Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2148
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91359
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:2332 original size:129 final size:130
Alignment explanation
Indices: 2101--2372 Score: 492
Period size: 129 Copynumber: 2.1 Consensus size: 130
2091 GCGCCATCCT
*
2101 TCATCTCTAATCTATTCCATTTTGTTATTTTTTTCTACTTCTTTCAATTTCTGTTCTTGCATCAA
1 TCATCACTAATCTATTCCATTTTGTTATTTTTTTCTACTTCTTTCAATTTCTGTTCTTGCATCAA
*
2166 TAATTCTGTTTATTGTTAGAAATCCATCTCAAGATCATTATTTAGGCAACCTTGGTTCATGGTTG
66 TAATTCTGTTTAATGTTAGAAATCCATCTCAAGATCATTATTTAGGCAACCTTGGTTCATGGTTG
* * *
2231 TCATCACTAATCTATTCCATTTTGTTA-TTTTTTCTGCTTCTTTCCATTTCTGTTCTTGCATTAA
1 TCATCACTAATCTATTCCATTTTGTTATTTTTTTCTACTTCTTTCAATTTCTGTTCTTGCATCAA
2295 TAATTCTGTTTAATGTTAGAAATCCATCTCAAGATCATTATTTAGGCAACCTTGGTTCATGGTTG
66 TAATTCTGTTTAATGTTAGAAATCCATCTCAAGATCATTATTTAGGCAACCTTGGTTCATGGTTG
2360 TCATCACTAATCT
1 TCATCACTAATCT
2373 TGAAACGAAT
Statistics
Matches: 137, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
129 111 0.81
130 26 0.19
ACGTcount: A:0.23, C:0.19, G:0.11, T:0.47
Consensus pattern (130 bp):
TCATCACTAATCTATTCCATTTTGTTATTTTTTTCTACTTCTTTCAATTTCTGTTCTTGCATCAA
TAATTCTGTTTAATGTTAGAAATCCATCTCAAGATCATTATTTAGGCAACCTTGGTTCATGGTTG
Found at i:3714 original size:324 final size:324
Alignment explanation
Indices: 3312--3964 Score: 864
Period size: 324 Copynumber: 2.0 Consensus size: 324
3302 TAAGAGACAA
* *
3312 ACTTTGATTCTATAAAAAATGGTGGAAAGAAAACCTTTTCTTGCAACACCAAAACATCAATGTCA
1 ACTTTGATTCTATAAAAAATAGTGGAAAGAAAACCGTTTCTTGCAACACCAAAACATCAATGTCA
* * * *
3377 TGTGTCATAATGAACGG-AATGTGTTTTCGGTTCCCCATATTGAAAAGAATGGAGACTATTATGA
66 CGTATCATAATGAA-GGCAATATGTTTTCGGTTCCCCATATTGAAAAGAATGGAGACT-CTATG-
* **
3441 G-AATCAATGCTTGCCTTATTTAAGGGATAAACTTTCAT-TTTAAGGAAAATGGGGAAAAGAAAA
128 GCAATCAATGCTTGCCTTATATAAGGGATAAACTTTCATGTTTAAGGAAAATAAGGAAAAGAAAA
* *
3504 GA-TATCTAAGCAAAAGAAAATCATCATTATCATTTATCCTAAAGAGGAGAATGTGCTTATAGTG
193 GAGT-TCTAAGCAAAAGAAAATCAACAGTATCATTTATCCTAAAGAGGAGAATGTGCTTATAGTG
* * * *
3568 CCTAATCGCAAAATGAATGAAGATCATTACTAGAATCAATGTTTATCTCATTTGAGGCACGAACT
257 CCTAATCCCAAAATGAATGAAGATCATTACCAGAATCAATGTTTATCTCATTTGAGGAACAAACT
3633 TAG
322 TAG
* * *
3636 ACTTTGATTTTATAAAAAATAGTGGAAAGAAAATCGTTTCTTGCAACACCAAAGCATCAATGTCA
1 ACTTTGATTCTATAAAAAATAGTGGAAAGAAAACCGTTTCTTGCAACACCAAAACATCAATGTCA
* * * ** *
3701 CGTATCCTAATGAAGGCACTATGTTTTTGGTTCCCTTTATTGAAAAGAATGGTGACTCTATGGCA
66 CGTATCATAATGAAGGCAATATGTTTTCGGTTCCCCATATTGAAAAGAATGGAGACTCTATGGCA
* * * **
3766 ATCAATGCTTGCCTTATATAAGGGATGAACTTTGATGTTTTAGGAAAATAAGGCCAAGAAAAGAG
131 ATCAATGCTTGCCTTATATAAGGGATAAACTTTCATGTTTAAGGAAAATAAGGAAAAGAAAAGAG
* * ** *
3831 TTTTATGCAAAAGAAAATCAACAGTATCATTTATCCTAATTAGGAGAATGTGTTTATAGTGCCTA
196 TTCTAAGCAAAAGAAAATCAACAGTATCATTTATCCTAAAGAGGAGAATGTGCTTATAGTGCCTA
* * * ** * * *
3896 ATCCCAGAATGATTGTAGATCATTACCAGAATCCTTGTTTTTCTTATTTGTGGAACAAACTTAG
261 ATCCCAAAATGAATGAAGATCATTACCAGAATCAATGTTTATCTCATTTGAGGAACAAACTTAG
3960 ACTTT
1 ACTTT
3965 ACAAAAATAG
Statistics
Matches: 283, Mismatches: 42, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
322 1 0.00
323 40 0.14
324 241 0.85
325 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (324 bp):
ACTTTGATTCTATAAAAAATAGTGGAAAGAAAACCGTTTCTTGCAACACCAAAACATCAATGTCA
CGTATCATAATGAAGGCAATATGTTTTCGGTTCCCCATATTGAAAAGAATGGAGACTCTATGGCA
ATCAATGCTTGCCTTATATAAGGGATAAACTTTCATGTTTAAGGAAAATAAGGAAAAGAAAAGAG
TTCTAAGCAAAAGAAAATCAACAGTATCATTTATCCTAAAGAGGAGAATGTGCTTATAGTGCCTA
ATCCCAAAATGAATGAAGATCATTACCAGAATCAATGTTTATCTCATTTGAGGAACAAACTTAG
Found at i:4378 original size:799 final size:800
Alignment explanation
Indices: 2836--4439 Score: 2245
Period size: 799 Copynumber: 2.0 Consensus size: 800
2826 CTTGAGACAA
* * * *
2836 ACTTTGATTCTATAAAAAAATTGAGGAAAGAAAACCTTTTCTTGCATCACCAAAGCGTCAATGTC
1 ACTTTGATTCTATAAAAAAATAGAGGAAAGAAAACCGTTTCTTGCAACACCAAAGCATCAATGTC
** *
2901 ATTTATCCTATTGAAGGAAAAGTATTTTTGGTTCCCAAGATTAAAAAGAATGGAGACTGATATGA
66 ACGTATCCTAATGAAGGAAAAGTATTTTTGGTTCCCAAGATTAAAAAGAATGGAGACTGATATGA
* * *
2966 GAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAATAGGGCAAAGAATAGAT
131 GAATCAATGCTTGCCTTATATAAGGAATGAACTTTGATTTTAAGGAAATAAGGCAAAGAAAAGAT
*
3031 TTCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
196 TTCCAAGCAAAAGAAAATCAACAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
** * * * *
3096 ATTGCAAAATGAATGAAGATCGTTACTAGAATCAATGTTTATCTCATTTGAGGCACGAACTTAGA
261 ATCCCAAAATGAATGAAGATCATTACCAGAATCAATGTTTATCTCATTTGAGGAACAAACTTAGA
* * *
3161 CTTTACAAAAATTGGGGGAAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCAAGTATCTT
326 CTTTACAAAAATAGGGGGAAAGAAAGCCTTTCTTACAAAACCAAAGCATCAATATCAAGTATCCT
3226 TACGAGAAGACGAAACTTATGATGCCTAATCTTGAAACGAATGGGGATTAGTATGGGCATTCATG
391 TACGAGAAGACGAAACTTATGATGCCTAATCTTGAAACGAATGGGGATTAGTATGGGCATTCATG
* * *
3291 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAACCTTTTCTTGC
456 TTTGTCTTATTTAAAAGAAAAACTTTGATTCTATAAAAAATGATGGAAAGAAAACCTTTTCTTGC
** * * *
3356 AACACCAAAACATCAATGTCATGTGTCATAATGAACGGAATGTGTTTTCGGTTCCCCATATTGAA
521 AACACCAAAACATCAATGTCATGTACCATAATGAACGGAATGTATTTTCGGCTCCCAATATTGAA
**
3421 AAGAATGGAGACTATTATGAGAATCAATGCTTGCCTTATTTAAGGGATAAACTTTCATTTTAAGG
586 AAGAATGGAGACTATTATGAGAATCAATGCTTGCCTTATTTAAGGGATAAACAATCATTTTAAGG
* * * *
3486 AAAATGGGGAAAAGAAAAGATATCTAAGCAAAAGAAAATCATCATTATCATTTATCCTAAAGAGG
651 AAAATAGGGAAAAGAAAAGATATCCAAGAAAAAGAAAATCATCAATATCATTTATCCTAAAGAGG
*
3551 AGAATGTGCTTATAGTGCCTAATCGCAAAATGAATGAAGATCATTACTAGAATCAATGTTTATCT
716 AGAATGTGCTTATAGTGCCTAATCGCAAAATGAATGAAGATCATTACTAGAATCAATGTTCATCT
3616 CAT-TTGAGGCACGAACTTAG
781 C-TGTTGAGGCACGAACTTAG
* * *
3636 ACTTTGATTTTAT-AAAAAATAGTGGAAAGAAAATCGTTTCTTGCAACACCAAAGCATCAATGTC
1 ACTTTGATTCTATAAAAAAATAGAGGAAAGAAAACCGTTTCTTGCAACACCAAAGCATCAATGTC
** * *** * * *
3700 ACGTATCCTAATGAAGGCACTA-TGTTTTTGGTTCCCTTTATTGAAAAGAATGGTGACT-CTATG
66 ACGTATCCTAATGAAGG-AAAAGTATTTTTGGTTCCCAAGATTAAAAAGAATGGAGACTGATATG
* * *
3763 -GCAATCAATGCTTGCCTTATATAAGGGATGAACTTTGATGTTTTAGGAAAATAAGGCCAAGAAA
130 AG-AATCAATGCTTGCCTTATATAAGGAATGAACTTTGAT-TTTAAGG-AAATAAGGCAAAGAAA
* * * *
3827 AGAGTTT-TATGCAAAAGAAAATCAACAGTATCATTTATCCTAATTAGGAGAATGTGTTTATAGT
192 AGA-TTTCCAAGCAAAAGAAAATCAACAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* * * ** * * *
3891 GCCTAATCCCAGAATGATTGTAGATCATTACCAGAATCCTTGTTTTTCTTATTTGTGGAACAAAC
256 GCCTAATCCCAAAATGAATGAAGATCATTACCAGAATCAATGTTTATCTCATTTGAGGAACAAAC
* * * * ** **
3956 TTAGACTTTACAAAAATAGGTGGG-AAGAAAGCTTTTGTTACGAAACCGAAGTGTCAATATCGTG
321 TTAGACTTTACAAAAATAGG-GGGAAAGAAAGCCTTTCTTACAAAACCAAAGCATCAATATCAAG
* **
4020 TATCCTTACGAGAAGACTATGCTTATGATGCCTAATCTTGAAACGAATGGGGATTAGTATGGGCA
385 TATCCTTACGAGAAGACGAAACTTATGATGCCTAATCTTGAAACGAATGGGGATTAGTATGGGCA
* * *
4085 TT-ATGTTTGTTTTATTTAAAAGAAAAACTTTGATTCTATAAAAAATTATGGAAAGAAAACTTTT
450 TTCATGTTTGTCTTATTTAAAAGAAAAACTTTGATTCTATAAAAAATGATGGAAAGAAAACCTTT
* ** * * *
4149 TCTTGCAATACCAAGGCATCAATGTCATTTACCATAATGAAGGGAATGTATTTTTGGCTCCCAAT
515 TCTTGCAACACCAAAACATCAATGTCATGTACCATAATGAACGGAATGTATTTTCGGCTCCCAAT
* * * * *
4214 GTTGAAAAGAATGGAGTCTGTTATGAGAATCAATGCTTGCCTTATTTAAGGGATGAACAATGATT
580 ATTGAAAAGAATGGAGACTATTATGAGAATCAATGCTTGCCTTATTTAAGGGATAAACAATCATT
* *
4279 TTAAGGAAAATAGGGTAAAGAAAAGAT-TACCATGAAAAAGAAAATCATCAATATCATTTATCCT
645 TTAAGGAAAATAGGGAAAAGAAAAGATAT-CCAAGAAAAAGAAAATCATCAATATCATTTATCCT
* * *
4343 AATGAGGAGAATGTGTTTATAGTGCCTACTCGCAAAATGAATGAAGATCATTACTAGAATCAATG
709 AAAGAGGAGAATGTGCTTATAGTGCCTAATCGCAAAATGAATGAAGATCATTACTAGAATCAATG
4408 TTCATCTCTGTTGAGGCACGAACTTAG
774 TTCATCTCTGTTGAGGCACGAACTTAG
4435 ACTTT
1 ACTTT
4440 ACAAAAATTG
Statistics
Matches: 704, Mismatches: 92, Indels: 17
0.87 0.11 0.02
Matches are distributed among these distances:
797 1 0.00
798 41 0.06
799 410 0.58
800 246 0.35
801 6 0.01
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (800 bp):
ACTTTGATTCTATAAAAAAATAGAGGAAAGAAAACCGTTTCTTGCAACACCAAAGCATCAATGTC
ACGTATCCTAATGAAGGAAAAGTATTTTTGGTTCCCAAGATTAAAAAGAATGGAGACTGATATGA
GAATCAATGCTTGCCTTATATAAGGAATGAACTTTGATTTTAAGGAAATAAGGCAAAGAAAAGAT
TTCCAAGCAAAAGAAAATCAACAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
ATCCCAAAATGAATGAAGATCATTACCAGAATCAATGTTTATCTCATTTGAGGAACAAACTTAGA
CTTTACAAAAATAGGGGGAAAGAAAGCCTTTCTTACAAAACCAAAGCATCAATATCAAGTATCCT
TACGAGAAGACGAAACTTATGATGCCTAATCTTGAAACGAATGGGGATTAGTATGGGCATTCATG
TTTGTCTTATTTAAAAGAAAAACTTTGATTCTATAAAAAATGATGGAAAGAAAACCTTTTCTTGC
AACACCAAAACATCAATGTCATGTACCATAATGAACGGAATGTATTTTCGGCTCCCAATATTGAA
AAGAATGGAGACTATTATGAGAATCAATGCTTGCCTTATTTAAGGGATAAACAATCATTTTAAGG
AAAATAGGGAAAAGAAAAGATATCCAAGAAAAAGAAAATCATCAATATCATTTATCCTAAAGAGG
AGAATGTGCTTATAGTGCCTAATCGCAAAATGAATGAAGATCATTACTAGAATCAATGTTCATCT
CTGTTGAGGCACGAACTTAG
Found at i:4568 original size:475 final size:475
Alignment explanation
Indices: 3636--4617 Score: 1244
Period size: 475 Copynumber: 2.1 Consensus size: 475
3626 ACGAACTTAG
*
3636 ACTTTGATTTTATAAAAAA-TAGTGGAAAGAAAATCGTTTCTTGCAACACCAAAGCATCAATGTC
1 ACTTTGATTCTATAAAAAATTA-TGGAAAGAAAATCGTTTCTTGCAACACCAAAGCATCAATGTC
* * * ** *
3700 ACGTATCCTAATGAAGGCACTATGTTTTTGGTTCCCTTTATTGAAAAGAATGGTGACTCTATGGC
65 ACGTATCCTAATGAAGGCAATATATTTTTGGCTCCCAATATTGAAAAGAATGGAGACTCTATGGC
** * *
3765 AATCAATGCTTGCCTTATATAAGGGATGAACTTTGATGTTTTAGGAAAATAAGGCCAAGAAAAGA
130 AATCAATGCTTGCCTTATATAAGGGATGAACAATGATGTTTAAGGAAAATAAGGCAAAGAAAAGA
** * * *
3830 GTTTTATGCAAAAGAAAATCAACAGTATCATTTATCCTAATTAGGAGAATGTGTTTATAGTGCCT
195 GTTCCATGAAAAAGAAAATCAACAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * * ** ** * *
3895 AATCCCAGAATGATTGTAGATCATTACCAGAATCCTTGTTTTTCTTATTTGTGGAACAAACTTAG
260 AATCCCAAAATGAATGAAGATCATTACCAGAATCAATGTTCATCTTAGTTGAGGAACAAACTTAG
* * * **
3960 ACTTTACAAAAATAGGTGGGAAGAAAGCTTTTGTTACGAAACCGAAGTGTCAATATCGTGTATCC
325 ACTTTACAAAAATAGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCC
* ** *
4025 TTACGAGAAGACTATGCTTATGATGCCTAATCTTGAAACGAATGGGGATTAGTATGGGCATTATG
390 TTACGAGAAGACTATGCTTATGATGCCTAATCTTGAAACAAATCAGGATTAGTATAGGCATTATG
*
4090 TTTGTTTTATTTAAAAGAAAA
455 TTTGTTTTACTTAAAAGAAAA
* * *
4111 ACTTTGATTCTATAAAAAATTATGGAAAGAAAA-CTTTTTCTTGCAATACCAAGGCATCAATGTC
1 ACTTTGATTCTATAAAAAATTATGGAAAGAAAATC-GTTTCTTGCAACACCAAAGCATCAATGTC
** * * * * *
4175 ATTTA-CCATAATGAAGGGAATGTATTTTTGGCTCCCAATGTTGAAAAGAATGGAGTCTGTTATG
65 ACGTATCC-TAATGAAGGCAATATATTTTTGGCTCCCAATATTGAAAAGAATGGAGACT-CTATG
* * *
4239 AG-AATCAATGCTTGCCTTATTTAAGGGATGAACAATGAT-TTTAAGGAAAATAGGGTAAAGAAA
128 -GCAATCAATGCTTGCCTTATATAAGGGATGAACAATGATGTTTAAGGAAAATAAGGCAAAGAAA
*
4302 AGA-TTACCATGAAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
192 AGAGTT-CCATGAAAAAGAAAATCAACAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* * * * *
4366 GCCTACTCGCAAAATGAATGAAGATCATTACTAGAATCAATGTTCATCTCT-GTTGAGGCACGAA
256 GCCTAATCCCAAAATGAATGAAGATCATTACCAGAATCAATGTTCATCT-TAGTTGAGGAACAAA
* * *
4430 CTTAGACTTTACAAAAATTGCG-GGG-AGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCTT
320 CTTAGACTTTACAAAAATAG-GTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGT
* * *
4493 GTATCCTTGCGAGAAGACTATTCTTATGGTGCCTAATCTTGAAACAAATCAGGATTAGTATAGGC
384 GTATCCTTACGAGAAGACTATGCTTATGATGCCTAATCTTGAAACAAATCAGGATTAGTATAGGC
* *
4558 ATTCATGTTTGTTTTACTTAAGAGACAA
449 ATT-ATGTTTGTTTTACTTAAAAGAAAA
* *
4586 ACTTTGATTCTATAAAAAATTGTGAAAAGAAA
1 ACTTTGATTCTATAAAAAATTATGGAAAGAAA
4618 GCCTTGATTT
Statistics
Matches: 434, Mismatches: 64, Indels: 18
0.84 0.12 0.03
Matches are distributed among these distances:
474 97 0.22
475 294 0.68
476 42 0.10
477 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (475 bp):
ACTTTGATTCTATAAAAAATTATGGAAAGAAAATCGTTTCTTGCAACACCAAAGCATCAATGTCA
CGTATCCTAATGAAGGCAATATATTTTTGGCTCCCAATATTGAAAAGAATGGAGACTCTATGGCA
ATCAATGCTTGCCTTATATAAGGGATGAACAATGATGTTTAAGGAAAATAAGGCAAAGAAAAGAG
TTCCATGAAAAAGAAAATCAACAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
ATCCCAAAATGAATGAAGATCATTACCAGAATCAATGTTCATCTTAGTTGAGGAACAAACTTAGA
CTTTACAAAAATAGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCT
TACGAGAAGACTATGCTTATGATGCCTAATCTTGAAACAAATCAGGATTAGTATAGGCATTATGT
TTGTTTTACTTAAAAGAAAA
Found at i:4732 original size:126 final size:126
Alignment explanation
Indices: 4506--4735 Score: 370
Period size: 126 Copynumber: 1.8 Consensus size: 126
4496 TCCTTGCGAG
* * * *
4506 AAGACTATTCTTATGGTGCCTAATCTTGAAACAAATCAGGATTAGTATAGGCATTCATGTTTGTT
1 AAGACCATGCTTATAGTGCCTAATCTTGAAACAAATCAGGATTAGTATAGGCATTCATGTTTGTC
4571 TTACTTAAGAGACAAACTTTGATTCTATAAAAAATTGTGAAAAGAAAGCCTTGATTTCTAT
66 TTACTTAAGAGACAAACTTTGATTCTATAAAAAATTGTGAAAAGAAAGCCTTGATTTCTAT
** * *
4632 AAGACCATGCTTATAGTGCCTAATCTTGAAACAAATGGGGATTTGTATGGGCATTCATGTTTGTC
1 AAGACCATGCTTATAGTGCCTAATCTTGAAACAAATCAGGATTAGTATAGGCATTCATGTTTGTC
* *
4697 TTATTTAAGAGACAAACTTTGATTCTATAAGAAATTGTG
66 TTACTTAAGAGACAAACTTTGATTCTATAAAAAATTGTG
4736 GAAATAAAAC
Statistics
Matches: 94, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
126 94 1.00
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.36
Consensus pattern (126 bp):
AAGACCATGCTTATAGTGCCTAATCTTGAAACAAATCAGGATTAGTATAGGCATTCATGTTTGTC
TTACTTAAGAGACAAACTTTGATTCTATAAAAAATTGTGAAAAGAAAGCCTTGATTTCTAT
Found at i:5349 original size:601 final size:594
Alignment explanation
Indices: 4097--5222 Score: 1452
Period size: 601 Copynumber: 1.9 Consensus size: 594
4087 ATGTTTGTTT
* * * * * * * *
4097 TATTTAAAAGAAAAACTTTGATTCTATAAAAAATTATGGAAAGAAAACTTTTTCTTGCAATACCA
1 TATTGAAAAGACAAACTTTGAATCAATAAGAAATTGTGGAAATAAAACTTTTTCTTGCAACACCA
* **
4162 AGGCATCAATGTCATTTACCATAATGAAGGGAATGTATTTTTGGCTCCCAATGTTGAAAAGAATG
66 AAGCATCAATGTCATTTACCATAATGAAGCAAATGTATTTTTGGCTCCCAATGTTGAAAAGAATG
* * *
4227 GAGTCTGTTATGAGAATCAATGCTTGCCTTATTTAAGGGATGAACAATGATTTTAAGGAAAATAG
131 GAGTCTGTTATGAGAATCAAAGCTTGCCTTATTTAAGGGATGAACAATGATTTTAAGAAAAACAG
*
4292 GGTAAAGAAAAGATTACCATGAAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
196 GGCAAAGAAAAGATTACCATGAAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* * *
4357 GTTTATAGTGCCTACTCGCAAAATGAATGAAGATCATTACTAGAATCAATGTTCATCTCTGTTGA
261 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCAACGTTCATCTCTGTTGA
* * * * *
4422 GGCACGAACTTAGACTTTACAAAAATTGCGGGGAGAAAGCCTTTCTTGCGAAACCAAAGCATCAA
326 GACAAGAACTTAGACTTTACAAAAATTGCGGGAAGAAAGCCTTTCCTGCGAAACCAAAGCACCAA
* * * *
4487 TATCTTGTATCCTTGCGAGAAGACTATTCTTATGGTGCCTAATCTTGAAACAAATCAGGATTAGT
391 TATCGTGTATCCGTACGAGAAGACTATGCTTATGGTGCCTAATCTTGAAACAAATCAGGATTAGT
* * *
4552 ATAGGCATTCATGTTTGTTTTACTTAAGAGACAAACTTTGATTCTATAAAAAATTGTGAAAAGAA
456 ATAGGCATTCATGCTTGTGTTACTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGAAAAGAA
* * ** * * * * * *
4617 AGCCTTGATTTCTATAAGACCATGCTTATAGTGCCTAATCTTGAAACAAATGGGGATTTGTATGG
521 AACCTT-ATTTCTATAACACCAAAC-TATAATGCCTAATCGTCAAACAAATCGGAATGTGTAT--
** *
4682 GCATTCATGTTTGTCT
582 G--TT-ATGTTTCCCA
* * * * *
4698 TATTTAAGAGACAAACTTTGATTCTATAAGAAATTGTGGAAATAAAACTTTTTCTTGCAACACTA
1 TATTGAAAAGACAAACTTTGAATCAATAAGAAATTGTGGAAATAAAACTTTTTCTTGCAACACCA
* *
4763 AAGCATCAGTGTCATTTATCC-TAATGAATCAAATGTATTTTTGGCTCCCAATGTTGAAAAGAAT
66 AAGCATCAATGTCATTTA-CCATAATGAAGCAAATGTATTTTTGGCTCCCAATGTTGAAAAGAAT
** *
4827 GGAGTCTGTTATGAGAATCAAAGCTTGCCTTATTTAAGGGATGAACTTTGATTTTATGAAAAACA
130 GGAGTCTGTTATGAGAATCAAAGCTTGCCTTATTTAAGGGATGAACAATGATTTTAAGAAAAACA
* * * * * *
4892 GGGCAAATAAAAGATTTCCTTGCAAAATAAAATCATCAATATCTTTTATCCTAATGAGGAGAATG
195 GGGCAAAGAAAAGATTACCATGAAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* * * * **
4957 TGTTTATGGTGACC-AATCATAAAATGAATGAAGATCATTCCTAGAATCCACGTTTGTCTCAT-T
260 TGTTTATAGTG-CCTAATCACAAAATGAATGAAGATCATTACTAGAATCAACGTTCATCTC-TGT
*
5020 TGAGACAAGAATTTAGACTTTACAAAAATTAG-GGGAAGAAAGCCTTTCCTGCGAAACC-AAGCA
323 TGAGACAAGAACTTAGACTTTACAAAAATT-GCGGGAAGAAAGCCTTTCCTGCGAAACCAAAGCA
** **
5083 CCAATATCGTGTATCCGTACGAGAAGACTATGCTTATGGTGCCTAATCTTGAAATGAATGGGGAT
387 CCAATATCGTGTATCCGTACGAGAAGACTATGCTTATGGTGCCTAATCTTGAAACAAATCAGGAT
* * * *
5148 TAGTATGGGCATTCATGCTTGTGTTATTTAAGAGATAAACTTTGATTCTATAAAAAATGGTGGAA
452 TAGTATAGGCATTCATGCTTGTGTTACTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGAAA
5213 AGAAAACCTT
517 AGAAAACCTT
5223 TTCTTGCAAC
Statistics
Matches: 465, Mismatches: 56, Indels: 9
0.88 0.11 0.02
Matches are distributed among these distances:
600 128 0.28
601 331 0.71
602 6 0.01
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (594 bp):
TATTGAAAAGACAAACTTTGAATCAATAAGAAATTGTGGAAATAAAACTTTTTCTTGCAACACCA
AAGCATCAATGTCATTTACCATAATGAAGCAAATGTATTTTTGGCTCCCAATGTTGAAAAGAATG
GAGTCTGTTATGAGAATCAAAGCTTGCCTTATTTAAGGGATGAACAATGATTTTAAGAAAAACAG
GGCAAAGAAAAGATTACCATGAAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCAACGTTCATCTCTGTTGA
GACAAGAACTTAGACTTTACAAAAATTGCGGGAAGAAAGCCTTTCCTGCGAAACCAAAGCACCAA
TATCGTGTATCCGTACGAGAAGACTATGCTTATGGTGCCTAATCTTGAAACAAATCAGGATTAGT
ATAGGCATTCATGCTTGTGTTACTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGAAAAGAA
AACCTTATTTCTATAACACCAAACTATAATGCCTAATCGTCAAACAAATCGGAATGTGTATGTTA
TGTTTCCCA
Found at i:5778 original size:476 final size:473
Alignment explanation
Indices: 4632--6566 Score: 2362
Period size: 474 Copynumber: 4.1 Consensus size: 473
4622 TGATTTCTAT
* * * *
4632 AAGACCATGCTTATAGTGCCTAATCTTGAAACAAATGGGGATTTGTATGGGCATTCATGTTTGTC
1 AAGACTATGCTTATGGTGCCTAATCTTGAAACAAATGGGGATTAGTATGGGCATTCATGCTTGTC
* * *
4697 TTATTTAAGAGACAAACTTTGATTCTATAAGAAATTGTGGAAATAAAACTTTTTCTTGCAACACT
66 TTATTTAAGAGACAAACTTTGATTCTATAA-AAATTGTGGAAAGAAAACCTTTTCTTGCAACACC
* * ** *
4762 AAAGCATCAGTGTCATTTATCCTAATGAATCAAATGTATTTTTGGCTCCCAATGTTGAAAAGAAT
130 AAAGCATCAATGTCATGTATCCTAATGAAGGAAA-GTATTTTTGGCTCCCAATATTGAAAAGAAT
* * * * * *
4827 GGAGTCTGTTATGAGAATCAAAGCTTGCCTTATTTAAGGGATGAACTTTGATTTTATGAAAAACA
194 GGAGACTATTACGAGAATCAAAGCTTGCCTAATTTAAGGGATGAACTTTGATTTTAAGAAAAATA
* *
4892 GGGCAAATAAAAGATTTCCTTGCAAAATAAAATCATCAATATCTTTTATCCTAATGAGGAGAATG
259 GGGCAAAGAAAAGATTT-CTTGCAAAAGAAAATCATCAATATCTTTTATCCTAATGAGGAGAATG
* * * * *
4957 TGTTTATGGTGACC-AATCATAAAATGAATGAAGATCATTCCTAGAATCCACGTTTGTCTCATTT
323 TGTTTATAGTG-CCTAATCACAAAATGAATGAAGATCATTACTAGAATCAATGTTTGTCTCATTT
* * * *
5021 GAGACAAGAATTTAGACTTTACAAAAATT-AGGGGAAGAAAGCCTTTCCTGCGAAACC-AAGCAC
387 GAGACACGAACTTAGACTTTACAAAAATTGAGGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCAT
* *
5084 CAATATCGTGTATCCGTACGAG
452 CAATATCATGTATCCTTACGAG
** *
5106 AAGACTATGCTTATGGTGCCTAATCTTGAAATGAATGGGGATTAGTATGGGCATTCATGCTTGTG
1 AAGACTATGCTTATGGTGCCTAATCTTGAAACAAATGGGGATTAGTATGGGCATTCATGCTTGTC
* *
5171 TTATTTAAGAGATAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAACCTTTTCTTGCAACACC
66 TTATTTAAGAGACAAACTTTGATTCTAT-AAAAATTGTGGAAAGAAAACCTTTTCTTGCAACACC
* * * * * * * *
5236 AAAACATCAATGTCAAGTGTCATAAGGAACGGAATGTGTTTTTGGTTTCCC-ATATTGAAAAGAA
130 AAAGCATCAATGTCATGTATCCTAATGAA-GGAAAGTATTTTTGG-CTCCCAATATTGAAAAGAA
* * * * * *
5300 TGGAGACTATTATGAGAATCAATGCTTGCCTAATTTAAGGGATAAACTTTCATTGTAAGGAAAAT
193 TGGAGACTATTACGAGAATCAAAGCTTGCCTAATTTAAGGGATGAACTTTGATTTTAAGAAAAAT
* * *
5365 GGGGCAAAGAAAAGATTTCTAAGCAAAAGAAAATCATCAATATCTTTTATCCTAAAGAGGAGAAT
258 AGGGCAAAGAAAAGATTTCT-TGCAAAAGAAAATCATCAATATCTTTTATCCTAATGAGGAGAAT
* *
5430 GTGTTTATAGTGCCTAATCGCAAAATGAATGAAGATCATTACTAGAATCAATG-TTGATCTCTTT
322 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCAATGTTTG-TCTCATT
* * * *
5494 TGAGGCACGGACTTAGACTTTACAAAAATTGGGGGGAAGAAAGCCTTTATTGCGAAACCAAAGCA
386 TGAGACACGAACTTAGACTTTACAAAAATTGAGGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCA
* *
5559 TTAATATCATGTACCCTTACGAG
451 TCAATATCATGTATCCTTACGAG
* * *
5582 AAGACTATGCTTATGGTTCCTAATTTTGAAACAAATGGGGATTAGTATGGGCATTCATGTTTGTC
1 AAGACTATGCTTATGGTGCCTAATCTTGAAACAAATGGGGATTAGTATGGGCATTCATGCTTGTC
* *
5647 TTATTTAAGAGACAAACTTTGATTTTATAAAACATTGTGGAAAGAAAACCTTTTCTTGCAATACC
66 TTATTTAAGAGACAAACTTTGATTCTATAAAA-ATTGTGGAAAGAAAACCTTTTCTTGCAACACC
* * *
5712 AAAGCATCAATGTCATTTATGCTATTGAAGGAAAAGTATTTTTGGCTCCCAATATTGAAAAGAAT
130 AAAGCATCAATGTCATGTATCCTAATGAAGG-AAAGTATTTTTGGCTCCCAATATTGAAAAGAAT
* * *
5777 GGAGTCTATTACGAGAATCAAAGCTTGCCTAATTGAAGGGATGAACTTTGATTTTATGAAAAATA
194 GGAGACTATTACGAGAATCAAAGCTTGCCTAATTTAAGGGATGAACTTTGATTTTAAGAAAAATA
* * * * * *
5842 GGGCAAATAAAAGATTTTCATGCGAAAGAAATTCATCAATATCTTTTATCCGAGTGAGGAGAATG
259 GGGCAAAGAAAAGA-TTTCTTGCAAAAGAAAATCATCAATATCTTTTATCCTAATGAGGAGAATG
* * * * * * * **
5907 TGTTAACAGTGACTAATCATAAAATTAATGAAGATCTTTCCTAGAATTTATGTTTGTCTCATTTG
323 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTG
* * * * *
5972 AGACATGAATTTAGACTTCAC-AAAATCTGATGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGT
388 AGACACGAACTTAGACTTTACAAAAAT-TGAGGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCAT
* * *
6036 CAAAATCATGTATCCTAAAGAG
452 CAATATCATGTATCCTTACGAG
* * * * *
6058 TAGACTATGTTTATGGTGCCTAATCTTGAAACGAATGGGGATTAGTAT-GGTATTTATGCTTGTC
1 AAGACTATGCTTATGGTGCCTAATCTTGAAACAAATGGGGATTAGTATGGGCATTCATGCTTGTC
** * * ** * *
6122 TTATTTAAGAGACAAACTTTGATTCTGGCAAAAA-TGATTGAAAGAAAAGCATCAT-TTGCGACG
66 TTATTTAAGAGACAAACTTTGATTCT-ATAAAAATTG-TGGAAAGAAAA-CCTTTTCTTGCAACA
* * * * * * *
6185 CAAAAGCATCAATGTCATGTATCCTAATGAAGGGAATTTTTTTTGGTTCCCCATATTCAAAA-AA
128 CCAAAGCATCAATGTCATGTATCCTAATGAAGGAAAGTATTTTTGGCTCCCAATATTGAAAAGAA
* * * * ** * *
6249 GTGGTGACTGTTACG-GCAATCAATGCTTGCCTTATAAAAGGTATGAACTTTGATTTTAAGGAAA
193 -TGGAGACTATTACGAG-AATCAAAGCTTGCCTAATTTAAGGGATGAACTTTGATTTTAAGAAAA
* * * * *
6313 ATAAGGCAAAGTAAAGAGTTTCTTGCAAAAGAAAATCATCAGTATCATTTATCCTAATGTGGAGA
256 ATAGGGCAAAGAAAAGA-TTTCTTGCAAAAGAAAATCATCAATATCTTTTATCCTAATGAGGAGA
* * *
6378 ATGTGTTTATTGTGCCTAATCGCAAAATGAATGAAGATCATTACTAGAATCAATGTTTATCTCAT
320 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCAATGTTTGTCTCAT
** * * *
6443 TTGAGGTACGAACTTAGACTTTACAAAAATTGGGGGGAAGAAAGCTTTTTTTGCGAAACCAAAGC
385 TTGAGACACGAACTTAGACTTTACAAAAATTGAGGGGAAGAAAGCCTTTCTTGCGAAACCAAAGC
*
6508 ATCAATATCGTGTATCCTTACGAG
450 ATCAATATCATGTATCCTTACGAG
* * *
6532 AAAACTATGCTTATGGTGCCTGATCTTGAGACAAA
1 AAGACTATGCTTATGGTGCCTAATCTTGAAACAAA
6567 CTTTGATTCT
Statistics
Matches: 1236, Mismatches: 205, Indels: 40
0.83 0.14 0.03
Matches are distributed among these distances:
473 10 0.01
474 626 0.51
475 136 0.11
476 457 0.37
477 7 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (473 bp):
AAGACTATGCTTATGGTGCCTAATCTTGAAACAAATGGGGATTAGTATGGGCATTCATGCTTGTC
TTATTTAAGAGACAAACTTTGATTCTATAAAAATTGTGGAAAGAAAACCTTTTCTTGCAACACCA
AAGCATCAATGTCATGTATCCTAATGAAGGAAAGTATTTTTGGCTCCCAATATTGAAAAGAATGG
AGACTATTACGAGAATCAAAGCTTGCCTAATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGG
GCAAAGAAAAGATTTCTTGCAAAAGAAAATCATCAATATCTTTTATCCTAATGAGGAGAATGTGT
TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGA
CACGAACTTAGACTTTACAAAAATTGAGGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAAT
ATCATGTATCCTTACGAG
Found at i:6476 original size:950 final size:950
Alignment explanation
Indices: 4632--6566 Score: 2783
Period size: 950 Copynumber: 2.0 Consensus size: 950
4622 TGATTTCTAT
* * *
4632 AAGACCATGCTTATAGTGCCTAATCTTGAAACAAATGGGGATTTGTATGGGCATTCATGTTTGTC
1 AAGACTATGCTTATGGTGCCTAATCTTGAAACAAATGGGGATTAGTATGGGCATTCATGTTTGTC
* * *
4697 TTATTTAAGAGACAAACTTTGATTCTATAAGAAATTGTGGAAATAAAACTTTTTCTTGCAACACT
66 TTATTTAAGAGACAAACTTTGATTCTATAAGAAATTGTGGAAAGAAAACCTTTTCTTGCAACACC
* * * *
4762 AAAGCATCAGTGTCATTTATCCTAATGAATCAAATGTATTTTTGGCTCCCAATGTTGAAAAGAAT
131 AAAGCATCAATGTCATTTATCCTAATGAAGCAAAAGTATTTTTGGCTCCCAATATTGAAAAGAAT
