
73060 TGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCGTTGAATCTCATAAAAG
196 TGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCATAAAAG
* * * *
73125 TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACAATCTTTTCATTAGGATACATGGCAATGAT
261 TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGAT
* *
73190 GCTTTGGTGTCGCAAGTGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAA
326 GCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTATTGATAGAATCAAAGTTGTCTCTTAA
* *
73255 ATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAGCATAG
391 ATAAGACAAACTTGAATACTCATACTAATCCCCATTCTTTTCA-GATTAGGCACCATAAACATAG
73320 TCTTCCCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGATACACTTTCTTCCCACCAAT
455 TCTTCCCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGATACACTTTCTTCCCACCAAT
* ** * * * **
73385 TTTTGTAAAGTATGTGTTCATTGCATAAATGCGGCAAACATGGATTCTTGTAAGGATCCTCATTC
520 TTTTGTAAAGGATAAGTTCATTCCATAAATGAGACAAACATGGATTCTAATAAGGATCCTCATTC
* * *
73450 ATTTTGTGATTAGGCACTATAAACACATTCTCTTTATTAGGATAAATGATATTGATGGTTTTCTT
585 AATTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTT
* *
73515 TTGCATGGAAATCTTTTCTTTG-ACTTGTTTTCCTTAAAATAAAAGTTTGTACTTTAAATGAGAC
650 TTGCATGGAAATCTTTTCTTTGCA-TCGTTTTCCTTAAAATAAAAGTTTATACTTTAAATGAGAC
*
73579 ATGCATTGATTCTCATAAAAGTCTCCATTCTTTCTAAAATTA-GGAACCAAAAACACATTCCCTC
714 ATGCATTGATTCTCATAAAAGTCTCCATTCTTTCTAAAA-TAGGGAACCAAAAACACATGCCCTC
*
73643 TATTAGGATACATGACATTGATGCTTTGGTGTCACACA-AGAAGCTTTTCTTTCTACCATTATTG
778 TATTAGGATACATGACATTGATGCTTTGGTGTCACA-AGAGAAGCTTTTCTTTCCACCATTATTG
* *
73707 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAATATGAATACTCATACTAATCCACATTCTTTT
842 ATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATTCTTTT
73772 CTGGATTAGGCACCATAAACATAGTCTTCTAATAAGGATACATG
907 CTGGATTAGGCACCATAAACATAGTCTTCTAATAAGGATACATG
73816 ATATTGATGCTTTGGTTTCGCAAGAAACACTTTTTTCCCACCAATTTTTGTAAATTCTAAGTTCG
1 ATATTGATGCTTTGGTTTCGCAAGAAACACTTTTTTCCCACCAATTTTTGTAAATTCTAAGTTCG
* * *
73881 TGCCTCAAACGAGACAAGCATGAATTCTTGAAAGGATCTTCATTCATTTCATGATTCA-GCACTA
66 TGCCTCAAATGAGACAAGCATGGATTCTTGTAAGGATCTTCATTCATTTCATGATT-AGGCACTA
* *
73945 TAAACACATTCTCCTTATTAAGATAAATGATATTGATGGTTTTCTTTTGCGTGGAAATCTTTTCT
130 TAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCGTGGAAATCTTTTCT
* * * *
74010 TTACCTTATTTTCCTTAAAATCAAAGTTTATGCTTTAAATGAGACATGCATTGATTCTCGTAAAA
195 TTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCATAAAA
74075 GTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAAGG-TACATGACATTG
260 GTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATT-AGGATACATGACATTG
* * * * *
74139 ATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAAACGTTATTGATAAAATCAAAGTTTGTCGCT
324 ATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTATTGATAGAATCAAAG-TTGTCTCT
* * *
74204 TAAATAAGACAAACTTGAATACGT-ATGCTAATCCCAATTCTTTTCTAGATTAGGCACCATAAAA
388 TAAATAAGACAAACTTGAATAC-TCATACTAATCCCCATTCTTTTC-AGATTAGGCACCATAAAC
74268 ATAGTCTTC
451 ATAGTCTTC
74277 TAATAAGTGT
Statistics
Matches: 1296, Mismatches: 100, Indels: 29
0.91 0.07 0.02
Matches are distributed among these distances:
948 4 0.00
949 134 0.10
950 178 0.14
951 900 0.69
952 78 0.06
953 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (950 bp):
ATATTGATGCTTTGGTTTCGCAAGAAACACTTTTTTCCCACCAATTTTTGTAAATTCTAAGTTCG
TGCCTCAAATGAGACAAGCATGGATTCTTGTAAGGATCTTCATTCATTTCATGATTAGGCACTAT
AAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCGTGGAAATCTTTTCTT
TGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCATAAAAG
TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGAT
GCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTATTGATAGAATCAAAGTTGTCTCTTAA
ATAAGACAAACTTGAATACTCATACTAATCCCCATTCTTTTCAGATTAGGCACCATAAACATAGT
CTTCCCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGATACACTTTCTTCCCACCAATT
TTTGTAAAGGATAAGTTCATTCCATAAATGAGACAAACATGGATTCTAATAAGGATCCTCATTCA
ATTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTT
TGCATGGAAATCTTTTCTTTGCATCGTTTTCCTTAAAATAAAAGTTTATACTTTAAATGAGACAT
GCATTGATTCTCATAAAAGTCTCCATTCTTTCTAAAATAGGGAACCAAAAACACATGCCCTCTAT
TAGGATACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCACCATTATTGATAG
AATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATTCTTTTCTGG
ATTAGGCACCATAAACATAGTCTTCTAATAAGGATACATG
Found at i:82327 original size:30 final size:30
Alignment explanation
Indices: 82178--82669 Score: 401
Period size: 30 Copynumber: 16.0 Consensus size: 30
82168 GCTTCAAATC
* * *
82178 TCTCTTTTCCAAGTACACGACTTAGTGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCA
* * * *
82208 TCCTTTTCTTCCAAGTCCATGACTCAGTAGCA
1 T-CTCTT-TTCAAAGTCCACGACTCAGTGGCA
* *
82240 TCTCTTTTCTTCAATGTCCATGACTCAGTGGCAA
1 TCTC--TT-TTCAAAGTCCACGACTCAGTGGC-A
* * * *
82274 TCTCTTCTCAAAGTCTACAACTCAGTGGTA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCA
* *
82304 TCTTTTTTCTAAGTCCACGACTCAGTGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCA
* * * *
82334 TCTTTTCTTCAACA-TCAATGACTTAGTGGCAA
1 TCTCTT-TTCAA-AGTCCACGACTCAGTGGC-A
* *
82366 TCTCTTCTCAAAGTCCACAACTCAGTGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCA
* * *
82396 TCTCTTGTCAAAGTCCACAACTTAGTGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCA
* *
82426 TCTCTTTTCTAAGTCCACGACTCAATGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCA
* ** *
82456 TCCTTTTCTTCCTAGTCCACGACTCAGTTGCA
1 T-CTCTT-TTCAAAGTCCACGACTCAGTGGCA
* * * *
82488 TCTTTTCTTCAAAATCCACGACTTAGTGGTA
1 TCTCTT-TTCAAAGTCCACGACTCAGTGGCA
* * *
82519 TCTCTTCTCAAAGTCCATGACTCAGTGGCG
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCA
* ** * *
82549 TTTCTTCCCAAAGCCCATGACTCAGTGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCA
* *
82579 TCTTTTCTTCAAAGTCCACGACTTAGTGGCA
1 TCTCTT-TTCAAAGTCCACGACTCAGTGGCA
* * *
82610 TCTCTTCTCAAAGTTCATGACTCAGTGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCA
** * *
82640 TCTCTTCCCAAAGTCCAAGACTCCGTGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCA
82670 CCTTGTTCCT
Statistics
Matches: 374, Mismatches: 76, Indels: 24
0.79 0.16 0.05
Matches are distributed among these distances:
30 182 0.49
31 113 0.30
32 51 0.14
33 23 0.06
34 5 0.01
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.33
Consensus pattern (30 bp):
TCTCTTTTCAAAGTCCACGACTCAGTGGCA
Found at i:82362 original size:61 final size:61
Alignment explanation
Indices: 82178--82669 Score: 436
Period size: 61 Copynumber: 8.0 Consensus size: 61
82168 GCTTCAAATC
* * * * * *
82178 TCTCTTTTCCAAGTACACGACTTAGTGGCATCCTTTTCTTCCAAGTCCATGACTCAGTAGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCAT-CTTTTCTTCAAAGTCCACGACTCAGTGGCA
* * * * * *
82240 TCTCTTTTCTTCAATGTCCATGACTCAGTGGCAATCTCTTC-TCAAAGTCTACAACTCAGTGGTA
1 TCTC--TT-TTCAAAGTCCACGACTCAGTGGC-ATCTTTTCTTCAAAGTCCACGACTCAGTGGCA
* * * * *
82304 TCTTTTTTCTAAGTCCACGACTCAGTGGCATCTTTTCTTCAACA-TCAATGACTTAGTGGCAA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAA-AGTCCACGACTCAGTGGC-A
* * * * * *
82366 TCTCTTCTCAAAGTCCACAACTCAGTGGCATCTCTT-GTCAAAGTCCACAACTTAGTGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGCA
* * ** *
82426 TCTCTTTTCTAAGTCCACGACTCAATGGCATCCTTTTCTTCCTAGTCCACGACTCAGTTGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCAT-CTTTTCTTCAAAGTCCACGACTCAGTGGCA
* * * * * * *
82488 TCTTTTCTTCAAAATCCACGACTTAGTGGTATCTCTTC-TCAAAGTCCATGACTCAGTGGCG
1 TCTCTT-TTCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGCA
* ** * * *
82549 TTTCTTCCCAAAGCCCATGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTTAGTGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGCA
* * * * * * *
82610 TCTCTTCTCAAAGTTCATGACTCAGTGGCATCTCTTC-CCAAAGTCCAAGACTCCGTGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGCA
82670 CCTTGTTCCT
Statistics
Matches: 342, Mismatches: 76, Indels: 26
0.77 0.17 0.06
Matches are distributed among these distances:
60 78 0.23
61 130 0.38
62 67 0.20
63 20 0.06
64 22 0.06
65 23 0.07
66 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.33
Consensus pattern (61 bp):
TCTCTTTTCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGCA
Found at i:82599 original size:91 final size:91
Alignment explanation
Indices: 82188--82669 Score: 504
Period size: 91 Copynumber: 5.2 Consensus size: 91
82178 TCTCTTTTCC
* * * * * *
82188 AAGTACACGACTTAGTGGCATCCTTTTCTTCCAAGTCCATGACTCAGTAGCATCTCTTTTCTTCA
1 AAGTCCACGACTCAGTGGCAT-CTTTTCTTCAAAGTCCACGACTTAGTGGCATCTC--TTC-TCA
* *
82253 ATGTCCATGACTCAGTGGCAATCTCTTCTCA
62 AAGTCCATGACTCAGTGGC-ATCTCTTCCCA
* * * * * *
82284 AAGTCTACAACTCAGTGGTATCTTTT-TTCTAAGTCCACGACTCAGTGGCATCTTTTCTTCAACA
1 AAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTTAGTGGCATCTCTTC-TCAA-A
* * *
82348 -TCAATGACTTAGTGGCAATCTCTTCTCA
64 GTCCATGACTCAGTGGC-ATCTCTTCCCA
* * * * * *
82376 AAGTCCACAACTCAGTGGCATCTCTT-GTCAAAGTCCACAACTTAGTGGCATCTCTTTTCTAAGT
1 AAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTTAGTGGCATCTCTTCTCAAAGT
* * *
82440 CCACGACTCAATGGCATCCTTTTCTTCC-
66 CCATGACTCAGTGGCAT-CTCTTC--CCA
* * * *
82468 TAGTCCACGACTCAGTTGCATCTTTTCTTCAAAATCCACGACTTAGTGGTATCTCTTCTCAAAGT
1 AAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTTAGTGGCATCTCTTCTCAAAGT
* *
82533 CCATGACTCAGTGGCGTTTCTTCCCA
66 CCATGACTCAGTGGCATCTCTTCCCA
* *
82559 AAGCCCATGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTTAGTGGCATCTCTTCTCAAAGT
1 AAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTTAGTGGCATCTCTTCTCAAAGT
*
82624 TCATGACTCAGTGGCATCTCTTCCCA
66 CCATGACTCAGTGGCATCTCTTCCCA
* *
82650 AAGTCCAAGACTCCGTGGCA
1 AAGTCCACGACTCAGTGGCA
82670 CCTTGTTCCT
Statistics
Matches: 324, Mismatches: 55, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
90 5 0.02
91 119 0.37
92 108 0.33
93 47 0.15
94 24 0.07
95 5 0.02
96 16 0.05
ACGTcount: A:0.24, C:0.28, G:0.15, T:0.33
Consensus pattern (91 bp):
AAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTTAGTGGCATCTCTTCTCAAAGT
CCATGACTCAGTGGCATCTCTTCCCA
Found at i:82696 original size:33 final size:33
Alignment explanation
Indices: 82650--83666 Score: 827
Period size: 34 Copynumber: 30.8 Consensus size: 33
82640 TCTCTTCCCA
*
82650 AAGTCCA-AGACTCCGTGGCACCTTGTTCCTTTT
1 AAGTCCACA-ACTCCGTGGCACCTTTTTCCTTTT
** *
82683 AAGTCCACAACTCCGTGGCAGTTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
82716 AAAGCCCACAACTCCGTGGCACTTTTTTTCCTTTT
1 -AAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTT
*
82751 AAGTCCACAACTCCGTGGCAAC-----CCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* ** **
82779 AAGTCCATAACTTTGTGGCACCTTTCTCTTTTTTTT
1 AAGTCCACAACTCCGTGGCACC-TT-T-TTCCTTTT
* *
82815 AAAGCCCACAACTCCGTGGTACTCTTTTTCCTTTT
1 -AAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTT
*
82850 AAGTCCACAACTCCGTGGCACCTTCTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* **
82883 AAGTCCACAACTCTGTGGCACCTTTCTCTTTTTCTT
1 AAGTCCACAACTCCGTGGCACCTTT-T-TCCTT-TT
* * * *
82919 AAAGCCCACAACTTCATGGTACTCTTTTTCCTTTT
1 -AAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTT
* * *
82954 AAGTCCACAACTCCATGGCACCTTCTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
82987 AAGTCCACAATTCCGTGGCACCTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
83020 AAAG-CCTGCAACTCTGTGGCACTCTTTTTCC-TTT
1 -AAGTCC-ACAACTCCGTGGCAC-CTTTTTCCTTTT
* *
83054 AAGTCCATAACTCCGTTGCA-C-----CCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
83081 AAGTCCACAACTCTGTGGCACCTTTTTCTTTTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTC---CTTTT
* * * **
83117 AAAGCCCAAAACACTATGGCACTCTTTTTCCTTTT
1 -AAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTT
* *
83152 AAGTCCATAACTCCGTGGCACCTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * *
83185 AAGTACACAATTCCGTGGCACCCTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCA-CCTTTTTCCTTTT
* * *
