genome.fa.s2139.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2139
Parameters: 2 7 7 80 10 50 1000
Length:  24508

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
591--675	1	85.0	1	77	0	80	88	10	1	0	0.58
594--675	10	7.8	10	82	15	103	87	10	1	0	0.59
593--675	11	7.7	11	86	5	116	87	10	1	0	0.59
589--675	38	2.3	38	86	7	131	87	11	1	0	0.60
2055--2589	30	17.6	29	72	12	260	28	28	15	27	1.96
2049--2167	27	4.1	28	77	13	107	31	29	15	24	1.95
2261--2443	88	2.1	88	86	3	251	28	27	16	26	1.97
2272--2412	27	5.0	27	78	10	129	32	28	17	21	1.96
2051--2589	245	2.2	244	91	3	895	28	28	15	27	1.96
2451--2525	35	2.2	35	87	2	116	22	29	9	38	1.85
2516--2639	28	4.3	29	83	11	132	37	29	15	16	1.90
2659--2888	48	4.8	48	79	8	245	26	23	17	31	1.97
2756--2840	43	2.0	43	88	0	125	28	23	18	29	1.98
2659--2897	92	2.5	95	82	6	286	26	24	16	32	1.96
2798--2944	52	2.7	54	81	3	181	25	23	16	34	1.95
3768--3792	13	1.9	13	100	0	50	36	16	16	32	1.90
3748--3814	33	2.0	33	88	0	98	34	11	13	40	1.81
4688--4713	13	2.0	13	100	0	52	30	15	15	38	1.88
7046--7092	21	2.3	21	76	23	55	42	4	19	34	1.70
7213--7251	13	3.0	13	96	0	69	35	15	17	30	1.91
7237--7313	20	3.6	20	77	16	73	44	14	15	25	1.84
9312--9342	15	2.1	15	93	0	53	12	22	16	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11146--11190	22	2.1	21	84	8	56	22	17	4	55	1.60
13408--13433	13	2.0	13	100	0	52	30	15	15	38	1.88
13798--13933	52	2.6	52	96	0	245	36	18	16	28	1.92
18899--19616	32	23.1	32	86	3	816	20	17	30	31	1.96
19674--20503	27	30.2	27	89	3	1194	28	13	34	23	1.93
19674--20503	82	10.1	81	89	2	1194	28	13	34	23	1.93
21997--22049	18	2.8	20	91	5	83	37	11	13	37	1.80
22064--22120	21	2.8	21	91	2	89	45	12	17	24	1.83
22152--22214	19	3.7	18	76	24	73	36	17	12	33	1.88
22145--22216	32	2.2	32	97	0	135	36	16	12	34	1.87
22171--22195	13	1.9	13	100	0	50	32	16	16	36	1.90
23070--23116	16	3.1	16	79	17	55	70	10	14	4	1.31
23058--23139	37	2.2	37	77	12	89	70	10	13	4	1.30
24426--24502	28	2.7	28	91	2	127	24	33	14	27	1.94

Tables:   1

The End!