* * * *
4827 GGAGTCTGTTATGAGAATCAAAGCTTGCCTTATTTAAGGGATGAACTTTGATTTTATGAAAAACA
196 GGAGTCTATTACGAGAATCAAAGCTTGCCTAATTGAAGGGATGAACTTTGATTTTATGAAAAACA
* * *
4892 GGGCAAATAAAAGATTTCCTTGCAAAATAAAATCATCAATATCTTTTATCCTAATGAGGAGAATG
261 GGGCAAATAAAAGATTTCCATGCAAAAGAAAATCATCAATATCTTTTATCCGAATGAGGAGAATG
* **
4957 TGTTTATGGTGACCAATCATAAAATGAATGAAGATCATTCCTAGAATCCACGTTTGTCTCATTTG
326 TGTTAACAGTGACCAATCATAAAATGAATGAAGATCATTCCTAGAATCCACGTTTGTCTCATTTG
*
5022 AGACAAGAATTTAGACTTTACAAAAATTAGGGGAAGAAAGCCTTTCCTGCGAAACCAAGCACCAA
391 AGACAAGAATTTAGACTTCACAAAAATTAGGGGAAGAAAGCCTTTCCTGCGAAACCAAGCACCAA
* * * *
5087 TATCGTGTATCCGTACGAGAAGACTATGCTTATGGTGCCTAATCTTGAAATGAATGGGGATTAGT
456 AATCATGTATCCGTAAGAGAAGACTATGCTTATGGTGCCTAATCTTGAAACGAATGGGGATTAGT
* * * *
5152 ATGGGCATTCATGCTTGTGTTATTTAAGAGATAAACTTTGATTCTATAAAAAATGGTGGAAAGAA
521 ATGGGCATTCATGCTTGTCTTATTTAAGAGACAAACTTTGATTCTAGAAAAAATGATGGAAAGAA
* ** *
5217 AACCTTTTCTTGCAACACCAAAACATCAATGTCAAGTGTCATAAGGAACGGAATGTGTTTTTGGT
586 AACATCATCTTGCAACACCAAAACATCAATGTCAAGTATCATAAGGAACGGAATGTGTTTTTGGT
* * * **
5282 TTCCCATATTGAAAAGAATGGAGACTATTATGAGAATCAATGCTTGCCTAATTTAAGGGATAAAC
651 TCCCCATATTCAAAAGAATGGAGACTATTACGAGAATCAATGCTTGCCTAATAAAAGGGATAAAC
** *
5347 TTTCATTGTAAGGAAAATGGGGCAAAGAAAAGATTTCTAAGCAAAAGAAAATCATCAATATCTTT
716 TTTCATTGTAAGGAAAATAAGGCAAAGAAAAGATTTCTAAGCAAAAGAAAATCATCAATATCATT
5412 TATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCGCAAAATGAATGAAGATCATTACTAGAA
781 TATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCGCAAAATGAATGAAGATCATTACTAGAA
* *
5477 TCAATGTTGATCTCTTTTGAGGCACGGACTTAGACTTTACAAAAATTGGGGGGAAGAAAGCCTTT
846 TCAATGTTGATCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGGGGGAAGAAAGCCTTT
*
5542 ATTGCGAAACCAAAGCATTAATATCATGTACCCTTACGAG
911 ATTGCGAAACCAAAGCATCAATATCATGTACCCTTACGAG
* *
5582 AAGACTATGCTTATGGTTCCTAATTTTGAAACAAATGGGGATTAGTATGGGCATTCATGTTTGTC
1 AAGACTATGCTTATGGTGCCTAATCTTGAAACAAATGGGGATTAGTATGGGCATTCATGTTTGTC
* *
5647 TTATTTAAGAGACAAACTTTGATTTTATAA-AACATTGTGGAAAGAAAACCTTTTCTTGCAATAC
66 TTATTTAAGAGACAAACTTTGATTCTATAAGAA-ATTGTGGAAAGAAAACCTTTTCTTGCAACAC
* * *
5711 CAAAGCATCAATGTCATTTATGCTATTGAAGGAAAAGTATTTTTGGCTCCCAATATTGAAAAGAA
130 CAAAGCATCAATGTCATTTATCCTAATGAAGCAAAAGTATTTTTGGCTCCCAATATTGAAAAGAA
*
5776 TGGAGTCTATTACGAGAATCAAAGCTTGCCTAATTGAAGGGATGAACTTTGATTTTATGAAAAAT
195 TGGAGTCTATTACGAGAATCAAAGCTTGCCTAATTGAAGGGATGAACTTTGATTTTATGAAAAAC
* * * *
5841 AGGGCAAATAAAAGATTTTCATGCGAAAGAAATTCATCAATATCTTTTATCCGAGTGAGGAGAAT
260 AGGGCAAATAAAAGATTTCCATGCAAAAGAAAATCATCAATATCTTTTATCCGAATGAGGAGAAT
* * * ** *
5906 GTGTTAACAGTGACTAATCATAAAATTAATGAAGATCTTTCCTAGAATTTATGTTTGTCTCATTT
325 GTGTTAACAGTGACCAATCATAAAATGAATGAAGATCATTCCTAGAATCCACGTTTGTCTCATTT
* * * *
5971 GAGACATGAATTTAGACTTCAC-AAAATCTGATGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCG
390 GAGACAAGAATTTAGACTTCACAAAAAT-T-AGGGGAAGAAAGCCTTTCCTGCGAAACC-AAGCA
* * *
6035 TCAAAATCATGTATCC-TAAAGAGTAGACTATGTTTATGGTGCCTAATCTTGAAACGAATGGGGA
452 CCAAAATCATGTATCCGT-AAGAGAAGACTATGCTTATGGTGCCTAATCTTGAAACGAATGGGGA
* * * * *
6099 TTAGTAT-GGTATTTATGCTTGTCTTATTTAAGAGACAAACTTTGATTCTGGCAAAAATGATTGA
516 TTAGTATGGGCATTCATGCTTGTCTTATTTAAGAGACAAACTTTGATTCTAGAAAAAATGATGGA
* * * * * * *
6163 AAGAAAAGCATCAT-TTGCGAC-GCAAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT-TTT
581 AAGAAAA-CATCATCTTGCAACACCAAAA-CATCAATGTCAAGTATCATAAGGAACGGAATGTGT
* * *
6225 TTTTGGTTCCCCATATTCAAAA-AAGTGGTGACTGTTACG-GCAATCAATGCTTGCCTTATAAAA
644 TTTTGGTTCCCCATATTCAAAAGAA-TGGAGACTATTACGAG-AATCAATGCTTGCCTAATAAAA
* * * * * *
6288 GGTATGAACTTTGATTTTAAGGAAAATAAGGCAAAGTAAAGAGTTTCT-TGCAAAAGAAAATCAT
707 GGGATAAACTTTCATTGTAAGGAAAATAAGGCAAAGAAAAGA-TTTCTAAGCAAAAGAAAATCAT
* * * *
6352 CAGTATCATTTATCCTAATGTGGAGAATGTGTTTATTGTGCCTAATCGCAAAATGAATGAAGATC
771 CAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCGCAAAATGAATGAAGATC
* *
6417 ATTACTAGAATCAATGTTTATCTCATTTGAGGTACGAACTTAGACTTTACAAAAATTGGGGGGAA
836 ATTACTAGAATCAATGTTGATCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGGGGGAA
* * * *
6482 GAAAGCTTTTTTTGCGAAACCAAAGCATCAATATCGTGTATCCTTACGAG
901 GAAAGCCTTTATTGCGAAACCAAAGCATCAATATCATGTACCCTTACGAG
* * *
6532 AAAACTATGCTTATGGTGCCTGATCTTGAGACAAA
1 AAGACTATGCTTATGGTGCCTAATCTTGAAACAAA
6567 CTTTGATTCT
Statistics
Matches: 870, Mismatches: 105, Indels: 20
0.87 0.11 0.02
Matches are distributed among these distances:
949 10 0.01
950 672 0.77
951 119 0.14
952 69 0.08
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (950 bp):
AAGACTATGCTTATGGTGCCTAATCTTGAAACAAATGGGGATTAGTATGGGCATTCATGTTTGTC
TTATTTAAGAGACAAACTTTGATTCTATAAGAAATTGTGGAAAGAAAACCTTTTCTTGCAACACC
AAAGCATCAATGTCATTTATCCTAATGAAGCAAAAGTATTTTTGGCTCCCAATATTGAAAAGAAT
GGAGTCTATTACGAGAATCAAAGCTTGCCTAATTGAAGGGATGAACTTTGATTTTATGAAAAACA
GGGCAAATAAAAGATTTCCATGCAAAAGAAAATCATCAATATCTTTTATCCGAATGAGGAGAATG
TGTTAACAGTGACCAATCATAAAATGAATGAAGATCATTCCTAGAATCCACGTTTGTCTCATTTG
AGACAAGAATTTAGACTTCACAAAAATTAGGGGAAGAAAGCCTTTCCTGCGAAACCAAGCACCAA
AATCATGTATCCGTAAGAGAAGACTATGCTTATGGTGCCTAATCTTGAAACGAATGGGGATTAGT
ATGGGCATTCATGCTTGTCTTATTTAAGAGACAAACTTTGATTCTAGAAAAAATGATGGAAAGAA
AACATCATCTTGCAACACCAAAACATCAATGTCAAGTATCATAAGGAACGGAATGTGTTTTTGGT
TCCCCATATTCAAAAGAATGGAGACTATTACGAGAATCAATGCTTGCCTAATAAAAGGGATAAAC
TTTCATTGTAAGGAAAATAAGGCAAAGAAAAGATTTCTAAGCAAAAGAAAATCATCAATATCATT
TATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCGCAAAATGAATGAAGATCATTACTAGAA
TCAATGTTGATCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGGGGGAAGAAAGCCTTT
ATTGCGAAACCAAAGCATCAATATCATGTACCCTTACGAG
Found at i:6933 original size:429 final size:429
Alignment explanation
Indices: 6187--6989 Score: 1193
Period size: 429 Copynumber: 1.9 Consensus size: 429
6177 TTGCGACGCA
* * * * * *
6187 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATTTTTTTTGGTTCCCCATATTCAAAAAAGTG
1 AAAGCATCAATGTCATGTATCCTAATGAAGGAAAGTATTTTTGGTTCCCAAGATTCAAAAAAATG
* *
6252 GTGACTGTTACGGCAATCAATGCTTGCCTTATAAAAGGTATGAACTTTGATTTTAAGGAAAATAA
66 GAGACTGTTACGGCAATCAATGCTTGCCTTATAAAAGGAATGAACTTTGATTTTAAGGAAAATAA
** * *
6317 GGCAAAGTAAAGAGTTTCTTGCAAAAGAAAATCATCAGTATCATTTATCCTAATGTGGAGAATGT
131 GGCAAAGTAAAGAGTTTCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* *
6382 GTTTATTGTGCCTAATCGCAAAATGAATGAAGATCATTACTAGAATCAATGTTTATCTCATTTGA
196 GTTTATAGTGCCTAATCGCAAAATGAATGAACATCATTACTAGAATCAATGTTTATCTCATTTGA
* * * * * *
6447 GGTACGAACTTAGACTTTACAAAAATTGGGGGGAAGAAAGCTTTTTTTGCGAAACCAAAGCATCA
261 GGCACGAACTTAGACTTCACAAAAATTGGGGGAAAGAAAGCCTTTCTTGCAAAACCAAAGCATCA
** ** * *
6512 ATATCGTGTATCCTTACGAGAAAACTATGCTTATGGTGCCTGATCTTGAGACAAACTTTGATTCT
326 ATATCAAGTATCCTTACGAGAAAACTAAACTTATGATGCCTAATCTTGAGACAAACTTTGATTCT
6577 ATAAAAAATTGAGGAAAGAAAACCTTTTCTTGCATCACC
391 ATAAAAAATTGAGGAAAGAAAACCTTTTCTTGCATCACC
* * *
6616 AAAGCGTCAATGTCATTTATCCTATTGAAGGAAAAGTATTTTTGGTTCCCAAGATT-AAAAAGAA
1 AAAGCATCAATGTCATGTATCCTAATGAAGG-AAAGTATTTTTGGTTCCCAAGATTCAAAAA-AA
* **
6680 TGGAGACTGTTATGAG-AATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGG-AAA
64 TGGAGACTGTTACG-GCAATCAATGCTTGCCTTATAAAAGGAATGAACTTTGATTTTAAGGAAAA
*
6743 TAGGGCAAAG-AATAGA-TTTCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
128 TAAGGCAAAGTAA-AGAGTTT-CAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* *
6806 AATGTGTTTATAGTGCCTAATTGCAAAATGAATGAACATCGTTACTAGAATCAATGTTTATCTCA
191 AATGTGTTTATAGTGCCTAATCGCAAAATGAATGAACATCATTACTAGAATCAATGTTTATCTCA
6871 TTTGAGGCACGAACTTAGACTTCACAAAAATTGGGGGAAAGAAAGCCTTTCTTGCAAAACCAAAG
256 TTTGAGGCACGAACTTAGACTTCACAAAAATTGGGGGAAAGAAAGCCTTTCTTGCAAAACCAAAG
* *
6936 CATCAATATCAAGTATCTTTACGAGAAGACTAAACTTATGATGCCTAATCTTGA
321 CATCAATATCAAGTATCCTTACGAGAAAACTAAACTTATGATGCCTAATCTTGA
6990 AACGAATGGG
Statistics
Matches: 332, Mismatches: 37, Indels: 10
0.88 0.10 0.03
Matches are distributed among these distances:
428 5 0.02
429 253 0.76
430 73 0.22
431 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (429 bp):
AAAGCATCAATGTCATGTATCCTAATGAAGGAAAGTATTTTTGGTTCCCAAGATTCAAAAAAATG
GAGACTGTTACGGCAATCAATGCTTGCCTTATAAAAGGAATGAACTTTGATTTTAAGGAAAATAA
GGCAAAGTAAAGAGTTTCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
GTTTATAGTGCCTAATCGCAAAATGAATGAACATCATTACTAGAATCAATGTTTATCTCATTTGA
GGCACGAACTTAGACTTCACAAAAATTGGGGGAAAGAAAGCCTTTCTTGCAAAACCAAAGCATCA
ATATCAAGTATCCTTACGAGAAAACTAAACTTATGATGCCTAATCTTGAGACAAACTTTGATTCT
ATAAAAAATTGAGGAAAGAAAACCTTTTCTTGCATCACC
Found at i:7203 original size:159 final size:157
Alignment explanation
Indices: 6564--7530 Score: 395
Period size: 159 Copynumber: 6.1 Consensus size: 157
6554 ATCTTGAGAC
* * * * * *
6564 AAACTTTGATTCTATAAAAAATTGAGGAAAGAAAACCTTTTCTTGCATCACCAAAGCGTCAATGT
1 AAACTTTGATT-TATAAAAAATGGTGGAAAGAAAA-CATTTCTTGCAACACCAAAACATCAATGT
* * * * * * * * *
6629 CATTTATCCTATTGAA-GGAAAAGTATTTTTGGTTCCCAAGATTAAAAAGAATGGAGACTGTTAT
64 CATGTATCCTAATGAACAG-AATGT-GTTTTGGTTCCCTATATTGAAAAGAATGGAGACTATTAT
*
6693 GAGAATCAATGCTTGCCTTATTTAA-GGAAT
127 GAGAATCAATGCTTGCCTTATTTAAGGGACT
* * * * * ** **
6723 GAACTTTGATTT-TAAGGAAATAGG-GCAAAGAATAGATTTCCAAGCAA-AAGAAAATCATCAAT
1 AAACTTTGATTTATAA-AAAAT-GGTGGAAAGAAAACATTT-CTTGCAACACCAAAA-CATCAAT
* * ** * *
6785 ATCATTTATCCTAATGAGGAGAATGTGTTTATAG-TGCCTA-ATTGCAAAATGAAT-GA-ACATC
62 GTCATGTATCCTAATGAACAGAATGTGTTT-TGGTTCCCTATATTG-AAAA-GAATGGAGAC-T-
* * ** * * *
6846 GTTACT-AGAATCAATGTTTATCTCATTTGAGGCAC-
122 ATTA-TGAGAATCAATGCTTGCCTTATTTAAGGGACT
* * * * * * * * * * *
6881 GAACTTAGACTTCACAAAAATTGGGGGAAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATC
1 AAACTTTGA-TTTATAAAAAATGGTGGAAAGAAAACATTTCTTGCAACACCAAAACATCAATGTC
* * * * * *** * * * * * * * *
6946 AAGTATCTTTACGAGA-AGACTAAACTTAT-GATGCCTAATCTTGAAACGAATGGGGATTAGTAT
65 ATGTATCCTAATGA-ACAGAAT-GTGTTTTGGTTCCCT-ATATTGAAAAGAATGGAGACTATTAT
* * * * * *
7009 GGGCATTC-ACGTTTGTCTTATTTAAGAGACT
127 GAG-AATCAATGCTTGCCTTATTTAAGGGACT
*
7040 -AACTTTGATTCTATAAAAAATGGTGGAAAGAAAACCTTTTCTTGCAACACCAAAACATCAATGT
1 AAACTTTGATT-TATAAAAAATGGTGGAAAGAAAA-CATTTCTTGCAACACCAAAACATCAATGT
* * *
7104 CATGTGTCATAATGAACAGAATGTGTTTTCGGTTCCCCATATTGAAAAGAATGGAGACTATTATG
64 CATGTATCCTAATGAACAGAATGTGTTTT-GGTTCCCTATATTGAAAAGAATGGAGACTATTATG
7169 AGAATCAATGCTTGCCTTATTTAAGGGA-T
128 AGAATCAATGCTTGCCTTATTTAAGGGACT
* * * * ** *
7198 AAACTTTCATTT-TAAGGAAAATGG-GGCAAAGAAAAGATATCTAAGCAA-AAGAAAATCATCAT
1 AAACTTTGATTTATAA--AAAATGGTGG-AAAGAAAACATTTCT-TGCAACACCAAAA-CATCAA
* * * ** * * * * *
7260 TATCATTTATCCTAAAGAGGAGAATGTGCTTATAG-TGCCTA-ATCGCAAAATGAATGAAGA-TC
61 TGTCATGTATCCTAATGAACAGAATGTG-TTTTGGTTCCCTATATTG-AAAA-GAATGGAGACT-
* ** * *
7322 ATTACT-AGAATCAATGTTTATCTCATTTGAGGCACGAACTT
122 ATTA-TGAGAATCAATGCTTGCCTTATTTAAGG---G-AC-T
* * *
7363 AGACTTTGATTTTATAAAAAATGGTGGAAAGAAAATCGTTTCTTGCAACACCAAAGCATCAATGT
1 AAACTTTGA-TTTATAAAAAATGGTGGAAAGAAAA-CATTTCTTGCAACACCAAAACATCAATGT
* ** * * *
7428 CACGTATCCTAATGAAGGCACTATGT-TTTTGGTTCCCTTTATTGAAAAGAATGGTGACT-CTAT
64 CATGTATCCTAATGAA--CAGAATGTGTTTTGGTTCCCTATATTGAAAAGAATGGAGACTATTAT
*
7491 G-GCAATCAATGCTTGCCTTATATAAGGGA-T
127 GAG-AATCAATGCTTGCCTTATTTAAGGGACT
*
7521 GAACTTTGAT
1 AAACTTTGAT
7531 GTTTCAGGAA
Statistics
Matches: 582, Mismatches: 165, Indels: 124
0.67 0.19 0.14
Matches are distributed among these distances:
156 5 0.01
157 35 0.06
158 200 0.34
159 212 0.36
160 15 0.03
161 1 0.00
162 1 0.00
163 3 0.01
164 20 0.03
165 57 0.10
166 22 0.04
167 11 0.02
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (157 bp):
AAACTTTGATTTATAAAAAATGGTGGAAAGAAAACATTTCTTGCAACACCAAAACATCAATGTCA
TGTATCCTAATGAACAGAATGTGTTTTGGTTCCCTATATTGAAAAGAATGGAGACTATTATGAGA
ATCAATGCTTGCCTTATTTAAGGGACT
Found at i:7647 original size:324 final size:324
Alignment explanation
Indices: 7041--7693 Score: 875
Period size: 324 Copynumber: 2.0 Consensus size: 324
7031 TAAGAGACTA
*
7041 ACTTTGATTCTATAAAAAATGGTGGAAAGAAAACCTTTTCTTGCAACACCAAAACATCAATGTCA
1 ACTTTGATTCTATAAAAAATGGTGGAAAGAAAACCGTTTCTTGCAACACCAAAACATCAATGTCA
* * * *
7106 TGTGTCATAATGAACAGAATGTGTTTTCGGTTCCCCATATTGAAAAGAATGGAGACTATTATGAG
66 CGTATCATAATGAACACAATGTGTTTTCGGTTCCCCATATTGAAAAGAATGGAGACTACTATGAG
* **
7171 AATCAATGCTTGCCTTATTTAAGGGATAAACTTTCATTTTAAGGAAAATGGGGCAAAGAAAAGAT
131 AATCAATGCTTGCCTTATATAAGGGATAAACTTTCATTTTAAGGAAAATAAGGCAAAGAAAAGAT
* *
7236 ATCTAAGCAAAAGAAAATCATCATTATCATTTATCCTAAAGAGGAGAATGTGCTTATAGTGCCTA
196 ATCTAAGCAAAAGAAAATCAACAGTATCATTTATCCTAAAGAGGAGAATGTGCTTATAGTGCCTA
* * * *
7301 ATCGCAAAATGAATGAAGATCATTACTAGAATCAATGTTTATCTCATTTGAGGCACGAACTTAG
261 ATCCCAAAATGAATGAAGATCATTACCAGAATCAATGTTTATCTCATTTGAGGAACAAACTTAG
* * *
7365 ACTTTGATTTTATAAAAAATGGTGGAAAGAAAATCGTTTCTTGCAACACCAAAGCATCAATGTCA
1 ACTTTGATTCTATAAAAAATGGTGGAAAGAAAACCGTTTCTTGCAACACCAAAACATCAATGTCA
* * ** *
7430 CGTATCCTAATGAAGGCACTATGT-TTTT-GGTTCCCTTTATTGAAAAGAATGGTGACT-CTATG
66 CGTATCATAATGAA--CACAATGTGTTTTCGGTTCCCCATATTGAAAAGAATGGAGACTACTATG
* * * *
7492 -GCAATCAATGCTTGCCTTATATAAGGGATGAACTTTGATGTTTCAGGAAAATAAGGCCAAGAAA
129 AG-AATCAATGCTTGCCTTATATAAGGGATAAACTTTCAT-TTTAAGGAAAATAAGGCAAAGAAA
* * ** *
7556 AGAGT-TTTATGCAAAAGAAAATCAACAGTATCATTTATCCTAATTAGGAGAATGTGTTTATAGT
192 AGA-TATCTAAGCAAAAGAAAATCAACAGTATCATTTATCCTAAAGAGGAGAATGTGCTTATAGT
* * * ** * * *
7620 GCCTAATCCCAGAATGATTGTAGATCATTACCAGAATCCTTGTTTTTCTTATTTGTGGAACAAAC
256 GCCTAATCCCAAAATGAATGAAGATCATTACCAGAATCAATGTTTATCTCATTTGAGGAACAAAC
7685 TTAG
321 TTAG
7689 ACTTT
1 ACTTT
7694 ACAGAAATAG
Statistics
Matches: 285, Mismatches: 39, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
322 1 0.00
323 38 0.13
324 235 0.82
325 5 0.02
326 6 0.02
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (324 bp):
ACTTTGATTCTATAAAAAATGGTGGAAAGAAAACCGTTTCTTGCAACACCAAAACATCAATGTCA
CGTATCATAATGAACACAATGTGTTTTCGGTTCCCCATATTGAAAAGAATGGAGACTACTATGAG
AATCAATGCTTGCCTTATATAAGGGATAAACTTTCATTTTAAGGAAAATAAGGCAAAGAAAAGAT
ATCTAAGCAAAAGAAAATCAACAGTATCATTTATCCTAAAGAGGAGAATGTGCTTATAGTGCCTA
ATCCCAAAATGAATGAAGATCATTACCAGAATCAATGTTTATCTCATTTGAGGAACAAACTTAG
Found at i:8106 original size:798 final size:799
Alignment explanation
Indices: 6566--8167 Score: 2221
Period size: 798 Copynumber: 2.0 Consensus size: 799
6556 CTTGAGACAA
* * * *
6566 ACTTTGATTCTATAAAAAATTGAGGAAAGAAAACCTTTTCTTGCATCACCAAAGCGTCAATGTCA
1 ACTTTGATTCTATAAAAAATGGAGGAAAGAAAACCGTTTCTTGCAACACCAAAGCATCAATGTCA
** * *
6631 TTTATCCTATTGAAGGAAAAGTATTTTTGGTTCCCAAGATTAAAAAGAATGGAGACTGTTATGAG
66 CGTATCCTAATGAAGGAAAAGTATTTTTGGTTCCCAAGATTAAAAAGAATGGAGACTGCTATGAG
* * *
6696 AATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAATAGGGCAAAGAATAGATT
131 AATCAATGCTTGCCTTATATAAGGAATGAACTTTGATTTTAAGGAAATAAGGCAAAGAAAAGATT
*
6761 TCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
196 TCCAAGCAAAAGAAAATCAACAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
** * * * *
6826 TTGCAAAATGAATGAACATCGTTACTAGAATCAATGTTTATCTCATTTGAGGCACGAACTTAGAC
261 TCCCAAAATGAATGAACATCATTACCAGAATCAATGTTTATCTCATTTGAGGAACAAACTTAGAC
* * *
6891 TTCACAAAAATTGGGGGAAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCAAGTATCTTT
326 TTCACAAAAATAGGGGGAAAGAAAGCCTTTCTTACAAAACCAAAGCATCAATATCAAGTATCCTT
6956 ACGAGAAGACTAAACTTATGATGCCTAATCTTGAAACGAATGGGGATTAGTATGGGCATTCACGT
391 ACGAGAAGACTAAACTTATGATGCCTAATCTTGAAACGAATGGGGATTAGTATGGGCATTCACGT
* *
7021 TTGTCTTATTTAAGAGACTAACTTTGATTCTATAAAAAATGGTGGAAAGAAAACCTTTTCTTGCA
456 TTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGATGGAAAGAAAACCTTTTCTTGCA
** * * *
7086 ACACCAAAACATCAATGTCATGTGTCATAATGAACAGAATGTGTTTTCGGTTCCCCATATTGAAA
521 ACACCAAAACATCAATGTCATGTACCATAATGAACAGAATGTATTTTCGGCTCCCAATATTGAAA
**
7151 AGAATGGAGACTATTATGAGAATCAATGCTTGCCTTATTTAAGGGATAAACTTTCATTTTAAGGA
586 AGAATGGAGACTATTATGAGAATCAATGCTTGCCTTATTTAAGGGATAAACAATCATTTTAAGGA
* * *
7216 AAATGGGGCAAAGAAAAGATATCTAAGCAAAAGAAAATCATCATTATCATTTATCCTAAAGAGGA
651 AAATAGGGCAAAGAAAAGATATCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGA
* *
7281 GAATGTGCTTATAGTGCCTAATCGCAAAATGAATGAAGATCATTACTAGAATCAATGTTTATCTC
716 GAATGTGCTTATAGTGCCTAATCGCAAAATGAATGAAGATAATTACTAGAATCAATGTTCATCTC
7346 AT-TTGAGGCACGAACTTAG
781 -TGTTGAGGCACGAACTTAG
* * *
7365 ACTTTGATTTTATAAAAAATGGTGGAAAGAAAATCGTTTCTTGCAACACCAAAGCATCAATGTCA
1 ACTTTGATTCTATAAAAAATGGAGGAAAGAAAACCGTTTCTTGCAACACCAAAGCATCAATGTCA
** * *** * *
7430 CGTATCCTAATGAAGGCACTA-TGTTTTTGGTTCCCTTTATTGAAAAGAATGGTGACT-CTATG-
66 CGTATCCTAATGAAGG-AAAAGTATTTTTGGTTCCCAAGATTAAAAAGAATGGAGACTGCTATGA
* * *
7492 GCAATCAATGCTTGCCTTATATAAGGGATGAACTTTGATGTTTCAGGAAAATAAGGCCAAGAAAA
130 G-AATCAATGCTTGCCTTATATAAGGAATGAACTTTGAT-TTTAAGG-AAATAAGGCAAAGAAAA
* * * *
7557 GAGTTT-TATGCAAAAGAAAATCAACAGTATCATTTATCCTAATTAGGAGAATGTGTTTATAGTG
192 GA-TTTCCAAGCAAAAGAAAATCAACAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * * * ** * * *
7621 CCTAATCCCAGAATGATTGTAGATCATTACCAGAATCCTTGTTTTTCTTATTTGTGGAACAAACT
256 CCTAATCCCAAAATGAATGAACATCATTACCAGAATCAATGTTTATCTCATTTGAGGAACAAACT
* * * * * ** **
7686 TAGACTTTACAGAAATAGGGGG-AAGAAAGCTTTTGTTACGAAACCAAAGTGTCAATATCGTGTA
321 TAGACTTCACAAAAATAGGGGGAAAGAAAGCCTTTCTTACAAAACCAAAGCATCAATATCAAGTA
** *
7750 TCCTTACGAGAAGACTATGCTTATGGTGCCTAATCTTGAAACGAATGGGGATTAGTATGGGCATT
386 TCCTTACGAGAAGACTAAACTTATGATGCCTAATCTTGAAACGAATGGGGATTAGTATGGGCATT
* * * *
7815 -ATGTTTGTTTTATTTAAGAGACAAACTTTGATTCTATAAAAAATTATGGAAAGAAAACTTTTTC
451 CACGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGATGGAAAGAAAACCTTTTC
* ** * ** * *
7879 TTGCAATACCAAGGCATCAATGTCATTTACCATAATGAAGGGAATGTATTTTTGGCTCCCAATGT
516 TTGCAACACCAAAACATCAATGTCATGTACCATAATGAACAGAATGTATTTTCGGCTCCCAATAT
* * * * *
7944 TGAAAAGAATGGAGTCTGTTATGAGAATCAATGCTTGTCTTATTTAAGGGATGAACAATGATTTT
581 TGAAAAGAATGGAGACTATTATGAGAATCAATGCTTGCCTTATTTAAGGGATAAACAATCATTTT
* *
8009 AAGGAAAATAGGGTAAAGAAAAGAT-TACCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
646 AAGGAAAATAGGGCAAAGAAAAGATAT-CCAAGCAAAAGAAAATCATCAATATCATTTATCCTAA
* * *
8073 TGAGGAGAATGTGTTTATAGTGCCTACTCGCAAAATGAATGAAGATAATTACTAGAATCAATGTT
710 AGAGGAGAATGTGCTTATAGTGCCTAATCGCAAAATGAATGAAGATAATTACTAGAATCAATGTT
8138 CATCTCTGTTGAGGCACGAACTTAG
775 CATCTCTGTTGAGGCACGAACTTAG
8163 ACTTT
1 ACTTT
8168 ACAAAAATTG
Statistics
Matches: 700, Mismatches: 96, Indels: 15
0.86 0.12 0.02
Matches are distributed among these distances:
797 3 0.00
798 352 0.50
799 202 0.29
800 140 0.20
801 3 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (799 bp):
ACTTTGATTCTATAAAAAATGGAGGAAAGAAAACCGTTTCTTGCAACACCAAAGCATCAATGTCA
CGTATCCTAATGAAGGAAAAGTATTTTTGGTTCCCAAGATTAAAAAGAATGGAGACTGCTATGAG
AATCAATGCTTGCCTTATATAAGGAATGAACTTTGATTTTAAGGAAATAAGGCAAAGAAAAGATT
TCCAAGCAAAAGAAAATCAACAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
TCCCAAAATGAATGAACATCATTACCAGAATCAATGTTTATCTCATTTGAGGAACAAACTTAGAC
TTCACAAAAATAGGGGGAAAGAAAGCCTTTCTTACAAAACCAAAGCATCAATATCAAGTATCCTT
ACGAGAAGACTAAACTTATGATGCCTAATCTTGAAACGAATGGGGATTAGTATGGGCATTCACGT
TTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGATGGAAAGAAAACCTTTTCTTGCA
ACACCAAAACATCAATGTCATGTACCATAATGAACAGAATGTATTTTCGGCTCCCAATATTGAAA
AGAATGGAGACTATTATGAGAATCAATGCTTGCCTTATTTAAGGGATAAACAATCATTTTAAGGA
AAATAGGGCAAAGAAAAGATATCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGA
GAATGTGCTTATAGTGCCTAATCGCAAAATGAATGAAGATAATTACTAGAATCAATGTTCATCTC
TGTTGAGGCACGAACTTAG
Found at i:8437 original size:476 final size:473
Alignment explanation
Indices: 7365--8996 Score: 1974
Period size: 476 Copynumber: 3.4 Consensus size: 473
7355 ACGAACTTAG
* * * *
7365 ACTTTGATTTTATAAAAAATGGTGGAAAGAAAATCGTTTCTTGCAACACCAAAGCATCAATGTCA
1 ACTTTGATTCTATAAAAAATTGTGGAAAGAAAACCTTTTCTTGCAACACCAAAGCATCAATGTCA
* ** * * ** * * *
7430 CGTATCCTAATGAAGGCACTA-TGTTTTTGGTTCCCTTTATTGAAAAGAATGGTGACT-CTATG-
66 TGTATCCTAATGAAGG-AAAAGTATTTTTGGCTCCCAATATTGAAAAGAATGGAGACTGTTACGA
* * * * *
7492 GCAATCAATGCTTGCCTTATATAAGGGATGAACTTTGATGTTTCAGGAAAATAAGGCCAAGAAAA
130 G-AATCAATGCTTGCCTTATTTAAGGGATGAACATTGAT-TTTAAGGAAAATAGGGCAAAGAAAA
* * * * *
7557 GAGTTT-TATGCAAAAGAAAATCAACAGTATCATTTATCCTAATTAGGAGAATGTGTTTATAGTG
193 GA-TTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * * * * * * * * * *
7621 CCTAATCCCAGAATGATTGTAGATCATTACCAGAATCCTTGTTTTTCTTATTTGTGGAACAAACT
257 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATC-TCTTTGAGGCACGAACT
* * * * ** *
7686 TAGACTTTACAGAAATAGGGGGAAGAAAGCTTTTGTTACGAAACCAAAGTGTCAATATCGTGTAT
321 TAGACTTTACAAAAATTGGGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCATGTAT
*
7751 CCTTACGAGAAGACTATGCTTATGGTGCCTAATCTTGAAACGAATGGGGATTAGTATGGGCATT-
386 CCTTACGAGAAGACTATTCTTATGGTGCCTAATCTTGAAACGAAT-GGGATTAGTATGGGCATTC
*
7815 ATGTTTGTTTTATTTAAGAGACAA
450 ATGTTTGTCTTATTTAAGAGACAA
* * * *
7839 ACTTTGATTCTATAAAAAATTATGGAAAGAAAACTTTTTCTTGCAATACCAAGGCATCAATGTCA
1 ACTTTGATTCTATAAAAAATTGTGGAAAGAAAACCTTTTCTTGCAACACCAAAGCATCAATGTCA
* * * * * *
7904 TTTA-CCATAATGAAGGGAATGTATTTTTGGCTCCCAATGTTGAAAAGAATGGAGTCTGTTATGA
66 TGTATCC-TAATGAAGGAAAAGTATTTTTGGCTCCCAATATTGAAAAGAATGGAGACTGTTACGA
* * *
7968 GAATCAATGCTTGTCTTATTTAAGGGATGAACAATGATTTTAAGGAAAATAGGGTAAAGAAAAGA
130 GAATCAATGCTTGCCTTATTTAAGGGATGAACATTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
* *
8033 TTACCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
195 TTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * * * *
8098 ACTCGCAAAATGAATGAAGATAATTACTAGAATCAATGTTCATCTCTGTTGAGGCACGAACTTAG
260 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCT-TTGAGGCACGAACTTAG
* *
8163 ACTTTACAAAAATTGCGGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCTTGTATCC
324 ACTTTACAAAAATTG-GGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCATGTATCC
* * * *
8228 TTGCGAGAAGACTATTCTTATGGTGCCTAATCTTGAAACAAATCAGGATTAGTATAGGCATTCAT
388 TTACGAGAAGACTATTCTTATGGTGCCTAATCTTGAAACGAAT-GGGATTAGTATGGGCATTCAT
*
8293 GTTTGTCTTACTTAAGAGACAA
452 GTTTGTCTTATTTAAGAGACAA
* * * *
8315 ACTTTGATTCTATAAAAAATTGTGAAAAGAAAGCCTTTTCTTGCAATACCAAACCATCAATGTCA
1 ACTTTGATTCTATAAAAAATTGTGGAAAGAAAACCTTTTCTTGCAACACCAAAGCATCAATGTCA
* * * * *
8380 TTTATTCTATTGAAGGAAAAGTATTTTTGGCTCCCAATATT-AAAAGGAATGGAGTCTGTCACGA
66 TGTATCCTAATGAAGGAAAAGTATTTTTGGCTCCCAATATTGAAAA-GAATGGAGACTGTTACGA
* * * * * *
8444 GAATCAAAGCTTGCCTAATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGCGCAAATAAAAGA
130 GAATCAATGCTTGCCTTATTTAAGGGATGAACATTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
* * *
8509 TTTCCACGCAAAAGAAAATCATTAATATCATTTATCCTAGTGAGGAGAATGTGTTTATAGTGACT
195 TTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * * ** * *
8574 AAACATAAAATGAATGAAGATCATTCCTAGAATCCATGTTTGCCTCATTTGAGACACGAATTTAG
260 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTC-TTTGAGGCACGAACTTAG
* * * *
8639 ACTTTACAAAATTTGGTGGGATGAAAGCCTTTCTTATGAAACCAAAGCATCAATATCATGTATCA
324 ACTTTACAAAAATTGG-GGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCATGTATCC
* * *
8704 TAATGAGAAGACAATGT-TTATGGTGCCTAATCTTGAAACGAATGGAGATTAGTATGGGTC-TTC
388 TTACGAGAAGACTAT-TCTTATGGTGCCTAATCTTGAAACGAATGG-GATTAGTATGGG-CATTC
8767 ATGTTTGTCTTATTTAAGAG-CAA
450 ATGTTTGTCTTATTTAAGAGACAA
* ** * * * *
8790 A-TTGTGATTTTACCAAAAA-CGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATTT
1 ACTT-TGATTCTATAAAAAATTG-TGGAAAGAAAACCTTTTCTTGCAACACCAAAGCATCAATGT
* * * * * *
8853 TATGTATCCAAATGAAGGGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTGTTACG
64 CATGTATCCTAATGAAGGAAAAGTATTTTTGGCTCCCAATATTGAAAAGAATGGAGACTGTTACG
8918 AGAATCAATGCTTGCCTTATTTAAGGGATGAACATTGATTTTAAGGAAAATAGGGCAAAGAAAAG
129 AGAATCAATGCTTGCCTTATTTAAGGGATGAACATTGATTTTAAGGAAAATAGGGCAAAGAAAAG
8983 ATTTCCACGCAAAA