83219 AAAGCCCATAACTCTGTGGCACTCTTTTTCCTTTT
1 -AAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTT
*
83254 AAGTCCACCAACTCTGTGGCA-C-----CCTTTT
1 AAGTCCA-CAACTCCGTGGCACCTTTTTCCTTTT
**
83282 AAGTCCACAACTCTATGGCACCTTTTT-CTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * *
83314 AAAGCCCACAACTTCGTGACACTCTTTTTCC-TTT
1 -AAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTT
* * *
83348 AAGTCCACAAACTCCATGGCACCTTGTTCATTTT
1 AAGTCCAC-AACTCCGTGGCACCTTTTTCCTTTT
* * *
83382 AAGTCCACAATTCTGTGGCACCTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
83415 AAAGCCCACAACTCCGTGGCACTTTTTTTCCTTTT
1 -AAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTT
*
83450 AAGTCCACAACTCCATGGCA-C-----CCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
*
83477 AAGTCCAC-ACTCCGTGGCACCTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
83509 AAGTCCATAACTCCGTGGCACC-TTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * * *
83541 AAGTCTACAACTTCGTGGCACCCTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
83574 AAGTCTACAACTTCGTGGCACCCTTTTTCCTTTT
1 AAGTCCACAACTCCGTGGCA-CCTTTTTCCTTTT
** * * * *
83608 AAACCCACACCTCCATGGCATCCCCTTTTCC-TAT
1 AAGTCCACAACTCCGTGGCA--CCTTTTTCCTTTT
*
83642 AAGTCCACAACTCTGTGGCACCTTT
1 AAGTCCACAACTCCGTGGCACCTTT
83667 AAGCCCAATA
Statistics
Matches: 794, Mismatches: 129, Indels: 123
0.76 0.12 0.12
Matches are distributed among these distances:
26 12 0.02
27 47 0.06
28 39 0.05
31 1 0.00
32 49 0.06
33 238 0.30
34 239 0.30
35 91 0.11
36 14 0.02
37 52 0.07
38 12 0.02
ACGTcount: A:0.20, C:0.30, G:0.12, T:0.37
Consensus pattern (33 bp):
AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
Found at i:83040 original size:67 final size:66
Alignment explanation
Indices: 82650--83666 Score: 809
Period size: 67 Copynumber: 15.4 Consensus size: 66
82640 TCTCTTCCCA
* **
82650 AAGTCCA-AGACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCAGTTTTTTCTTT
1 AAGTCCACA-ACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTT
82714 TT
65 TT
* *
82716 AAAGCCCACAACTCCGTGGCACTTTTTTTCCTTTTAAGTCCACAACTCCGTGGCAACC-----C-
1 -AAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTTAAGTCCACAACTCCGTGGC-ACCTTTTTCT
82775 TTTT
63 TTTT
* ** ** * *
82779 AAGTCCATAACTTTGTGGCACCTTTCTCTTTTTTTTAAAGCCCACAACTCCGTGGTACTCTTTTT
1 AAGTCCACAACTCCGTGGCACC-TT-T-TTCCTTTT-AAGTCCACAACTCCGTGGCAC-CTTTTT
*
82844 CCTTTT
61 CTTTTT
* * *
82850 AAGTCCACAACTCCGTGGCACCTTCTTCCTTTTAAGTCCACAACTCTGTGGCACCTTTCTCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTT-T-TCTT
82915 TCTT
64 T-TT
* * * * * *
82919 AAAGCCCACAACTTCATGGTACTCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCTTCTTCTT
1 -AAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTT
82984 TTT
64 TTT
* * * *
82987 AAGTCCACAATTCCGTGGCACCTTTTTCTTTTTAAAG-CCTGCAACTCTGTGGCACTCTTTTTC-
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT-AAGTCC-ACAACTCCGTGGCAC-CTTTTTCT
*
83050 CTTT
63 TTTT
* * *
83054 AAGTCCATAACTCCGTTGCA-C-----CCTTTTAAGTCCACAACTCTGTGGCACCTTTTTCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTC---T
83113 TTTT
63 TTTT
* * * ** * * *
83117 AAAGCCCAAAACACTATGGCACTCTTTTTCCTTTTAAGTCCATAACTCCGTGGCACCTTGTTCCT
1 -AAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTT
83182 TTT
64 TTT
* * * * * * *
83185 AAGTACACAATTCCGTGGCACCCTTTTTCTTTTTAAAGCCCATAACTCTGTGGCACTCTTTTTCC
1 AAGTCCACAACTCCGTGGCA-CCTTTTTCCTTTT-AAGTCCACAACTCCGTGGCAC-CTTTTTCT
83250 TTTT
63 TTTT
* **
83254 AAGTCCACCAACTCTGTGGCA-C-----CCTTTTAAGTCCACAACTCTATGGCACCTTTTTCTTT
1 AAGTCCA-CAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTT
*
83313 TA
65 TT
* * * * * *
83315 AAGCCCACAACTTCGTGACACTCTTTTTCC-TTTAAGTCCACAAACTCCATGGCACCTTGTTCAT
1 AAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTTAAGTCCAC-AACTCCGTGGCACCTTTTTCTT
83379 TTT
64 TTT
* * * * * *
83382 AAGTCCACAATTCTGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTTTTTTTCCT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT-AAGTCCACAACTCCGTGGCAC-CTTTTTCTT
83447 TTT
64 TTT
* * *
83450 AAGTCCACAACTCCATGGCA-C-----CCTTTTAAGTCCAC-ACTCCGTGGCACCTTGTTCCTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTT
83508 T
66 T
* * * * *
83509 AAGTCCATAACTCCGTGGCACC-TTTTCTTTTTAAGTCTACAACTTCGTGGCACCCTTTTCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTT
83573 T
66 T
* * ** * * *
83574 AAGTCTACAACTTCGTGGCACCCTTTTTCCTTTTAAACCCACACCTCCATGGCATCCCCTTTTC-
1 AAGTCCACAACTCCGTGGCA-CCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA--CCTTTTTCT
* *
83638 CTAT
63 TTTT
*
83642 AAGTCCACAACTCTGTGGCACCTTT
1 AAGTCCACAACTCCGTGGCACCTTT
83667 AAGCCCAATA
Statistics
Matches: 760, Mismatches: 130, Indels: 120
0.75 0.13 0.12
Matches are distributed among these distances:
59 35 0.05
60 40 0.05
61 30 0.04
62 43 0.06
63 13 0.02
64 35 0.05
65 55 0.07
66 39 0.05
67 195 0.26
68 124 0.16
69 32 0.04
70 32 0.04
71 87 0.11
ACGTcount: A:0.20, C:0.30, G:0.12, T:0.37
Consensus pattern (66 bp):
AAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTT
T
Found at i:83086 original size:27 final size:27
Alignment explanation
Indices: 83051--83107 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
83041 CTCTTTTTCC
* *
83051 TTTAAGTCCATAACTCCGTTGCACCCT
1 TTTAAGTCCACAACTCCGTGGCACCCT
* *
83078 TTTAAGTCCACAACTCTGTGGCACCTT
1 TTTAAGTCCACAACTCCGTGGCACCCT
83105 TTT
1 TTT
83108 CTTTTTTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.21, C:0.30, G:0.12, T:0.37
Consensus pattern (27 bp):
TTTAAGTCCACAACTCCGTGGCACCCT
Found at i:83300 original size:27 final size:28
Alignment explanation
Indices: 83248--83308 Score: 97
Period size: 27 Copynumber: 2.2 Consensus size: 28
83238 CACTCTTTTT
*
83248 CCTTTTAAGTCCACCAACTCTGTGGCAC
1 CCTTTTAAGTCCACCAACTCTATGGCAC
83276 CCTTTTAAGTCCA-CAACTCTATGGCAC
1 CCTTTTAAGTCCACCAACTCTATGGCAC
*
83303 CTTTTT
1 CCTTTT
83309 CTTTTAAAGC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 18 0.58