194 ATTTCCACGCAAAA
8997 TAGGGCAAAG
Statistics
Matches: 993, Mismatches: 147, Indels: 35
0.85 0.13 0.03
Matches are distributed among these distances:
473 6 0.01
474 240 0.24
475 314 0.32
476 429 0.43
477 4 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (473 bp):
ACTTTGATTCTATAAAAAATTGTGGAAAGAAAACCTTTTCTTGCAACACCAAAGCATCAATGTCA
TGTATCCTAATGAAGGAAAAGTATTTTTGGCTCCCAATATTGAAAAGAATGGAGACTGTTACGAG
AATCAATGCTTGCCTTATTTAAGGGATGAACATTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
TTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCTTTGAGGCACGAACTTAGAC
TTTACAAAAATTGGGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTTA
CGAGAAGACTATTCTTATGGTGCCTAATCTTGAAACGAATGGGATTAGTATGGGCATTCATGTTT
GTCTTATTTAAGAGACAA
Found at i:8986 original size:28 final size:28
Alignment explanation
Indices: 8954--9016 Score: 90
Period size: 29 Copynumber: 2.2 Consensus size: 28
8944 GATGAACATT
*
8954 GATTTTAAGGAAAATAGGGCAAAGAAAA
1 GATTTTAAGCAAAATAGGGCAAAGAAAA
* *
8982 GATTTCCACGCAAAATAGGGCAAAGAAAA
1 GATTT-TAAGCAAAATAGGGCAAAGAAAA
9011 GATTTT
1 GATTTT
9017 CAAGTAGAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 5 0.17
29 25 0.83
ACGTcount: A:0.48, C:0.10, G:0.22, T:0.21
Consensus pattern (28 bp):
GATTTTAAGCAAAATAGGGCAAAGAAAA
Found at i:15640 original size:346 final size:344
Alignment explanation
Indices: 14999--15677 Score: 956
Period size: 346 Copynumber: 2.0 Consensus size: 344
14989 CAACACCAAG
* *
14999 GCATCAATGTCATTTACCATAATTAAGGGAATGTATTTTTGGCTCCCAATGTTGAAAAGAATGGA
1 GCATCAATGTCATTTACCATAATGAAGGGAATGTATTTTTGGCTCCCAATATTGAAAAGAATGGA
* * * *
15064 GTCTATTATGAGAATCAATGCTTGCCTTATTTAAGGGATAAACATGGATTTTAAGGAAAATCGGG
66 GTCTATTACGAGAATCAAAGCTTGCCTTATTTAAGGGATAAACATGGATTTTAAGAAAAATAGGG
15129 CAAAACAAAGATTCCCACACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTAT
131 CAAAACAAAGATTCCCACACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTAT
* * *
15194 TTATAGTGACTAATCATAAAATGAGTGAATATCATTCCTACCATGTTTGTCTCATTTGAGACACG
196 TTATAGTGACTAATCATAAAATGAATG-A-ATCATTCCTACAATGTTTATCTCATTTGAGACACG
* * ** * *
15259 AATTTAGACTTTACAAAATTTGGTGGGTTGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCG
259 AACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCG
15324 TGTATCCTAATGAGAACTAAA
324 TGTATCCTAATGAGAACTAAA
*
15345 GCATCAGTGTCATTTATCC-TAATGAAGGGAATGTATTTTTGGCTCCCAATATTGAAAAGAATGG
1 GCATCAATGTCATTTA-CCATAATGAAGGGAATGTATTTTTGGCTCCCAATATTGAAAAGAATGG
* * * * * * *
15409 AGTTTGTTACGAGAATCAAAGCTTGCCTTTTTTAAGGGATGAACTTTGATTTTATGAAAAATAGG
65 AGTCTATTACGAGAATCAAAGCTTGCCTTATTTAAGGGATAAACATGGATTTTAAGAAAAATAGG
* *
15474 GCAAATA-AAAGATTTCCTA-GCAAAAGAAAATCATCAA-ATCATTTATCCTAATGAGGAGAATG
130 GCAAA-ACAAAGA-TTCCCACACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* * *
15536 TGTTTATAGTGACTAATCATAAAATGAATG-ATCATTGCTAGAATTAATGTTTATCTCATTTGAG
193 TATTTATAGTGACTAATCATAAAATGAATGAATCATTCCT---A-CAATGTTTATCTCATTTGAG
*
15600 GCACGAACTTAGACTTTACAAAAATTGG-GAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCA
254 ACACGAACTTAGACTTTACAAAAATTGGTG-GGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCA
*
15664 ATATCTTGTATCCT
318 ATATCGTGTATCCT
15678 TACGAGTAGA
Statistics
Matches: 295, Mismatches: 30, Indels: 16
0.87 0.09 0.05
Matches are distributed among these distances:
342 8 0.03
345 55 0.19
346 224 0.76
347 8 0.03
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (344 bp):
GCATCAATGTCATTTACCATAATGAAGGGAATGTATTTTTGGCTCCCAATATTGAAAAGAATGGA
GTCTATTACGAGAATCAAAGCTTGCCTTATTTAAGGGATAAACATGGATTTTAAGAAAAATAGGG
CAAAACAAAGATTCCCACACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTAT
TTATAGTGACTAATCATAAAATGAATGAATCATTCCTACAATGTTTATCTCATTTGAGACACGAA
CTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTG
TATCCTAATGAGAACTAAA
Found at i:16416 original size:475 final size:473
Alignment explanation
Indices: 15342--17143 Score: 2414
Period size: 462 Copynumber: 3.8 Consensus size: 473
15332 AATGAGAACT
15342 AAAGCATCAGTGTCATTTATCCTAATGAAGGGAATGTATTTTTGGCTCCCAATATTGAAAAGAAT
1 AAAGCATCAGTGTCATTTATCCTAATGAAGGGAATGTATTTTTGGCTCCCAATATTGAAAAGAAT
* *
15407 GGAGTTTGTTACGAGAATCAAAGCTTGCCTTTTTTAAGGGATGAACTTTGATTTTATGAAAAATA
66 GGAGTCTGTTACGAGAATCAAAGCTTGCCTTATTTAAGGGATGAACTTTGATTTTATGAAAAATA
*
15472 GGGCAAATAAAAGATTTCCTAGCAAAAGAAAATCATCAA-ATCATTTATCCTAATGAGGAGAATG
131 GGGCAAATAAAAGATTTCCTTGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
*
15536 TGTTTATAGTGACTAATCATAAAATGAAT---GATCATTGC-TAGAATTAATGTTTATCTCATTT
196 TGTTTATAGTGACTAATCATAAAATGAATGAAGATCATT-CTTAGAATCAATGTTTATCTCATTT
* * * *
15597 GAGGCACGAACTTAGACTTTACAAAAATTGGGAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCAT
260 GAGACACGAACTTAGACTTTACAAAATTTGGGGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCAT
* * * * *
15662 CAATATCTTGTATCCTTACGAGTAGACTATGCTTAGGGTTCCTAATCTTGAAATTAA-GGGGATT
325 CAATATCGTGTATCCTTACGAGAAGACTATGCTTATGGTGCCTAATCTTGAAATGAATGGGGATT
* * * *
15726 AGAATGGGCATTTATGTTT-TTTTATTTAAGAGACAAACTTTTATTCTATAAAAATTGTAGAAAG
390 AGTATGGGCA-TTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAAAAAAATTGT-GAAAG
* *
15790 AAAACCTTTTCCTGCAACAGC
453 AAAACCTTTTCTTGCAACACC
* * *
15811 AAAGCATCAGTGTCATTTATCCGAATGAAGGGAATTTATTTTTGGCTCCTAATATT-AAGAAGAA
1 AAAGCATCAGTGTCATTTATCCTAATGAAGGGAATGTATTTTTGGCTCCCAATATTGAA-AAGAA
* * *
15875 TAGAGTCTGTTACGAGAATCAAAGCTTGCCTTATTTAAGCGATGAACTTTGCTTTTATGAAAAAT
65 TGGAGTCTGTTACGAGAATCAAAGCTTGCCTTATTTAAGGGATGAACTTTGATTTTATGAAAAAT
* * * * * * *
15940 AGGGCAAATAAAATATTTCCTTGTAGAGGAAAATCATAAATATCATTTATTCTAATGAGGATAAT
130 AGGGCAAATAAAAGATTTCCTTGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * *
16005 GTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCATTCTTAGAATCCATGTTTGTCTTATTT
195 GTGTTTATAGTGACTAATCATAAAATGAATGAAGATCATTCTTAGAATCAATGTTTATCTCATTT
* **
16070 GAGACATGAA-TTCAGACTTTACAAAATTTGATGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCA
260 GAGACACGAACTT-AGACTTTACAAAATTTGGGGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCA
* * * * *
16134 TTAATATCGTGTATCCTTACAAGAAGACTGTGCTTATCGG-GCCGAATCTTGAAATAAATGGGGA
324 TCAATATCGTGTATCCTTACGAGAAGACTATGCTTAT-GGTGCCTAATCTTGAAATGAATGGGGA
*
16198 TTAGTATGGGCATTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTACAAAAAACTGTGTAA
388 TTAGTATGGGCATTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA-AAAAAATTGTG-AA
16263 AGAAAACCTTTTCTTGCAACACC
451 AGAAAACCTTTTCTTGCAACACC
* * * * * * *
16286 AAGGCATCAATGTCATTTATCATAATGAAGGGGATGCATTTTTGGCTCCCAATGTTGAAAAGAGT
1 AAAGCATCAGTGTCATTTATCCTAATGAAGGGAATGTATTTTTGGCTCCCAATATTGAAAAGAAT
* * * * * * *
16351 GGAGTCTATTATGAGAATCAATGCTTGCCTCATTTAAGGGATGAACATTGATTTTAAGGAAAATA
66 GGAGTCTGTTACGAGAATCAAAGCTTGCCTTATTTAAGGGATGAACTTTGATTTTATGAAAAATA
* * * * *
16416 GGGAAAAGAAAAGATTTTCATGCAAAATAAAATCATCAATATCATTTATCCTAAT-----G-A--
131 GGGCAAATAAAAGATTTCCTTGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* *** * *
16473 -----ATAGTGCCTAATTGCAAAATAAATGAAGATCATTATTAGAATCAATGTTTATCTCATTTG
196 TGTTTATAGTGACTAATCATAAAATGAATGAAGATCATTCTTAGAATCAATGTTTATCTCATTTG
** * *
16533 AGGTACGAACTTAGACTTCACAACAA-TTGGGGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCAT
261 AGACACGAACTTAGACTTTACAA-AATTTGGGGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCAT
* *
16597 CAATATCGTGTATCCTTATGAGAAGACTATGCTTATGGTGCCTAATCTTAAAATGAATGGGGATT
325 CAATATCGTGTATCCTTACGAGAAGACTATGCTTATGGTGCCTAATCTTGAAATGAATGGGGATT
* ** *
16662 AGTATGGGCATTATGTTTGTCTTATTTAAGAGACAAACTTTGGTTCTATAAAATTTTATGGAAAG
390 AGTATGGGCATTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA-AAAAAATTGT-GAAAG
16727 AAAACCTTTTCTTGCAACACC
453 AAAACCTTTTCTTGCAACACC
16748 AAAGCATCAGTGTCATTTATCCTAATGAAGGGAATGTATTTTTGGCTCCCAATATTGAAAAGAAT
1 AAAGCATCAGTGTCATTTATCCTAATGAAGGGAATGTATTTTTGGCTCCCAATATTGAAAAGAAT
* *
16813 -GATGTTTGTTACGACAATCAAAGCTTGCCTTATTTAAGGGATGAACTTTGATTTTATGAAAAAT
66 GGA-GTCTGTTACGAGAATCAAAGCTTGCCTTATTTAAGGGATGAACTTTGATTTTATGAAAAAT
* * *
16877 ACGGCAAATAAAAGATTTCCTTGCAAAAGAAAATCATCAATATCATTTATTCTAATGAGAAGAAT
130 AGGGCAAATAAAAGATTTCCTTGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * *
16942 GTGTTTATAGTGACTAATCATAAAATGAGTGAAGATCTTTCCTAGAATCCATGTTTATCTCATTT
195 GTGTTTATAGTGACTAATCATAAAATGAATGAAGATCATTCTTAGAATCAATGTTTATCTCATTT
** * *
17007 GAGACACGAGTTTAGACTTTACAAAATTTGGTGGGAAGAAAGCCTTTCTCGCGAAACCAAAGCAT
260 GAGACACGAACTTAGACTTTACAAAATTTGGGGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCAT
* * * * * * *
17072 CAATATTGTATATCCTAATGAGAAGACTACG-TTTTGGTGCCTAATCTTGAAACGAATGGGGATT
325 CAATATCGTGTATCCTTACGAGAAGACTATGCTTATGGTGCCTAATCTTGAAATGAATGGGGATT
17136 AGTATGGG
390 AGTATGGG
17144 TATTCATGAT
Statistics
Matches: 1149, Mismatches: 152, Indels: 59
0.84 0.11 0.04
Matches are distributed among these distances:
461 4 0.00
462 395 0.34
463 5 0.00
467 1 0.00
468 3 0.00
469 153 0.13
470 51 0.04
472 3 0.00
473 134 0.12
474 86 0.07
475 312 0.27
476 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (473 bp):
AAAGCATCAGTGTCATTTATCCTAATGAAGGGAATGTATTTTTGGCTCCCAATATTGAAAAGAAT
GGAGTCTGTTACGAGAATCAAAGCTTGCCTTATTTAAGGGATGAACTTTGATTTTATGAAAAATA
GGGCAAATAAAAGATTTCCTTGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
TGTTTATAGTGACTAATCATAAAATGAATGAAGATCATTCTTAGAATCAATGTTTATCTCATTTG
AGACACGAACTTAGACTTTACAAAATTTGGGGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATC
AATATCGTGTATCCTTACGAGAAGACTATGCTTATGGTGCCTAATCTTGAAATGAATGGGGATTA
GTATGGGCATTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAAAAAAATTGTGAAAGAAA
ACCTTTTCTTGCAACACC
Found at i:18240 original size:476 final size:472
Alignment explanation
Indices: 17149--18322 Score: 1461
Period size: 476 Copynumber: 2.5 Consensus size: 472
17139 ATGGGTATTC
* * * * *
17149 ATGATCTTTGATTTTATGAAAAATAGGGCAAATAAAAGATTTCCTTGCAAAAAAAAATCATCAAT
1 ATGAACTTTGATTTTAAGGAAAATAGGGCAAATAAAAGA-TTCCATGCAAAAGAAAATCATCAAT
* * *
17214 ATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGACTAATCATAATAATATGAGTGAATATCA
65 ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGACTAATCA-AA-AA-ATGAATGAAGATCA
* * *
17279 TTCCTAGAATCCATGTTTGTCTCATTTGAGACACAAATTTAGACTTTACAAAATTTGAT--GAAG
127 TTCCTAGAATCCATGTTTGTCTCATTTGAGAGAAAAATTTAGACTTTACAAAATTTGGTGGGAAG
** * * *
17342 AAAGCCTTTCTTGCGAAACCAAACCGTCAATATCGTGTATCCTAATGACTAGACTATGTTTATGG
192 AAAGCCTTTCTTGCGAAACCAAAGTGTCAATATCATATATCCTAATGACAAGACTATGTTTATGG
* * *
17407 TACCTAATCTTGACACGAGTGGGAATTAGAATGGGCATTCTTGTTTGTCTTATTTAAGAGACAAA
257 TACCTAATCTTGAAACGAATGGGAATTAGAATGGGCATTCATGTTTGTCTTATTTAAGAGACAAA
* * ** * **
17472 CTTTGATTCTATAAAAAATTATGGAAGGAAAACCTTTTCTTGTAGTTCCAAAGCATCAATCATTA
322 CTGTGATTCTACAAAAAACAATGGAAAGAAAACCTTTTCTTGTAGCACCAAAGCATCAATCATTA
* * * **
17537 TCCTATTGAAGGAAAAGTATTTTTGGCTCTCAATATTTAAAAGAATGGAGTCTGTTAAGAGAATC
387 TCCAAATGAAGGAAAAGTATTTTTGGCTCTCAATATTGAAAAGAATGGAAACTGTTAAGAGAATC
*
17602 AAAGCTTGCCTACTCTAAGGG
452 AAAGCTTGCCTACTATAAGGG
*
17623 ATGAACTTTGATTTT-ATGAAAACTAGGGCAAATAAAAGATTACCATGCAAAAGAAAATCATCAA
1 ATGAACTTTGATTTTAAGGAAAA-TAGGGCAAATAAAAGATT-CCATGCAAAAGAAAATCATCAA
* *
17687 TATCATTTATCCTAGTGAGGAGAATGTGTTTATAGTGACTAATCATAAAATGAATGAAGATCATT
64 TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGACTAATCAAAAAATGAATGAAGATCATT
* ** *
17752 CCTAGAATCCATGTTTGCCTCATTTGAGAGATGAATTTAGACTTTACGAAATTTGGTGGGAAGAA
129 CCTAGAATCCATGTTTGTCTCATTTGAGAGAAAAATTTAGACTTTACAAAATTTGGTGGGAAGAA
* *
17817 AGCCTTTCTTGCGAAACCAAAGTGTCAATATCATATATCCTAATGAGAAGACTATGTTTATGGTG
194 AGCCTTTCTTGCGAAACCAAAGTGTCAATATCATATATCCTAATGACAAGACTATGTTTATGGTA
* *
17882 CCTAATCTTGAAACGAATAGGG-ATTAGTATGGGTATTCATGTTTGTCTTATTTAAGAGACAAAC
259 CCTAATCTTGAAACGAAT-GGGAATTAGAATGGGCATTCATGTTTGTCTTATTTAAGAGACAAAC
* * *
17946 TGTGATTTTACCAAAAACAATGGAAAGAAAAGCTTTTC-T-TACGACACCAAAGCATCAATTTCA
323 TGTGATTCTACAAAAAACAATGGAAAGAAAACCTTTTCTTGTA-G-CACCAAAGCATCAA--TCA
* * * *
18009 TGTATCCAAATGAAGGGAATGTATTTTTGGTTCTCAATATTGAAAAGAATGGAAACTGTTATG-G
384 T-TATCCAAATGAAGGAAAAGTATTTTTGGCTCTCAATATTGAAAAGAATGGAAACTGTTAAGAG
* *
18073 CAATCAATGCTTGCCTTA-TATAGGGG
448 -AATCAAAGCTTGCC-TACTATAAGGG
* * * * * *
18099 ATGAACTTTTATTTTAAGGAAAATAGGGGAAAGAAAAGAGTTCCATGCAAAAGAAAATGATGAGT
1 ATGAACTTTGATTTTAAGGAAAATAGGGCAAATAAAAGA-TTCCATGCAAAAGAAAATCATCAAT
* * * * *
18164 ATCATTTACCCTAATTAGGAGAATTTGTTTATAGTGCCTAATCACAAAATGAATGATA-ATCAAT
65 ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGACTAATCAAAAAATGAATGA-AGATC-AT
* * * * * * * *
18228 ACC-ATAATCCATGTTTGTCTTATGTGAG-GAACAACTTAGACTATACAAAAATTGGTGGGAAGA
128 TCCTAGAATCCATGTTTGTCTCATTTGAGAGAAAAATTTAGACTTTACAAAATTTGGTGGGAAGA
* *
18291 AAGCCTTTGTTGCGAAACTAAAGTGTCAATAT
193 AAGCCTTTCTTGCGAAACCAAAGTGTCAATAT
18323 TGCCCGTTCG
Statistics
Matches: 607, Mismatches: 77, Indels: 31
0.85 0.11 0.04
Matches are distributed among these distances:
471 67 0.11
472 4 0.01
473 168 0.28
474 96 0.16
475 64 0.11
476 193 0.32
477 15 0.02
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (472 bp):
ATGAACTTTGATTTTAAGGAAAATAGGGCAAATAAAAGATTCCATGCAAAAGAAAATCATCAATA
TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGACTAATCAAAAAATGAATGAAGATCATTCC
TAGAATCCATGTTTGTCTCATTTGAGAGAAAAATTTAGACTTTACAAAATTTGGTGGGAAGAAAG
CCTTTCTTGCGAAACCAAAGTGTCAATATCATATATCCTAATGACAAGACTATGTTTATGGTACC
TAATCTTGAAACGAATGGGAATTAGAATGGGCATTCATGTTTGTCTTATTTAAGAGACAAACTGT
GATTCTACAAAAAACAATGGAAAGAAAACCTTTTCTTGTAGCACCAAAGCATCAATCATTATCCA
AATGAAGGAAAAGTATTTTTGGCTCTCAATATTGAAAAGAATGGAAACTGTTAAGAGAATCAAAG
CTTGCCTACTATAAGGG
Found at i:18650 original size:27 final size:27
Alignment explanation
Indices: 18617--18687 Score: 124
Period size: 27 Copynumber: 2.6 Consensus size: 27
18607 ATTGAAAAAC
18617 GGGGTTGGAGTATCCCCTTGGAGAAAT
1 GGGGTTGGAGTATCCCCTTGGAGAAAT
18644 GGGGTTGGAGTATCCCCTTGGAGAAAT
1 GGGGTTGGAGTATCCCCTTGGAGAAAT
* *
18671 GGGGCTAGAGTATCCCC
1 GGGGTTGGAGTATCCCC
18688 GACAATGATA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.21, C:0.18, G:0.37, T:0.24
Consensus pattern (27 bp):
GGGGTTGGAGTATCCCCTTGGAGAAAT
Found at i:19994 original size:28 final size:28
Alignment explanation
Indices: 19961--20480 Score: 705
Period size: 28 Copynumber: 18.6 Consensus size: 28
19951 AGCATGCAAA
19961 TGACTTGTGGGCTTTGAAAGGATGCCAC
1 TGACTTGTGGGCTTTGAAAGGATGCCAC
* *
19989 TGACTTGTGGTCTTTGAAAGGGTGCCAC
1 TGACTTGTGGGCTTTGAAAGGATGCCAC
* *
20017 TGACTTGTGGGCTTTGAAAGGTTGCCAT
1 TGACTTGTGGGCTTTGAAAGGATGCCAC
* * * *
20045 TGGCTTGTGGGCTTTGAAAGGGTGCTAA
1 TGACTTGTGGGCTTTGAAAGGATGCCAC
* *
20073 TAACTTGTGGGCTTTGAAGGGATGCCAC
1 TGACTTGTGGGCTTTGAAAGGATGCCAC
* *
20101 TGACTTATGGGCTTTGAAAGGGTTGCCAC
1 TGACTTGTGGGCTTTGAAA-GGATGCCAC
*
20130 TGACTCGTGGGCTTTGAAAGGATGCCAC
1 TGACTTGTGGGCTTTGAAAGGATGCCAC
*
20158 TGACTTGTGGGCTTTGAAAGGATGCCGC
1 TGACTTGTGGGCTTTGAAAGGATGCCAC
*
20186 TGACTTGTGGGCTTTGAAAGGGTGCCAC
1 TGACTTGTGGGCTTTGAAAGGATGCCAC
20214 TGACTTGTGGGCTTTG---GG-TGCCAC
1 TGACTTGTGGGCTTTGAAAGGATGCCAC
*
20238 TAACTTGCGTGGGCTTTGAAAGGATGCCAC
1 TGACTT--GTGGGCTTTGAAAGGATGCCAC
*
20268 TGACTTGTGGGCTTTGAAAGGGTGCCAC
1 TGACTTGTGGGCTTTGAAAGGATGCCAC
20296 TGACTTGTGGGCTTTG---GG-TGCCAC
1 TGACTTGTGGGCTTTGAAAGGATGCCAC
*
20320 TAACTTGCGTGGGCTTTGAAAGGATGCCAC
1 TGACTT--GTGGGCTTTGAAAGGATGCCAC
*
20350 TGACTTGTGGGCTTTGAAAGGGTGCCAC
1 TGACTTGTGGGCTTTGAAAGGATGCCAC
* *
20378 TGACTTATGGGCTTTGAAAGGGTGCCAC
1 TGACTTGTGGGCTTTGAAAGGATGCCAC
*
20406 TAACTTGTGGGCTTTGAAAGGATGCCAC
1 TGACTTGTGGGCTTTGAAAGGATGCCAC
* * *
20434 TAACTTGTGGGCTTTGAAAAGAGTGTCAC
1 TGACTTGTGGGCTTTGAAAGGA-TGCCAC
20463 TGACTTGTGGGCTTTGAA
1 TGACTTGTGGGCTTTGAA
20481 GAGATGAACG
Statistics
Matches: 439, Mismatches: 39, Indels: 27
0.87 0.08 0.05
Matches are distributed among these distances:
24 22 0.05
25 4 0.01
26 20 0.05
28 320 0.73
29 51 0.12
30 22 0.05
ACGTcount: A:0.19, C:0.17, G:0.33, T:0.30
Consensus pattern (28 bp):
TGACTTGTGGGCTTTGAAAGGATGCCAC
Found at i:20271 original size:82 final size:80
Alignment explanation
Indices: 19961--20478 Score: 685
Period size: 82 Copynumber: 6.2 Consensus size: 80
19951 AGCATGCAAA
* * *
19961 TGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGTCTTTGAAAGGGTGCCACTGACTTGTG
1 TGACTTGTGGGCTTTG---GG-TGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTG
* *
20026 GGCTTTGAAAGGTTGCCAT
62 GGCTTTGAAAGGGTGCCAC
* * * * *
20045 TGGCTTGTGGGCTTTGAAAGGGTGCTAATAACTTGTGGGCTTTGAAGGGATGCCACTGACTTATG
1 TGACTTGTGGGCTTT----GGGTGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTG
20110 GGCTTTGAAAGGGTTGCCAC
62 GGCTTTGAAAGGG-TGCCAC
* * *
20130 TGACTCGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCGCTGACTTGTG
1 TGACTTGTGGGCTTTG---GG-TGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTG
20195 GGCTTTGAAAGGGTGCCAC
62 GGCTTTGAAAGGGTGCCAC
20214 TGACTTGTGGGCTTTGGGTGCCACTAACTTGCGTGGGCTTTGAAAGGATGCCACTGACTTGTGGG
1 TGACTTGTGGGCTTTGGGTGCCACTAACTT--GTGGGCTTTGAAAGGATGCCACTGACTTGTGGG
20279 CTTTGAAAGGGTGCCAC
64 CTTTGAAAGGGTGCCAC
20296 TGACTTGTGGGCTTTGGGTGCCACTAACTTGCGTGGGCTTTGAAAGGATGCCACTGACTTGTGGG
1 TGACTTGTGGGCTTTGGGTGCCACTAACTT--GTGGGCTTTGAAAGGATGCCACTGACTTGTGGG
20361 CTTTGAAAGGGTGCCAC
64 CTTTGAAAGGGTGCCAC
* *
20378 TGACTTATGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTG
1 TGACTTGTGGGCTTT----GGGTGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTG
* *
20443 GGCTTTGAAAAGAGTGTCAC
62 GGCTTTG-AAAGGGTGCCAC
20463 TGACTTGTGGGCTTTG
1 TGACTTGTGGGCTTTG
20479 AAGAGATGAA
Statistics
Matches: 392, Mismatches: 26, Indels: 35
0.87 0.06 0.08
Matches are distributed among these distances:
80 11 0.03
81 4 0.01
82 145 0.37
84 122 0.31
85 94 0.24
86 15 0.04
88 1 0.00
ACGTcount: A:0.19, C:0.18, G:0.33, T:0.30
Consensus pattern (80 bp):
TGACTTGTGGGCTTTGGGTGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
TTGAAAGGGTGCCAC
Found at i:23799 original size:54 final size:54
Alignment explanation
Indices: 23735--23843 Score: 218
Period size: 54 Copynumber: 2.0 Consensus size: 54
23725 CTCACATAGA
23735 TACTTGATAGGATCAAGCCTTGCAATTAGCCATGTGCTATGATACAACATGTAC
1 TACTTGATAGGATCAAGCCTTGCAATTAGCCATGTGCTATGATACAACATGTAC
23789 TACTTGATAGGATCAAGCCTTGCAATTAGCCATGTGCTATGATACAACATGTAC
1 TACTTGATAGGATCAAGCCTTGCAATTAGCCATGTGCTATGATACAACATGTAC
23843 T
1 T
23844 GCCTGAGTCT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.30
Consensus pattern (54 bp):
TACTTGATAGGATCAAGCCTTGCAATTAGCCATGTGCTATGATACAACATGTAC
Found at i:29003 original size:9 final size:9
Alignment explanation
Indices: 28991--29051 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
28981 CTTTCTCTAT
28991 TATCTCTCC
1 TATCTCTCC
29000 TATCTCTCC
1 TATCTCTCC
* *
29009 T-CCTAT-C
1 TATCTCTCC
*
29016 -ATCCCTCC
1 TATCTCTCC
**
29024 TATCTCAAC
1 TATCTCTCC
29033 TATCTCTCC
1 TATCTCTCC
29042 TATCTCTCC
1 TATCTCTCC
29051 T
1 T
29052 CCTATCATCC
Statistics
Matches: 39, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
7 3 0.08
8 4 0.10
9 32 0.82
ACGTcount: A:0.15, C:0.44, G:0.00, T:0.41
Consensus pattern (9 bp):
TATCTCTCC
Found at i:29011 original size:12 final size:12
Alignment explanation
Indices: 28996--29072 Score: 68
Period size: 12 Copynumber: 5.9 Consensus size: 12
28986 TCTATTATCT
28996 CTCCTATCTCTC
1 CTCCTATCTCTC
29008 CTCCTATCATC-C
1 CTCCTATC-TCTC
29020 CTCCTATCTCAACTATC
1 CTCCTATCT---C--TC
29037 TCTCCTATCTCTC
1 -CTCCTATCTCTC
29050 CTCCTATCATC-C
1 CTCCTATC-TCTC
29062 CTCCTATCTCT
1 CTCCTATCTCT
29073 TCTTTCTCTT
Statistics
Matches: 55, Mismatches: 0, Indels: 20
0.73 0.00 0.27
Matches are distributed among these distances:
11 3 0.05
12 34 0.62
13 6 0.11
14 1 0.02
15 1 0.02
17 1 0.02
18 9 0.16
ACGTcount: A:0.14, C:0.47, G:0.00, T:0.39
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:29021 original size:42 final size:42
Alignment explanation
Indices: 28972--29081 Score: 175
Period size: 42 Copynumber: 2.6 Consensus size: 42
28962 CCTTCTCCCG
* *
28972 TCATCCCTCCTTTCTCTATTATCTCTCCTATCTCTCCTCCTA
1 TCATCCCTCCTATCTCTACTATCTCTCCTATCTCTCCTCCTA
*
29014 TCATCCCTCCTATCTCAACTATCTCTCCTATCTCTCCTCCTA
1 TCATCCCTCCTATCTCTACTATCTCTCCTATCTCTCCTCCTA
* *
29056 TCATCCCTCCTATCTCTTCTTTCTCT
1 TCATCCCTCCTATCTCTACTATCTCT
29082 TTGAGGGCTA
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.13, C:0.44, G:0.00, T:0.44
Consensus pattern (42 bp):
TCATCCCTCCTATCTCTACTATCTCTCCTATCTCTCCTCCTA
Found at i:30774 original size:15 final size:15
Alignment explanation
Indices: 30754--30794 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
30744 AGGACGACCA
30754 AGCACTGGTGGTACC
1 AGCACTGGTGGTACC
*
30769 AGCACTGATGGTACC
1 AGCACTGGTGGTACC
*
30784 AACACTGGTGG
1 AGCACTGGTGG
30795 GTTTGACAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.24, C:0.24, G:0.32, T:0.20
Consensus pattern (15 bp):
AGCACTGGTGGTACC
Found at i:41584 original size:19 final size:19
Alignment explanation
Indices: 41558--41596 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
41548 ATTTAATGAG
*
41558 ATGCTG-AACATATTAAAA
1 ATGCTGAAACATAATAAAA
41576 ATGCATGAAACATAATAAAA
1 ATGC-TGAAACATAATAAAA
41596 A
1 A
41597 AATGCATGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 2 0.11
20 12 0.67
ACGTcount: A:0.56, C:0.10, G:0.10, T:0.23
Consensus pattern (19 bp):
ATGCTGAAACATAATAAAA
Found at i:42530 original size:20 final size:20
Alignment explanation
Indices: 42504--42558 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
42494 AAAAAGACAG
* *
42504 AATGTATCGATACCTTCATA
1 AATGTATCGATACATTCAAA
* *
42524 CATGTATCGATACATTGAAA
1 AATGTATCGATACATTCAAA
42544 AATGTATCGATACAT
1 AATGTATCGATACAT
42559 CTGGGTACTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (20 bp):
AATGTATCGATACATTCAAA
Found at i:49631 original size:33 final size:33
Alignment explanation
Indices: 49566--49636 Score: 88
Period size: 33 Copynumber: 2.2 Consensus size: 33
49556 TTCTTCTCTC
* * * * *
49566 CTCCTCCTGTCATCCCTCCTCTGTCTATTATCT
1 CTCCTCCTATCATCCCTCATATCTCTACTATCT
*
49599 CTCCTCCTATCATCCCTTATATCTCTACTATCT
1 CTCCTCCTATCATCCCTCATATCTCTACTATCT
49632 CTCCT
1 CTCCT
49637 ATCTCTCCTC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.13, C:0.42, G:0.03, T:0.42
Consensus pattern (33 bp):
CTCCTCCTATCATCCCTCATATCTCTACTATCT
Found at i:49641 original size:42 final size:42
Alignment explanation
Indices: 49594--49675 Score: 119
Period size: 42 Copynumber: 2.0 Consensus size: 42
49584 CTCTGTCTAT
*
49594 TATCTCTCCTCCTATCATCCCTTATATCTCTACTATCTCTCC
1 TATCTCTCCTCCTATCATCCCTCATATCTCTACTATCTCTCC
* * * *
49636 TATCTCTCCTCCTTTCATCCCTCCTATCTCTTCTTTCTCT
1 TATCTCTCCTCCTATCATCCCTCATATCTCTACTATCTCT
49676 TTAAGGGCTA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.12, C:0.41, G:0.00, T:0.46
Consensus pattern (42 bp):
TATCTCTCCTCCTATCATCCCTCATATCTCTACTATCTCTCC
Found at i:50430 original size:17 final size:19
Alignment explanation
Indices: 50397--50434 Score: 62
Period size: 17 Copynumber: 2.1 Consensus size: 19
50387 CAAAAGCTGG
50397 TTTTTCCTCTCTTTTTGTA
1 TTTTTCCTCTCTTTTTGTA
50416 TTTTTCCT-T-TTTTTGTA
1 TTTTTCCTCTCTTTTTGTA
50433 TT
1 TT
50435 CTTGGAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 10 0.53
18 1 0.05
19 8 0.42
ACGTcount: A:0.05, C:0.16, G:0.05, T:0.74
Consensus pattern (19 bp):
TTTTTCCTCTCTTTTTGTA
Found at i:53066 original size:476 final size:474
Alignment explanation
Indices: 51712--57859 Score: 7037
Period size: 476 Copynumber: 12.9 Consensus size: 474
51702 GAAGACTATG
*
51712 CTTGAAACA-AATGAGGATTAGTATGGGCATT-ATGTTTGTCTTATTTAAGAG--AAACTTTGAT
1 CTTGAAA-AGAATGGGGATTAGTAT-GGCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
** * * * * *
51773 TCTATAAAAAATTATGGAAAGAAAACCTTTTCTTGCAACACCAAGGCATCGATATCATTTA-CCA
64 TCTATAAAAAATGGTGGAAAGAAAGCCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCC-
* * *
51837 TAATGAAGGGAATGTATTTTTGGCTCCCAATGTTGAAAAGAATGGA-ATCTGTTATGAGAATCAA
128 TAATGAAGGGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGA-CTGTTATGAGAATCAA
* * * * * *
51901 TGCTTGCCTTATTTAAGGGATAAACATGGATTTTAAGGAAAATCGAGCAAAAAAAAAAGATTTCC
192 TGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGC--AAATAAAAGATTTCC
* *
51966 ACT-CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAAAATGTGTTTATAGCGCCTAATC
255 A-TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
** * * * * * * *
52030 GCAAAATGAATGAAGATCATTACAAGAATCAATGTTTATCTCTTTTGAGGCACGAACTTAGACTT
319 ATAAAATGAATGAAGATCATTCCTAGAATCCATGTTTGTCTCATTTGA-GAACAAACTTAGACTT
* * * *
52095 TACAAAAATTTTGGGGGGCTGAAGAAAGCCTTTCTTGTGAAACCAAAGTATCAATATGGTGTATC
383 TAC-AAAA-TTT-GGTGG--GAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATC
* * *
52160 CTTATAAGAAGACTATGCTTATCCG-GCCTACT
443 CTTATGAGAAGACTATGCTTAT-GGTGCCTAAT
* * *
52192 CTTGAAAAAAAGGGGGTTTAGTATGGGCATT-ATGTTTGTCTTATTTAAGAGACAAACTTTGATT
1 CTTGAAAAGAATGGGGATTAGTAT-GGCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
** * * * * *
52256 CTATAAAAAATTATGGAAAGAAAACCTTTTCTTGCAATACCAAGGCATCAATGTCATTTATCATA
65 CTATAAAAAATGGTGGAAAGAAAGCCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTA
* * * * * * *
52321 GTGAAGGGAATGTATTTTTGGATCCCAAATATTGAAAAGAATGAAGTCTGTTACGAGAATCAAAG
130 ATGAAGGGAATGTGTTTTTGGTTCCC-AATATTGAAAAGAATGGAGACTGTTATGAGAATCAATG
* * * * *
52386 CTTGCCTTATTTAAGGGATGAACTCTGATTTTATGAAAAATAGGGCAAATAAAAGATTTTCTTGC
194 CTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAATAAAAGATTTCCATGC
* *
52451 AAAA-AGAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGACTAATCATAAA
259 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATAAA
* * * *
52515 ATGAATGAAGATC-TTCCCTGGAATCCATGTTTGCCACATTTGAGACACAAATTTAGACTTTACA
324 ATGAATGAAGATCATT-CCTAGAATCCATGTTTGTCTCATTTGAGA-ACAAACTTAGACTTTACA
* * * *
52579 AAATTTGATGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTTATGAGT
387 AAATTTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGA
52644 AGACTATGCTTATGGTGCCTAAT
452 AGACTATGCTTATGGTGCCTAAT
** * * * *
52667 CTTGAAATTAAGGGGGATTAGTATGGGCATTCTTGTTTTTCTTATTTAAGAGAAAAACTTTGATT
1 CTTGAAAAGAATGGGGATTAGTAT-GGCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * * * * *
52732 CTATAAAAAATTGTGGAAAGAAAGCCTTTTCTTGCAAGACCAAAGAATCAGTGCCAT-TCATCCC
65 CTATAAAAAATGGTGGAAAGAAAGCCTTTTCTTGCAACACCAAAGCATCAATGTCATGT-ATCCT
* * * ** *** **
52796 AATGAAGGGAATATATTTTTGGCTCCCAATATTGAAAAGAATAAAGTGGGTTATGAGAATCAAAA
129 AATGAAGGGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTGTTATGAGAATCAATG
* * * *
52861 CTTGCCTTATTTAAGGGATGAACTTTCATTTTATGAAAAATAGGGCAAATAAAAGATTTCCTTGC
194 CTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAATAAAAGATTTCCATGC
* * *
52926 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGATAATGTGTTTATAGTGACTAATCGTAAA
259 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATAAA
* *
52991 ATGAATGAAGATCATTCCTAGAATCCATGTTTGTCTTATTTGTAGAACAAACTTAGGCTTTACAA
324 ATGAATGAAGATCATTCCTAGAATCCATGTTTGTCTCATTTG-AGAACAAACTTAGACTTTACAA
* * * *
53056 AAGTTGATGGGAAGAAAGCCTTTCTTGCGAAACCAATGCATCAATATCGTGTATCCTAATGAGAA
388 AATTTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAA
**
53121 GACTATATTTATGGTGCCTAAT
453 GACTATGCTTATGGTGCCTAAT
* * *
53143 CTTGAAACA-AATGGGGATTAGTACGGGTATTCATGTTTATCTTATTTAAGAGACAAACTTTGAT
1 CTTGAAA-AGAATGGGGATTAGTA-TGGCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * * ** * * *
53207 TTTGTCAAAAATGGTTGAAAGAAAAGCAATAT-TTGCGACACCAAAGCATTAATGTCATGTATCC
64 TCTATAAAAAATGGTGGAAAG-AAAGCCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCC
* * * * * *
53271 TAATGAATGGAATTTGTTTTTGGTTCCTAGTATTGAAAAGAATGGAGACTATTACGAGAATCAAT
128 TAATGAAGGGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTGTTATGAGAATCAAT
* ** * *
53336 GCTTGCCTTATTTAAGGGATGAACTTTAATTTTAACAAAAATAGGGCAAAGAAAAGATTTCCAAG
193 GCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAATAAAAGATTTCCATG
* **
53401 CGAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCCCAA
258 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATAA
* * * * * * * *
53466 AACGATTGAAGATCATTACTAGAATCAATGTTTATCTCATTTAAGGCACGAACTTAGACTTTACA
323 AATGAATGAAGATCATTCCTAGAATCCATGTTTGTCTCATTTGA-GAACAAACTTAGACTTTACA
* * * *
53531 AAAATTGGGGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATAAGA
387 AAATTTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGA
* *
53596 AGACTATGTTTATGGTGTCTAAT
452 AGACTATGCTTATGGTGCCTAAT
* * * * * * *
53619 CCTAAAAAGAATGGGGATTAGTTTGACTATTCATGTTAGTCTTACTTAAGAGACAAACTTAGATT
1 CTTGAAAAGAATGGGGATTAGTATGGC-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
** * * *
53684 CTATAAAAAATAATGGAAGGAAAACCTTTTCTTGCAACATCAAAGCATCAATGTCATGTATCCTA
65 CTATAAAAAATGGTGGAAAGAAAGCCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTA
* * * *
53749 ATGAAGGGAATGTGTTTTTGGATCCTAATATTGTAAAGAATGGAGACTATTATGAGAATCAAAT-
130 ATGAAGGGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTGTTATGAGAATC-AATG
* * *
53813 CTTCCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATACGGCAAATAAAAGATTT-CATGC
194 CTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAATAAAAGATTTCCATGC
* * *
53877 AATAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCAAATCAAAA
259 AA-AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATAA
* * * *
53942 AATGAATG-A-ATGA----T--AATCCATGTTTGTCTTATTTGAGGCACAAACTTATACTTTACA
323 AATGAATGAAGATCATTCCTAGAATCCATGTTTGTCTCATTTGA-GAACAAACTTAGACTTTACA
* * *
53999 AAATTTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATTGTGTATCCTTATGAGA
387 AAATTTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGA
* *
54064 AGACTAAGTTTATGGTGCCTAAT
452 AGACTATGCTTATGGTGCCTAAT
* * * *
54087 CCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATT
1 CTTGAAAAGAATGGGGATTAGTATGGC-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * * * * *
54152 CTGTCAAAAATAGG-GGAAATAAAGGCATTTCTTGCAACACCAAAGCATCAATGTCATGTATCTT
65 CTATAAAAAAT-GGTGGAAAGAAAGCCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCT
* *
54216 AATGATGGGAATGTGTTTTTGGTTCCCAATATTGAAAA-AATGGAGACTGTTACGAGAATCAATG
129 AATGAAGGGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTGTTATGAGAATCAATG
* * **
54280 CTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAAGGCAAGGAAAAGATTTCCATGC
194 CTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAATAAAAGATTTCCATGC
* * * * *
54345 AAAAGAAAATCATCAATATCGTTTATCCTAATAAGGAGAATGTGCTTATAGTGCCTACTCGTAAA
259 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATAAA
* * * * *
54410 ATGAATGAAGATCATTCCTAGAATTCATGTATGTCTCATTTAAGACACAAATTTGGACTTTACAA
324 ATGAATGAAGATCATTCCTAGAATCCATGTTTGTCTCATTTGAGA-ACAAACTTAGACTTTACAA
* * * *
54475 AATTTGGTGGGAAGAAAGCCATTCTTGCGAAACCAAAGCGTCAATATTGTGTATCCTTACGAGAA
388 AATTTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAA
*
54540 GACAATGCTTATGGTGCCTAAT
453 GACTATGCTTATGGTGCCTAAT
* * * * * *
54562 CTTGAAATGGATGGGGATTAGTATGGGTATTCATGCTTGTCTTATTTATGAGACAAACTTAGATT
1 CTTGAAAAGAATGGGGATTAGTAT-GGCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * * ** * * *
54627 CTATCAAAAATGGTTGAAAGGAATG-CTTTTCTTGCGGCAACAAAGCTTCAATGTCTTGTATCCT
65 CTATAAAAAATGGTGGAAA-GAAAGCCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCT
* *
54691 AATGAAGGGAATGTGCTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCAATG
129 AATGAAGGGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTGTTATGAGAATCAATG
* * * **
54756 CTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCAACC
194 CTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAATAAAAGATTTCCATGC
* * * * * *
54821 AAAAGAAAATTATCAATATCATCTATCCTAATAAGAAGAATGTGCTTATAGTTCCTAATCATAAA
259 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATAAA
* * *
54886 ATGAATGAAGATTATTCATAGAATCCATGTATGTCTCATTTGAG-ACATGAACTTAGACTTTACA
324 ATGAATGAAGATCATTCCTAGAATCCATGTTTGTCTCATTTGAGAACA--AACTTAGACTTTACA
* * * * *
54950 AAATTTGTTGGGAAGAAGGCCATTCTTGCCAAACCAAAGCGTCAATATCGTGTATCCTTATGAGA
387 AAATTTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGA
* *
55015 AGATTATGTTTATGGTGCCTAAT
452 AGACTATGCTTATGGTGCCTAAT
* * * * * * * *
55038 CCTGAAAAGAATGGGGATTAGTATGACTACTCATATTTATCTTATTTAAGAGACAGAGTTAGATT
1 CTTGAAAAGAATGGGGATTAGTATGGC-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * *
55103 CTATAAAAAATGGTGGAAAGAAAACCTTTTCTTGCCACATCAAAGCATCAATGTCATGTATCCTA
65 CTATAAAAAATGGTGGAAAGAAAGCCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTA
* * * * ** * *
55168 ATGAAGGGAATATGTTTTTGGCTCCCAATATTGAATAGAATAGAGTTTGCTATGAGAATCAAAGC
130 ATGAAGGGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTGTTATGAGAATCAATGC
* * * * *
55233 TTGCCTTATTTAGGGGATGAACTTTGATTTTATGGAAATTAAGGG-AAATAAAAGAATTCCACGC
195 TTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT-AGGGCAAATAAAAGATTTCCATGC
*
55297 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAGCATAAA
259 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATAAA
* * *
55362 ATGAATGAAGATCATTCCTAGAATCCATGTTTGTCTCATTTGGGACACGAACTTAAACTTTACGA
324 ATGAATGAAGATCATTCCTAGAATCCATGTTTGTCTCATTTGAGA-ACAAACTTAGACTTTAC-A
*
55427 AAA-TTGGTGGGAAGAAAGCCTTT-TTTC-ATAACCAAAGCATCAATATCGTGTATCCTTATGAG
387 AAATTTGGTGGGAAGAAAGCCTTTCTTGCGA-AACCAAAGCATCAATATCGTGTATCCTTATGAG
* *
55489 AAAACTATGCTTATGATGCCTAAT
451 AAGACTATGCTTATGGTGCCTAAT
* * * * *
55513 CCTGAAAAGAATAGGGATTAGTGTGACTATTCAT-TTTGTCTGT-TTTAAGAGGCAAACTTTGAT
1 CTTGAAAAGAATGGGGATTAGTATGGC-ATTCATGTTTGTCT-TATTTAAGAGACAAACTTTGAT
* * ** * * *
55576 TCTATCAAAAATGGTGGAAAGAAAAG-CATTTCTTGTGACACCAAAGAATCAATGTCATGCATCT
64 TCTATAAAAAATGGTGGAAAG-AAAGCCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCC
* ** * * *
55640 TAATGAAAGGAATGTGTTTTTGGTTCCCAATATTGGTAAGAATGGATAGTGTTACGAGAATCAAT
128 TAATGAAGGGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTGTTATGAGAATCAAT
* * * * *
55705 GCTTGTCTTATTTCAGGGATGAACATTGTTTTTAAGGAAAATAGGGCAAAGAAAAAGATTTCCAT
193 GCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA-TAAAAGATTTCCAT
* * * *
55770 GCAGAAGAAAATC-TACAATATCATTCATCCTAATGCA-GAGAATGTTTTTATAGTGCTTAAGT-
257 GCAAAAGAAAATCAT-CAATATCATTTATCCTAATG-AGGAGAATGTGTTTATAGTGCCTAA-TC
* * *
55832 ACAAAATGAATGAAGATCATTCCTAGAATCCATGTTTGTCTCATTTG-GGACAAGAACTTATACT
319 ATAAAATGAATGAAGATCATTCCTAGAATCCATGTTTGTCTCATTTGAGAAC-A-AACTTAGACT
* * * * * * * *
55896 TTACAAAAATTGGTTGGAAGAAAGGCTTTTTTGCGTAATCAAAGCGTCAATATTGTGTATCCTTA
382 TTACAAAATTTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTA
* *
55961 CGAGAAGACTATGCTTATGGTGCGTAAT
447 TGAGAAGACTATGCTTATGGTGCCTAAT
* * **
55989 CTTGAAACGAAT-GGGATTACTATGGGCATTCATGTTTGTCTTATTTAATCGACAAACTTTGATT
1 CTTGAAAAGAATGGGGATTAGTAT-GGCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * *
56053 CTATAAAAAATGGTGGAAAGAAAACCTTTTCTTGCAACATCAAAGCATCAATTTCATGTATCCTA
65 CTATAAAAAATGGTGGAAAGAAAGCCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTA
* * * *
56118 ATGAAGGGAATGTGTTTTTGGCTCCCAATATTGAATAA-AATGGAGTCTGGTATGAGAATCAAAG
130 ATGAAGGGAATGTGTTTTTGGTTCCCAATATTGAA-AAGAATGGAGACTGTTATGAGAATCAATG
* * * *
56182 CTTGCCTTATTTAAGGGATGAACTTTGATTTTATGAAAAATAGGGCAAATAAAAGATTTTCATGT
194 CTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAATAAAAGATTTCCATGC
* * * * * *
56247 AAAAGAAAATTATCAATATCATTTATCCTAATGAAGAGAAAGTGTTTATAGTGCTTAAGCGTAAA
259 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATAAA
*
56312 ATGAATGAAGATCATTCCTAGAATCCATGTTTGTCTCATTTGAG-ACATAACTTGGACTTTACAA
324 ATGAATGAAGATCATTCCTAGAATCCATGTTTGTCTCATTTGAGAACA-AACTTAGACTTTAC-A
* * * *
56376 AAATTT-GTGGGAAGCAAGCCTTTTTTGC-ATAACCAAAGTATCAGTATCGTGTATCCTTATGAG
387 AAATTTGGTGGGAAGAAAGCCTTTCTTGCGA-AACCAAAGCATCAATATCGTGTATCCTTATGAG
*
56439 AAAACTATGCTTATGGTGCCTAAT
451 AAGACTATGCTTATGGTGCCTAAT
* * * * * *
56463 CTTGAAAAGAATAGGGTTTAGTGTGACTATTCACGTTTGTC-T-TCT--G-G-CAAA-TTCTG--
1 CTTGAAAAGAATGGGGATTAGTATGGC-ATTCATGTTTGTCTTATTTAAGAGACAAACTT-TGAT
* * * *
56519 --T-T-AAAAATGGTGGAAAGAAAAG-CATTTCTTGCGAA-GCCAAAGCATTAATGTCATGCATC
64 TCTATAAAAAATGGTGGAAAG-AAAGCCTTTTCTTGC-AACACCAAAGCATCAATGTCATGTATC
*
56578 TTAATGAAGGGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTGTTATGAGAATCAA
127 CTAATGAAGGGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTGTTATGAGAATCAA
* * * *
56643 TGCTTGCCTTATTTAAGAGATGAACATTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTGCCAT
192 TGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAATAAAAGATTTCCAT
*** * *
56708 GCAAAAGAAAATCATCGGGATCATTTATCCTAATAAGGAGAATGTGCTTATAGTGCCTAATCATA
257 GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATA
* *
56773 AAATGAATGAAGATCATTCCTAGAATCCATGTTTGTCTCACTTGAGACTCAAACTTAGACTTTAC
322 AAATGAATGAAGATCATTCCTAGAATCCATGTTTGTCTCATTTGAGA-ACAAACTTAGACTTTAC
* * * * * * *
56838 AAAATTTGGTGGGAAGAAAGCCTTCCTTGCGAAGCCAGAGCGTTAATATTGTTTATCCTTATGAG
386 AAAATTTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAG
* *
56903 AAGACTATGTTTATAGTGCCTAAT
451 AAGACTATGCTTATGGTGCCTAAT
* * * * * * *
56927 CCTAAAAAGAATGAGGATTATTATGACTATTCATGTTAGTCTTATTTAAGAGACAAACTTAGATT
1 CTTGAAAAGAATGGGGATTAGTATGGC-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * * * **
56992 CGATAAAAAAAAGGTGGAAAGAAAACCTTTTCTTGCAACACC-AA-TATCTGTGTCATGTATCCT
65 CTAT-AAAAAATGGTGGAAAGAAAGCCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCT
* * * * * *
57055 AATGAAGAGAAAGTGTTTTTGGTTCTCAGTATTGAAAAGAATGAAGACTGTTATGAGAATCAAAG
129 AATGAAGGGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTGTTATGAGAATCAATG
* * *
57120 CTTGCCTTATTTAAGGCATGAACTTTGATTTTAAGG-AAATACGGCAAATAAAAGATTTTCATGC
194 CTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAATAAAAGATTTCCATGC
* *
57184 AAAAGAAAATCGTCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCA-AGA
259 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATA-A
* *
57248 AATGAATGAAGGTCATTCCTAGAATCCATGTTTGTCTCATTTGAGACACAAACTTAGACTTTATA
323 AATGAATGAAGATCATTCCTAGAATCCATGTTTGTCTCATTTGAGA-ACAAACTTAGACTTTACA
* * * * * * *
57313 AAATTTAGTGGGAAGAAAGCTTTTCTTGCGAAGCCAAAGCGTTAATATCATGTATCCTTACGAGA
387 AAATTTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGA
* *
57378 AGACTATGTTTATGGTGTCTAAT
452 AGACTATGCTTATGGTGCCTAAT
* *
57401 CTTGAAACA-AATGGGGATTAGTATGG-ATTAATGTTAGTCTTATTTAAGAGACAAACTTTGA-T
1 CTTGAAA-AGAATGGGGATTAGTATGGCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * * ** * *
57463 CGA-AAACAA---TGGAAAGAAAAG-CTTTCCTTGTGACACCAAAGCATCAATTTCATGTATCCA
65 CTATAAAAAATGGTGGAAAG-AAAGCCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCT
* * * *
57523 AATGAAGGGAATGTGGTTTTGGTTCCTAATATTGAAAAGAATGGAGACTATT-TCGGGAATCAAT
129 AATGAAGGGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTGTTAT-GAGAATCAAT
* *
57587 GCTTGCCATATAGTTTAATGCAAAGAAAATAGGGCCCAATATTTTGATTTTAAGGAAAATAGGGC
193 GCTTGCC-T-TA-TTTAA-G----G--GAT---G----A-ACTTTGATTTTAAGGAAAATAGGGC
* * * * *
57652 AAAGAAAAGAGTTT-AATGCAAAAGAAAATCATCAGTATCATTTATCCTAATTAGGAGAATGCGT
240 AAATAAAAGA-TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGT
* * *
57716 TTATAGTGCCTAATCACAAAATGAATGAAGATTATTACC-AGAATCCATGTTTGTCTTATTTGAG
304 TTATAGTGCCTAATCATAAAATGAATGAAGATCATT-CCTAGAATCCATGTTTGTCTCATTTGA-
* * * * *
57780 GAACAAACTTAGACTTTAC-AAATATTGGTAGGAAGAAAGCCTTTGTTACAAAACCAAAGCGTCA
367 GAACAAACTTAGACTTTACAAAAT-TTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCA
* *
57844 ATCTTGTGTATCCTTA
431 ATATCGTGTATCCTTA
57860 CTAGAATCCA
Statistics
Matches: 4872, Mismatches: 667, Indels: 251
0.84 0.12 0.04
Matches are distributed among these distances:
462 2 0.00
463 263 0.05
464 116 0.02
465 5 0.00
466 25 0.01
467 145 0.03
468 346 0.07
469 16 0.00
470 9 0.00
471 11 0.00
472 34 0.01
473 10 0.00
474 513 0.11
475 953 0.20
476 1820 0.37
477 53 0.01
478 7 0.00
479 8 0.00
480 148 0.03
481 19 0.00
482 94 0.02
483 71 0.01
485 1 0.00
486 18 0.00
487 177 0.04
488 8 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (474 bp):
CTTGAAAAGAATGGGGATTAGTATGGCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
TATAAAAAATGGTGGAAAGAAAGCCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAA
TGAAGGGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTGTTATGAGAATCAATGCT
TGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAATAAAAGATTTCCATGCAA
AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATAAAAT
GAATGAAGATCATTCCTAGAATCCATGTTTGTCTCATTTGAGAACAAACTTAGACTTTACAAAAT
TTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGAC
TATGCTTATGGTGCCTAAT
Found at i:54197 original size:159 final size:156
Alignment explanation
Indices: 52591--55643 Score: 727
Period size: 159 Copynumber: 19.3 Consensus size: 156
52581 ATTTGATGGG
* ** * * * * *
52591 AAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTTATGAGTAGACTATGCTTA
1 AAGAAAGCATTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTA
* * ** * ** * * **
52656 TGGTGCCTAATCTTGAAATTAAGGGGGATTAGTATGGGCATTCTTGTTTTTCTTATTTAAGAGAA
66 TGGTGCCTAATCCTAAAAAGAATGGGGATTAGTAT-GATATTCATGTTTGTCTTATTTAAGAGGC
* *
52721 AAACTTTGATTCTATAAAAAATTGTGGA
130 AAACTTTGATTCT-TAAAAAATAGGGGA
* * * * ** * * *
52749 AAGAAAGCCTTTTCTTGCAAGACCAAAGAATCAGTGCCAT-TCATCCCAATGAAG-GGAATATAT
1 AAGAAAG-CATTTCTTGCAAAACCAAAGCATCAATATCATGT-ATCCTAAT-AAGAAGAATATGT
* * ** * *** ** * * *** *
52812 TTTTGGCT-CCCAATATTGAAAAGAATAAAG-TGGGTTATGAGAATCAAAACTTGCCTTATTTAA
63 TTATGG-TGCCTAATCCTAAAAAGAATGGGGATTAG-TATGATATTC-ATGTTTGTCTTATTTAA
* *
52875 G-GG-ATGAACTTTCATT-TTATGAAAAATAGGGCA
125 GAGGCA--AACTTTGATTCTTA--AAAAATAGGGGA
* ** * * * * * *
52908 AATAAAAG-ATTTCCTTGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGATAATGTGTT
1 AA-GAAAGCATTT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTT
* * * * ** * * * * *
52972 TATAGTGACTAATCGTAAAATGAATGAAGATCATTCCTAGA-ATCCATGTTTGTCTTATTTGTAG
64 TATGGTGCCTAATCCTAAAAAGAATGGGGATTAGT-AT-GATATTCATGTTTGTCTTATTT-AAG
* * ** * *
53036 A-ACAAACTTAGGCT-TTACAAAAGTTGATGGG-
126 AGGCAAACTTTGATTCTTA-AAAA-AT-AGGGGA
* * * * * * *
53067 AAGAAAGCCTTTCTTGCGAAACCAATGCATCAATATCGTGTATCCTAATGAGAAGACTATATTTA
1 AAGAAAGCATTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTA
* * * * * *
53132 TGGTGCCTAATCTTGAAACA-AATGGGGATTAGTACGGGTATTCATGTTTATCTTATTTAAGAGA
66 TGGTGCCTAATCCT-AAAAAGAATGGGGATTAGTA-TGATATTCATGTTTGTCTTATTTAAGAGG
* * *
53196 CAAACTTTGATTTTGTCAAAAAT-GGTTGA
129 CAAACTTTGATTCT-TAAAAAATAGG-GGA
* * * * * *
53225 AAGAAAAGCAATAT-TTGCGACACCAAAGCATTAATGTCATGTATCCTAAT--GAATGGAATTTG
1 AAG-AAAGC-ATTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAA--GAATATG
* * * ** * * * * * * * * *
53287 TTTTTGGTTCCTAGTATTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAG
62 TTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGATATTC-ATGTTTGTCTTATTTAAG
* *
53352 -GG-ATGAACTTTAATT-TTAACAAAAATAGGGCA
126 AGGCA--AACTTTGATTCTT-A-AAAAATAGGGGA
** * ** * * * * *
53384 AAGAAAAG-ATTTCCAAGCGAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
1 AAG-AAAGCATTT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTT
* * * * ** * * * *
53448 TATAGTGCCTAATCCCAAAACGATTGAAGATCATTACTAGA-A-TCAATGTTTATCTCATTT-A-
64 TATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTA-T-GATATTC-ATGTTTGTCTTATTTAAG
* * *
53509 AGGCACGAACTTAGACT-TTACAAAAATTGGGGGGA
126 AGGCA--AACTTTGATTCTTA-AAAAA-T-AGGGGA
* * * * *
53544 AA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATAAGAAGACTATGTTTA
1 AAGAAAGCATTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTA
* * * * *
53608 TGGTGTCTAATCCTAAAAAGAATGGGGATTAGTTTGACTATTCATGTTAGTCTTACTTAAGAGAC
66 TGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAGAGGC
* **
53673 AAACTTAGATTCTATAAAAAATAATGGA
130 AAACTTTGATTCT-TAAAAAATAGGGGA
* * * * * * * *
53701 AGGAAAACCTTTTCTTGCAACATCAAAGCATCAATGTCATGTATCCTAATGAAG-GGAATGTGTT
1 AAG-AAAGCATTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAAT-AAGAAGAATATGTT
* ** ** * * * * * ** **
53765 TTTGGAT-CCTAATATTGTAAAGAATGGAGACTATTATGAGAATCAAATCTTCCCTTATTTAA-A
64 TATGG-TGCCTAATCCTAAAAAGAATGGGGATTAGTATGATATTCATGT-TTGTCTTATTTAAGA
* *
53828 GG-ATGAACTTTGATT-TTAAGGAAAATACGGCA
127 GGCA--AACTTTGATTCTTAA--AAAATAGGGGA
* * ** * * * *
53860 AATAAAAG-ATTTCATGCAATAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTT
1 AA-GAAAGCATTTCTTGCAA-AACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTT
* * * * *
53924 TATAGTGCCAAAT-C--AAAA-AAT---GAAT-GAATGATAATCCATGTTTGTCTTATTT--GAG
64 TATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAT-ATTCATGTTTGTCTTATTTAAGAG
* * *
53979 GCACAAAC-TT-ATACTTTACAAAATTTGGTAGG-
128 G--CAAACTTTGATTC-TTA-AAAAATAGG--GGA
* ** * * * *
54011 AAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATTGTGTATCCTTATGAGAAGACTAAGTTTA
1 AAGAAAGCATTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTA
54076 TGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGC
66 TGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAGAGGC
*
54141 AAACTTTGATTCTGTCAAAAATAGGGGA
130 AAACTTTGATTCT-TAAAAAATAGGGGA
* * * * * * *
54169 AATAAAGGCATTTCTTGCAACACCAAAGCATCAATGTCATGTATCTTAATGATG-GGAATGTGTT
1 AAGAAA-GCATTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAAT-AAGAAGAATATGTT
* * * ** * * * * * * * *
54233 TTTGGTTCCCAATATTGAAAA-AATGGAGACT-GTTACGAGAATCAATGCTTGCCTTATTTAA-A
64 TATGGTGCCTAATCCTAAAAAGAATGGGGATTAG-TATGATATTC-ATGTTTGTCTTATTTAAGA
* *
54295 GG-ATGAACTTTGATT-TTAAGGAAAATAAGGCA
127 GGCA--AACTTTGATTCTTAA--AAAATAGGGGA
* * ** * * * * * *
54327 AGGAAAAG-ATTTCCATGCAAAAGAAAATCATCAATATCGTTTATCCTAATAAGGAGAATGTGCT
1 AAG-AAAGCATTT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTT
* * * * ** * * * * *
54391 TATAGTGCCTACTCGTAAAATGAATGAAGATCATTCCTAGA-ATTCATGTATGTCTCATTTAAGA
64 TATGGTGCCTAATCCTAAAAAGAATGGGGATTAGT-AT-GATATTCATGTTTGTCTTATTTAAGA
** * * * *
54455 CACAAA-TTTGGACT-TTACAAAATTTGGTGGG
127 GGCAAACTTT-GATTCTTA-AAAAATAGG-GGA
* * ** * ** *
54486 AAGAAAGCCA-TTCTTGCGAAACCAAAGCGTCAATATTGTGTATCCTTACGAGAAGACA-ATGCT
1 AAGAAAG-CATTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGA-ATATGTT
* * * * * * *
54549 TATGGTGCCTAATCTTGAAATGGATGGGGATTAGTATGGGTATTCATGCTTGTCTTATTTATGAG
64 TATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTAT-GATATTCATGTTTGTCTTATTTAAGAG
* * * *
54614 ACAAACTTAGATTCTATCAAAAAT-GGTTGA
128 GCAAACTTTGATTCT-TAAAAAATAGG-GGA
* * ** * * * * *
54644 AAGGAATGCTTTTCTTGCGGCAA-CAAAGCTTCAATGTCTTGTATCCTAATGAAG-GGAATGTGC
1 AA-GAAAGCATTTCTTGC-AAAACCAAAGCATCAATATCATGTATCCTAAT-AAGAAGAATATG-
* * * * * * * * * *
54707 TTT-TGGTTCCCAATCTTGAAAAGAATGGAGACT-GTTATGAGAATCAATGCTTGCCTTATTTAA
62 TTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAG-TATGATATTC-ATGTTTGTCTTATTTAA
* *
54770 -AGG-ATGAACTTTGATT-TTAAGGAAAATAAGGCA
125 GAGGCA--AACTTTGATTCTTAA--AAAATAGGGGA
*** ** ** * * *
54803 AAGAAAAG-ATTTCCAACCAAAAGAAAATTATCAATATCATCTATCCTAATAAGAAGAATGTGCT
1 AAG-AAAGCATTT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTT
* * * * ** * * * *
54867 TATAGTTCCTAATCATAAAATGAATGAAGATTATTCATAGA-ATCCATGTATGTCTCATTT--GA
64 TATGGTGCCTAATCCTAAAAAGAATGGGGATTAGT-AT-GATATTCATGTTTGTCTTATTTAAGA
* * * * *
54929 GACATGAACTTAGACT-TTACAAAATTTGTTGGG-
127 GGCA--AACTTTGATTCTTA-AAAAATAG--GGGA
* * * * * * *
54962 AAGAAGGCCA-TTCTTGCCAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGATTATGTTT
1 AAGAAAG-CATTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTT
* * * * *
55026 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTACTCATATTTATCTTATTTAAGAGA
65 ATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAGAGG
* * *
55091 CAGAGTTAGATTCTATAAAAAAT-GGTGGA
129 CAAACTTTGATTCT-TAAAAAATAGG-GGA
* * * * * * *
55120 AAGAAAACCTTTTCTTGCCACATCAAAGCATCAATGTCATGTATCCTAATGAAG-GGAATATGTT
1 AAG-AAAGCATTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAAT-AAGAAGAATATGTT
* * ** * * * * * * * * * *
55184 TTTGGCT-CCCAATATTGAATAGAATAGAG-TTTGCTATGAGAATCAAAGCTTGCCTTATTT-AG
64 TATGG-TGCCTAATCCTAAAAAGAATGGGGATTAG-TATGATATTC-ATGTTTGTCTTATTTAAG
* * * *
55246 -GGGATGAACTTTGATT-TTATGGAAATTAAGGGA
126 AGGCA--AACTTTGATTCTTA--AAAAATAGGGGA
* * * ** ** * * * * *
55279 AATAAAAGAATTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
1 AA-GAAAGCATTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTT
* * * * ** * * * * * ** *
55344 ATAGTGCCTAAGCATAAAATGAATGAAGATCATTCCTAGA-ATCCATGTTTGTCTCATTTGGGAC
65 ATGGTGCCTAATCCTAAAAAGAATGGGGATTAGT-AT-GATATTCATGTTTGTCTTATTTAAGAG
* * ** * * * *
55408 ACGAACTTAAACT-TTACGAAAATTGGTGGG
128 GCAAACTTTGATTCTTA-AAAAATAGG-GGA
* * * * * * *
55438 AAGAAAGCCTTT-TTTCATAACCAAAGCATCAATATCGTGTATCCTTATGAGAA-AACTATGCTT
1 AAGAAAGCATTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAA-TATGTTT
* * * *
55501 ATGATGCCTAATCCTGAAAAGAATAGGGATTAGTGTGACTATTCAT-TTTGTCTGT-TTTAAGAG
65 ATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCT-TATTTAAGAG
*
55564 GCAAACTTTGATTCTATCAAAAAT-GGTGGA
128 GCAAACTTTGATTCT-TAAAAAATAGG-GGA
** * * * * *
55594 AAGAAAAGCATTTCTTGTGACACCAAAGAATCAATGTCATGCATCTTAAT
1 AAG-AAAGCATTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAAT
55644 GAAAGGAATG
Statistics
Matches: 2042, Mismatches: 662, Indels: 382
0.66 0.21 0.12
Matches are distributed among these distances:
149 2 0.00
150 57 0.03
151 31 0.02
152 9 0.00
153 5 0.00
154 3 0.00
155 5 0.00
156 43 0.02
157 134 0.07
158 656 0.32
159 995 0.49
160 88 0.04
161 14 0.01
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (156 bp):
AAGAAAGCATTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTA
TGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGATATTCATGTTTGTCTTATTTAAGAGGCA
AACTTTGATTCTTAAAAAATAGGGGA
Found at i:57369 original size:158 final size:158
Alignment explanation
Indices: 56727--57401 Score: 382
Period size: 158 Copynumber: 4.3 Consensus size: 158
56717 AATCATCGGG
* * * *
56727 ATCATTTATCCTAATAAGGAGAATGTGCTTATAGTGCCTAATCATAAAATGAATGAAGATCATTC
1 ATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCATAAAATGAATGAAGGTCATTC
* * * * ** *
56792 CTAGAATCCATGTTTGTCTCACTTGAGACTCAAACTTAGACTTTACAAAAT-TTGGTGGGAAGAA
66 CTAGAATCCATGTTTGTCTCATTTAAGACACAAACTTAGA-TTTATAAAATATACGTGGAAAGAA
* * *
56856 AGCCTTCCTTGCGAAGCCAGAGCGTTAAT
130 AGCTTTTCTTGCGAAGCCAAAGCGTTAAT
** * * * * * *
56885 ATTGTTTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATCCTAAAAAGAATG-AGG--ATTA
1 ATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCATAAAATGAATGAAGGTCATTC
* * * * * * * * *
56947 TTATGACTATTCATGTTAGTCTTATTTAAGAGACAAACTTAGATTCGATAAAAAAAAGGTGGAAA
66 CTA-GA--ATCCATGTTTGTCTCATTTAAGACACAAACTTAGATT-TATAAAATATACGTGGAAA
* * * *
57012 GAAAACCTTTTCTTGC-AACACCAATATC--T-GT
127 G-AAAGCTTTTCTTGCGAA-GCCAA-AGCGTTAAT
* * * * * * * *
57043 GTCATGTATCCTAATGAAGAGAA-AGTGTTTTTGGT-TCTCAGT-ATTGAAAA-GAATGAA-GAC
1 ATCATTTATCCTAATGAGGAGAATA-TGTTTATAGTGCCT-AATCA-T-AAAATGAATGAAGGTC
** * * * * * * ** *
57103 -TGTTATGAGAATCAAAGCTTGCCTTATTTAAGGCATGAACTTTGATTT-TAAGGAA-ATACG-G
62 AT-TCCT-AGAATCCATGTTTGTCTCATTTAAGACACAAACTTAGATTTATAA--AATATACGTG
* * * * * * * *
57164 CAAATAAAAGATTTTCATGCAAAAG-AAAATCGTCAAT
123 GAAA-GAAAGCTTTTCTTGC-GAAGCCAAAGCGTTAAT
57201 ATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCA-AGAAATGAATGAAGGTCATT
1 ATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCATA-AAATGAATGAAGGTCATT
* * *
57265 CCTAGAATCCATGTTTGTCTCATTTGAGACACAAACTTAGACTTTATAAAATTTA-GTGGGAAGA
65 CCTAGAATCCATGTTTGTCTCATTTAAGACACAAACTTAGA-TTTATAAAATATACGTGGAAAGA
57329 AAGCTTTTCTTGCGAAGCCAAAGCGTTAAT
129 AAGCTTTTCTTGCGAAGCCAAAGCGTTAAT
* * * * * * *
57359 ATCATGTATCCTTACGAGAAGACTATGTTTATGGTGTCTAATC
1 ATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATC
57402 TTGAAACAAA
Statistics
Matches: 372, Mismatches: 108, Indels: 74
0.67 0.19 0.13
Matches are distributed among these distances:
155 8 0.02
156 23 0.06
157 16 0.04
158 267 0.72
159 33 0.09
160 22 0.06
161 3 0.01
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.32
Consensus pattern (158 bp):
ATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCATAAAATGAATGAAGGTCATTC
CTAGAATCCATGTTTGTCTCATTTAAGACACAAACTTAGATTTATAAAATATACGTGGAAAGAAA
GCTTTTCTTGCGAAGCCAAAGCGTTAAT
Found at i:57944 original size:107 final size:107
Alignment explanation
Indices: 57750--57952 Score: 291
Period size: 107 Copynumber: 1.9 Consensus size: 107
57740 ATGAAGATTA
*
57750 TTACCAGAATCCATGTTTGTCTTATTTGAGGAACAAACTTAGACTTTACAAATATTGGTAGGAAG
1 TTACCAGAATCCATGTTTGTCTCATTTGAGGAACAAACTTAGACTTTACAAATATTGGTAGGAAG
* *
57815 AAAGCCTTTGTTACAAAACCAAAGCGTCAATCTTGTGTATCC
66 AAAGCCTTTCTTACAAAACCAAAGCATCAATCTTGTGTATCC
* * * * * *
57857 TTACTAGAATCCATGTTTTTCTCATTTGAGGCATAAACTTATACTTTACAAATATTGGT-GGGAG
1 TTACCAGAATCCATGTTTGTCTCATTTGAGGAACAAACTTAGACTTTACAAATATTGGTAGGAAG
* *
57921 AAAAGCCTTTCTTGCAAAGCCAAAGCATCAAT
66 -AAAGCCTTTCTTACAAAACCAAAGCATCAAT
57953 ATCATGTATG
Statistics
Matches: 84, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
106 4 0.05
107 80 0.95
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (107 bp):
TTACCAGAATCCATGTTTGTCTCATTTGAGGAACAAACTTAGACTTTACAAATATTGGTAGGAAG
AAAGCCTTTCTTACAAAACCAAAGCATCAATCTTGTGTATCC
Found at i:57980 original size:107 final size:106
Alignment explanation
Indices: 57755--57981 Score: 242
Period size: 107 Copynumber: 2.1 Consensus size: 106
57745 GATTATTACC
* *
57755 AGAATCCATGTTTGTCTTATTTGAGGAACAAACTTAGACTTTACAAATATTGGTAGGAAGAAAGC
1 AGAAACCATGTTTGTCTCATTTGAGGAACAAACTTAGACTTTACAAATATTGGTAGGAAGAAAGC
* * * ** * *
57820 CTTTGTTACAAAACCAAAGCGTCAATCTTGTGTATCCTTACT
66 CTTTCTTACAAAACCAAAGCATCAATATCATGTAT-CGTAAT
* * * * * *
57862 AGAATCCATGTTTTTCTCATTTGAGGCATAAACTTATACTTTACAAATATTGGT-GGGAGAAAAG
1 AGAAACCATGTTTGTCTCATTTGAGGAACAAACTTAGACTTTACAAATATTGGTAGGAAG-AAAG
* *
57926 CCTTTCTTGCAAAGCCAAAGCATCAATATCATGTAT-GTAAT
65 CCTTTCTTACAAAACCAAAGCATCAATATCATGTATCGTAAT
*
57967 GAGAAGACTATGTTT
1 -AGAA-ACCATGTTT
57982 ATGGTGCCTA
Statistics
Matches: 100, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
105 3 0.03
106 8 0.08
107 89 0.89
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (106 bp):
AGAAACCATGTTTGTCTCATTTGAGGAACAAACTTAGACTTTACAAATATTGGTAGGAAGAAAGC
CTTTCTTACAAAACCAAAGCATCAATATCATGTATCGTAAT
Found at i:58399 original size:583 final size:585
Alignment explanation
Indices: 57266--58442 Score: 1433
Period size: 583 Copynumber: 2.0 Consensus size: 585
57256 AAGGTCATTC
*
57266 CTAGAATCCATGTTTGTCTCATTTGAGACACAAACTTAGACTTTATAAAATTTAGTGGGAAGAAA
1 CTAGAATCCATGTTTGTCTCATTTGAGACACAAACTTAGACTTTACAAAATTTAGTGGGAAGAAA
* * * * * *
57331 GCTTTTCTTGCGAAGCCAAAGCGTTAATATCATGTATCCTTACGAGAAGACTATGTTTATGGTGT
66 GCCTTTCTTGCAAAGCCAAAGCATCAATATCATGTATCCTAACGAGAAGACTATGTTTATGGTGC
* * *
57396 CTAATCTTGAAACAAATGGGGATTAGTATGGATTAATGTTAGTCTTATTTAAGAGACAAACTTTG
131 CTAATCCTGAAACAAATAGGGAGTAGTATGGATTAATGTTAGTCTTATTTAAGAGACAAACTTTG
* * *
57461 ATCGAAAACAATGGAAAGAAAAGCTTTCCTTGTGACACCAAAGCATCAATTTCATGTATCCAAAT
196 ATCGAAAACAAGGGAAAGAAAAGCTTTCCTTGTGACACCAAAGCATCAATGTCATGAATCCAAAT
* * *
57526 GAAGGGAATGTGGTTTTGGTTCCTAATATTGAAAAGAATGGAGACTATTTCGGGAATCAATGCTT
261 GAAGGGAATGCGGTTTTGGTTCCTAATATTGAAAAAAATGGAGACTATTTCGAGAATCAATGCTT
*
57591 GCCATATAGTTTAATGCAAAGAAAATAGGGCCCAATATTTTGATTTTAAGGAAAATAGGGCAAAG
326 GCCATATAGTTTAATG---AG-AAAT--GG--C-ATATTTTGATGTTAAGGAAAATAGGGCAAAG
* * * *
57656 AAAAGAGTTTAATGCAAAAGAAAATCATCAGTATCATTTATCCTAATTAGGAGAATGCGTTTATA
382 AAAAGAGTTTAATGCAAAAGAAAATCATAAATATCATTTATCCTAATGACGAGAATGCGTTTATA
* *
57721 GTGCCTAATCACAAAATGAATGAAGATTATTACCAGAATCCATGTTTGTCTTATTTGAGGAACAA
447 GTGCCTAATCACAAAATGAATGAAGATCATTACCAGAATCCATGTTTGTCTCATTTGAGGAACAA
* * * *
57786 ACTTAGACTTTACAAATATTGGTAGGAAGAAAGCCTTT-GTTACAAAACCAAAGCGTCAATCTTG
512 ACTTAGACTTTAAAAATATTGGTAGGAAGAAAGCCTTTCGTGA-AAAACCAAAGCATCAATATTG
57850 TGTATCCTTA
576 TGTATCCTTA
* * * * *
57860 CTAGAATCCATGTTTTTCTCATTTGAGGCATAAACTTATACTTTAC-AAATATTGGTGGG-AGAA
1 CTAGAATCCATGTTTGTCTCATTTGAGACACAAACTTAGACTTTACAAAAT-TTAGTGGGAAG-A
* *
57923 AAGCCTTTCTTGCAAAGCCAAAGCATCAATATCATGTAT-GTAATGAGAAGACTATGTTTATGGT
64 AAGCCTTTCTTGCAAAGCCAAAGCATCAATATCATGTATCCTAACGAGAAGACTATGTTTATGGT
* * * **
57987 GCCTAATCCTGAAA-AGAATAGGGAGTAG-AGTGACTATTCATGTTTGTCTTATTTAAGAGATGA
129 GCCTAATCCTGAAACA-AATAGGGAGTAGTA-TG--GATTAATGTTAGTCTTATTTAAGAGACAA
* *
58050 ACTTTGATTCTATCAAA-AACGGGGGAAAGAAAAGCTTTTTCTTGTGACACCAAAGCATCAATGT
190 ACTTTGA-TCGA--AAACAA---GGGAAAGAAAAGC-TTTCCTTGTGACACCAAAGCATCAATGT
* * * *
58114 CATGAATCCTAATGAAGGGAATGCGTTTTTGGTTTCC-AATCTTGAAAAAAATGGAGACTGTTAT
248 CATGAATCCAAATGAAGGGAATGCGGTTTTGG-TTCCTAATATTGAAAAAAATGGAGACTATT-T
** *
58178 -GAGAATCTTTGCTTGTC-T-TA-TTTAA-G-G-AAT-G-A-ATTTTGATGTTAAGGAAAATAGG
311 CGAGAATCAATGCTTGCCATATAGTTTAATGAGAAATGGCATATTTTGATGTTAAGGAAAATAGG
* * * *
58233 GCAAAGAAAAGATTTTCATGCAAAAGAAAATCGTAAATATCATTTATCCTAATGACGAGAATGTG
376 GCAAAGAAAAGAGTTTAATGCAAAAGAAAATCATAAATATCATTTATCCTAATGACGAGAATGCG
* *
58298 TTTATAGTGCCTAATCATAAAATGAATGAAGATCATT-CCTAGAATTCATGTTTGTCTCATTTGA
441 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACC-AGAATCCATGTTTGTCTCATTTGA
* * * *
58362 -GACACGAATTTAGACTTTAAAAA-ATTTGGTGGGAAGAAAGCCTTTCGTGAGAAACCAAAGCAT
505 GGA-ACAAACTTAGACTTTAAAAATA-TTGGTAGGAAGAAAGCCTTTCGTGAAAAACCAAAGCAT
58425 CAATATTGTGTATCCTTA
568 CAATATTGTGTATCCTTA
58443 TGAGAAGACT
Statistics
Matches: 506, Mismatches: 58, Indels: 49
0.83 0.09 0.08
Matches are distributed among these distances:
582 5 0.01
583 200 0.40
584 4 0.01
588 1 0.00
591 3 0.01
592 2 0.00
593 53 0.10
594 84 0.17
595 31 0.06
596 3 0.01
597 3 0.01
598 8 0.02
599 2 0.00
600 13 0.03
601 89 0.18
602 5 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (585 bp):
CTAGAATCCATGTTTGTCTCATTTGAGACACAAACTTAGACTTTACAAAATTTAGTGGGAAGAAA
GCCTTTCTTGCAAAGCCAAAGCATCAATATCATGTATCCTAACGAGAAGACTATGTTTATGGTGC
CTAATCCTGAAACAAATAGGGAGTAGTATGGATTAATGTTAGTCTTATTTAAGAGACAAACTTTG
ATCGAAAACAAGGGAAAGAAAAGCTTTCCTTGTGACACCAAAGCATCAATGTCATGAATCCAAAT
GAAGGGAATGCGGTTTTGGTTCCTAATATTGAAAAAAATGGAGACTATTTCGAGAATCAATGCTT
GCCATATAGTTTAATGAGAAATGGCATATTTTGATGTTAAGGAAAATAGGGCAAAGAAAAGAGTT
TAATGCAAAAGAAAATCATAAATATCATTTATCCTAATGACGAGAATGCGTTTATAGTGCCTAAT
CACAAAATGAATGAAGATCATTACCAGAATCCATGTTTGTCTCATTTGAGGAACAAACTTAGACT
TTAAAAATATTGGTAGGAAGAAAGCCTTTCGTGAAAAACCAAAGCATCAATATTGTGTATCCTTA
Found at i:58752 original size:476 final size:473
Alignment explanation
Indices: 57857--59393 Score: 1882
Period size: 476 Copynumber: 3.2 Consensus size: 473
57847 TTGTGTATCC
** * *
57857 TTACTAGAATCCATGTTTTTCTCATTTGAGGCATAAACTTATACTTTACAAATA-TTGGTGGG-A
1 TTACTAGAATCCATGTTTTTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTTGGTGGGAA
* * * *
57920 GAAAAGCCTTTCTTGCA-AAGCCAAAGCATCAATATCATGTAT-GTAATGAGAAGACTATGTTTA
66 G-AAAGCCTTTCGTG-AGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTA
* *
57983 TGGTGCCTAATCCTGAAAAGAATAGGGAGTAG-AGTGACTATTCATGTTTGTCTTATTTAAGAGA
129 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTA-TGACTATTCATGTTTGTCTTATTTAAGAGA
* * * * *
58047 TGAACTTTGATTCTATCAAAAACGGGGGAAAGAAAAGCTTTTTCTTGTGACACCAAAGCATCAAT
193 -CAAATTTGATTCTATCAAAAATGGCGGAAAGAAAAGC-TTTTCTTGCGACACCAAAGCATCAAT
* *
58112 GTCATGAATCCTAATGAAGGGAATGCGTTTTTGGTT-TCCAATCTTGAAAAAAATGGAGACTGTT
256 GTCTTGAATCCTAATGAAGGGAATGTG-TTTTGGTTCT-CAATCTTGAAAAAAATGGAGACTGTT
* ** * *
58176 ATGAGAATCTTTGCTTGTCTTATTTAAGGAATGAATTTTGATGTTAAGGAAAATAGGGCAAAGAA
319 ATGGGAATCAATGCTTG-CTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAA
* *
58241 AAGATTTTCATGCAAAAGAAAATCGTAAATATCATTTATCCTAATGACGAGAATGTGTTTATAGT
383 AAG-TTTTCATGCAAAAGAAAATCATAAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGT
*
58306 GCCTAATCATAAAATGAATGAAGATCA
447 GCCTAATCACAAAATGAATGAAGATCA
* * * * *
58333 TTCCTAGAATTCATGTTTGTCTCATTTGAGACACGAATTTAGACTTTA-AAAAATTTGGTGGGAA
1 TTACTAGAATCCATGTTTTTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTTGGTGGGAA
**
58397 GAAAGCCTTTCGTGAGAAACCAAAGCATCAATATTGTGTATCCTTATGAGAAGACTATGTTTATG
66 GAAAGCCTTTCGTGAGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATG
* * * * *
58462 GTGCCTAATCTTGTAATGAATGGGGATTAGTAT-AGGTATTCATGCTTGTCTTATTTAAGAGACA
131 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA-CTATTCATGTTTGTCTTATTTAAGAGACA
*** * *
58526 AATTTAGATTCTATCAAAAATGGTTAAAAGGAAAGCTTTTCTTGCGACAGCAAAGCATCAATGTC
195 AATTT-GATTCTATCAAAAATGGCGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
* * * * *
58591 TTGCATCATAATGAAGGGAATGTGCTTTTGGTTCTCAATCTCGAAAAGAATGGACACTGTTATGG
259 TTGAATCCTAATGAAGGGAATGTG-TTTTGGTTCTCAATCTTGAAAAAAATGGAGACTGTTATGG
* * *
58656 GAATCAATGCTTGCCTTATTTATGGGATGAACTTAGATTTTAAGGAAAATAGGGCAAAGAAAAGT
323 GAATCAATGCTTG-CTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGT
* * * *
58721 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGCATGTGTTTATGGTGCCT
387 TTT-CATGCAAAAGAAAATCATAAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCCT
*
58786 AATCACAAAATGAAAGAAGATCA
451 AATCACAAAATGAATGAAGATCA
* ** * * *
58809 TTACTAGAATCCATGTTTTTCTTATTTGAGGTGCGAACTTAAACTTTACCAAAATTT-ATGGGAA
1 TTACTAGAATCCATGTTTTTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTTGGTGGGAA
* * * * * * *
58873 GAAAGCCTTTCTTGTGAAACCAAAGCGTCAGTATCATTTATCCTTATGAGAAGAATTTGTTTATG
66 GAAAGCCTTTCGTGAGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATG
** * * *
58938 GTGCCCCATCCTAAAAAGAATGGGAATTAGTATGACTATTCATGTTTGTCTTATTTAAAAGACAA
131 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAA
*
59003 ACTTTGATTCTATCAAAAATGGCGGAAAGAAAAGCATTTCTTGCGACACCAAAGCATCAATGTCA
196 A-TTTGATTCTATCAAAAATGGCGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC-
* * * * * *
59068 TT-TATCCTAAAGAAGGGAATGTGTTCTTGGTTCCCAATCTTTAAAAAAATGGAGTCTATTATGA
259 TTGAATCCTAATGAAGGGAATGTGTT-TTGGTTCTCAATCTTGAAAAAAATGGAGACTGTTATG-
* * *
59132 GG-ATCAATGCTTGTTATATTTAAGGGATAAATTTTTATTTTAAGG-AAATAGGGCAAA-ATAAA
322 GGAATCAATGCTTGCT-TATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGA-AAA
* * * * * **
59194 TATTTTCGTCCAAAAGAAAATCATTAATATCTTTTATCCTAATGAAGAGAATGCATTTATAGTGC
385 -GTTTTCATGCAAAAGAAAATCATAAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGC
59259 CTAA-CAACAAAATGAATGAAGATCA
449 CTAATC-ACAAAATGAATGAAGATCA
* * *
59284 TTACTTGAATCCATGTTTTTCTCATTTGAGGCATGAACTTAGACTTTACAAAAA-TTGGTGAGAA
1 TTACTAGAATCCATGTTTTTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTTGGTGGGAA
* * **
59348 GAAAG-CTTTTGTTATGAAACCAAAGCATCAATATTGTGTATCCTTA
66 GAAAGCCTTTCGTGA-GAAACCAAAGCATCAATATCATGTATCCTTA
59394 CAAGAATCCG
Statistics
Matches: 904, Mismatches: 136, Indels: 43
0.83 0.13 0.04
Matches are distributed among these distances:
474 9 0.01
475 182 0.20
476 597 0.66
477 115 0.13
478 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (473 bp):
TTACTAGAATCCATGTTTTTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTTGGTGGGAA
GAAAGCCTTTCGTGAGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATG
GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAA
ATTTGATTCTATCAAAAATGGCGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTT
GAATCCTAATGAAGGGAATGTGTTTTGGTTCTCAATCTTGAAAAAAATGGAGACTGTTATGGGAA
TCAATGCTTGCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGTTTTC
ATGCAAAAGAAAATCATAAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCA
CAAAATGAATGAAGATCA
Found at i:59476 original size:107 final size:106
Alignment explanation
Indices: 59290--59488 Score: 283
Period size: 107 Copynumber: 1.9 Consensus size: 106
59280 ATCATTACTT
* * * *
59290 GAATCCATGTTTTTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCT
1 GAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTCTACAAAAATTGATGAGAAAAAAGCT
* *
59355 TTTGTTATGAAACCAAAGCATCAATATTGTGTATCCTTACAA
66 TTCGTCA-GAAACCAAAGCATCAATATTGTGTATCCTTACAA
* * *
59397 GAATCCGTGTTTGTCTCATTTGAGGTATGAACTTAGACTCTACAAAAATTGATGGGAAAAAAGCC
1 GAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTCTACAAAAATTGATGAGAAAAAAG-C
59462 TTTCGTGCA-AAACCAAAGCATCAATAT
65 TTTCGT-CAGAAACCAAAGCATCAATAT
59489 CATGTGTTCT
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 74 0.91
108 6 0.07
109 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (106 bp):
GAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTCTACAAAAATTGATGAGAAAAAAGCT
TTCGTCAGAAACCAAAGCATCAATATTGTGTATCCTTACAA
Found at i:59918 original size:582 final size:582
Alignment explanation
Indices: 58809--59975 Score: 1443
Period size: 582 Copynumber: 2.0 Consensus size: 582
58799 AAGAAGATCA
* * * * * * * *
58809 TTACTAGAATCCATGTTTTTCTTATTTGAGGTGCGAACTTAAACTTTACCAAAATTTATGGGAAG
1 TTACAAGAATCCATGTTTGTCTCATTTGAGGTACGAACTTAAACTCTACAAAAATTGATGGGAAA
* ** * * * * **
58874 AAAGCCTTTCTTGTGAAACCAAAGCGTCAGTATCATTTATCCTTATGAGAAGAATTTGTTTATGG
66 AAAGCCTTTCGTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAACATGTTTATGG
* *
58939 TGCCCCATCCTAAAAAGAATGGGAATTAGTATGACTATTCATGTTTGTCTTATTTAAAAGACAAA
131 TGCCCAATCCTAAAAAGAATGGGAATTAGTATGACTATTCATGTTTATCTTATTTAAAAGACAAA
* * *
59004 CTTTGATTCTATCAAAAATGGCGGAAAGAAAAGCATTTCTTGCGACACCAAAGCATCAATGTCAT
196 CTTTGATTCTATCAAAAACGGCGGAAAAAAAAGCATTTCTTGCGACACCAAAGCATAAATGTCAT
* * * * * * *
59069 TTATCCTAAAGAAGGGAATGTGTTCTTGGTTCCCAATCTTTAAAAAAATGGAGTCTATTATGAGG
261 GTATCCTAAAGAAGGGAACGTGTTCTTGGTTCCCAATCTTGAAAAAAATAGAGACTATTACGAGA
* * * *
59134 ATCAATGCTTGTTATATTTAAGGGATAAATTTTTATTTTAAGGAAATAGGGCAAAATAAATATTT
326 ATCAATGCTTGTTATATTTAAGGGATAAATTCTGATGTTAAGGAAATAGGGCAAAATAAAGATTT
* * * * * *
59199 TCGTCCAAAAGAAAATCATTAATATCTTTTATCCTAATGAAGAGAATGCATTTATAGTGCCTAAC
391 CCATCCAAAAGAAAATCATAAATATCATTTATCCTAATGAAGACAATGCATTTATAGTACCTAAC
* * * *
59264 AACAAAATGAATGAAGATCATTACTTGAATCCATGTTTTTCTCATTTGAGGCATGAACTTAGACT
456 AACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGACACGAACTTAGACT
* * * *
59329 TTACAAAAATTGGTGAGAAGAAAG-CTTTTGTTATGAAACCAAAGCATCAATATTGTGTATCC
521 TTACAAAAATTGGTGAGAAGAAAGCCTTTCG-TACGAAACAAAAACATCAATATTGTGTATCC
* * *
59391 TTACAAGAATCCGTGTTTGTCTCATTTGAGGTATGAACTTAGACTCTACAAAAATTGATGGGAAA
1 TTACAAGAATCCATGTTTGTCTCATTTGAGGTACGAACTTAAACTCTACAAAAATTGATGGGAAA
* *
59456 AAAGCCTTTCGTGCAAAACCAAAGCATCAATATCATGTGTTCTAATGAGAA-AACCATGTTTATG
66 AAAGCCTTTCGTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAA-CATGTTTATG
* * * ** *
59520 GTGCCTAATCCTGAAAAGAATAGGG-ATTAG-AGTGACTATTCTTGTTTATCTTATTTAGGAGAT
130 GTGCCCAATCCTAAAAAGAAT-GGGAATTAGTA-TGACTATTCATGTTTATCTTATTTAAAAGAC
* * *
59583 GAACTTTGATTCTATCAAAAACGG-GGAAAAAAAAGCTTTTCTTGTGACACCAAAGCATAAATGT
193 AAACTTTGATTCTATCAAAAACGGCGGAAAAAAAAGCATTTCTTGCGACACCAAAGCATAAATGT
* * * * *
59647 CATGTATCCTAATA-AAGGGAACGTGTTTTTGGTTTCTAATCTTGAAAAGAATAGAGACTGTTAC
258 CATGTATCCTAA-AGAAGGGAACGTGTTCTTGGTTCCCAATCTTGAAAAAAATAGAGACTATTAC
** *
59711 GAGAATCGTTGCTTGTCT-TATTTAAGGGATGAATTCTGATGTTAAGGAAAATAGGGCAAAGA-A
322 GAGAATCAATGCTTGT-TATATTTAAGGGATAAATTCTGATGTTAAGG-AAATAGGGCAAA-ATA
* ** * **
59774 AAGATTTCCATGCAAAAGAAAATTGTAAATATCATTTATCCTAATGATGACAATGTGTTTATAGT
384 AAGATTTCCATCCAAAAGAAAATCATAAATATCATTTATCCTAATGAAGACAATGCATTTATAGT
* *
59839 ACCTAATC-ATAAAATGAATGAAGATCATTCCTAGAATCCATGTTTATCTCATTTGAGACACGAA
449 ACCTAA-CAACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGACACGAA
* * * * * *
59903 TTTAGACTTTACAAAATTTGGTGGGAAGAAAGCCTTTCGTGCGAAACAAAAACGTTAATATTGTG
513 CTTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTTCGTACGAAACAAAAACATCAATATTGTG
59968 TATCC
578 TATCC
59973 TTA
1 TTA
59976 TGAGAAGACT
Statistics
Matches: 493, Mismatches: 83, Indels: 18
0.83 0.14 0.03
Matches are distributed among these distances:
581 128 0.26
582 355 0.72
583 10 0.02
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.33
Consensus pattern (582 bp):
TTACAAGAATCCATGTTTGTCTCATTTGAGGTACGAACTTAAACTCTACAAAAATTGATGGGAAA
AAAGCCTTTCGTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAACATGTTTATGG
TGCCCAATCCTAAAAAGAATGGGAATTAGTATGACTATTCATGTTTATCTTATTTAAAAGACAAA
CTTTGATTCTATCAAAAACGGCGGAAAAAAAAGCATTTCTTGCGACACCAAAGCATAAATGTCAT
GTATCCTAAAGAAGGGAACGTGTTCTTGGTTCCCAATCTTGAAAAAAATAGAGACTATTACGAGA
ATCAATGCTTGTTATATTTAAGGGATAAATTCTGATGTTAAGGAAATAGGGCAAAATAAAGATTT
CCATCCAAAAGAAAATCATAAATATCATTTATCCTAATGAAGACAATGCATTTATAGTACCTAAC
AACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGACACGAACTTAGACT
TTACAAAAATTGGTGAGAAGAAAGCCTTTCGTACGAAACAAAAACATCAATATTGTGTATCC
Found at i:68792 original size:936 final size:936
Alignment explanation
Indices: 67597--69566 Score: 2819
Period size: 936 Copynumber: 2.1 Consensus size: 936
67587 TCTCATTTAA
* * *** * *
67597 GGTGGGAAGAAAGCTTTTCCTATGTAACCAAAGCATTAATATCGTGTATCCTTATGAGAACACTA
1 GGTGGGAAGAAAGCCTTTCGTACAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTA
* * ** *
67662 TGTTTATGGTGCTTAATCCTAAAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTA
66 TGTTTATGGTGCCTAATCTTGTAACGAAT--GG----G--T----ATTCATGTTTGTCTTATTTA
67727 TGAGACAAACTTTGATTCAGTCAAAAACGGTTGAAAGAAAGCATTTTTTACGACACCAAAGCATT
119 TGAGACAAACTTTGATTCAGTCAAAAACGGTTGAAAGAAAGCATTTTTTACGACACCAAAGCATT
67792 AATGTCATGTATCCTAAAGAAAAGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTG
184 AATGTCATGTATCCTAAAGAAAAGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTG
67857 TTACGAAAACCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
249 TTACGAAAACCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* * **
67922 AAAAGATTTTCATGCAAAA-AAAATCATCAATT-TCATTTATCCTAATGAGGAGAATGTGTTTAT
314 AAAAGATTTTCAAGCAAAAGAAAATCATC-ATTATCATTTATCCTAATGAGGAGAAAGCATTTAT
* * *
67985 TGTGCCTAATC-AAAACATGAATAAAGATCATT-CATAGAATCCATGTTTGTCTCATTTTAGACA
378 AGTGCCTAATCGAAAA-ATGAATAAAGATCATTAC-TAGAATCAATGTTTATCTCA-TTTA-ACA
* * * * * * * *
68048 CGTACTTGGACTTTAAAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATAT
439 AGAACCTAGACTTCAAAAAAATTGGTAGGAAGAAAGCCTTTATTGCGAAACCAAAGCATCAATAT
* * * *
68113 CGTGTATTATTACGAGAAGACTATGCTTATGGTACCTAATCTTGAAA-AAATAGGGATTA-TAAT
504 CATGTATCATTACGAGAAGACTATGCTTATGCTACCTAATCTTGAAATAAATAGGGATTAGTAAG
* * * * *
68176 GGTATTCATG-TTTGTCTTTTTTGAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAAAAAA
569 GGGATTCATGCATT-TC-TATTTAAGAGACAAACTTAGATTCTATCAAAAACGGTTGAAAAAAAA
* *
68240 GCAGTTT-TTGCCACACCAAAGCATCAATGTCATGTATCCTAATGAACAAAATGTGTTTTTAGTT
632 GC-GTTTCTTGCCACACCAAAGCATCAATGTCATGTATCCTAATGAACAAAATGTGCTTTTAGTA
*
68304 CCCAATATTGAAAAAAATAGAGACTGTTATGAGAATCAATG-CTTACCTTATTTAAGGGATGAAC
696 CCCAATATTGAAAAAAATAGAGACTGTTATGAGAATCAA-GACCTACCTTATTTAAGGGATGAAC
*
68368 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA-TGTCAATGCAAAAGAAAATCGTAAATATCAT
760 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTGTC-ATGCAAAAGAAAATCATAAATATCAT
* * *
68432 TTATCCTAATGACGAGAATGTGTTTATAGTGCCTAATCGTAAAATGAATGCAGATCATTCCTAGA
824 TTATCCCAATGACGAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCATTCCTAGA
* *
68497 ATCCATGTTTGTCTCATTTAAGACACGAA-TTAATACTTTACAAAATTT
889 ATCCATGTTTGTCTCATTTAAGACACGAACTT-AGACTTTACAAAAATT