28 13 0.42
ACGTcount: A:0.21, C:0.33, G:0.11, T:0.34
Consensus pattern (28 bp):
CCTTTTAAGTCCACCAACTCTATGGCAC
Found at i:83495 original size:26 final size:27
Alignment explanation
Indices: 83444--83497 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
83434 CACTTTTTTT
83444 CCTTTTAAGTCCACAACTCCATGGCAC
1 CCTTTTAAGTCCACAACTCCATGGCAC
*
83471 CCTTTTAAGTCCAC-ACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCATGGCAC
83497 C
1 C
83498 TTGTTCCTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 12 0.46
27 14 0.54
ACGTcount: A:0.22, C:0.39, G:0.13, T:0.26
Consensus pattern (27 bp):
CCTTTTAAGTCCACAACTCCATGGCAC
Found at i:83736 original size:49 final size:49
Alignment explanation
Indices: 83663--84280 Score: 497
Period size: 49 Copynumber: 12.7 Consensus size: 49
83653 TCTGTGGCAC
* * ** *
83663 CTTTAAGCCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTCAT
1 CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCAT
* * *
83712 CTTTAAGACCGATGTTGTTGGCCTTGAATCAGCACATTGGCACCTTAACCAT
1 CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTT---CAT
* * * *
83764 CATTAAGTCCAATGTCGTCGGCCTTGAATCAGCACATTGGCATCTTCAA
1 CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCAT
* * * * * *
83813 CTTTAAGTCCGATATCGCTGGCCTTGAATCAACATATTGGCACCTTTAT
1 CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCAT
* ** *
83862 CTTTAAGACCAATGTCACTGGCCTTGAATTAGCACATTGGCACCTTAACCAT
1 CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTT---CAT
**** * * *
83914 CTTTAAGTCCAATGTTACCGGCCTTGAATCAACACATTAGCATCTTCAT
1 CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCAT
* * * *
83963 CTTTAAGTCCGATATCGTTGGCCTTGAATCAGCATATTGGCACCTTTAT
1 CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCAT
* * * *
84012 CTTTAAGACCAATGTCATTGTCCTTGAATCAACACATTGG------CA-
1 CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCAT
* * * * * *
84054 C---AAGCCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTTAT
1 CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCAT
* * * *
84100 CTTTAAGACTAATGTCATTGGCCTTAAATCAGCACATTGGCACCTTCAT
1 CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCAT
* * * **
84149 CTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTAGCATTTTAACAT
1 CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTT--CAT
* * * ** * *
84200 -TCCTAAGCCCAATGTCGCTGGCCTTGTCTCAGCACATTAGCA--TTCTT
1 CT-TTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCAT
* * * *
84247 CTTCAAGTCTAATGTCGCTGGCCATGAATCAGCA
1 CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCA
84281 TAGTGTCATT
Statistics
Matches: 451, Mismatches: 98, Indels: 42
0.76 0.17 0.07
Matches are distributed among these distances:
39 30 0.07
42 1 0.00
43 1 0.00
45 1 0.00
46 1 0.00
47 27 0.06
48 1 0.00
49 268 0.59
50 1 0.00
51 36 0.08
52 84 0.19
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.32
Consensus pattern (49 bp):
CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCAT
Found at i:83840 original size:101 final size:98
Alignment explanation
Indices: 83682--84182 Score: 477
Period size: 101 Copynumber: 5.2 Consensus size: 98
83672 CAATATCACT
* * *** *
83682 GGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGACCGATGTTGTTGGCCTTGAATCAGCAC
1 GGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTCACTGGCCTTGAATCAACAC
*
83747 ATTGGCACCTTAACCATCATTAAGTCCAATGTCGTC
66 ATTGGCACCTT---CATCTTTAAGTCCAATGTCGTC
* * * * * * *
83783 GGCCTTGAATCAGCACATTGGCATCTTCAACTTTAAGTCCGATATCGCTGGCCTTGAATCAACAT
1 GGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTCACTGGCCTTGAATCAACAC
* * *
83848 ATTGGCACCTTTATCTTTAAGACCAATGTC-AC
66 ATTGGCACCTTCATCTTTAAGTCCAATGTCGTC
* * * *
83880 TGGCCTTGAATTAGCACATTGGCACCTTAACCATCTTTAAGTCCAATGTTACCGGCCTTGAATCA
1 -GGCCTTGAATCAGCACATTGGCACCTT---CATCTTTAAGACCAATGTCACTGGCCTTGAATCA
* * * * *
83945 ACACATTAGCATCTTCATCTTTAAGTCCGATATCGTT
62 ACACATTGGCACCTTCATCTTTAAGTCCAATGTCGTC
* * * *
83982 GGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCATTGTCCTTGAATCAACAC
1 GGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTCACTGGCCTTGAATCAACAC
* *
84047 ATTGG------CA-C---AAGCCCAATATCG-C
66 ATTGGCACCTTCATCTTTAAGTCCAATGTCGTC
* * * * * * *
84069 TGGCCTTGAATCAACATATTGGCACCTTTATCTTTAAGACTAATGTCATTGGCCTTAAATCAGCA
1 -GGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTCACTGGCCTTGAATCAACA
* *
84134 CATTGGCACCTTCATCTTTAAGTCCAATATCGTT
65 CATTGGCACCTTCATCTTTAAGTCCAATGTCGTC
84168 GGCCTTGAATCAGCA
1 GGCCTTGAATCAGCA
84183 TATTAGCATT
Statistics
Matches: 333, Mismatches: 50, Indels: 37
0.79 0.12 0.09
Matches are distributed among these distances:
88 76 0.23
91 1 0.00
92 2 0.01
94 2 0.01
95 1 0.00
97 1 0.00
98 103 0.31
101 147 0.44
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (98 bp):
GGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTCACTGGCCTTGAATCAACAC
ATTGGCACCTTCATCTTTAAGTCCAATGTCGTC
Found at i:83936 original size:150 final size:150
Alignment explanation
Indices: 83663--84054 Score: 604
Period size: 150 Copynumber: 2.6 Consensus size: 150
83653 TCTGTGGCAC
* * * * * *
83663 CTTTAAGCCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGACCGATGTT
1 CTTTAAGTCCGATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTC
* **
83728 GTTGGCCTTGAATCAGCACATTGGCACCTTAACCATCATTAAGTCCAATGTCGTCGGCCTTGAAT
66 ATTGGCCTTGAATCAGCACATTGGCACCTTAACCATCATTAAGTCCAATGTCACCGGCCTTGAAT
* *
83793 CAGCACATTGGCATCTTCAA
131 CAACACATTAGCATCTTCAA
*
83813 CTTTAAGTCCGATATCGCTGGCCTTGAATCAACATATTGGCACCTTTATCTTTAAGACCAATGTC
1 CTTTAAGTCCGATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTC
* * * *
83878 ACTGGCCTTGAATTAGCACATTGGCACCTTAACCATCTTTAAGTCCAATGTTACCGGCCTTGAAT
66 ATTGGCCTTGAATCAGCACATTGGCACCTTAACCATCATTAAGTCCAATGTCACCGGCCTTGAAT
*
83943 CAACACATTAGCATCTTCAT
131 CAACACATTAGCATCTTCAA
*
83963 CTTTAAGTCCGATATCGTTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTC
1 CTTTAAGTCCGATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTC
* *
84028 ATTGTCCTTGAATCAACACATTGGCAC
66 ATTGGCCTTGAATCAGCACATTGGCAC
84055 AAGCCCAATA
Statistics
Matches: 219, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
150 219 1.00
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.32
Consensus pattern (150 bp):
CTTTAAGTCCGATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTC
ATTGGCCTTGAATCAGCACATTGGCACCTTAACCATCATTAAGTCCAATGTCACCGGCCTTGAAT
CAACACATTAGCATCTTCAA
Found at i:84130 original size:88 final size:88
Alignment explanation
Indices: 83974--84142 Score: 284
Period size: 88 Copynumber: 1.9 Consensus size: 88
83964 TTTAAGTCCG
* * * *
83974 ATATCGTTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCATTGTCCTTGA
1 ATATCGCTGGCCTTGAATCAACATATTGGCACCTTTATCTTTAAGACCAATGTCATTGGCCTTAA
84039 ATCAACACATTGGCACAAGCCCA
66 ATCAACACATTGGCACAAGCCCA
*
84062 ATATCGCTGGCCTTGAATCAACATATTGGCACCTTTATCTTTAAGACTAATGTCATTGGCCTTAA
1 ATATCGCTGGCCTTGAATCAACATATTGGCACCTTTATCTTTAAGACCAATGTCATTGGCCTTAA
*
84127 ATCAGCACATTGGCAC
66 ATCAACACATTGGCAC
84143 CTTCATCTTT
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 75 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.31
Consensus pattern (88 bp):
ATATCGCTGGCCTTGAATCAACATATTGGCACCTTTATCTTTAAGACCAATGTCATTGGCCTTAA
ATCAACACATTGGCACAAGCCCA
Found at i:84174 original size:137 final size:137
Alignment explanation
Indices: 83933--84179 Score: 350
Period size: 137 Copynumber: 1.8 Consensus size: 137
83923 CAATGTTACC
* * * * * *
83933 GGCCTTGAATCAACACATTAGCATCTTCATCTTTAAGTCCGATATCGTTGGCCTTGAATCAGCAT
1 GGCCTTGAATCAACACATTAGCACCTTCATCTTTAAGACCAATATCATTGGCCTTAAATCAGCAC
* * *
83998 ATTGGCACCTTTATCTTTAAGACCAATGTCATTGTCCTTGAATCAACACATTGGCACAAGCCCAA
66 ATTGGCACCTTCATCTTTAAGACCAATATCATTGGCCTTGAATCAACACATTGGCACAAGCCCAA
84063 TATCGCT
131 TATCGCT
* * * * *
84070 GGCCTTGAATCAACATATTGGCACCTTTATCTTTAAGACTAATGTCATTGGCCTTAAATCAGCAC
1 GGCCTTGAATCAACACATTAGCACCTTCATCTTTAAGACCAATATCATTGGCCTTAAATCAGCAC
* *
84135 ATTGGCACCTTCATCTTTAAGTCCAATATCGTTGGCCTTGAATCA
66 ATTGGCACCTTCATCTTTAAGACCAATATCATTGGCCTTGAATCA
84180 GCATATTAGC
Statistics
Matches: 94, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
137 94 1.00
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (137 bp):
GGCCTTGAATCAACACATTAGCACCTTCATCTTTAAGACCAATATCATTGGCCTTAAATCAGCAC
ATTGGCACCTTCATCTTTAAGACCAATATCATTGGCCTTGAATCAACACATTGGCACAAGCCCAA
TATCGCT
Found at i:85117 original size:20 final size:20
Alignment explanation
Indices: 85092--85146 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
85082 TTGCCAAGGA
85092 AATGTATCGATACATT-ATTC
1 AATGTATCGATACATTGA-TC
85112 AATGTATCGATACATTGATC
1 AATGTATCGATACATTGATC
**
85132 TTTGTATCGATACAT
1 AATGTATCGATACAT
85147 CTGGGAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.40
Consensus pattern (20 bp):
AATGTATCGATACATTGATC
Found at i:91038 original size:935 final size:935
Alignment explanation
Indices: 87948--91527 Score: 5293
Period size: 935 Copynumber: 3.8 Consensus size: 935
87938 AAGGATGCAT
* * * * * * * * *
87948 GATATTGATGCTTTGGTTTCGCAAGAAACACTTTCTTCCAACCATTTTTGTACATTCTAAGTTTG
1 GATATTGATGATTTGGTTTCACTAGAAACGCTTTTTTCCCACAATTTTTGTAGATTCTATGTTTG
* *
88013 TGCCTC-AATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTCGTGATTAGGCACTATA
66 TGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCATCATTCATTCATGATTAGGCACTATA
* * ** *
88077 AACACATTCTCCT-CATTAGGATAAAAGATATTTATGGTTTTCTTTTGCATGGAAATCTTTT-TT
131 AACACATTCTCCTCCA-CAAGATGCAAGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTT
* * *
88140 TGACTTGTTTTCCTTAAAATC-AAGTTTGTACTTTAAATGAGACATGCA-TGATTCTCCGTAAGA
195 TG-CCTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCT-CGTAAAA
* * *
88203 GTCTCCATTCTTT-TCAGAT-TGGGAACCAA-AATACATTCCCT-TCAATAGGATACATGACA-T
258 GTCTCCATTCTTTCT-A-ATATGGGAACCAATAACACATTCCCTAT-ATTATGATACATGACATT
* * * * * * ** * *
88263 GATGCTTTGGTGTCGCGAGAGAAGGTGTTCTCCCCACCATTATTGAAAGAATCAAAGTTTGTCTC
320 GATGCTTTGGCGTCACAAGAAAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTC
* * * * * * *
88328 TTAAATAAGATAAACATGAATAGTCATACTAATCCACTTTTTTTTCTAGATTAGGCACTATAAAC
385 CTAAATAAGACAAACATGAATACTCACACTAATCCACATTCTTTTCTAGATTAGGCACCATAAAC
* * ** * *
88393 ATAGTCTTCTCATCA-GGATACATGAT-TTGATGCTTTGGTTTCATAAGAAATGCTTTCTTCCCA
450 ATAGTCTTCTAAT-AGGGATACATGATATTGATGCTATGGTTTCGCAAGAAACGCTTTCTTCCAA
* * * * * * * *
88456 CTAATTTTTGT-AAGTATAAGTTCAT-TCTTAAATGAGACAAACATGGAAGTCCTAGCAAGGATC
514 CCAATTTTTGTAAACTCTAAGTTCGTGCCTCAAATGAGACAAACATGG-A-TTCTAGTAAGGATC
*
88519 TTCATTCATTTCAG-GATTAGGCACTATAAACACATTATCCCCAATAGGATAAATGATACTGATG
577 TTCATTCATTTC-GTGATTAGGCACTATAAACACATTCTCCCCAATAGGATAAATGATACTGATG
*
88583 TTTTTCTTTTGCCTGGAAATCTTTTCTTTGCCTCACTTTCC-T-AAATCAAAGTTTGAACTCTAA
641 GTTTTCTTTTGCCTGGAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGAACTCTAA
* * ** *
88646 ATGAGACAAGCAATGATTCTC-AAAAAGTCTCCATTCGTTCTTAGATGGGGAAGCCAAAAAC-CA
706 ATGAGACAAGCAATTATTCTCGTAAAAGTCTCCATTCGTTCCAAGATTGGGAA-CCAAAAACACA
*
88709 TTCCCTCTATTAGGATACATGACATTGATGCTTTTGTGTCGC-AGAGAAAGCTTTTCTTTCCAAC
770 TT-CC-C--------T---TGACATTGATGCTTTGGTGTCGCAAGAG-AAGCTTTTCTTTCCAAC
* * *
88773 ATTATTGACAAAGTCAAAGTTTGTCTCTTAAATAAGGCAAACTTGAATACTCATAGTAATCCCCA
821 GTTATTGATAAAGCCAAAGTTTGTCTCTTAAATAAGGCAAACTTGAATACTCATAGTAATCCCCA
*
88838 TTATTTTCAGGATTCGGCACCATAAACAGAGTCTTCTTATACGGATACAG
886 TTATTTTCAGGATTCGGCATCATAAACAGAGTCTTCTTATACGGATACAG
* *
88888 GATATTGATGATTTGGTTTCGCTAGAAATGCTTTTTTCCCACAAAATTTTTGTAGATTCTATG-T
1 GATATTGATGATTTGGTTTCACTAGAAACGCTTTTTTCCCAC--AATTTTTGTAGATTCTATGTT
* * *
88952 CGTGCCTTAAATGAGACAAACAAGGATTCTAGTAAGGATCATCATTCATTCATGATTAGGCACTA
64 TGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCATCATTCATTCATGATTAGGCACTA
* ** * *
89017 TAAACACATTCTTCTCTTCAGGATGCAAGATATTGATGGTTTTC-TTTGCATGGAAATCTTTTCC