* * * * *
68545 GGTGGGAAGAAAGCCTTTCGTGCGAATCCAAGGCATCAATATTGTGTATCCTTATGAGAAGACTA
1 GGTGGGAAGAAAGCCTTTCGTACAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTA
68610 TGTTTATGGTGCCTAATCTTGTAACGAATGGGTATTCATGTTTGTCTTATTTATGAGACAAACTT
66 TGTTTATGGTGCCTAATCTTGTAACGAATGGGTATTCATGTTTGTCTTATTTATGAGACAAACTT
68675 TGATTCAGTCAAAAACGGTTGAAAGAAAGCATTTTTTACGACACCAAAGCATTAATGTCATGTAT
131 TGATTCAGTCAAAAACGGTTGAAAGAAAGCATTTTTTACGACACCAAAGCATTAATGTCATGTAT
*
68740 CCTAATGAAAAGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTGTTACGAAAACCA
196 CCTAAAGAAAAGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTGTTACGAAAACCA
68805 ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCA
261 ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCA
*
68870 AGCAAAAGAAAATCATCATTATCATTTATCCTAATGAGGAGAAAGCATTTATAGTGCCTAATCGC
326 AGCAAAAGAAAATCATCATTATCATTTATCCTAATGAGGAGAAAGCATTTATAGTGCCTAATCGA
* *
68935 AAAATGAATGAAGATCATTACTAGAATCAATGTTTATCTCATTTAACAAGAACCTAGACTTCGAA
391 AAAATGAATAAAGATCATTACTAGAATCAATGTTTATCTCATTTAACAAGAACCTAGACTTCAAA
* * * *
69000 AAAATTGGTAGGAAGAAAGCCTTTATTGCGACACCAAAGCGTCAATATCATGTATCCTTATGAGA
456 AAAATTGGTAGGAAGAAAGCCTTTATTGCGAAACCAAAGCATCAATATCATGTATCATTACGAGA
* * * *
69065 AGACTATGTTTATGCTACCTAATCTTGAAATGAATGGGGATTAGTAGGGGGATTCATGCATTTCT
521 AGACTATGCTTATGCTACCTAATCTTGAAATAAATAGGGATTAGTAAGGGGATTCATGCATTTCT
* ** * * * *
69130 ATTTAAGAGACAAACTTAGATTCTATCAAAAATGGTTGAAAGGAATGCTTTTCTTGCTACAGCAA
586 ATTTAAGAGACAAACTTAGATTCTATCAAAAACGGTTGAAAAAAAAGCGTTTCTTGCCACACCAA
* ** * * * *
69195 AGCATCAATGTCTTGTATCCTAATGAAGGAAATGTGCTTTTGGTACCCAATCTTGAAAAGAATTG
651 AGCATCAATGTCATGTATCCTAATGAACAAAATGTGCTTTTAGTACCCAATATTGAAAAAAATAG
* * *
69260 AGACTGTTATGAGAATCAAGACCTGCCTTATTTAGGGGATGAATTTTGATTTTAAGGAAAATAGG
716 AGACTGTTATGAGAATCAAGACCTACCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG
* * * * * *
69325 GCAAAGAAAAGATTTTCATGTAAAAGAAAATCATCAATTTCGTTTATCCCAATGAGGAGAATGTG
781 GCAAAGAAAAGATTGTCATGCAAAAGAAAATCATAAATATCATTTATCCCAATGACGAGAATGTG
* * * *
69390 TTTATAGTGCTTAATCATAAAATGAATGAAGTTCATTCCTAGAATCCTTGTTTGTCTCATTTGAG
846 TTTATAGTGCCTAATCATAAAATGAATGAAGATCATTCCTAGAATCCATGTTTGTCTCATTTAAG
69455 ACACGAACTTAGACTTTACAAAAATT
911 ACACGAACTTAGACTTTACAAAAATT
* * *
69481 GGTGGGAAGATAGCCTTTCTTACAAAACCAAAGCATCAGTATCGTGTATCCTTATGAGAAGACTA
1 GGTGGGAAGAAAGCCTTTCGTACAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTA
*
69546 TGTTTATGGTGCTTAATCTTG
66 TGTTTATGGTGCCTAATCTTG
69567 AAAAGAATAA
Statistics
Matches: 915, Mismatches: 96, Indels: 34
0.88 0.09 0.03
Matches are distributed among these distances:
935 102 0.11
936 626 0.68
937 98 0.11
938 6 0.01
940 1 0.00
942 1 0.00
946 2 0.00
948 79 0.09
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (936 bp):
GGTGGGAAGAAAGCCTTTCGTACAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTA
TGTTTATGGTGCCTAATCTTGTAACGAATGGGTATTCATGTTTGTCTTATTTATGAGACAAACTT
TGATTCAGTCAAAAACGGTTGAAAGAAAGCATTTTTTACGACACCAAAGCATTAATGTCATGTAT
CCTAAAGAAAAGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTGTTACGAAAACCA
ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCA
AGCAAAAGAAAATCATCATTATCATTTATCCTAATGAGGAGAAAGCATTTATAGTGCCTAATCGA
AAAATGAATAAAGATCATTACTAGAATCAATGTTTATCTCATTTAACAAGAACCTAGACTTCAAA
AAAATTGGTAGGAAGAAAGCCTTTATTGCGAAACCAAAGCATCAATATCATGTATCATTACGAGA
AGACTATGCTTATGCTACCTAATCTTGAAATAAATAGGGATTAGTAAGGGGATTCATGCATTTCT
ATTTAAGAGACAAACTTAGATTCTATCAAAAACGGTTGAAAAAAAAGCGTTTCTTGCCACACCAA
AGCATCAATGTCATGTATCCTAATGAACAAAATGTGCTTTTAGTACCCAATATTGAAAAAAATAG
AGACTGTTATGAGAATCAAGACCTACCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG
GCAAAGAAAAGATTGTCATGCAAAAGAAAATCATAAATATCATTTATCCCAATGACGAGAATGTG
TTTATAGTGCCTAATCATAAAATGAATGAAGATCATTCCTAGAATCCATGTTTGTCTCATTTAAG
ACACGAACTTAGACTTTACAAAAATT
Found at i:69327 original size:473 final size:473
Alignment explanation
Indices: 67597--69625 Score: 2593
Period size: 473 Copynumber: 4.3 Consensus size: 473
67587 TCTCATTTAA
* * ** * * *
67597 GGTGGGAAGAAAGCTTTTCCTATGTAACCAAAGCATTAATATCGTGTATCCTTATGAGAACACTA
1 GGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTA
* * * ***
67662 TGTTTATGGTGCTTAATCCTAAAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTA
66 TGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTA-TA-GGGGATTCATGTTTGTCTTATTTA
* *
67727 TGAGACAAACTTTGATTCAGTCAAAAACGGTTGAAAGAAAGCATTTTTTACGACACCAAAGCATT
129 AGAGACAAACTTTGATTCAGTCAAAAACGGTTGAAAGAAAGCATTTTTTACGACACCAAAGCATC
*
67792 AATGTCATGTATCCTAAAGAAAAGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTG
194 AATGTCATGTATCCTAATGAAAAGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTG
67857 TTACGAAAACCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
259 TTACGAAAACCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* *
67922 AAAAGATTTTCATGCAAAA-AAAATCATCAATTTCATTTATCCTAATGAGGAGAATGTGTTTATT
324 AAAAGATTTTCAAGCAAAAGAAAATCATCAATTTCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * *
67986 GTGCCTAATC-AAAACATGAATAAAGATCATTCATAGAATCCATGTTTGTCTCATTTTAGACACG
389 GTGCCTAATCGTAAA-ATGAATGAAGATCATTCCTAGAATCCATGTTTGTCTCATTTAAGACACG
* * *
68050 TACTTGGACTTTAAAAAAATT
453 AACTTAGACTTTACAAAAATT
* ** *
68071 GGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATTATTACGAGAAGACTA
1 GGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTA
* * * * * * *
68136 TGCTTATGGTACCTAATCTTGAAAA-AATAGGGATTATAATGGTATTCATGTTTGTCTTTTTTGA
66 TGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAT-AGGGGATTCATGTTTGTCTTATTTAA
* * * *
68200 GAGACAAACTTTGATTCTA-TCAAAAACGGTTGAAAAAAAAGCAGTTTTTGCCACACCAAAGCAT
130 GAGACAAACTTTGATTC-AGTCAAAAACGGTTG-AAAGAAAGCATTTTTTACGACACCAAAGCAT
* * *
68264 CAATGTCATGTATCCTAATGAACAA-AATGTGTTTTTAGTTCCCAATATTGAAAAAAATAGAGAC
193 CAATGTCATGTATCCTAATGAA-AAGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGAC
* * * *
68328 TGTTATGAGAATCAATGCTTACCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAA
257 TGTTACGAAAACCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAA
* * * * *
68393 AGAAAAGA-TGTCAATGCAAAAGAAAATCGTAAATATCATTTATCCTAATGACGAGAATGTGTTT
322 AGAAAAGATTTTCAA-GCAAAAGAAAATCATCAATTTCATTTATCCTAATGAGGAGAATGTGTTT
*
68457 ATAGTGCCTAATCGTAAAATGAATGCAGATCATTCCTAGAATCCATGTTTGTCTCATTTAAGACA
386 ATAGTGCCTAATCGTAAAATGAATGAAGATCATTCCTAGAATCCATGTTTGTCTCATTTAAGACA
* *
68522 CGAA-TTAATACTTTACAAAATTT
451 CGAACTT-AGACTTTACAAAAATT
* * * *
68545 GGTGGGAAGAAAGCCTTTCGTGCGAATCCAAGGCATCAATATTGTGTATCCTTATGAGAAGACTA
1 GGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTA
* * *
68610 TGTTTATGGTGCCTAATCTTGTAACGAAT-GGG----T-----ATTCATGTTTGTCTTATTTATG
66 TGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTATAGGGGATTCATGTTTGTCTTATTTAAG
*
68665 AGACAAACTTTGATTCAGTCAAAAACGGTTGAAAGAAAGCATTTTTTACGACACCAAAGCATTAA
131 AGACAAACTTTGATTCAGTCAAAAACGGTTGAAAGAAAGCATTTTTTACGACACCAAAGCATCAA
68730 TGTCATGTATCCTAATGAAAAGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTGTT
196 TGTCATGTATCCTAATGAAAAGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTGTT
68795 ACGAAAACCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAA
261 ACGAAAACCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAA
* **
68860 AAGATTTTCAAGCAAAAGAAAATCATC-ATTATCATTTATCCTAATGAGGAGAAAGCATTTATAG
326 AAGATTTTCAAGCAAAAGAAAATCATCAATT-TCATTTATCCTAATGAGGAGAATGTGTTTATAG
* * * * *
68924 TGCCTAATCGCAAAATGAATGAAGATCATTACTAGAATCAATGTTTATCTCATTT-A-ACAAGAA
390 TGCCTAATCGTAAAATGAATGAAGATCATTCCTAGAATCCATGTTTGTCTCATTTAAGACACGAA
* *
68987 CCTAGACTTCGA-AAAAATT
455 CTTAGACTT-TACAAAAATT
* * * * *
69006 GGTAGGAAGAAAGCCTTTATTGCGACACCAAAGCGTCAATATCATGTATCCTTATGAGAAGACTA
1 GGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTA
* * * *
69071 TGTTTATGCTACCTAATCTTGAAATGAATGGGGATTAGTAGGGGGATTCATGCATT-TC-TATTT
66 TGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTA-TA-GGGGATTCATG-TTTGTCTTATTT
* * * * * *
69134 AAGAGACAAACTTAGATTCTA-TCAAAAATGGTTGAAAGGAATGC-TTTTCTTGCTACAGCAAAG
128 AAGAGACAAACTTTGATTC-AGTCAAAAACGGTTGAAA-GAAAGCATTTT-TTACGACACCAAAG
* * * * * *
69197 CATCAATGTCTTGTATCCTAATG-AAGGAAATGTGCTTTTGGTACCCAATCTTGAAAAGAATTGA
190 CATCAATGTCATGTATCCTAATGAAAAG-AATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGA
* * * * * *
69261 GACTGTTATGAGAATCAA-GACCTGCCTTATTTAGGGGATGAATTTTGATTTTAAGGAAAATAGG
254 GACTGTTACGAAAACCAATG-CTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG
* * * *
69325 GCAAAGAAAAGATTTTCATGTAAAAGAAAATCATCAATTTCGTTTATCCCAATGAGGAGAATGTG
318 GCAAAGAAAAGATTTTCAAGCAAAAGAAAATCATCAATTTCATTTATCCTAATGAGGAGAATGTG
* * * * *
69390 TTTATAGTGCTTAATCATAAAATGAATGAAGTTCATTCCTAGAATCCTTGTTTGTCTCATTTGAG
383 TTTATAGTGCCTAATCGTAAAATGAATGAAGATCATTCCTAGAATCCATGTTTGTCTCATTTAAG
69455 ACACGAACTTAGACTTTACAAAAATT
448 ACACGAACTTAGACTTTACAAAAATT
* * * *
69481 GGTGGGAAGATAGCCTTTCTTACAAAACCAAAGCATCAGTATCGTGTATCCTTATGAGAAGACTA
1 GGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTA
* ** ***
69546 TGTTTATGGTGCTTAATCTTGAAAAGAATAAGGATT-TGCATGACTATTCATGTTTGTCTTATTT
66 TGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAT--A-GGGGATTCATGTTTGTCTTATTT
69610 AAGAGACAAACTTTGA
128 AAGAGACAAACTTTGA
69626 CTCTATTAAA
Statistics
Matches: 1344, Mismatches: 170, Indels: 80
0.84 0.11 0.05
Matches are distributed among these distances:
461 98 0.07
462 10 0.01
463 247 0.18
464 53 0.04
467 1 0.00
470 1 0.00
472 98 0.07
473 416 0.31
474 276 0.21
475 124 0.09
476 20 0.01
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (473 bp):
GGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTA
TGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTATAGGGGATTCATGTTTGTCTTATTTAAG
AGACAAACTTTGATTCAGTCAAAAACGGTTGAAAGAAAGCATTTTTTACGACACCAAAGCATCAA
TGTCATGTATCCTAATGAAAAGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTGTT
ACGAAAACCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAA
AAGATTTTCAAGCAAAAGAAAATCATCAATTTCATTTATCCTAATGAGGAGAATGTGTTTATAGT
GCCTAATCGTAAAATGAATGAAGATCATTCCTAGAATCCATGTTTGTCTCATTTAAGACACGAAC
TTAGACTTTACAAAAATT
Found at i:69978 original size:605 final size:597
Alignment explanation
Indices: 69036--70824 Score: 1940
Period size: 605 Copynumber: 3.0 Consensus size: 597
69026 TGCGACACCA
* * * *
69036 AAGCGTCAATATCATGTATCCTTATGAGAAGACTATGTTTATGCTACCTAATCTTGAAATGAATG
1 AAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTAAG-TGCCTAATCCTGAAATGAATG
* ** * *
69101 GGGATTAGTAGGGGGATTCATGCATT-TC-TATTTAAGAGACAAACTTAGATTCTATCAAAAATG
65 GGGATTAGTAAGGCTATTCATG-TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATG
* * * * *
69164 GTTGAAAGGAATGCTTTTCTTGCTACAGCAAAGCATCAATGTC-TTGTATCCTAATGAAGGAAAT
129 GTGGAAAGAAAAGC-TTTCTTGCGACACCAAAGCATCAATGTCATT-TATCCTAATGAAGGAAAT
* * * * *
69228 GTGCTTTTGGTACCCAATCTTGAAAAGAATTGAGACTGTTATGAGAATC-AAGACCTGCCTTATT
192 GTG-TTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGA-TTGTCTTATT
* *
69292 TAGGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGTAAAAGAAAATC
255 TAGGGGATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATC
* * * * *
69357 ATCAATTTCGTTTATCCCAATGAGGAGAATGTGTTTATAGTGCTTAATCATAAAATGAATGAAGT
320 ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGT
* * *
69422 TCATTCCTAGAATCCTTGTTTGTCTCATTTGAGACACGAACTTAGACTTTACAAAAATTGGTGGG
385 TCATTCCTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGG
* **
69487 AAGATAGCCTTTCTTACAAAACCAAAGCATCAGTATCGTGTATCCTTATGAGAAGACTATGTTTA
450 AAGAAAGCCTTT-TTATGAAACCAAAGCATCAGTATCGTGTATCCTTATGAGAAGACTATGTTTA
69552 TGGTGCTTAATCTTGAAAAGAATAAGGATTTGCATGACTATTCATGTTTGTCTTATTTAAGAGAC
514 TGGTGC-TAATCTTGAAAAGAATAAGGATTTG-ATGACTATTCATGTTTG-CTTATTTAAGAGA-
*
69617 AAACTTTGACTCTATTAAAAATG
575 AAACTTTGACTCTATCAAAAATG
* *** * * * *
69640 ATGCATTGGTATCATTTATCCTTATGAGAAGACTTTGTTTACAGTGCCTCATCCTGAGATGAATG
1 AAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTA-AGTGCCTAATCCTGAAATGAATG
* *
69705 GGGATTAGTAAGACTATTCATGTTTGTCTTTTTTGAAGAGACAAACTTTGATTCTATCAAAAATG
65 GGGATTAGTAAGGCTATTCATGTTTGTCTTATTT-AAGAGACAAACTTTGATTCTATCAAAAATG
* *
69770 GTGGAAAGAAAAGCATTTCTTGCGACACCAAAGCATCAATGTCATTTATCCTAAAGAAGGGAATG
129 GTGGAAAGAAAAGC-TTTCTTGCGACACCAAAGCATCAATGTCATTTATCCTAATGAAGGAAATG
* *
69835 TGTTCTTGGTTCCCAATCTTGAAAA-AATGGAGTCTGTTATGAGAATCGATGATTGTCATATTTA
193 TGTT-TTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGATTGTCTTATTTA
* *
69899 AGGGATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
257 GGGGATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCAT
* * ** * *
69964 CAATATCTTTTATCCTAATAAGGAGAATGCATTTATAGTGCCTAACCACAAAATGAATGAAGATC
322 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGTTC
** * * * *
70029 ATTAGTTGAATCCATGTTTTTCTCATTTAAGGCACAAACTTAGACTTTATAAAAATTGGTGGGAA
387 ATTCCTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAA
* * * *
70094 GAAAGCCTTTGTTATGAAACCAAAGCATCAATATCGTGTATCCTTA-CAG--GAATCTGTGTT-T
452 GAAAGCCTTT-TTATGAAACCAAAGCATCAGTATCGTGTATCCTTATGAGAAGACTATGT-TTAT
* * * * * *** * * * *
70155 -GT-CTCAT-TTG---AG-GTATGAACTT-A-GACT-TTACAAAATTGGTGA--GAA-A-AAAGC
515 GGTGCTAATCTTGAAAAGAATAAGGATTTGATGACTATT-CATGTTTGCTTATTTAAGAGAAA-A
***
70206 CTTT--CT-TA-CAAAAGCA
578 CTTTGACTCTATCAAAAATG
* * * ** *
70222 AAGCATCAATATCATGTATTCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAATA
1 AAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTA-AGTGCCTAATCCTGAAATGAATG
** **
70287 GGGATTAGTGTGGCTATTTCATGTTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATG
65 GGGATTAGTAAGGCTA-TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATG
* * *
70352 GTGGAAAGAAAAGCTTTACTTACGACACCAAAGCATCAATGTCATTTATCTTAATGAAGGAAACG
129 GTGGAAAGAAAAGCTTT-CTTGCGACACCAAAGCATCAATGTCATTTATCCTAATGAAGGAAATG
* * * * * *
70417 TGTTTTGGGTTCCCAATCTTTAAAAGACTGGGGACTATTACGAGAATCGATGTTTGTCTTATTTA
193 TGTTTT-GGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGATTGTCTTATTTA
* *
70482 GGGGATTAA--TTT-TTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCTT
257 GGGGATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCAT
* * * *
70544 GAATATCATTTATTCTAATGA-GACTAATGTGTTTAAAGTGCCTAATCACAAAATGAATGAAGAT
322 CAATATCATTTATCCTAATGAGGA-GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG-T
* * * * * *
70608 CCTTTCC-GGAATCCATGTTTGTCTCATTTGAGGCATAAACTTAGACTTTACAAAAACTGGTGAG
385 TCATTCCTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGG
* * * *
70672 AA-AAAGGCCTTTTGTGTGAAACCAAAGCAT-TGATCTCATGTAT-CTTAATGAGAAGACTATGT
450 AAGAAA-GCCTTTT-TATGAAACCAAAGCATCAG-TATCGTGTATCCTT-ATGAGAAGACTATGT
* * **
70734 TTATGGTGCATAATCTT-AAAACGAATAGGGATTAGTATGGGTATTCATGTTTGCCTTATTTAAG
511 TTATGGTGC-TAATCTTGAAAA-GAATAAGGATTTG-ATGACTATTCATGTTTG-CTTATTTAAG
*
70798 AGAAAAACTTTGATTCTATCAAAAATG
572 AG-AAAACTTTGACTCTATCAAAAATG
70825 GTAGAAAGAA
Statistics
Matches: 971, Mismatches: 167, Indels: 95
0.79 0.14 0.08
Matches are distributed among these distances:
579 9 0.01
580 180 0.19
581 13 0.01
582 174 0.18
583 65 0.07
584 4 0.00
585 3 0.00
586 8 0.01
587 3 0.00
588 2 0.00
589 1 0.00
590 5 0.01
591 14 0.01
592 1 0.00
593 1 0.00
594 13 0.01
595 6 0.01
597 2 0.00
598 4 0.00
599 7 0.01
600 4 0.00
601 3 0.00
602 9 0.01
603 9 0.01
604 73 0.08
605 249 0.26
606 107 0.11
607 2 0.00
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (597 bp):
AAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTAAGTGCCTAATCCTGAAATGAATGG
GGATTAGTAAGGCTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGT
GGAAAGAAAAGCTTTCTTGCGACACCAAAGCATCAATGTCATTTATCCTAATGAAGGAAATGTGT
TTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGATTGTCTTATTTAGGGG
ATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAAT
ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTC
CTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAA
GCCTTTTTATGAAACCAAAGCATCAGTATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCT
AATCTTGAAAAGAATAAGGATTTGATGACTATTCATGTTTGCTTATTTAAGAGAAAACTTTGACT
CTATCAAAAATG
Found at i:71392 original size:32 final size:30
Alignment explanation
Indices: 71356--71414 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
71346 GAAATCAAAT
71356 ACAAAGAGCT-TAGAAAAATAATAACAATATGA
1 ACAAA-AGCTCTAGAAAAAT-ATAA-AATATGA
*
71388 ACAAAAGCTCTTGAAAAATATAAAATA
1 ACAAAAGCTCTAGAAAAATATAAAATA
71415 CTTTGATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 4 0.16
31 8 0.32
32 13 0.52
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.20
Consensus pattern (30 bp):
ACAAAAGCTCTAGAAAAATATAAAATATGA
Found at i:71731 original size:32 final size:34
Alignment explanation
Indices: 71674--71738 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 34
71664 TACAAGCCAA
*
71674 TGTATCGATACAATTTTTTTGTGTATCAATACAT
1 TGTATCGATACAATTATTTTGTGTATCAATACAT
*
71708 TGTATCGATAC-A-TATTTTGTGTATCGATACA
1 TGTATCGATACAATTATTTTGTGTATCAATACA
71739 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 17 0.59
33 1 0.03
34 11 0.38
ACGTcount: A:0.29, C:0.12, G:0.14, T:0.45
Consensus pattern (34 bp):
TGTATCGATACAATTATTTTGTGTATCAATACAT
Found at i:71815 original size:20 final size:20
Alignment explanation
Indices: 71769--71842 Score: 78
Period size: 20 Copynumber: 3.6 Consensus size: 20
71759 ATCCCAATGA
***
71769 CATGTATCGATACATCTTTTT
1 CATGTATCGATACAT-TGAAT
71790 CATGTATCGATACATTGCAA-
1 CATGTATCGATACATTG-AAT
*
71810 CATGTATCGATACTTTGAAT
1 CATGTATCGATACATTGAAT
*
71830 TATGTATCGATAC
1 CATGTATCGATAC
71843 TTTTAAGGGT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
19 2 0.04
20 29 0.63
21 15 0.33
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.39
Consensus pattern (20 bp):
CATGTATCGATACATTGAAT
Found at i:73811 original size:21 final size:20
Alignment explanation
Indices: 73782--73824 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
73772 AACTAGTGTG
* *
73782 GGGACTGCCCGGTTGTGACCT
1 GGGACTG-CCGGTCGCGACCT
*
73803 GGGAGTGCCGGTCGCGACCT
1 GGGACTGCCGGTCGCGACCT
73823 GG
1 GG
73825 TGGTGCTGCC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.09, C:0.28, G:0.44, T:0.19
Consensus pattern (20 bp):
GGGACTGCCGGTCGCGACCT
Found at i:74273 original size:13 final size:13
Alignment explanation
Indices: 74255--74292 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
74245 ATAATCCCCC
74255 TGTATCGATACAG
1 TGTATCGATACAG
*
74268 TGTATCGATACAT
1 TGTATCGATACAG
*
74281 TGTATCAATACA
1 TGTATCGATACA
74293 AAGAAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:74310 original size:33 final size:33
Alignment explanation
Indices: 74268--74348 Score: 153
Period size: 33 Copynumber: 2.5 Consensus size: 33
74258 ATCGATACAG
74268 TGTATCGATACATTGTATCAATACAAAGAAAAA
1 TGTATCGATACATTGTATCAATACAAAGAAAAA
*
74301 TGTATCGATACATTGTATCGATACAAAGAAAAA
1 TGTATCGATACATTGTATCAATACAAAGAAAAA
74334 TGTATCGATACATTG
1 TGTATCGATACATTG
74349 AATTTCCAGA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 47 1.00
ACGTcount: A:0.43, C:0.12, G:0.15, T:0.30
Consensus pattern (33 bp):
TGTATCGATACATTGTATCAATACAAAGAAAAA
Found at i:74319 original size:13 final size:13
Alignment explanation
Indices: 74301--74325 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74291 CAAAGAAAAA
74301 TGTATCGATACAT
1 TGTATCGATACAT
74314 TGTATCGATACA
1 TGTATCGATACA
74326 AAGAAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:76426 original size:15 final size:15
Alignment explanation
Indices: 76406--76436 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
76396 ATTTCGTTTG
*
76406 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
76421 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
76436 G
1 G
76437 GATATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:78268 original size:21 final size:21
Alignment explanation
Indices: 78239--78283 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
78229 AAGTTTTTAT
*
78239 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
78259 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
78281 TTT
1 TTT
78284 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:80201 original size:32 final size:30
Alignment explanation
Indices: 80165--80223 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
80155 GAAATCAAAT
80165 ACAAAGAGCT-TAGAAAAATTATAACAATATGA
1 ACAAA-AGCTCTAGAAAAA-TATAA-AATATGA
*
80197 ACAAAAGCTCTTGAAAAATATAAAATA
1 ACAAAAGCTCTAGAAAAATATAAAATA
80224 CTTTGATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 4 0.16
31 9 0.36
32 12 0.48
ACGTcount: A:0.58, C:0.10, G:0.10, T:0.22
Consensus pattern (30 bp):
ACAAAAGCTCTAGAAAAATATAAAATATGA
Found at i:80540 original size:32 final size:34
Alignment explanation
Indices: 80483--80547 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 34
80473 TACAAGCCAA
*
80483 TGTATCGATACAATTTTTTTGTGTATCAATACAT
1 TGTATCGATACAATTATTTTGTGTATCAATACAT
*
80517 TGTATCGATAC-A-TATTTTGTGTATCGATACA
1 TGTATCGATACAATTATTTTGTGTATCAATACA
80548 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 17 0.59
33 1 0.03
34 11 0.38
ACGTcount: A:0.29, C:0.12, G:0.14, T:0.45
Consensus pattern (34 bp):
TGTATCGATACAATTATTTTGTGTATCAATACAT
Found at i:80624 original size:20 final size:20
Alignment explanation
Indices: 80578--80651 Score: 78
Period size: 20 Copynumber: 3.6 Consensus size: 20
80568 ATCCCAATGA
***
80578 CATGTATCGATACATCTTTTT
1 CATGTATCGATACAT-TGAAT
80599 CATGTATCGATACATTGCAA-
1 CATGTATCGATACATTG-AAT
*
80619 CATGTATCGATACTTTGAAT
1 CATGTATCGATACATTGAAT
*
80639 TATGTATCGATAC
1 CATGTATCGATAC
80652 TTTTAAGGGT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
19 2 0.04
20 29 0.63
21 15 0.33
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.39
Consensus pattern (20 bp):
CATGTATCGATACATTGAAT
Found at i:82715 original size:476 final size:474
Alignment explanation
Indices: 80936--85491 Score: 3455
Period size: 476 Copynumber: 9.5 Consensus size: 474
80926 ACAAGAATAA
** * * *
80936 ATGCTTGCCTTATTTTTGGGATGACCTTTAATTTTAAGGAAAATAGGGCGAAGAAAAGA-TTTCC
1 ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAGTTT-C
* * *
81000 ATGCAAAAAAAAATCACCAGTATCATTTATCCTAAAAAGGAGAATGTGTTTATAGTGCCTAATCA
65 ATGCAAAAGAAAATCATCAGTATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * * *
81065 TAAAATGAATGAAGATCGTTACTAGAATCCATGTTTGTCTTAATTGAGGTACGAACTTAGACTTT
130 CAAAATGAATGAAGATCATTACCAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * ** * *
81130 ACAAAAATTGGTGGGAAGAAATCCTTTCTTGCGTAACCAAAGTGTCAATATCGTGTATCGTTATG
195 ACAAAAATTGGTGGGAAGAAAGCCTTTCTTGAGAAACCAAAGCATCAATATCATGTATCCTTATG
* * *
81195 AGAATACTATGGTTT-TGGTGCCTAATCCTAAAAAGAATGGGGATTAGCATGACTATTCATGTTT
260 AGAAGACTAT-GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA-TATTCATGTTT
* * * * **
81259 GTCTTATTTAAGAGACAACCTTTGATTCTATTAAAAATGGTGGAAAGAAAACCTTTTCCTGAAAC
323 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAC
* * * * *
81324 CCCAAAGCATCAATGTCTTGTATCCTAATAAAGAGAATGTGCTTTTGGTTCCCAATATTGAAAAG
388 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATATTGAAAAG
*
81389 AATGGAGACTGTTACT-AGAATC
453 AATGAAGACTGTTA-TAAGAATC
* *
81411 A-GCACTTGCCTTATTTAAGGGATAAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGAGTTT
1 ATG--CTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAGTTT
* * * * * *
81475 CGTACAATAGAAAATCATCACTATCATTTATCCTAATGAGGAGAACGTGTTTATAGTGCCTAATC
64 CATGCAAAAGAAAATCATCAGTATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATC
* * * *
81540 ACAAAATGAATGAAGATCATCACCATAATCCATTTTTGTCTCATTTGAGGTACGAACTTAGACTT
129 ACAAAATGAATGAAGATCATTACCAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTT
** *
81605 TACAAAAATTTATGGGAAGAAAGCCTTTCTTAAGAAACCAAAGCATCAATATCATGTATCCTTAT
194 TACAAAAATTGGTGGGAAGAAAGCCTTTCTTGAGAAACCAAAGCATCAATATCATGTATCCTTAT
* * * *
81670 GAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAAAATGGGGATAAGTATGATTATACGTGTTT
259 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA-TATTCATGTTT
* * ** * * *
81734 GTCTTATTTAAGAGATAAACTTTGATTTTGCCAAAAATGGCGGAAAGAAAAGCATTTCTTGCGAT
323 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAC
*
81799 AGCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATATTGAAAAG
388 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATATTGAAAAG
* * *
81864 AATGGAGACTATTATGAGAATC
453 AATGAAGACTGTTATAAGAATC
* * * ** *
81886 AATGCTTGCCTTACTTAAGGGATGAACCTTGATTTTAAGGAGAATAGGATAAAGAAAAGAGTTCC
1 -ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAGTTTC
* *
81951 ATGCCAAAGAAAATCATCAGT-TCATTTATCCTAAAGAGGAGAATGTGTTCATAGTGCCTAATCA
65 ATGCAAAAGAAAATCATCAGTATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * *
82015 CAAAATGAATGAAGATCATTTCCATAATCCATTTTTGTCTCATTTGAGGCACGAACTTATACTTC
130 CAAAATGAATGAAGATCATTACCAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * *
82080 ACAAAAATTGGTGAGAAGAAAGCCTTTCTTGAGAAACCAAAACATCAATATCATGTATCCTAATG
195 ACAAAAATTGGTGGGAAGAAAGCCTTTCTTGAGAAACCAAAGCATCAATATCATGTATCCTTATG
* * * *
82145 ACAAGTCTATGTTTATGGTCCCTAATCCTGAAAAGAATGGGGATTAGCATTTG-TATTCATGTTT
260 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG--TATGATATTCATGTTT
* *
82209 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGTTGGAAAGAAAACCTTTTCTTGCGAC
323 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAC
* * *
82274 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAAGTGTTTTTGGTTCCCAATCTTTG-GAA
388 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAAT-ATTGAAAA
* *
82338 GAATCAAGATTGTTATAAGAATC
452 GAATGAAGACTGTTATAAGAATC
* * * * *
82361 GATGCTTGTCTTTTTTAAAGGATTAACTTTGATTTTAAGGAGAATAGGGCAAAGAAAAGAGTTTC
1 -ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAGTTTC
* * *
82426 ATGGAAAAGAAAATCATTAGTATCATATATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCA
65 ATGCAAAAGAAAATCATCAGTATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCA
* * *
82491 CAAAATGAACGAAGATCATTACCA-AAGTCCCTGTTTGTCTCATTTGAGGCACGAACTTAAACTT
130 CAAAATGAATGAAGATCATTACCAGAA-TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTT
* * * * * ** *
82555 TACAAAATTTGGTGGGAAGAAAGCCTTTTTTGCGTAACCAAAGCATTAGCATCATGTATCCTTTT
194 TACAAAAATTGGTGGGAAGAAAGCCTTTCTTGAGAAACCAAAGCATCAATATCATGTATCCTTAT
* * * * *
82620 GAGAAAACTATGCTTATGGTGCCTAATCCTGAAAAGAATAGAGATTAGTGTGACTATTCATGTTT
259 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA-TATTCATGTTT
* * * *
82685 ATCTTATTTAGGAGGCAAACATTT-ATTCTATCAAAAATGGTGGAAAGAAAAGCATTTCTTGCGA
323 GTCTTATTTAAGAGACAAAC-TTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGA
* *
82749 CACCAAAGCCA-CAATGTCATGTATCTTAATGAAGGGAATCTGTTTTTGGTTCCCAATATTGAAA
387 CACCAAAG-CATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATATTGAAA
* *
82813 AGAA-GAGAGACTGCTACAAGAATC
451 AGAATGA-AGACTGTTATAAGAATC
* ** * *
82837 TTTGCTTGTATTATTTAAGGGATGAATTTTGATTTTATGGAAAATAGGGCAAAGAAAAGA-TTTC
1 -ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAGTTT-
* * * * ** *
82901 CAAGCAAAAGAAAATCATCAATACCATTTATCCGAATA-AGGAGAATGCATTTGTAGTGCCTAAT
64 CATGCAAAAGAAAATCATCAGTATCATTTATCCTAA-AGAGGAGAATGTGTTTATAGTGCCTAAT
* * * * * * *
82965 CGCAAAATGAATGAAGATCATTACTAGAATCAATGTTTATCTCATTTGA-GAATGAA-TCTGGAC
128 CACAAAATGAATGAAGATCATTACCAGAATCCATGTTTGTCTCATTTGAGGCACGAACT-TAGAC
* * * * * ** * * *
83028 TTCGA-AAAAATT-GTAGGAAGAAAGCCTTTATTGTGACACCAAAGTGTCACTATCGTGTATTCT
192 TT-TACAAAAATTGGTGGGAAGAAAGCCTTTCTTGAGAAACCAAAGCATCAATATCATGTATCCT
* * * * * * * ** * *
83091 TATTAGAATACTATGTTTATGATGCCTACTCTTGAAATGAATGGGGATTAGTAGGGGATTTATGC
256 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGATATTCATGT
* * * * * ** *
83156 TTGTCTTATTTACGAGGCAAACTTAGATTCTATCAAAAATGGTTGAAAGGACTGCTTTTCTTGCA
321 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCG
* * * * * *
83221 ATAGCAAAGCATCAATGTCTTGTATCCTAATGAAGGAAATATGCTTGCCTTATTTAAGGGAT--G
386 ACACCAAAGCATCAATGTCATGTATCCTAATGAAGG-GA-ATG--TG--TT-TTT---GGTTCCC
* **** * **
83284 AATTTTG-ATTTTATGGAA-AATAGGGCA-AAGAA--
441 AATATTGAAAAGAAT-GAAGACT--GTTATAAGAATC
* * ** ** * * ** * **** * * *
83316 AAGATT---TTCATGCAAAAGA-AAATCATCAATATCATTTATCCTAATAAGG---AG-AATGTG
1 ATGCTTGCCTT-ATTTAAGGGATGAA-CTTTGAT-T--TTAAGGAAAATAGGGCAAAGAAAAGAG
* * * * ** * ** *
83373 CTTAT-AGTGCCTAATCATAAAATGAATGAAG-ATCA--T-TCCTAGAA-TCGTGTTTGTCTCAT
61 -TT-TCA-TG-C-AA-AAGAAAAT-CAT-CAGTATCATTTATCCTA-AAGAGGAGAATGTGT--T
* * * * * *** * *
83432 T-TGAGATACGAACTTAGACTTTACAAAATTTG-GTGGGAAGAAAGCCTTTGTGGAGAATGCGT-
115 TAT-AG-T--G--CCTA-A--TCACAAAA--TGAAT--GAAG--A-TCATT-ACCAGAATCCATG
* * * * * ****** * *
83494 TTATAGTGCCTAATCATAGAATGAATGAAAATCCTTTCTAGAATCCATGTTTGTCTCATTTGAGG
163 TT-T-GT--CTCAT--TTG-AGGCACG--AA--C--T-TAG-A--C-T-TTACAAAAATTGGTGG
* * * * * * * * * * * * *
83559 CATGAACTTAGACTTTACAAAAATTGGTGGGAA-GAAGGTCTTTC--TAGCA--AAACC-AAAGC
209 GAAGAA---AGCCTTT-C-----TT-G-AGAAACCAAAG-C-ATCAATATCATGTATCCTTATG-
* * * * * *
83618 ATCAATATCATGTATCCTTACGAGAAGACTATGCCTATGGTGCCTAAT-ATTAAAATGAATGGCG
260 A-GAAGA-C-T-A-----T-------G--T-T---TATGGTGCCTAATCCTGAAAA-GAATGGGG
* * * * *
83682 ATTAGCATGGGTATTCATGTTTATCTTATTTAAGAGACAATCTTTGATTCTATCAAAAATGGTAG
302 ATTAGTAT-GATATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGG
* * * * *
83747 AAAGAAAAGCATTTCTTGCGACACCAAAGCTTCAGTGTCATTTATCCTAATGAACGGAATGTGTT
366 AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTT
* * * **
83812 TTTGGTTCCTAATATTGAAAAGAATGGAGAATGTTACGAGAATC
431 TTTGGTTCCCAATATTGAAAAGAATGAAGACTGTTATAAGAATC
* * * * *
83856 AATGCATGCCTTATTTATGGGATGAACTTTTATTTTAAGGAAAAAAGGCCAAAGAAAAGA-TTTC
1 -ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAGTTT-
* * * **
83920 CAAGCAAAAGAAAATCATCAATATCATTCATCCTAGTGAGGAGAATGTGTTTATAGTGCCTAATC
64 CATGCAAAAGAAAATCATCAGTATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATC
* * * *
83985 ATAAAATGAATGAAGATCATT-CCAAGAATCCATGTTTGCCTCATTTGAGACACGAATTTAGACT
129 ACAAAATGAATGAAGATCATTACC-AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACT
* * * ** *
84049 TTACAAAATTTGGTGGGAAGAAAGCCTTTCGTGCGAAACCAAAGTGTCAATATCGTGTATCCTTA
193 TTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGAGAAACCAAAGCATCAATATCATGTATCCTTA
* * * *
84114 CGAGAAGGCTATGTTTATGGTGCCTAATCTTGAAACA-AATGGGGATTAGTATGGGTATTCATGT
258 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA-AGAATGGGGATTAGTAT-GATATTCATGT
* * * *
84178 TTGTCTTATTTAAGAGACAAACTTTGATTCTGTCAAAAACGGTTG-AA-AAAAGCATTTT-TTGT
321 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGC-TTTTCTTGC
* *
84240 GAC-CCTAAAGCATCAATGTCATGTATCCTAATGAACGGAATGTGTTTTTGGTTCGCAATATTGA
385 GACACC-AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATATTGA
* * * **
84304 AAATAATGGAGACTATTACGAGAATC
449 AAAGAATGAAGACTGTTATAAGAATC
* * * * *
84330 AATGCTTGCTTTATTTGAGGGATGAATTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGA-TTTC
1 -ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAGTTT-
* **
84394 CCA-GCAAAAGAAAATCATCAATATCATTTATCC-AAATGAAAAGAATGTG-TT-TA------AA
64 -CATGCAAAAGAAAATCATCAGTATCATTTATCCTAAA-GAGGAGAATGTGTTTATAGTGCCTAA
* * * * * * * *
84449 TCGCAAAATGATTGAAGATCATTACTAGAATCAATGTTTATCTTATTTGAGACATGAAGC-TAGA
127 TCACAAAATGAATGAAGATCATTACCAGAATCCATGTTTGTCTCATTTGAGGCACGAA-CTTAGA
* * * * ** *
84513 CTTCGA-AAAAATTGGTAGTAAGAAAGCCTTTCGT-ATGAAACCAAAGCATCAATATTGTTTATC
191 CTT-TACAAAAATTGGTGGGAAGAAAGCCTTTCTTGA-GAAACCAAAGCATCAATATCATGTATC
* * * * * * * *
84576 TTTATGAGAAGACTATGGTTATGGTGCTTAATCTTGTAATGAATGGGGATTAGTATGGGTATTCT
254 CTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTAT-GATATTCA
* * *
84641 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTGTCAAAAACGGTTGAAAG-AAAGCATTTT-T
318 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGC-TTTTCT
* * *
84704 TGCGACACCAAAGCATCAATGTCATGTATCCTAATGAACGAAATGTGTTTTTGGTTCCCAATACT
382 TGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATATT
* * *
84769 GAAAAGAATGGAGACTATTACAAGAATC
447 GAAAAGAATGAAGACTGTTATAAGAATC
*
84797 AATGCTTGCCTTATTTAAGGGATGAGCTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA-TTTC
1 -ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAGTTT-
* * * * * * * *
84861 CAAGCAAAAGAAAATCATCAATACCATTTATCCGAATGAGGTGAATGCGTTTGTAGTGCCTAATC
64 CATGCAAAAGAAAATCATCAGTATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATC
* * * * * * *
84926 GCAAAATGAATGAAGATCATTACTAGAATCAATGTTTATCTCATTTGA-GAATGAA-TCTGGACT
129 ACAAAATGAATGAAGATCATTACCAGAATCCATGTTTGTCTCATTTGAGGCACGAACT-TAGACT
* * * * * ** * *
84989 TCGA-AAAAATT-GTAGGAAGAAAGCCTTTATTGTGACACCAAAGTGTCACTATCACGTATTCC-
193 T-TACAAAAATTGGTGGGAAGAAAGCCTTTCTTGAGAAACCAAAGCATCAATATCATGTA-TCCT
* * * * * * * ** *
85051 TATTAGAATACTATGTTTATGATGCCTACTCTTGAAATGAATGGGGATTAGTAGGGGGATTTATG
256 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTA-TGATATTCATG
* * * * * * ** *
85116 CTTGTCTTATTTATGAGGCAAACTTAGATTCTATCAAAAATGGTTGAAAGGACTGCTTTTCTTGT
320 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC
* * * * * *
85181 GATAGCAAAGCATCAATGTCTTGTATCCTAATGAAGGAAATGTGCTTTTGGTTCCCAATCTTGAA
385 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATATTGAA
* *
85246 AAGAACTG-AGATTGTTACAAGAATC
450 AAGAA-TGAAGACTGTTATAAGAATC
* * * *
85271 ATTGCTTGCCTTATTTAAGGGATGAATTTTGATTTTATGGGAAATAGGGAAAAGAAAAGA-TTTC
1 A-TGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAGTTT-
* *
85335 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATA-AGGAGAATGTGCTTATAGTGCCTAAT
64 CATGCAAAAGAAAATCATCAGTATCATTTATCCTAA-AGAGGAGAATGTGTTTATAGTGCCTAAT
* * * * **
85399 AATAAAATGAGTGAAGATCATT-CCTAGAAT-CGTGTTTGTCTCATTTGAGATACGAACTTAGAC
128 CACAAAATGAATGAAGATCATTACC-AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC
*
85462 TTTACAAAATTTGGTGGGAAGAAAGCCTTT
192 TTTACAAAAATTGGTGGGAAGAAAGCCTTT
85492 GTGGAGAATG
Statistics
Matches: 3262, Mismatches: 613, Indels: 412
0.76 0.14 0.10
Matches are distributed among these distances:
466 211 0.06
467 193 0.06
468 6 0.00
469 2 0.00
472 6 0.00
473 246 0.08
474 712 0.22
475 570 0.17
476 805 0.25
477 25 0.01
478 16 0.00
479 16 0.00
480 18 0.01
481 18 0.01
482 6 0.00
483 4 0.00
485 3 0.00
486 1 0.00
488 6 0.00
489 2 0.00
490 2 0.00
491 4 0.00
493 1 0.00
494 7 0.00
495 11 0.00
496 9 0.00
497 3 0.00
498 8 0.00
499 2 0.00
500 2 0.00
501 1 0.00
502 6 0.00
503 6 0.00
504 2 0.00
506 11 0.00
507 1 0.00
508 1 0.00
509 4 0.00
510 2 0.00
511 3 0.00
512 2 0.00
513 1 0.00
514 4 0.00
515 6 0.00
516 2 0.00
518 9 0.00
519 2 0.00
521 4 0.00
522 1 0.00
523 4 0.00
524 14 0.00
525 13 0.00
526 4 0.00
527 2 0.00
528 4 0.00
529 2 0.00
530 1 0.00
531 6 0.00
532 1 0.00
533 1 0.00
534 3 0.00
536 4 0.00
537 3 0.00
538 19 0.01
539 20 0.01
540 12 0.00
541 17 0.01
542 7 0.00
543 12 0.00
544 14 0.00
545 25 0.01
546 91 0.03
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (474 bp):
ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAGTTTCA
TGCAAAAGAAAATCATCAGTATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCAC
AAAATGAATGAAGATCATTACCAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
CAAAAATTGGTGGGAAGAAAGCCTTTCTTGAGAAACCAAAGCATCAATATCATGTATCCTTATGA
GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGATATTCATGTTTGTC
TTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACC
AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATATTGAAAAGAAT
GAAGACTGTTATAAGAATC
Found at i:83589 original size:121 final size:120
Alignment explanation
Indices: 83363--83594 Score: 356
Period size: 121 Copynumber: 1.9 Consensus size: 120
83353 ATCCTAATAA
* * *
83363 GGAGAATGTGCTTATAGTGCCTAATCATAAAATGAATGAAGATCATTCCTAGAATCGTGTTTGTC
1 GGAGAATGCGCTTATAGTGCCTAATCATAAAATGAATGAAAATCATTCCTAGAATCATGTTTGTC
* *
83428 TCATTTGAGATACGAACTTAGACTTTACAAAATTTGGTGGGAAGAAAGCCTTTGT
66 TCATTTGAGACACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGT
* * * *
83483 GGAGAATGCGTTTATAGTGCCTAATCATAGAATGAATGAAAATCCTTTCTAGAATCCATGTTTGT
1 GGAGAATGCGCTTATAGTGCCTAATCATAAAATGAATGAAAATCATTCCTAGAAT-CATGTTTGT
* *
83548 CTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAA
65 CTCATTTGAGACACGAACTTAGACTTTACAAAAATTGGTGGGAAGAA
83595 GGTCTTTCTA
Statistics
Matches: 100, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
120 49 0.49
121 51 0.51
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.32
Consensus pattern (120 bp):
GGAGAATGCGCTTATAGTGCCTAATCATAAAATGAATGAAAATCATTCCTAGAATCATGTTTGTC
TCATTTGAGACACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGT
Found at i:85266 original size:474 final size:475
Alignment explanation
Indices: 83483--85491 Score: 2451
Period size: 474 Copynumber: 4.3 Consensus size: 475
83473 AAGCCTTTGT
* * * * * *
83483 GGAGAATGCGTTTATAGTGCCTAATCATAGAATGAATGAAAATCCTTTCTAGAATCCATGTTTGT
1 GGAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCAATGTTTGT
* * * * * *
83548 CTCATTTGAGGCATGAA-CTTAGACTTTACAAAAATTGGTGGGAAGAAGGTCTTTC-TAGCAAAA
66 CTCATTTGAGACATGAATC-TAGACTTGACAAAAATTGGTAGGAAGAAAGCCTTTCGT-GCGAAA
** * *
83611 CCAAAGCATCAATATCATGTATCCTTACGAGAAGACTATGCCTATGGTGCCTAATATTAAAATGA
129 CCAAAGCATCAATATCATGTATCCTTACGAGAAGACTATGTTTATGGTGCCTAATCTTGAAATGA
* * * *
83676 ATGGCGATTAGCATGGGTATTCATGTTTATCTTATTTAAGAGACAATCTTTGATTCTATCAAAAA
194 ATGGGGATTAGTATGGGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * * * * *
83741 TGGTAGAAAGAAAAGCATTTCTTGCGACACCAAAGCTTCAGTGTCATTTATCCTAATGAACGGAA
259 CGGTTGAAAG-AAAGCATTTTTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAACGGAA
* * * * *
83806 TGTGTTTTTGGTTCCTAATATTGAAAAGAATGGAGAATGTTACGAGAATCAATGCATGCCTTATT
323 TGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTATTACAAGAATCAATGCTTGCCTTATT
* * * *
83871 TATGGGATGAACTTTTATTTTAAGGAAAAAAGGCCAAAGAAAAGATTTCCAAGCAAAAGAAAATC
388 TAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATC
* *
83936 ATCAATATCATTCATCCTAGTGA
453 ATCAATATCATTTATCCTAATGA
* * * *
83959 GGAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCATTCCAAGAATCCATGTTTGC
1 GGAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCAATGTTTGT
* * * * *
84024 CTCATTTGAGACACGAATTTAGACTTTACAAAATTTGGTGGGAAGAAAGCCTTTCGTGCGAAACC
66 CTCATTTGAGACATGAATCTAGACTTGACAAAAATTGGTAGGAAGAAAGCCTTTCGTGCGAAACC
** * * **
84089 AAAGTGTCAATATCGTGTATCCTTACGAGAAGGCTATGTTTATGGTGCCTAATCTTGAAACAAAT
131 AAAGCATCAATATCATGTATCCTTACGAGAAGACTATGTTTATGGTGCCTAATCTTGAAATGAAT
*
84154 GGGGATTAGTATGGGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTGTCAAAAACG
196 GGGGATTAGTATGGGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
*
84219 GTTGAAA-AAAGCATTTTTTGTGAC-CCTAAAGCATCAATGTCATGTATCCTAATGAACGGAATG
261 GTTGAAAGAAAGCATTTTTTGCGACACC-AAAGCATCAATGTCATGTATCCTAATGAACGGAATG
* * * * *
84282 TGTTTTTGGTTCGCAATATTGAAAATAATGGAGACTATTACGAGAATCAATGCTTGCTTTATTTG
325 TGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTATTACAAGAATCAATGCTTGCCTTATTTA
* * * *
84347 AGGGATGAATTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCCAGCAAAAGAAAATCAT
390 AGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCAT
*
84412 CAATATCATTTATCCAAATGA
455 CAATATCATTTATCCTAATGA
** ** * *
84433 AAAGAATGTG-TT-TA------AATCGCAAAATGATTGAAGATCATTACTAGAATCAATGTTTAT
1 GGAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCAATGTTTGT
* * * **
84490 CTTATTTGAGACATGAAGCTAGACTTCGA-AAAAATTGGTAGTAAGAAAGCCTTTCGTATGAAAC
66 CTCATTTGAGACATGAATCTAGACTT-GACAAAAATTGGTAGGAAGAAAGCCTTTCGTGCGAAAC
** * * * * * *
84554 CAAAGCATCAATATTGTTTATCTTTATGAGAAGACTATGGTTATGGTGCTTAATCTTGTAATGAA
130 CAAAGCATCAATATCATGTATCCTTACGAGAAGACTATGTTTATGGTGCCTAATCTTGAAATGAA
* *
84619 TGGGGATTAGTATGGGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTGTCAAAAAC
195 TGGGGATTAGTATGGGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
*
84684 GGTTGAAAGAAAGCATTTTTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAACGAAATG
260 GGTTGAAAGAAAGCATTTTTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAACGGAATG
*
84749 TGTTTTTGGTTCCCAATACTGAAAAGAATGGAGACTATTACAAGAATCAATGCTTGCCTTATTTA
325 TGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTATTACAAGAATCAATGCTTGCCTTATTTA
*
84814 AGGGATGAGCTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCAT
390 AGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCAT
* *
84879 CAATACCATTTATCCGAATGA
455 CAATATCATTTATCCTAATGA
* * * ** *
84900 GGTGAATGCGTTTGTAGTGCCTAATCGCAAAATGAATGAAGATCATTACTAGAATCAATGTTTAT
1 GGAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCAATGTTTGT
* ** * *
84965 CTCATTTGAGA-ATGAATCTGGACTTCGA-AAAAATT-GTAGGAAGAAAGCCTTTATTGTGACAC
66 CTCATTTGAGACATGAATCTAGACTT-GACAAAAATTGGTAGGAAGAAAGCCTTTCGTGCGAAAC
** * * ** * * *
85027 CAAAGTGTCACTATCACGTATTCC-TATTAGAATACTATGTTTATGATGCCTACTCTTGAAATGA
130 CAAAGCATCAATATCATGTA-TCCTTACGAGAAGACTATGTTTATGGTGCCTAATCTTGAAATGA
* * * * * * *
85091 ATGGGGATTAGTAGGGGGATTTATGCTTGTCTTATTTATGAGGCAAACTTAGATTCTATCAAAAA
194 ATGGGGATTAGTATGGGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* ** * * * *
85156 TGGTTGAAAGGACTGC-TTTTCTTGTGATAGCAAAGCATCAATGTCTTGTATCCTAATGAA-GGA
259 CGGTTGAAA-GAAAGCATTTT-TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAACGG-
* * * * *
85219 AATGTGCTTTTGGTTCCCAATCTTGAAAAGAACT-GAGATTGTTACAAGAATCATTGCTTGCCTT
321 AATGTGTTTTTGGTTCCCAATATTGAAAAGAA-TGGAGACTATTACAAGAATCAATGCTTGCCTT
* * * * *
85283 ATTTAAGGGATGAATTTTGATTTTATGGGAAATAGGGAAAAGAAAAGATTTCCATGCAAAAGAAA
385 ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAA
*
85348 ATCATCAATATCATTTATCCTAATAA
450 ATCATCAATATCATTTATCCTAATGA
* * * * *
85374 GGAGAATGTGCTTATAGTGCCTAATAATAAAATGAGTGAAGATCATTCCTAGAATC-GTGTTTGT
1 GGAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCAATGTTTGT
* * * * *
85438 CTCATTTGAGATACGAA-CTTAGACTTTACAAAATTTGGTGGGAAGAAAGCCTTT
66 CTCATTTGAGACATGAATC-TAGACTTGACAAAAATTGGTAGGAAGAAAGCCTTT
85492 GTGGAGAATG
Statistics
Matches: 1331, Mismatches: 179, Indels: 47
0.85 0.11 0.03
Matches are distributed among these distances:
466 212 0.16
467 196 0.15
468 4 0.00
469 2 0.00
472 2 0.00
473 160 0.12
474 452 0.34
475 69 0.05
476 233 0.18
477 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (475 bp):
GGAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCAATGTTTGT
CTCATTTGAGACATGAATCTAGACTTGACAAAAATTGGTAGGAAGAAAGCCTTTCGTGCGAAACC
AAAGCATCAATATCATGTATCCTTACGAGAAGACTATGTTTATGGTGCCTAATCTTGAAATGAAT
GGGGATTAGTATGGGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
GTTGAAAGAAAGCATTTTTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAACGGAATGT
GTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTATTACAAGAATCAATGCTTGCCTTATTTAA
GGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATC
AATATCATTTATCCTAATGA
Found at i:85354 original size:941 final size:941
Alignment explanation
Indices: 83513--85491 Score: 2505
Period size: 941 Copynumber: 2.1 Consensus size: 941
83503 CTAATCATAG
* * * * * *
83513 AATGAATGAAAATCCTTTCTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACA
1 AATGAATGAAAATCATTACTAGAATCAATGTTTATCTCATTTGAGACATGAACTTAGACTTGACA
* * *
83578 AAAATTGGTGGGAAGAAGGTCTTTCTAGCAAAACCAAAGCATCAATATCATGTATCCTTACGAGA
66 AAAATTGGTAGGAAGAAAGCCTTTCTAG-AAAACCAAAGCATCAATATCATGTATCCTTACGAGA
83643 AGACTATGCCTATGGTGCCTAATATTAAAATGAATGGCGATTAGCATGGGTATTCATGTTTATCT
130 AGACTATGCCTATGGTGCCTAATATTAAAATGAATGGCGATTAGCATGGGTATTCATGTTTATCT
* *
83708 TATTTAAGAGACAATCTTTGATTCTATCAAAAATGGTAGAAAGAAAAGCATTTCTTGCGACACCA
195 TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTAGAAAGAAAAGCATTTCTTGCGACACCA
* * * * * *
83773 AAGCTTCAGTGTCATTTATCCTAATGAACGGAATGTGTTTTTGGTTCCTAATATTGAAAAGAATG
260 AAGCATCAATGTCATGTATCCTAATGAACGAAATGTGTTTTTGGTTCCCAATACTGAAAAGAATG
* * * *
83838 GAGAATGTTACGAGAATCAATGCATGCCTTATTTATGGGATGAACTTTTATTTTAAGGAAAAAAG
325 GAGAATATTACAAGAATCAATGCATGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAAAG
* * * *
83903 GCCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATATCATTCATCCTAGTGAGGAGAATGT
390 GCCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATACCATTCATCCGAATGAGGAGAATGC
* * * *
83968 GTTTATAGTGCCTAATCATAAAATGAATGAAGATCATTCCAAGAATCCATGTTTGCCTCATTTGA
455 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACAAGAATCAATGTTTACCTCATTTGA
* * * * *
84033 GACACGAATTTAGACTTTACAAAATTTGGTGGGAAGAAAGCCTTTCGTGCGAAACCAAAGTGTCA
520 GACACGAATCTAGACTTGACAAAAATTGGTAGGAAGAAAGCCTTTAGTGCGAAACCAAAGTGTCA
** * *
84098 ATATCGTGTATCCTTACGAGAAGGCTATGTTTATGGTGCCTAATCTTGAAACAAATGGGGATTAG
585 ATATCACGTATCCTTACGAGAAGACTATGTTTATGATGCCTAATCTTGAAACAAATGGGGATTAG
* * * * *
84163 TATGGGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTGTCAAAAACGGTTGAAAAA
650 TAGGGGGATTCATGCTTGTCTTATTTAAGAGACAAACTTAGATTCTATCAAAAACGGTTGAAAAA
* *
84228 AGCATTTTTTGTGACCCTAAAGCATCAATGTCATGTATCCTAATGAACGGAATGTGTTTTTGGTT
715 AGCATTTTTTGTGAACCTAAAGCATCAATGTCATGTATCCTAATGAACGGAATGTGCTTTTGGTT
* * * * *
84293 CGCAATATTGAAAATAATGGAGACTATTACGAGAATCAATGCTTGCTTTATTTGAGGGATGAATT
780 CCCAATATTGAAAAGAATGGAGACTATTACAAGAATCAATGCTTGCCTTATTTAAGGGATGAATT
*
84358 TTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCCAGCAAAAGAAAATCATCAATATCATTT
845 TTGATTTTAAGAAAAATAAGGAAAAGAAAAGATTTCCCAGCAAAAGAAAATCATCAATATCATTT
84423 ATCCAAATGAAAAGAATGTGTTTAAATCGCAA
910 ATCCAAATGAAAAGAATGTGTTTAAATCGCAA
* * *
84455 AATGATTGAAGATCATTACTAGAATCAATGTTTATCTTATTTGAGACATGAAGC-TAGACTTCGA
1 AATGAATGAAAATCATTACTAGAATCAATGTTTATCTCATTTGAGACATGAA-CTTAGACTT-GA
* ** * * *
84519 -AAAAATTGGTAGTAAGAAAGCCTTTCGTATG-AAACCAAAGCATCAATATTGTTTATCTTTATG
64 CAAAAATTGGTAGGAAGAAAGCCTTTC-TA-GAAAACCAAAGCATCAATATCATGTATCCTTACG
** * * ** * * * *
84582 AGAAGACTATGGTTATGGTGCTTAATCTTGTAATGAATGGGGATTAGTATGGGTATTCTTGTTTG
127 AGAAGACTATGCCTATGGTGCCTAATATTAAAATGAATGGCGATTAGCATGGGTATTCATGTTTA
* * *
84647 TCTTATTTAAGAGACAAACTTTGATTCTGTCAAAAACGGTTGAAAG-AAAGCATTTTTTGCGACA
192 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTAGAAAGAAAAGCATTTCTTGCGACA
84711 CCAAAGCATCAATGTCATGTATCCTAATGAACGAAATGTGTTTTTGGTTCCCAATACTGAAAAGA
257 CCAAAGCATCAATGTCATGTATCCTAATGAACGAAATGTGTTTTTGGTTCCCAATACTGAAAAGA
* * *
84776 ATGGAGACTATTACAAGAATCAATGCTTGCCTTATTTAAGGGATGAGCTTTGATTTTAAGGAAAA
322 ATGGAGAATATTACAAGAATCAATGCATGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA
* * * *
84841 TAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATACCATTTATCCGAATGAGGTGAA
387 AAGGCCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATACCATTCATCCGAATGAGGAGAA
* * * *
84906 TGCGTTTGTAGTGCCTAATCGCAAAATGAATGAAGATCATTACTAGAATCAATGTTTATCTCATT
452 TGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACAAGAATCAATGTTTACCTCATT
* * * * *
84971 TGAGA-ATGAATCTGGACTTCGA-AAAAATT-GTAGGAAGAAAGCCTTTATTGTGACACCAAAGT
517 TGAGACACGAATCTAGACTT-GACAAAAATTGGTAGGAAGAAAGCCTTTAGTGCGAAACCAAAGT
* ** * * **
85033 GTCACTATCACGTATTCC-TATTAGAATACTATGTTTATGATGCCTACTCTTGAAATGAATGGGG
581 GTCAATATCACGTA-TCCTTACGAGAAGACTATGTTTATGATGCCTAATCTTGAAACAAATGGGG
* * * *
85097 ATTAGTAGGGGGATTTATGCTTGTCTTATTTATGAGGCAAACTTAGATTCTATCAAAAATGGTTG
645 ATTAGTAGGGGGATTCATGCTTGTCTTATTTAAGAGACAAACTTAGATTCTATCAAAAACGGTTG
** * *
85162 AAAGGACTGC-TTTTCTTGTGATAGC-AAAGCATCAATGTCTTGTATCCTAATGAA-GGAAATGT
710 AAA--AAAGCATTTT-TTGTGA-ACCTAAAGCATCAATGTCATGTATCCTAATGAACGG-AATGT
* * * *
85224 GCTTTTGGTTCCCAATCTTGAAAAGAACT-GAGATTGTTACAAGAATCATTGCTTGCCTTATTTA