129 TAAACACATTCTCCTCCACAAGATGCAAGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCT
* *
89081 TTGCCTAATTTCCTT-AAATCAAAGTTTGTACTTTAAATGAGACCTGCATTGATTCTCGTAAAAG
194 TTGCCTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAG
89145 TCTCCATTCTTTCTAATATGGGAACCAATAACACATTCCCTATATTATGATACATGACATTGATG
259 TCTCCATTCTTTCTAATATGGGAACCAATAACACATTCCCTATATTATGATACATGACATTGATG
**
89210 CTTTGGCGTCACAAGAAAATATTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCCTAA
324 CTTTGGCGTCACAAGAAAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCCTAA
* * *
89275 ATAAGACAAAAATGAATACTCACACTACTCCACATTCTTTTCTATATTAGGCACCATAAACATAG
389 ATAAGACAAACATGAATACTCACACTAATCCACATTCTTTTCTAGATTAGGCACCATAAACATAG
*
89340 TCTTCTAATAGGGATACATG--ATTGATGCTATGGTTTCGCAAGAAACGCTTTCTTTCAACCAAT
454 TCTTCTAATAGGGATACATGATATTGATGCTATGGTTTCGCAAGAAACGCTTTCTTCCAACCAAT
89403 TTTTGTAAACTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTC
519 TTTTGTAAACTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTC
* * * *
89468 ATTTTGTGATTGGGCACTCTAAACACATTCTCCCCAATAGGATAAATGATATTGATGGTTTTCTT
584 ATTTCGTGATTAGGCACTATAAACACATTCTCCCCAATAGGATAAATGATACTGATGGTTTTCTT
89533 TTGCCTGGAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGAACTCTAAATGAGACA
649 TTGCCTGGAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGAACTCTAAATGAGACA
* *
89598 AGCAATCATTCTCGTAAAAGTCTCTATTCGTTCCAAGATTGGGAACCAAAAACACATTCCCTTGA
714 AGCAATTATTCTCGTAAAAGTCTCCATTCGTTCCAAGATTGGGAACCAAAAACACATTCCCTTGA
89663 CATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTATTGATAAAGCCAAAGTTTG
779 CATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTATTGATAAAGCCAAAGTTTG
*
89728 TCTCTTAAATAAGGCAAACTTGAATACTCATAGTAATCCCCATTATTTTCAGGATTTGGCATCAT
844 TCTCTTAAATAAGGCAAACTTGAATACTCATAGTAATCCCCATTATTTTCAGGATTCGGCATCAT
89793 AAACAGAGTCTTCTTATACGGATACAG
909 AAACAGAGTCTTCTTATACGGATACAG
*
89820 GATATTGATGATTTGGTTTCACTAGAGACGCTTTTTTCCCACAATTTTTGTAGATTCTATGTTTG
1 GATATTGATGATTTGGTTTCACTAGAAACGCTTTTTTCCCACAATTTTTGTAGATTCTATGTTTG
**
89885 TGCCTCAAATGAGGTAAACATGGATTCTAGTAAGGATCATCATTCATTTCATGATTAGGCACTAT
66 TGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCATCATTCA-TTCATGATTAGGCACTAT
* *
89950 -AA-ACATTCTCCTCCACAAGATGCATGATATTGATGGTTTTCTTTTGCATGGACATCTTTTCTT
130 AAACACATTCTCCTCCACAAGATGCAAGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTT
90013 TGCCTAATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAG
195 TGCCT-ATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAG
90078 TCTCCATTCTTTCTAATATTGGGAACCAATAACACATTCCCTATATTATGATACATGACATTGAT
259 TCTCCATTCTTTCTAATA-TGGGAACCAATAACACATTCCCTATATTATGATACATGACATTGAT
*
90143 GCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCCT-
323 GCTTTGGCGTCACAAGAAAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCCTA
* *
90207 AATAAGACAAA-ATGAATACTCATACTAATCCACATTCTTTTCTATATTAGGCACCATAAACATA
388 AATAAGACAAACATGAATACTCACACTAATCCACATTCTTTTCTAGATTAGGCACCATAAACATA
*
90271 GTCTTCTAATAGGGATACATGATATTGATGCTATGGTTTCGCAAGAAACGCTTTCTTTCAACCAA
453 GTCTTCTAATAGGGATACATGATATTGATGCTATGGTTTCGCAAGAAACGCTTTCTTCCAACCAA
90336 TTTTTGTAAACTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATT
518 TTTTTGTAAACTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATT
* * *
90401 CATTGCGTGATTAGGCACTCTAAACACATTCTCCCCAATAGGATAAATGATATTGATGGTTTTCT
583 CATTTCGTGATTAGGCACTATAAACACATTCTCCCCAATAGGATAAATGATACTGATGGTTTTCT
90466 TTTGCCTGGAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGAACTCTAAATGAGAC
648 TTTGCCTGGAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGAACTCTAAATGAGAC
* *
90531 AAGCAATCTTTTCTCGTAAAAGTCTCTATTCGTTCCAAGATTGGGAACCAAAAACACATTCCCTT
713 AAGCAAT-TATTCTCGTAAAAGTCTCCATTCGTTCCAAGATTGGGAACCAAAAACACATTCCCTT
90596 GACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTATTGATAAAGCCAAAGTT
777 GACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTATTGATAAAGCCAAAGTT
*
90661 TGTCTCTTAAATAAGGCAAACCTGAATACTCATAGTAATCCCCATTATTTTCAGGATTCGGCATC
842 TGTCTCTTAAATAAGGCAAACTTGAATACTCATAGTAATCCCCATTATTTTCAGGATTCGGCATC
*
90726 ATAAACAGAGTCTTCTTATACGGATATAG
907 ATAAACAGAGTCTTCTTATACGGATACAG
*
90755 GATATTGATGATTTGGTTTCACTAGAGACGCTTTTTTCCCACAATTTTTGTAGATTCTATGTTTG
1 GATATTGATGATTTGGTTTCACTAGAAACGCTTTTTTCCCACAATTTTTGTAGATTCTATGTTTG
*
90820 TGCCTCAAATGAGATAAACATGGATTCTAGTAAGGATCATCATTCATTTCATGATTAGGCACTAT
66 TGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCATCATTCA-TTCATGATTAGGCACTAT
*
90885 AAACACA-TCTCCTCCACAAGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTT
130 AAACACATTCTCCTCCACAAGATGCAAGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTT
* *
90949 TGCCTCATTTTCCTTAAAATCAACGTTTATACTTTAAATGAGACATGCATTGATTCTCGTAAAAG
195 TGCCT-ATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAG
* *
91014 TCTCCATTCTTTCTAATATGGGAACCAAAAACACATTCCCTATATTACGATACATGACATTGATG
259 TCTCCATTCTTTCTAATATGGGAACCAATAACACATTCCCTATATTATGATACATGACATTGATG
* * * * *
91079 CTTTGGCATCATAAGAGAAGCTTTTCTTTCCACTGTTATTGATAGAATCAAAGTTTGTCTCTTAA
324 CTTTGGCGTCACAAGAAAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCCTAA
*
91144 ATAAGACAAACATGAATACTCACACTAATCCACATTCTTTTCTAGAGTAGGCACCATAAACATAG
389 ATAAGACAAACATGAATACTCACACTAATCCACATTCTTTTCTAGATTAGGCACCATAAACATAG
* * * * *
91209 TCTTCAAATAGCGATACATGATATTGATGTTATGTTTTCG-AAGAAAACGCTTTCTTCCCACCAA
454 TCTTCTAATAGGGATACATGATATTGATGCTATGGTTTCGCAAG-AAACGCTTTCTTCCAACCAA
* * *
91273 -TTTTGTAAATTCTATGTTCGTGCCTCAAATGAGACAAACATGGATTCTAG-GAGGATCTTCATT
518 TTTTTGTAAACTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATT
* * * * * *
91336 CATTTCGTGATTAGGCACTATAAAAAGATTCTCCACATTAGGATAAATGATACTGATGCCTTTTT
583 CATTTCGTGATTAGGCACTATAAACACATTCTCCCCAATAGGATAAATGATACTGATG-GTTTTC
* * * * * * *
91401 TTTTGCATGAAAATCTTTTTTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGA
647 TTTTGCCTGGAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGAACTCTAAATGAGA
* * * * *
91466 CATG-TATTGATTCTCATAAAAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCC
712 CAAGCAATT-ATTCTCGTAAAAGTCTCCATTCGTTCCAAGATTGGGAACCAAAAACACATTCC
91528 TTTCATTAGG
Statistics
Matches: 2440, Mismatches: 162, Indels: 81
0.91 0.06 0.03
Matches are distributed among these distances:
930 53 0.02
931 70 0.03
932 286 0.12
933 81 0.03
934 349 0.14
935 556 0.23
936 265 0.11
937 108 0.04
940 43 0.02
941 91 0.04
942 292 0.12
943 146 0.06
944 70 0.03
945 30 0.01
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (935 bp):
GATATTGATGATTTGGTTTCACTAGAAACGCTTTTTTCCCACAATTTTTGTAGATTCTATGTTTG
TGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCATCATTCATTCATGATTAGGCACTATA
AACACATTCTCCTCCACAAGATGCAAGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTT
GCCTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTC
TCCATTCTTTCTAATATGGGAACCAATAACACATTCCCTATATTATGATACATGACATTGATGCT
TTGGCGTCACAAGAAAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCCTAAAT
AAGACAAACATGAATACTCACACTAATCCACATTCTTTTCTAGATTAGGCACCATAAACATAGTC
TTCTAATAGGGATACATGATATTGATGCTATGGTTTCGCAAGAAACGCTTTCTTCCAACCAATTT
TTGTAAACTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCAT
TTCGTGATTAGGCACTATAAACACATTCTCCCCAATAGGATAAATGATACTGATGGTTTTCTTTT
GCCTGGAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGAACTCTAAATGAGACAAG
CAATTATTCTCGTAAAAGTCTCCATTCGTTCCAAGATTGGGAACCAAAAACACATTCCCTTGACA
TTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTATTGATAAAGCCAAAGTTTGTC
TCTTAAATAAGGCAAACTTGAATACTCATAGTAATCCCCATTATTTTCAGGATTCGGCATCATAA
ACAGAGTCTTCTTATACGGATACAG
Found at i:91165 original size:473 final size:475
Alignment explanation
Indices: 87935--91557 Score: 4219
Period size: 473 Copynumber: 7.7 Consensus size: 475
87925 ACGTTGCGAC
* * * * * * * *
87935 AATAAGGATGCATGATATTGATGCTTTGGTTTCGCAAGAAACACTTTCTTCCAACCATTTTTGTA
1 AATACGGATACATGATATTGATGCTTTGGTTTCACTAGAAACGCTTTTTTCCCACAATTTTTGTA
* * *
88000 CATTCTAAGTTTGTGCCTC-AATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCA-TTCGT
66 AATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCAT
* * *
88063 GATTAGGCACTATAAACACATTCTCCT-CA-TTAGGATAAAAGATATTTATGGTTTTCTTTTGCA
131 GATTAGGCACTATAAACACATTCTCCTCCACATAGGATAAATGATATTGATGGTTTTCTTTTGCA
* ** *
88126 TGGAAATCTTTT-TTTGACTTGTTTTCCTTAAAATC-AAGTTTGTACTTTAAATGAGACATGCA-
196 TGGAAATCTTTTCTTTGCCTCATTTTCCTTAAAATCAAAGTTTATACTTTAAATGAGACATGCAT
* * * * *
88188 TGATTCTCCGTAAGAGTCTCCATTCTTT-TCAGATTGGGAACC-AAAATACATTCCCTTCAATAG
261 TGATTCT-CGTAAAAGTCTCCATTCTTTCTAAGATTGGGAACCAAAAACACATTCCCTT-ATTAC
* * * * ** * *
88251 GATACATGACA-TGATGCTTTGGTGTCGCGAGAGAAGGTGTTCTCCCCACCATTATTGAAAGAAT
324 GATACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCA-CGTTATTGATAGAAT
* * * *
88315 CAAAGTTTGTCTCTTAAATAAGATAAACATGAATAGTCATACTAATCCACTTTTTTTTCTAGATT
388 CAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATTATTTTCTAGATT
*
88380 AGGCACTATAAACATAGTCTTCT
453 AGGCACCATAAACATAGTCTTCT
* * *
88403 CAT-CAGGATACATGAT-TTGATGCTTTGGTTTCA-TAAGAAATGCTTTCTTCCCACTAATTTTT
1 AATAC-GGATACATGATATTGATGCTTTGGTTTCACT-AGAAACGCTTTTTTCCCAC-AATTTTT
* * * * * * *
88465 GT-AAGTATAAGTTCAT-TCTTAAATGAGACAAACATGGAAGTCCTAGCAAGGATCTTCATTCAT
63 GTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGG-A-TTCTAGTAAGGATCTTCATTCAT
* * * *
88528 TTCAGGATTAGGCACTATAAACACATTATCC-CCA-ATAGGATAAATGATACTGATGTTTTTCTT
126 TTCATGATTAGGCACTATAAACACATTCTCCTCCACATAGGATAAATGATATTGATGGTTTTCTT
* * *
88591 TTGCCTGGAAATCTTTTCTTTGCCTCACTTTCC-T-AAATCAAAGTTTGA-ACTCTAAATGAGAC
191 TTGCATGGAAATCTTTTCTTTGCCTCATTTTCCTTAAAATCAAAGTTT-ATACTTTAAATGAGAC
* * * * * *
88653 AAGCAATGATTCTC-AAAAAGTCTCCATTCGTTCTTAGATGGGGAAGCCAAAAAC-CATTCCCTC
255 ATGCATTGATTCTCGTAAAAGTCTCCATTCTTTCTAAGATTGGGAA-CCAAAAACACATTCCCT-
* * * *
88716 TATTAGGATACATGACATTGATGCTTTTGTGTCGC-AGAGAAAGCTTTTCTTTCCAACATTATTG
318 TATTACGATACATGACATTGATGCTTTGGTGTCACAAGAG-AAGCTTTTCTTTCC-ACGTTATTG
* * * * *
88780 ACA-AAGTCAAAGTTTGTCTCTTAAATAAGGCAAACTTGAATACTCATAGTAATCCCCATTATTT
381 ATAGAA-TCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATTATTT
* *
88844 TC-AGGATTCGGCACCATAAACAGAGTCTTCT
445 TCTA-GATTAGGCACCATAAACATAGTCTTCT
* * * * *
88875 TATACGGATACAGGATATTGATGATTTGGTTTCGCTAGAAATGCTTTTTTCCCACAAAATTTTTG
1 AATACGGATACATGATATTGATGCTTTGGTTTCACTAGAAACGCTTTTTTCCCAC--AATTTTTG
* * * * *
88940 TAGATTCTATG-TCGTGCCTTAAATGAGACAAACAAGGATTCTAGTAAGGATCATCATTCA-TTC
64 TAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTC
* ** *
89003 ATGATTAGGCACTATAAACACATTCTTCTCTTC--AGGATGCAA-GATATTGATGGTTTTC-TTT
129 ATGATTAGGCACTATAAACACATTCTCCTCCACATAGGAT-AAATGATATTGATGGTTTTCTTTT
* * * *
89064 GCATGGAAATCTTTTCCTTGCCT-AATTTCCTT-AAATCAAAGTTTGTACTTTAAATGAGACCTG
193 GCATGGAAATCTTTTCTTTGCCTCATTTTCCTTAAAATCAAAGTTTATACTTTAAATGAGACATG
* *
89127 CATTGATTCTCGTAAAAGTCTCCATTCTTTCTAATA-TGGGAACCAATAACACATTCCCTATATT
258 CATTGATTCTCGTAAAAGTCTCCATTCTTTCTAAGATTGGGAACCAAAAACACATTCCCT-TATT
* * * **
89191 ATGATACATGACATTGATGCTTTGGCGTCACAAGAAAATATTTTCTTTCCACCGTTATTGATAGA
322 ACGATACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCA-CGTTATTGATAGA
* * * * * *
89256 ATCAAAGTTTGTCTCCTAAATAAGACAAAAATGAATACTCACACTACTCCACATTCTTTTCTATA
386 ATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATTATTTTCTAGA
89321 TTAGGCACCATAAACATAGTCTTCT
451 TTAGGCACCATAAACATAGTCTTCT
* * * * *
89346 AATAGGGATACATG--ATTGATGCTATGGTTTCGCAAGAAACGCTTTCTTT-CAACCAATTTTTG
1 AATACGGATACATGATATTGATGCTTTGGTTTCACTAGAAACGCTTT-TTTCCCA-CAATTTTTG
* *
89408 TAAACTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTT
64 TAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTC
* * *
89473 GTGATTGGGCACTCTAAACACATTCTCC-CCA-ATAGGATAAATGATATTGATGGTTTTCTTTTG
129 ATGATTAGGCACTATAAACACATTCTCCTCCACATAGGATAAATGATATTGATGGTTTTCTTTTG
* * * *
89536 CCTGGAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGA-ACTCTAAATGAGACAAG