770 GCTTTTGGTTCCCAATATTGAAAAGAA-TGGAGACTATTACAAGAATCAATGCTTGCCTTATTTA
* ** *
85288 AGGGATGAATTTTGATTTTATGGGAAATAGGGAAAAGAAAAGATTT-CCATGCAAAAGAAAATCA
834 AGGGATGAATTTTGATTTTAAGAAAAATAAGGAAAAGAAAAGATTTCCCA-GCAAAAGAAAATCA
* * * *
85352 TCAATATCATTTATCCTAAT-AAGGAGAATGTGCTTATAGT-GCCTAA
898 TCAATATCATTTATCCAAATGAA-AAGAATGTGTTTA-AATCG-C-AA
* * * * * *
85398 TAATAAAATGAGTGAAGATCATTCCTAGAATC-GTGTTTGTCTCATTTGAGATACGAACTTAGAC
1 -AAT-GAATGA---AA-ATCATTACTAGAATCAATGTTTATCTCATTTGAGACATGAACTTAGAC
* * *
85462 TTTACAAAATTTGGTGGGAAGAAAGCCTTT
60 TTGACAAAAATTGGTAGGAAGAAAGCCTTT
85492 GTGGAGAATG
Statistics
Matches: 883, Mismatches: 129, Indels: 44
0.84 0.12 0.04
Matches are distributed among these distances:
939 136 0.15
940 31 0.04
941 434 0.49
942 202 0.23
943 6 0.01
944 4 0.00
945 4 0.00
947 2 0.00
948 50 0.06
949 14 0.02
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (941 bp):
AATGAATGAAAATCATTACTAGAATCAATGTTTATCTCATTTGAGACATGAACTTAGACTTGACA
AAAATTGGTAGGAAGAAAGCCTTTCTAGAAAACCAAAGCATCAATATCATGTATCCTTACGAGAA
GACTATGCCTATGGTGCCTAATATTAAAATGAATGGCGATTAGCATGGGTATTCATGTTTATCTT
ATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTAGAAAGAAAAGCATTTCTTGCGACACCAA
AGCATCAATGTCATGTATCCTAATGAACGAAATGTGTTTTTGGTTCCCAATACTGAAAAGAATGG
AGAATATTACAAGAATCAATGCATGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAAAGG
CCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATACCATTCATCCGAATGAGGAGAATGCG
TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACAAGAATCAATGTTTACCTCATTTGAG
ACACGAATCTAGACTTGACAAAAATTGGTAGGAAGAAAGCCTTTAGTGCGAAACCAAAGTGTCAA
TATCACGTATCCTTACGAGAAGACTATGTTTATGATGCCTAATCTTGAAACAAATGGGGATTAGT
AGGGGGATTCATGCTTGTCTTATTTAAGAGACAAACTTAGATTCTATCAAAAACGGTTGAAAAAA
GCATTTTTTGTGAACCTAAAGCATCAATGTCATGTATCCTAATGAACGGAATGTGCTTTTGGTTC
CCAATATTGAAAAGAATGGAGACTATTACAAGAATCAATGCTTGCCTTATTTAAGGGATGAATTT
TGATTTTAAGAAAAATAAGGAAAAGAAAAGATTTCCCAGCAAAAGAAAATCATCAATATCATTTA
TCCAAATGAAAAGAATGTGTTTAAATCGCAA
Found at i:85590 original size:121 final size:120
Alignment explanation
Indices: 85374--85612 Score: 343
Period size: 121 Copynumber: 2.0 Consensus size: 120
85364 ATCCTAATAA
* * * *
85374 GGAGAATGTGCTTATAGTGCCTAATAATAAAATGAGTGAAGATCATTCCTAGAATCGTGTTTGTC
1 GGAGAATGCGCTTATAGTGCCTAATAATAAAATGAATGAAAATCATTCCTAGAATCATGTTTGTC
* *
85439 TCATTTGAGATACGAACTTAGACTTTACAAAATTTGGTGGGAAGAAAGCCTTTGT
66 TCATTTGAGACACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGT
* * * * *
85494 GGAGAATGCGTTTATAGTGCCTAATCATAGAATGAATGAAAATCCTTTCTAGAATCCATGTTTGT
1 GGAGAATGCGCTTATAGTGCCTAATAATAAAATGAATGAAAATCATTCCTAGAAT-CATGTTTGT
* * *
85559 CTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAATCCTTT
65 CTCATTTGAGACACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTT
85613 ATTGCGTAAC
Statistics
Matches: 104, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
120 47 0.45
121 57 0.55
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (120 bp):
GGAGAATGCGCTTATAGTGCCTAATAATAAAATGAATGAAAATCATTCCTAGAATCATGTTTGTC
TCATTTGAGACACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGT
Found at i:86398 original size:476 final size:474
Alignment explanation
Indices: 85494--87696 Score: 2491
Period size: 476 Copynumber: 4.7 Consensus size: 474
85484 AAGCCTTTGT
* * * * * * * *
85494 GGAGAATGCGTTTATAGTGCCTAATCATAGAATGAATGAAAATCCTTTCTAGAATCCATGTTTGT
1 GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCAATGTTTAT
* * * *
85559 CTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAATCCTTTATTGCGTAACC
66 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACC
** * * *
85624 AAAGTGTCAATATCGTGTATCGTTATGAGAATACTATGGTTT-TGGTGCCTAATCCTGAAAAGAA
131 AAAGCATCAATATCGTGTATCCTTATGAGAAGACTAT-GTTTATGGTGCCTAATCTTGAAAAGAA
* * *
85688 TGGGGATTAGCATGACTATTCATGTTTGTCTTATTTAAGAGACAACCTTTGATTCTATTAAAAAT
195 TGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAAT
* * * * *
85753 GGTGGAAAGAAAACCTTTTCCTGAAACCCCAAAGCATCAATGTCTTGTATCCTAATAAA-GAGAA
260 GGT-GAAAGAAAACATTTT-TTGCAACACCAAAGCATCAATGTCATGTATCCTAATAAACG-GAA
* * * ***
85817 TGTGCTTTTGGTTCCCAATATTGAAAAGAATGGAGACTGTTACTAGAATCAGCACTTGCCTTATT
322 TGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGCCTTATT
* * *
85882 TAAGGGATAAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGAGTTTCGTA-CAATAGAAAAT
387 TAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGA-TTTCCTAGCAAAAGAAAAT
*
85946 CATCACTATCATTTATCCTAATGA
451 CATCAATATCATTTATCCTAATGA
* * * * * * *
85970 GGAGAACGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATCACCATAATCCATTTTTGT
1 GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCAATGTTTAT
* * *
86035 CTCATTTGAGGTACGAACTTAGACTTTACAAAATTTGGTGGGAAGACAGCCTTTCTTGCGAAACC
66 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACC
* *
86100 AAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTACGGTGCCTAATCTTGAAAAAAAT
131 AAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAAT
* * *
86165 GGGGATTAGTATGACTATTCATGTTAGTTTTATTTGAGAGACAAACTTTGATTCTATAAAAAATG
196 GGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATG
* * * * *
86230 GTGAAAAGAAAACCTTTTCTTGCAACACCAAAGCATCAATATCATGTATTCTAACAAAGGGAATG
261 GTG-AAAGAAAACATTTT-TTGCAACACCAAAGCATCAATGTCATGTATCCTAATAAACGGAATG
* * * * * *
86295 TGTTTTTGGCTCTCACTATTGAAAGGAATGGAGACTGTTACGAGAATCAATTCTTGCCTTATTTA
324 TGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGCCTTATTTA
* * * * * *
86360 AGGGGTGAACTTTGATTTTAAGGAAAATAGGACAAAGAAAAGTTTTCC-ATGCAAAAGAAATTCG
389 AGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCTA-GCAAAAGAAAATCA
* *
86424 TTAATATCATTTATCCTAAAGA
453 TCAATATCATTTATCCTAATGA
* * * * * * *
86446 TGAGAAGGTGTTTATAGTGCCTAATCATAAAATG-ATGGAAGATCATTTCTAGATTCTATGTTTC
1 GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT-GAAGATCATTACTAGAATCAATGTTTA
* * * *
86510 TCTCATTTGAGACACGAACCTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGTAAC
65 TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAAC
* * * * *
86575 AAAATG--TCAATATCATGTATCCTTATGAGAAAACTATGTTTTTGGTGCCTAATCCTGAAAAGA
130 CAAA-GCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGA
** * *
86638 ATGGGGATTAGTATGGGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTGTGAAAAA
194 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAA
* * ** *
86703 CGGTTGAAA-AAAGCATTTTTTGTGAC-CCTAAAGCATCAATGTCATGTATCCTAATGAACGGAA
259 TGG-TGAAAGAAAACATTTTTTGCAACACC-AAAGCATCAATGTCATGTATCCTAATAAACGGAA
* * *
86766 TGTGTTTTTGGTTCGCAATATTGAAAATAATGGAGACTATTACGAGAATCAATGCTTGCTTTATT
322 TGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGCCTTATT
* * * *
86831 TGAGGGATGAATTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCCAGCAAAAGAAAATC
387 TAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCTAGCAAAAGAAAATC
*
86896 ATCAATATCATTTATCCAAATGA
452 ATCAATATCATTTATCCTAATGA
** * *
86919 AAAGAATGTG-TT-TA------AATCGCAAAATGATTGAAGATCATTACTAGAATCAATGTTTAT
1 GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCAATGTTTAT
* * * * * **
86976 CTCATTTGAGACACGAAGC-TAGACTTCGA-AAAAATTGGTAGTAAGAAAGCCTTTCGTATGAAA
66 CTCATTTGAGGCACGAA-CTTAGACTT-TACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAA
* * * * *
87039 CCAAAGCATCAATATTGTTTATCTTTATGAGAAGACTATGTTTATGGTGCCTAATCTTGTAACGA
129 CCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGA
** * *
87104 ATGGGGATTAGTATGGGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTGTCAAAAA
194 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT-AAAAA
* * * *
87169 CA-GTTGAAAGAAAGCATTTTTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAACGGAA
258 -ATGGTGAAAGAAAACATTTTTTGCAACACCAAAGCATCAATGTCATGTATCCTAATAAACGGAA
* *
87233 TGTGTTTTTGGTTCCCAATACTGAAAAGAATGGAGACTATTACAAGAATCAATGCTTGCCTTATT
322 TGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGCCTTATT
* * *
87298 TAAGGGATGAGCTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATC
387 TAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCTAGCAAAAGAAAATC
* * *
87363 ATCAATACCATTTATCCGAATAA
452 ATCAATATCATTTATCCTAATGA
** * *
87386 GGAGAATGCATTTGTAGTGCCTAATCGCAAAATGAATGAAGATCATTACTAGAATCAATGTTTAT
1 GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCAATGTTTAT
* * * * * * * * *
87451 CTCACTTGA-GAATGAA-TCTGGACTTCGA-AAAAATT-GTAGGAAGAAAGCCTTTATTGTGACA
66 CTCATTTGAGGCACGAACT-TAGACTT-TACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAA
** * * * * * * *
87512 CCAAAGTGTCACTATCGTGTATTCTTATTAGAATACTATGTTTATGATGCCTACTCTTGAAATGA
129 CCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGA
* * * * * *
87577 ATGGGGATTAGTAGGGA-T-TT-ATGCTTGTCTTATTTACGAGGCAAACTTAGATTCTATCAAAA
194 ATGGGGATTAGTA-TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAA
*** * * * *
87639 ATGGTTGAAAGGACTGC-TTTTCTTGCGATAGCAAAGCATCAATGTCTTGTATCCTAAT
258 ATGG-TGAAA-GAAAACATTTT-TTGCAACACCAAAGCATCAATGTCATGTATCCTAAT
87697 GAAGGAAATA
Statistics
Matches: 1485, Mismatches: 208, Indels: 72
0.84 0.12 0.04
Matches are distributed among these distances:
464 1 0.00
465 91 0.06
466 114 0.08
467 200 0.13
468 5 0.00
469 3 0.00
470 5 0.00
471 42 0.03
472 43 0.03
473 259 0.17
474 31 0.02
475 175 0.12
476 514 0.35
477 2 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (474 bp):
GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCAATGTTTAT
CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACC
AAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAAT
GGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATG
GTGAAAGAAAACATTTTTTGCAACACCAAAGCATCAATGTCATGTATCCTAATAAACGGAATGTG
TTTTTGGTTCCCAATATTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAG
GGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCTAGCAAAAGAAAATCATCA
ATATCATTTATCCTAATGA
Found at i:88079 original size:418 final size:417
Alignment explanation
Indices: 87293--88108 Score: 1054
Period size: 418 Copynumber: 2.0 Consensus size: 417
87283 AATGCTTGCC
*
87293 TTATTTAAGGGATGAGCTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGA
1 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGA
* * *
87358 AAATCATCAATACCATTTATCCGAATAAGGAGAATGCATTTGTAGTGCCTAATCGCAAAATGAAT
66 AAATCATCAATACCATTTATCCGAATAAGGAGAATGCACTTATAGTGCCTAATCACAAAATGAAT
* *
87423 GAAGATCATTACTAGAATCAATGTTTATCTCACTTGAGAATGAATCTGGACTTCGAAAAAATTGT
131 GAAGATCATTACTAGAATCAATGTTTATCTCACTTGAGAACGAATCTAGACTTCGAAAAAATTGT
* * ** * * * *
87488 AGGAAGAAAGCCTTTATTGTGACACCAAAGTGTCACTATCGTGTATTCTTATTAGAATACTATGT
196 AGGAAGAAAGCCTTTATTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGT
* * * *
87553 TTATGATGCCTACTCTTGAAATGAATGGGGATTAGTAGGGATTTATGCTTGTCTTATTTACGAGG
261 TTACGATGCCTAATCTTGAAAAGAATGGGGATTAGTAGGGATTTATGCTTGTCTTATTTACGAGA
* * * * * *
87618 CAAACTTAGATTCTATCAAAAATGGTTGAAAGGACTGCTTTTCTTGCGATAGCAAAGCATCAATG
326 CAAACTTAGATTCTATAAAAAATGGTTGAAAAGAC-ACTTTTCTTGCAATACCAAAGCATCAATA
*
87683 TCTTGTATCCTAATGAAGGAAATATGCT
390 TCATGTATCCTAATGAAGGAAATATGCT
* * * * *
87711 TTATTTGAGGGATGAATTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGA
1 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGA
* * ** * *
87776 AAATCATCAATATCATTTATCCTAATAAGGAGAATGTGCTTATAGTTCCTAATCATAAAATGAAT
66 AAATCATCAATACCATTTATCCGAATAAGGAGAATGCACTTATAGTGCCTAATCACAAAATGAAT
* * * * * *
87841 GAAGATCATTCCTAGAATC-GTGTTTGTCTCATTTGAGATACGAA-CTTAGACTT-TACAAAATT
131 GAAGATCATTACTAGAATCAATGTTTATCTCACTTGAGA-ACGAATC-TAGACTTCGA-AAAAAT
* *
87903 TGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACT
193 T-GTAGGAAGAAAGCCTTTATTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACT
* * *
87968 ATGTTTACGGTGCCTAATCTTGAAAAGAATGGGGATTAGTA-TGACTATTCATG-TTAGTTTTAT
257 ATGTTTACGATGCCTAATCTTGAAAAGAATGGGGATTAGTAGGGA-T-TT-ATGCTT-GTCTTAT
*
88031 TTGA-GAGACAAACTTTGATTCTATAAAAAATGG-TGAAAAGA-ACTTTTCTTGCAATACCAAAG
318 TT-ACGAGACAAACTTAGATTCTATAAAAAATGGTTGAAAAGACACTTTTCTTGCAATACCAAAG
88093 CATCAATATCATGTAT
382 CATCAATATCATGTAT
88109 TCGAAGGGAA
Statistics
Matches: 341, Mismatches: 48, Indels: 18
0.84 0.12 0.04
Matches are distributed among these distances:
417 18 0.05
418 183 0.54
419 91 0.27
420 11 0.03
421 37 0.11
422 1 0.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (417 bp):
TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGA
AAATCATCAATACCATTTATCCGAATAAGGAGAATGCACTTATAGTGCCTAATCACAAAATGAAT
GAAGATCATTACTAGAATCAATGTTTATCTCACTTGAGAACGAATCTAGACTTCGAAAAAATTGT
AGGAAGAAAGCCTTTATTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGT
TTACGATGCCTAATCTTGAAAAGAATGGGGATTAGTAGGGATTTATGCTTGTCTTATTTACGAGA
CAAACTTAGATTCTATAAAAAATGGTTGAAAAGACACTTTTCTTGCAATACCAAAGCATCAATAT
CATGTATCCTAATGAAGGAAATATGCT
Found at i:88817 original size:475 final size:473
Alignment explanation
Indices: 87711--89516 Score: 2314
Period size: 473 Copynumber: 3.8 Consensus size: 473
87701 GAAATATGCT
* * * *
87711 TTATTTGAGGGATGAATTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGA
1 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * *
87776 AAATCATCAATATCATTTATCCTAATA-AGGAGAATGTGCTTATAGTTCCTAATCATAAAATGAA
66 AAATCATCAATATCATTTATCCTAA-AGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * *
87840 TGAAGATCATTCCTAGAATC-GTGTTTGTCTCATTTGAGATACGAACTTAGACTTTACAAAATTT
130 TGAAGATCATTTCTAGAATCTATGTTTGTCTCATTTGAGACACGAACTTAGACTTTACAAAAATT
* *
87904 GGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTA
195 GGTGGGAAGAAAACCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTA
* * *
87969 TGTTTACGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATG-TTAGTTTTATTT
260 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTA-TCTTATTT
* * *
88033 GAGAGACAAACTTTGATTCTATAAAAAATG-GTGAAA-AGAA-CTTTTCTTGCAATACCAAAGCA
324 AAGAGACAAACTTTGATTCTATAAAAAATGTG-GAAAGAAAACCTTTTCTTGCAACACCAAAGCA
* * * * * *
88095 TCAATATCATGTAT-T--CGAAGGGAATGTGTTTTTGGCTCTCACTATTGAAAGGAATGGAGACT
388 TCAATGTCATGTATCTAATGAAGGGAATGTGTTTTTGGTTCCCAATATTGAAA-AAATGGAGACT
* *
88157 GTTACGAGAATAAATTCTTGCC
452 GTTACGAGAATCAATGCTTGCC
* * *
88179 TTATTTAAGGGGTGAACTTTGATTTTAAGGAAAATAGGACAAAGAAAAGTTTTCCATGCAAAAGA
1 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * * * *
88244 AATTCGTTAATATCATTTATCCTAAAGATGAGAAGGTGTTTATAGTGCCTAATCATAAAATG-AT
66 AAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * *
88308 GGAAGATCATTTCTAGATTCTATGTTTCTCTCATTTGAGACACGAACCTAGACTGTACAAAAATT
131 -GAAGATCATTTCTAGAATCTATGTTTGTCTCATTTGAGACACGAACTTAGACTTTACAAAAATT
* * * *
88373 GGTGGGAAGAAAACCTTTCTTACGTAACAAAAGCGTCAATATCGTGTATCTTTATGAGAAGACTA
195 GGTGGGAAGAAAACCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTA
* * *
88438 TGTTTTTGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTTATGTTTATCTTATATA
260 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTATCTTATTTA
88503 AGAGACAAACTTTGATTCTATAAAAAATGTTGGAAAGAAAACCTTTTCTTGCAACACCAAAGCAT
325 AGAGACAAACTTTGATTCTATAAAAAATG-TGGAAAGAAAACCTTTTCTTGCAACACCAAAGCAT
* * * *
88568 CAATGTCTTGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCAATCTTGAAAAAATTGAGACTG
389 CAATGTCATGTAT-CTAATGAAGGGAATGTGTTTTTGGTTCCCAATATTGAAAAAATGGAGACTG
* *
88633 TTACGAGAATCGATGCTTGTC
453 TTACGAGAATCAATGCTTGCC
*
88654 TTATTTAAGGGATGAACATTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
1 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * *
88719 AAATCATTAATATCATTTATTCTAAAGAGGTGAATGTGTTTATAGTGCCTAATTACAAAATG-AT
66 AAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * * *
88783 GGAAGATCATTTCTAGAATCTATGCTTGTCTCATTTAAGGCACGAACATAGACATTACAAAAATT
131 -GAAGATCATTTCTAGAATCTATGTTTGTCTCATTTGAGACACGAACTTAGACTTTACAAAAATT
* * * * * *
88848 GGTAGGAAGAAAGCCTTTCTTGCAAAACCTAAGCATCAATATCGTGTATCCTTTTGAGAAGACTA
195 GGTGGGAAGAAAACCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTA
* * ** **
88913 TGTTTATGGCGCCTAAT-CTCGAAAAAAATGGGGATTAGCGTGACTATTCATGTTTGCCTTATTT
260 TGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGACTATTCATGTTTATCTTATTT
* * *
88977 AAG-GAACAAACTTTGATTCTATAAAAAATGATGAAAAGGAAACCTTTCCTT---ACTACCAAAG
324 AAGAG-ACAAACTTTGATTCTATAAAAAATG-TGGAAAGAAAACCTTTTCTTGCAAC-ACCAAAG
** *
89038 CATCAATGTCATGTATCTTAATGAAGGGAATGCATTTTTGGTTCGCAATATTGAAAAGAATGGAG
386 CATCAATGTCATGTATC-TAATGAAGGGAATGTGTTTTTGGTTCCCAATATTGAAAA-AATGGAG
* *
89103 ACTGTTACGAGAATCAACGTTTGCC
449 ACTGTTACGAGAATCAATGCTTGCC
* * * * *
89128 TTA-CTAAGGGATGAACTTTGATTTTAAGGAGAATAGGGCAACGAAATGAGTTCCATGCAAAAGA
1 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* *
89192 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGTCTAATCACAAAATGAAT
66 AAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * * * * * *
89257 AAAGATCATTACCATAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAATTT
131 GAAGATCATTTCTAGAATCTATGTTTGTCTCATTTGAGACACGAACTTAGACTTTACAAAAATTG
*
89322 GTGGGAAGAAAACCTTTCTTACGAAACCACAGCATCAATATCGTGTATCCTTATGAGAAGACTAT
196 GTGGGAAGAAAACCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAT
* * * * * * **
89387 GTCTATGGTGTCTAATCCGGAAAAGAATGGGGATTAGTATGACTGTACGTGTTCGTCTTATTTAA
261 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTATCTTATTTAA
** * *** * * *
89452 GAGACAAACACTGATTATGCCAAAAATAGTGGAAAGAAAAGCATTTCTTGCGACACCAAAGCATC
326 GAGACAAACTTTGATTCTATAAAAAAT-GTGGAAAGAAAACCTTTTCTTGCAACACCAAAGCATC
89517 TGATGACAAC
Statistics
Matches: 1156, Mismatches: 158, Indels: 41
0.85 0.12 0.03
Matches are distributed among these distances:
467 3 0.00
468 128 0.11
469 180 0.16
470 7 0.01
471 4 0.00
472 36 0.03
473 364 0.31
474 39 0.03
475 364 0.31
476 31 0.03
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (473 bp):
TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
AAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
GAAGATCATTTCTAGAATCTATGTTTGTCTCATTTGAGACACGAACTTAGACTTTACAAAAATTG
GTGGGAAGAAAACCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAT
GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTATCTTATTTAA
GAGACAAACTTTGATTCTATAAAAAATGTGGAAAGAAAACCTTTTCTTGCAACACCAAAGCATCA
ATGTCATGTATCTAATGAAGGGAATGTGTTTTTGGTTCCCAATATTGAAAAAATGGAGACTGTTA
CGAGAATCAATGCTTGCC
Found at i:89287 original size:473 final size:475
Alignment explanation
Indices: 87711--89460 Score: 2278
Period size: 475 Copynumber: 3.7 Consensus size: 475
87701 GAAATATGCT
* * * *
87711 TTATTTGAGGGATGAATTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGA
1 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * *
87776 AAATCATCAATATCATTTATCCTAATA-AGGAGAATGTGCTTATAGTTCCTAATCATAAAATGAA
66 AAATCATCAATATCATTTATCCTAA-AGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG-A
* * *
87840 T-GAAGATCA-TTCCTAGAAT-CGTGTTTGTCTCATTTGAGATACGAACTTAGACTTTACAAAAT
129 TGGAAGATCATTTCC-AGAATCCATGTTTGTCTCATTTGAGACACGAACTTAGACTTTACAAAAA
* *
87902 TTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGAC
193 TTGGTGGGAAGAAAACCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGAC
* ** * *
87967 TATGTTTACGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTAGTTTTATT
258 TATGTTTATGGTGCCTAATCCGGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATT
* * *
88032 TGAGAGACAAACTTTGATTCTATAAAAAATGGTGAAAA-G-AA-CTTTTCTTGCAATACCAAAGC
323 TAAGAGACAAACTTTGATTCTATAAAAAATGATGAAAAGGAAACCTTTTCTT-CACTACCAAAGC
* * * * * *
88094 ATCAATATCATGTA--TT--CGAAGGGAATGTGTTTTTGGCTCTCACTATTGAAAGGAATGGAGA
387 ATCAATGTCATGTATCTTAATGAAGGGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGA
*
88155 CTGTTACGAGAAT-AAATTCTTGCC
452 CTGTTACGAGAATCAAAGT-TTGCC
* * *
88179 TTATTTAAGGGGTGAACTTTGATTTTAAGGAAAATAGGACAAAGAAAAGTTTTCCATGCAAAAGA
1 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * * * *
88244 AATTCGTTAATATCATTTATCCTAAAGATGAGAAGGTGTTTATAGTGCCTAATCATAAAATGATG
66 AAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGATG
* * * * * *
88309 GAAGATCATTTCTAGATTCTATGTTTCTCTCATTTGAGACACGAACCTAGACTGTACAAAAATTG
131 GAAGATCATTTCCAGAATCCATGTTTGTCTCATTTGAGACACGAACTTAGACTTTACAAAAATTG
* * * *
88374 GTGGGAAGAAAACCTTTCTTACGTAACAAAAGCGTCAATATCGTGTATCTTTATGAGAAGACTAT
196 GTGGGAAGAAAACCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAT
* * * * *
88439 GTTTTTGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTTATGTTTATCTTATATAA
261 GTTTATGGTGCCTAATCCGGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAA
* * *
88504 GAGACAAACTTTGATTCTATAAAAAATGTTGGAAAGAAAACCTTTTCTTGCAAC-ACCAAAGCAT
326 GAGACAAACTTTGATTCTATAAAAAATGATGAAAAGGAAACCTTTTCTT-C-ACTACCAAAGCAT
* * * * *
88568 CAATGTCTTGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCAATCTTGAAAA-AATTGAGACT
389 CAATGTCATGTATCTTAATGAAGGGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACT
* * * *
88632 GTTACGAGAATCGATGCTTGTC
454 GTTACGAGAATCAAAGTTTGCC
*
88654 TTATTTAAGGGATGAACATTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
1 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * *
88719 AAATCATTAATATCATTTATTCTAAAGAGGTGAATGTGTTTATAGTGCCTAATTACAAAATGATG
66 AAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGATG
* * * * * * *
88784 GAAGATCATTTCTAGAATCTATGCTTGTCTCATTTAAGGCACGAACATAGACATTACAAAAATTG
131 GAAGATCATTTCCAGAATCCATGTTTGTCTCATTTGAGACACGAACTTAGACTTTACAAAAATTG
* * * * * *
88849 GTAGGAAGAAAGCCTTTCTTGCAAAACCTAAGCATCAATATCGTGTATCCTTTTGAGAAGACTAT
196 GTGGGAAGAAAACCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAT
* * ** *
88914 GTTTATGGCGCCTAATCTC-GAAAAAAATGGGGATTAGCGTGACTATTCATGTTTGCCTTATTTA
261 GTTTATGGTGCCTAATC-CGGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTA
*
88978 AG-GAACAAACTTTGATTCTATAAAAAATGATGAAAAGGAAACCTTTCCTT-ACTACCAAAGCAT
325 AGAG-ACAAACTTTGATTCTATAAAAAATGATGAAAAGGAAACCTTTTCTTCACTACCAAAGCAT
** *
89041 CAATGTCATGTATCTTAATGAAGGGAATGCATTTTTGGTTCGCAATATTGAAAAGAATGGAGACT
389 CAATGTCATGTATCTTAATGAAGGGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACT
*
89106 GTTACGAGAATCAACGTTTGCC
454 GTTACGAGAATCAAAGTTTGCC
* * * * *
89128 TTA-CTAAGGGATGAACTTTGATTTTAAGGAGAATAGGGCAACGAAATGAGTTCCATGCAAAAGA
1 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* *
89192 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGTCTAATCACAAAATGAAT
66 AAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG-AT
* * * * *
89257 -AAAGATCATTACCATAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAATT
130 GGAAGATCATTTCCAGAATCCATGTTTGTCTCATTTGAGACACGAACTTAGACTTTACAAAAATT
* *
89321 TGTGGGAAGAAAACCTTTCTTACGAAACCACAGCATCAATATCGTGTATCCTTATGAGAAGACTA
195 GGTGGGAAGAAAACCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTA
* * * * * *
89386 TGTCTATGGTGTCTAATCCGGAAAAGAATGGGGATTAGTATGACTGTACGTGTTCGTCTTATTTA
260 TGTTTATGGTGCCTAATCCGGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTA
89451 AGAGACAAAC
325 AGAGACAAAC
89461 ACTGATTATG
Statistics
Matches: 1108, Mismatches: 154, Indels: 35
0.85 0.12 0.03
Matches are distributed among these distances:
467 3 0.00
468 123 0.11
469 190 0.17
471 2 0.00
472 33 0.03
473 340 0.31
474 35 0.03
475 351 0.32
476 31 0.03
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (475 bp):
TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
AAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGATG
GAAGATCATTTCCAGAATCCATGTTTGTCTCATTTGAGACACGAACTTAGACTTTACAAAAATTG
GTGGGAAGAAAACCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAT
GTTTATGGTGCCTAATCCGGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAA
GAGACAAACTTTGATTCTATAAAAAATGATGAAAAGGAAACCTTTTCTTCACTACCAAAGCATCA
ATGTCATGTATCTTAATGAAGGGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTGT
TACGAGAATCAAAGTTTGCC
Done.