194 CATGGAAATCTTTTCTTTGCCTCATTTTCCTTAAAATCAAAGTTT-ATACTTTAAATGAGACATG
* * * * *
89600 CAATCATTCTCGTAAAAGTCTCTATTCGTTCCAAGATTGGGAACCAAAAACACATT-CC------
258 CATTGATTCTCGTAAAAGTCTCCATTCTTTCTAAGATTGGGAACCAAAAACACATTCCCTTATTA
*
89658 C--T---TGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTATTGATA-AA
323 CGATACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCC-ACGTTATTGATAGAA
* * * * *
89717 GCCAAAGTTTGTCTCTTAAATAAGGCAAACTTGAATACTCATAGTAATCCCCATTATTTTC-AGG
387 -TCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATTATTTTCTA-G
* * *
89781 ATTTGGCATCATAAACAGAGTCTTCT
450 ATTAGGCACCATAAACATAGTCTTCT
* * * *
89807 TATACGGATACAGGATATTGATGATTTGGTTTCACTAGAGACGCTTTTTTCCCACAATTTTTGTA
1 AATACGGATACATGATATTGATGCTTTGGTTTCACTAGAAACGCTTTTTTCCCACAATTTTTGTA
* * * ** *
89872 GATTCTATGTTTGTGCCTCAAATGAGGTAAACATGGATTCTAGTAAGGATCATCATTCATTTCAT
66 AATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCAT
**
89937 GATTAGGCACTAT-AA-ACATTCTCCTCCACA-A-GATGCATGATATTGATGGTTTTCTTTTGCA
131 GATTAGGCACTATAAACACATTCTCCTCCACATAGGATAAATGATATTGATGGTTTTCTTTTGCA
* * *
89998 TGGACATCTTTTCTTTGCCTAATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCAT
196 TGGAAATCTTTTCTTTGCCTCATTTTCCTTAAAATCAAAGTTTATACTTTAAATGAGACATGCAT
* * *
90063 TGATTCTCGTAAAAGTCTCCATTCTTTCTAATATTGGGAACCAATAACACATTCCCTATATTATG
261 TGATTCTCGTAAAAGTCTCCATTCTTTCTAAGATTGGGAACCAAAAACACATTCCCT-TATTACG
*
90128 ATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTATTGATAGAATC
325 ATACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCA-CGTTATTGATAGAATC
* * *
90193 AAAGTTTGTCTCCT-AATAAGACAAA-ATGAATACTCATACTAATCCACATTCTTTTCTATATTA
389 AAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATTATTTTCTAGATTA
90256 GGCACCATAAACATAGTCTTCT
454 GGCACCATAAACATAGTCTTCT
* * * * *
90278 AATAGGGATACATGATATTGATGCTATGGTTTCGCAAGAAACGCTTTCTTT-CAACCAATTTTTG
1 AATACGGATACATGATATTGATGCTTTGGTTTCACTAGAAACGCTTT-TTTCCCA-CAATTTTTG
* *
90342 TAAACTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTGC
64 TAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTC
* *
90407 GTGATTAGGCACTCTAAACACATTCTCC-CCA-ATAGGATAAATGATATTGATGGTTTTCTTTTG
129 ATGATTAGGCACTATAAACACATTCTCCTCCACATAGGATAAATGATATTGATGGTTTTCTTTTG
* * * *
90470 CCTGGAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGA-ACTCTAAATGAGACAAG
194 CATGGAAATCTTTTCTTTGCCTCATTTTCCTTAAAATCAAAGTTT-ATACTTTAAATGAGACATG
* * * *
90534 CAATCT-TTTCTCGTAAAAGTCTCTATTCGTTCCAAGATTGGGAACCAAAAACACATT-CC----
258 C-AT-TGATTCTCGTAAAAGTCTCCATTCTTTCTAAGATTGGGAACCAAAAACACATTCCCTTAT
*
90593 --C--T---TGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTATTGATA-
321 TACGATACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCC-ACGTTATTGATAG
* * * * *
90650 AAGCCAAAGTTTGTCTCTTAAATAAGGCAAACCTGAATACTCATAGTAATCCCCATTATTTTC-A
385 AA-TCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATTATTTTCTA
* * *
90714 GGATTCGGCATCATAAACAGAGTCTTCT
449 -GATTAGGCACCATAAACATAGTCTTCT
* * * * *
90742 TATACGGATATAGGATATTGATGATTTGGTTTCACTAGAGACGCTTTTTTCCCACAATTTTTGTA
1 AATACGGATACATGATATTGATGCTTTGGTTTCACTAGAAACGCTTTTTTCCCACAATTTTTGTA
* * * * *
90807 GATTCTATGTTTGTGCCTCAAATGAGATAAACATGGATTCTAGTAAGGATCATCATTCATTTCAT
66 AATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCAT
**
90872 GATTAGGCACTATAAACACA-TCTCCTCCACA-A-GATGCATGATATTGATGGTTTTCTTTTGCA
131 GATTAGGCACTATAAACACATTCTCCTCCACATAGGATAAATGATATTGATGGTTTTCTTTTGCA
*
90934 TGGAAATCTTTTCTTTGCCTCATTTTCCTTAAAATCAACGTTTATACTTTAAATGAGACATGCAT
196 TGGAAATCTTTTCTTTGCCTCATTTTCCTTAAAATCAAAGTTTATACTTTAAATGAGACATGCAT
*
90999 TGATTCTCGTAAAAGTCTCCATTCTTTCTAATA-TGGGAACCAAAAACACATTCCCTATATTACG
261 TGATTCTCGTAAAAGTCTCCATTCTTTCTAAGATTGGGAACCAAAAACACATTCCCT-TATTACG
** *
91063 ATACATGACATTGATGCTTTGGCATCATAAGAGAAGCTTTTCTTTCCACTGTTATTGATAGAATC
325 ATACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCAC-GTTATTGATAGAATC
* * *
91128 AAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCACATTCTTTTCTAGAGTA
389 AAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATTATTTTCTAGATTA
*
91193 GGCACCATAAACATAGTCTTCA
454 GGCACCATAAACATAGTCTTCT
* *
91215 AATA-GCGATACATGATATTGATG-TTATGTTTTCGA--AGAAAACGCTTTCTTCCCACCAA-TT
1 AATACG-GATACATGATATTGATGCTT-TGGTTTC-ACTAG-AAACGCTTTTTTCCCA-CAATTT
* *
91275 TTGTAAATTCTATGTTCGTGCCTCAAATGAGACAAACATGGATTCTAG-GAGGATCTTCATTCAT
61 TTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCAT
* * * * * *
91339 TTCGTGATTAGGCACTATAAAAAGA-T-T-CTCCACATTAGGATAAATGATACTGATGCCTTTTT
126 TTCATGATTAGGCACTATAAACACATTCTCCTCCACA-TAGGATAAATGATATTGATG-GTTTTC
* * * *
91401 TTTTGCATGAAAATCTTTTTTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGA
189 TTTTGCATGGAAATCTTTTCTTTGCCTCATTTTCCTTAAAATCAAAGTTTATACTTTAAATGAGA
* * *
91466 CATGTATTGATTCTCATAAAAGTCTCCATTCTTT-TCAAGATTGGGAACCAAAAACACATTCCTT
254 CATGCATTGATTCTCGTAAAAGTCTCCATTCTTTCT-AAGATTGGGAACCAAAAACACATTCCCT
* *
91530 TCATTAGGATACATGACATTGATACTTT
318 T-ATTACGATACATGACATTGATGCTTT
91558 AGGGTTTGCA
Statistics
Matches: 2684, Mismatches: 349, Indels: 237
0.82 0.11 0.07
Matches are distributed among these distances:
460 163 0.06
461 173 0.06
462 237 0.09
463 134 0.05
464 92 0.03
465 1 0.00
466 2 0.00
467 57 0.02
468 38 0.01
469 118 0.04
470 179 0.07
471 378 0.14
472 350 0.13
473 409 0.15
474 235 0.09
475 117 0.04
476 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (475 bp):
AATACGGATACATGATATTGATGCTTTGGTTTCACTAGAAACGCTTTTTTCCCACAATTTTTGTA
AATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCAT
GATTAGGCACTATAAACACATTCTCCTCCACATAGGATAAATGATATTGATGGTTTTCTTTTGCA
TGGAAATCTTTTCTTTGCCTCATTTTCCTTAAAATCAAAGTTTATACTTTAAATGAGACATGCAT
TGATTCTCGTAAAAGTCTCCATTCTTTCTAAGATTGGGAACCAAAAACACATTCCCTTATTACGA
TACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCACGTTATTGATAGAATCAA
AGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATTATTTTCTAGATTAGG
CACCATAAACATAGTCTTCT
Done.